>input_sequence_84773
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------------------------------------------------------ATGGCAAAAAAGTTGGGTTCTGCCGG
CTTCTGTAACAACCTTGCAGGCACCCTGTCCTGCAAACGGGCCTTTCGGGTAGCATTTCTCCGTAAGATCCGCATCATGT
TGCCAGCAAAACGCGAGGCGTACAGTGCCGCGCCCAGACTGAGCTTGGTAGAGTCGTCACTTACAATAGCTGCTTGTAAC
CTCTTCTCCTTCTCAAACAAAGAATCCTCTAGCTTCTTTCTGCAATATCTGTGCCAAGCTGCCTGTATAAAACAAGCGGC
CCAGGTTCTCCACTGTTGTGAGTAG-------------------------------------------------------
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>chr6A_1_TraesCS6A01G196900
TCACACATATCAAAAAAAGATGAGTCTACAACCTAATAAATGAAGTGATGCATGATACAACACATATGTTACTACTCATT
GTAGGGGTAGTAACATAAATTAGTAACATATGCATGTTACTCCTCTAAGTTACTACCCACTATGACTAGTCTAAGTTACC
TCCACTATGGCTAGCCTAATATACACAATTAATTAGAGAAAAGGTATGGGCCCCCCGTTGGCCAAAACCGAGCTTTGAAA
ATTGCTCCAACTTTATACCGTTGGTATGATAAATTTAAAATTTAGGCCCCGCAAAAATAGATGGAGGGAGGACGGCTTAT
CTATGGTGTGATCAGAACTGTCGTAGAGAAATCATACCAAAAATATCATATCTATAGCATG-TTTTTTGGTGTTTTTTTT
GTGGAAACTGCAGTATGGCTCTTAATACACTGTTGATATGCATTTTTGATAGACCTAGGCGTGCGCCTCCCTGCTGCCAC
CGAATGACACCATTGTGCCACACTGATTGACAGGCACACAATTACCTATCCCGTTGCAACTCACGGGCATATTTGCTAGC
CATTAATAGTGAT-------------------------------------------------------------------
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-------------------ATATAACTGGTGGTCTTTCAAAATCGTTGGCAT------GGTGTACGACCAATTACGAACT
TTGGTTCCCAAGCGGACTGTTTGTCCTACAAGCATGTGTGCTGGAACGAAGAAATGACCAGTTACATTTAGAGTTTCCAG
CCTAAAACATCATTCAAGAGTTTCATGTTTTCCAATTCAGGTACGAATAAATGTGGAATGCTTATA-TAGATACCTTCAA
TATACAAACACAGCACATGTATAGACAACGAAAAGCAATAATACATTGAATTGCATTATATAAATTACAAGGATGCAGAA
CAAGCGGTCTATCTATGTATAGCATCCAGTCATAAACTGAGCCGAGCTGGGAGAAGATGAGGGCATAAGAACAAACTTTA
CCAGTTGGGTTGTGACTTTCTGCTTGTAGCAGGGTATGTCAAAATTACTCTCCAATGGCAAAAAAGTTGGGTTCTGCCGG
CTTCTGTAACAACCTTGCAGGCACCCTGTCCTGCAAACGGGCCTTTCGGGTAGCATTTCTCCGTAAGATCCGCATCATGT
TGCCAGCAAAACGCGAGGCGTACAGTGCCGCGCCCAGACTGAGCTTGGTAGAGTCGTCACTTACAATAGCTGCTTGTAAC
CTCTTCTCCTTCTCAAACAAAGAATCCTCTAGCTTCTTTCTGCAATATCTGTGCCAAGCTGCCTGTATAAAACAAGCGGC
CCAGGTTCTCCACTGTTGTGAGTAGAATCTAAAGGTATGCTGGAGCTGTTTGCTATGGAGTTTCCTAAACTGGGTGGCTA
CAAACTTCAAGTCATCAGCCCTCAGAACAAAGGCTTCAACTTCAGACAATGTCTTCACTGTTCTGGTTGAGCTGGGAAGG
TTTGAAACTGCAGCGGGGTCAAGAGCCCAAGTGAGGAGCTCTTCACCGCAGAAGTCTCCACCTTTGAGAACATTGGAGTT
GAAGAATCCGCTCTGTCCACCATTTGTCGTCATACTCTCGAGATATCCTCTCATAACAAAAAGCATTTCATTCACGGGGT
CTCCTTCTCGAATTATGCAGCTGTCCTCAGTGTACAGCATGGGCTTTAGACGATCACACATTGCATCCAGGAGCTGCTCG
TCCATGTTTTCAAACATTGGAACCTGCAAACAGGAGGGGAAGGATTAAAGATGAGAGAGCGAAGTAACCAAACTACGGGT
GTGTGGCCTACAAAACAGACCACAGAAACATGAACTGTGAAATGTGCACTACACTGCAGATAAGAAACTATGGGGCCTAC
AAAACAGACTACAGAAATATGAACTGTGAAATGTGCACTACAGGCAGATAAGAAACTATGGGGTCCAGAACAGAACTATA
GACATGTGCTGATGAATGCAGATCCGGCAATTCAAAATAAGGAGGACATGAAGGCACTCCGAGCTCGTTTGGCAGAGTTG
GAGGCGGTTACCCCTCCTGAGGTTCCTCAACTGGTGCCTGGACTGGATCTTGAGGCAAGGGATGCCTTGGTGGTGCATGC
