Multiple sequence alignment - TraesCS6A01G193800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G193800 chr6A 100.000 2492 0 0 1 2492 270737632 270740123 0.000000e+00 4602.0
1 TraesCS6A01G193800 chr6A 91.624 394 6 2 2126 2492 596181544 596181151 1.020000e-143 520.0
2 TraesCS6A01G193800 chr6A 90.955 398 9 2 2122 2492 84040667 84040270 6.150000e-141 510.0
3 TraesCS6A01G193800 chr1B 94.913 2064 81 4 1 2056 41316405 41314358 0.000000e+00 3208.0
4 TraesCS6A01G193800 chr1B 84.569 1335 123 33 810 2117 62197678 62196400 0.000000e+00 1247.0
5 TraesCS6A01G193800 chr1B 87.437 796 65 14 977 1753 44849223 44850002 0.000000e+00 883.0
6 TraesCS6A01G193800 chr1B 87.538 666 56 10 72 730 44839040 44839685 0.000000e+00 745.0
7 TraesCS6A01G193800 chr1B 88.068 528 42 11 210 730 62198757 62198244 7.620000e-170 606.0
8 TraesCS6A01G193800 chr1B 79.817 218 29 11 2122 2328 45122293 45122080 7.180000e-31 145.0
9 TraesCS6A01G193800 chr3B 94.812 1677 60 4 450 2118 773526033 773524376 0.000000e+00 2590.0
10 TraesCS6A01G193800 chr3B 95.192 312 13 2 135 445 773526539 773526229 2.230000e-135 492.0
11 TraesCS6A01G193800 chr3B 78.862 615 94 18 1193 1773 80163345 80163957 1.400000e-102 383.0
12 TraesCS6A01G193800 chr2D 86.471 1397 114 28 764 2118 467147242 467148605 0.000000e+00 1463.0
13 TraesCS6A01G193800 chr7B 85.986 842 73 17 1301 2118 539856693 539857513 0.000000e+00 859.0
14 TraesCS6A01G193800 chr3A 82.733 805 102 16 717 1513 182334382 182335157 0.000000e+00 682.0
15 TraesCS6A01G193800 chr3A 88.235 510 54 4 210 719 182069410 182069913 2.740000e-169 604.0
16 TraesCS6A01G193800 chr5A 91.709 398 6 2 2122 2492 548729488 548729885 6.100000e-146 527.0
17 TraesCS6A01G193800 chr1D 82.226 602 83 12 1130 1718 448960249 448960839 4.790000e-137 497.0
18 TraesCS6A01G193800 chr1D 86.977 215 21 7 169 382 408841299 408841507 4.140000e-58 235.0
19 TraesCS6A01G193800 chr7D 86.432 398 25 4 2122 2492 575753380 575753775 2.310000e-110 409.0
20 TraesCS6A01G193800 chr7A 83.333 444 46 9 799 1240 47770114 47770531 3.890000e-103 385.0
21 TraesCS6A01G193800 chr7A 86.246 349 37 6 1232 1579 47770724 47771062 3.920000e-98 368.0
22 TraesCS6A01G193800 chr1A 85.176 398 30 4 2122 2492 550759565 550759170 5.030000e-102 381.0
23 TraesCS6A01G193800 chr1A 84.925 398 29 11 2122 2492 580930683 580931076 8.420000e-100 374.0
24 TraesCS6A01G193800 chr5B 86.813 273 30 2 1846 2118 370053438 370053704 1.450000e-77 300.0
25 TraesCS6A01G193800 chr3D 84.615 117 10 5 2147 2259 15413079 15413191 2.620000e-20 110.0
26 TraesCS6A01G193800 chr3D 92.857 42 3 0 2121 2162 15412017 15412058 7.440000e-06 62.1
27 TraesCS6A01G193800 chrUn 98.361 61 1 0 2058 2118 474294355 474294415 9.420000e-20 108.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G193800 chr6A 270737632 270740123 2491 False 4602.0 4602 100.0000 1 2492 1 chr6A.!!$F1 2491
1 TraesCS6A01G193800 chr1B 41314358 41316405 2047 True 3208.0 3208 94.9130 1 2056 1 chr1B.!!$R1 2055
2 TraesCS6A01G193800 chr1B 62196400 62198757 2357 True 926.5 1247 86.3185 210 2117 2 chr1B.!!$R3 1907
3 TraesCS6A01G193800 chr1B 44849223 44850002 779 False 883.0 883 87.4370 977 1753 1 chr1B.!!$F2 776
4 TraesCS6A01G193800 chr1B 44839040 44839685 645 False 745.0 745 87.5380 72 730 1 chr1B.!!$F1 658
5 TraesCS6A01G193800 chr3B 773524376 773526539 2163 True 1541.0 2590 95.0020 135 2118 2 chr3B.!!$R1 1983