TGAGGACGTCACCATGTCCTGGTGCATCTCAAGGCGAAGGAGCTTCCTACCGTTCCTCCTTGCAAGATGGTGTTGGAGGC
GAGCAAGGCCTTGGCTTCACAGGTGGTCAAACTAGATTGGGCGGTTCTATCCAGGCTATTTTGGTCGGGGCCAACTAGCT
TAGATAGTCGAGCTGACTTCTAACACGGCACCAATGTTGTTCAAGAAACAACTTTTGACGAGGGG
>chr6D_270
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-----------------------------TAAATTTAAAATTTAGGCCCCGCAAAAATAGATGGAGGACGGT----TTAT
CTATGGTGTGATCAGAACTGTCGTAGAGAAATCATGCCAAAAATATCATATCTATAGCATGCTTTTTTGGTTTTCTTTTT
GTGGAAACTGCAGTATGGTTTTTAATACACTGTTGATATGCATTTTTGCTAGACCTAGGCGTGCGCCTCCCTGCTGCCAC
TGAATGACACCATTGTGCCACACTGATTGACAGGCACACAATTACCTATCCCGTTGCAACTCAC--------TTGCTAGC
CATTAATCTTTTCCCTAATATAATAATTAATAATAAAGAAAGTACGGATTGACTTTGTCAGGTTCACCGTCACGGTGTTT
TTCTAAAAAGTCCATGTAATTTTTCATAATAGAACCCGCACTCTTTTTGCCCCATGGAGTAGGTCCCGTCCGTCGCTGGA
CCGAGACGTGAGTTTGCTCGTCACCATGGCCCGCACTTTTTTTAAACGATTATTAGACGAGTAGCGAAAAATACTATTAT
TAGAACTCATAAATAGTCCCACCTCGCTCCTTTGCGTATAATTCAATCAATTTATATTCGCCAGCGATTTTGCCGTATCA
GAAATCAACAAAAGTATGAAGGGGGCAGAACGAAGGAATTAATCCCACAAGAGGAGAAAGATCTGGGAAATCGGGATCGG
GATAAGCACCATCGGCCGCGGGATCAGCTGGAGCAGAGGAGGCCGGACGAGCCAGCGGCGCCGCGCGGCAAAGCGGCGGC
ATGAGCAGCCAGAGAAAGAGACGCACGGGAGCTAGAGGGTTGAGAGGAAAATGGCAACGGCGGGTGGCGAGAAAAATTAA
CATAGTAAAAACCTGTTTGCTTTTGAATGTTAACACACACAAAACTATATATAAACAACCCTACTTAGATGCAACACTAC
ACTTGCATTCAAAATAAATCCGTTTGCATTCAAATCTTTTAAAAATTCTAAGAATTTTTTTTGGATTAGTGATTAAACTC
TCGAATATAGTATACAATAATTCCACCGTCTGTATATCCTGCTAAAAACACTTATACCATTCCTCTTCCATCCGATTTTA
GTTCTAAGCAGTGGCGGAGCTATGGCAATGCCCGATGGGCCATGGCCCGCCCAGCCCATGCCATTTTCTATGTATTTTTG
GGCCATGAAACGCAATCCTTATAGTTGTTTTCTACAGCTGGCCCACCCATCTTTCTGGGCCAAGCTCCACCACTGGTGCT
AAGATGGAGGAGGAGCCATAAAAGCACATCTCGACGGCTTTCTCAACTTTATACTACATGGTCTAGACACCAACAATCCT
TTTTTAAATTGCGGTCACTGAGCATGTGAGATAAAGAGTGTTTCAAATTCTTCTTGCTTTTAAAAAATCATGCTTTTAAA
AATGTGTTAAAATGCCAATAAATGTTCCAATTTTTTTAACAAAATCATTTAAAATTGATCACAAAATTTTCGAAATTCAA
ATTTAAAAACACATGTTCAAAAAATGTTGATCTCAAAACATGTTTCAATCTCTCCCTAATAATAAAGCACGGATTGACTT
TGTCGGGTTCACCGTCATAATACGCTTCTTCCCATGAATTTACGCTTTCAGTTTTTTTCACCTATATTATTTTCTACATC
CAAGGTGGTACTATTGCTTCTTACCAACGAAATTTCGTCCGCTCAAATCAAACACAAGCGACCAACTATTGTTCTCCAAA
ACTAATCATATTATTTGCTTTCTACAGGTACTATGTAGACTATTCAAAGAGGTCATCTTCATGAAACTAGCAGAGGATAG
ACATTAGGAAAAATGAGAGATGAGGTGAGTTTTTGTTGTTCACCATCCAATTCAAGCATCACACAAATTAAGCATTACTA
TTCAAAGGATGCAAAGTTAACCTGTTCATCCTTTCTAGAGGAATTAATAAGTTAAAATTTATGTCCCGTTGCAACACACG
GGCTCTTTTGCTAGTAATAATATAACTGGTGGTCTTTCAAAATCGTTGGCTCTTTTACGGTGTACGACCAATTACGAACT
TTGGTTCCCAAGCGGACTGTTTGCCCTACAAGCATGTGTGCTGGAACGAAGAAATGACCAGTTACATATGGAGTTTCCAG
CCTAAAACATCATTCAAGAGTTTCATGTTT-CCAATTCAGGTACGAATAAATGTGGAATGCTTATAGTAGATACCTTCAA
TATACAAACACAGCACATGTATAGACAACGAAAAGCAATGATACATTGAATTGCATTATATAAATTACAAGGGTGCAGAA
CAAGCGGTCTATCTATGTACAGCATCCAGTCATAAACTGAGCCGAGCTGGGAGAAGATGAGGGCACAAGAACAAACTTTA
CCAGTTGGGTTGTGACTTTCTGCTTGTAGCAGGGTATGTCAAAATTACTCTCCAACGGCAAAAAAGTTGGGTTCTGCCGG
CTTCTGTAACAACCTTGCAGGCACCCTTTCCTGCAAACGGGCCTTTCGGGTAGCATTTCTCCGTAAGATCCGCATCATGT
TGCCAGCAAAACGCGAGGCGTACAGTGCTGCGCCCAGACTGAGCTTGGTAGAGTCGTCACTTACAATAGCTGCTTGTAAC
CTCTTCTCCTTCTCAAACAAAGAATCCTCTAGCTTCTTTCTGCAATATCTGTGCCAAGCTGCCTGTATAAAACAAGCGGC
CCAGGTTCTCCACTGTTGTGAGTAGAATCTAAAGGTATGCTGGAGCTGTTTGCTATGGAGTTTCCTAAACTGGGTGGCTA
CAAACTTCAAGTCATCAGCCCTCAGAACAAAGGCTTCAACTTCAGACAATGTCTTCACTGTTCTGGTTGAGCTGGGAAGG
TTTGAAACTGCAGCGGGGTCAAGAGCCCAAGTGAGGAGCTCTTCACCGCAGAAGTCTCCACCTTTGAGAACATTGGAGTT
GAAGAATCCGCTCTGTCCACCATTTGTCGTCATACTCTCGAGATATCCTCTCATAACAAAAAGCATTTCATTCACGGGGT
CTCCTTCTCGAATTATGCAGCTGTCCTCAGTGTACAGCATGGGCTTTAGACGATCACACATTGCATCCAAGAGCTGCTCG
TCCATGTTTTCAAACATTGGAACCTGCAAACAGGAGGGGAAGGATTAAAGATGAGAGAGCGAAGTAACCAAACTACGGGT
GTGTGGCCTACAAAACAGACCACAGAAACATGAACTGTGAAATGTGCACTACACTGCAGATAAGAAACTATGGGGCCTAC
AAAACAGACTACAGAAATATGAACTGTGAAATGTGCACTACAGGCAGATAAGAAACTATGGGGTCCAGAACAGAACTATA
GACATGTGCTGATGAATGCAGATCCAGCAATTCAAAAAAAGGAGGACATGAAGGCACTCCGATCTCGTTTGGCAGAGTTG
GAGGCGGTTACCCCTCCTGAGGTTCCTCGACTGGTGCCTGGACTGGATCTTGAGGC------------------------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSS--------------------------------------SS--SSSSS----
-----------------------------------S-----------------------------------S--S-----
------------------S-S---------------------------S-------------------------------
S---------------------------------------------------------------SSSSSSSS--------
-------SS-SSS-------------------------------------------------------------------
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--------------------------------------------------SS----------------------------
-----------------------S-------------------------------------------S-S----------
------------------------------S-------------------------------------------------
---------------------------------------S--------------------------------S-------
-------------------S---------------------------------------------S--------------
-------------------------------------------------------S------------------------
---------------------------S----------------------------------------------------
----------------------------S---------------------------------------------------
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-------------------------S-----------S------------------------S-----------------
----------------------------S---------------------------SSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_237
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---------------------------------------------------------TTGGCCAAAACCGAGCTTTG---
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>reverse_3824
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---------------------------------------------------------------AAGATGGTGTTGGAGGC
GAG-----------------------------------------------------------------------------
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