6 TraesCS6A01G193800 chr3B 80163345 80163957 612 False 383.0 383 78.8620 1193 1773 1 chr3B.!!$F1 580
7 TraesCS6A01G193800 chr2D 467147242 467148605 1363 False 1463.0 1463 86.4710 764 2118 1 chr2D.!!$F1 1354
8 TraesCS6A01G193800 chr7B 539856693 539857513 820 False 859.0 859 85.9860 1301 2118 1 chr7B.!!$F1 817
9 TraesCS6A01G193800 chr3A 182334382 182335157 775 False 682.0 682 82.7330 717 1513 1 chr3A.!!$F2 796
10 TraesCS6A01G193800 chr3A 182069410 182069913 503 False 604.0 604 88.2350 210 719 1 chr3A.!!$F1 509
11 TraesCS6A01G193800 chr1D 448960249 448960839 590 False 497.0 497 82.2260 1130 1718 1 chr1D.!!$F2 588
12 TraesCS6A01G193800 chr7A 47770114 47771062 948 False 376.5 385 84.7895 799 1579 2 chr7A.!!$F1 780

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
436 444 0.179018 GATGGCCGCTTGGGTTAGAT 60.179 55.0 0.0 0.0 38.44 1.98 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2403 3410 0.105658 TAGCGATAGGAGTTGCCCCT 60.106 55.0 0.0 0.0 37.37 4.79 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
34 35 1.676006 CCAGTTCTTGCGGTGAAGTTT 59.324 47.619 0.00 0.00 0.00 2.66
42 43 1.569493 CGGTGAAGTTTGCGTCCTG 59.431 57.895 0.00 0.00 0.00 3.86
59 60 3.003793 GTCCTGACAGGTCTTTTTGCTTC 59.996 47.826 21.06 0.00 36.53 3.86
94 95 4.295051 GCTTTTTGATTGGTCGCTGTTTA 58.705 39.130 0.00 0.00 0.00 2.01
107 108 2.167693 CGCTGTTTACCCAGATGTCCTA 59.832 50.000 0.00 0.00 34.23 2.94
127 128 2.125912 GCTGTCGATCTGTGCCGT 60.126 61.111 0.00 0.00 0.00 5.68
179 180 1.202486 GGTTGTCCTGTCACTGTCGAA 60.202 52.381 0.00 0.00 0.00 3.71
186 187 2.205074 CTGTCACTGTCGAACTTTGCT 58.795 47.619 0.00 0.00 0.00 3.91
197 198 2.049802 CTTTGCTGCTGTTGGCCG 60.050 61.111 0.00 0.00 40.92 6.13
312 314 2.431260 CATGCGCTGGTTTGCCAC 60.431 61.111 9.73 0.00 40.46 5.01
338 340 6.381481 TTTTCTGATCATGTGTATGGCATC 57.619 37.500 1.65 0.00 34.97 3.91
365 367 6.332630 GGGTTGCATGCATGATATAATTACC 58.667 40.000 30.64 20.29 0.00 2.85
435 443 1.223487 GATGGCCGCTTGGGTTAGA 59.777 57.895 0.00 0.00 38.44 2.10
436 444 0.179018 GATGGCCGCTTGGGTTAGAT 60.179 55.000 0.00 0.00 38.44 1.98
460 659 5.645497 TGGTTTTGATTTGTTTTTCCCACTG 59.355 36.000 0.00 0.00 0.00 3.66
471 670 6.055588 TGTTTTTCCCACTGTCTTCTCTAAG 58.944 40.000 0.00 0.00 0.00 2.18
625 829 4.370364 AATTTGTGCATGGTCGGTTATC 57.630 40.909 0.00 0.00 0.00 1.75
865 1600 0.390735 GTTACCTCGACGGGTTGCAT 60.391 55.000 12.32 0.00 40.48 3.96
1135 1877 4.873810 TGATGGCGGGGCATTCGG 62.874 66.667 9.22 0.00 0.00 4.30
1151 1894 4.813235 GGCGGGCTTATGGGCACA 62.813 66.667 0.00 0.00 42.84 4.57
1188 1931 0.319641 GCCTATCGATGGACGGTTCC 60.320 60.000 10.78 0.00 43.19 3.62
1276 2220 4.648626 ACCCCTCCGACGTCGTCA 62.649 66.667 33.49 20.00 37.74 4.35
1436 2384 1.153309 CAGCTCGATGTGGCCATGA 60.153 57.895 9.72 4.08 0.00 3.07
1504 2471 1.116536 GGACTAGGGCAGCTACTCCC 61.117 65.000 9.27 9.27 42.94 4.30
1520 2487 3.536917 CCTCGCTACCATGCCCGA 61.537 66.667 0.00 0.00 0.00 5.14
1647 2638 2.970974 GCACAAGCGCTGGACCTTC 61.971 63.158 21.26 0.00 0.00 3.46
1648 2639 1.302033 CACAAGCGCTGGACCTTCT 60.302 57.895 21.26 0.00 0.00 2.85
1853 2850 1.375268 TGGCAATGCACGACATCGA 60.375 52.632 7.79 0.00 43.02 3.59
1964 2961 1.703438 GAGCGAGTTGATGCAGCAGG 61.703 60.000 4.20 0.00 0.00 4.85
1981 2978 1.128188 AGGAGGTGGCGAGGAAAAGT 61.128 55.000 0.00 0.00 0.00 2.66
1997 2994 0.962489 AAGTGTGAGACCTGGAGACG 59.038 55.000 0.00 0.00 0.00 4.18
2118 3125 4.961511 TGTGTGCCGACTGCCGAC 62.962 66.667 0.00 0.00 41.76 4.79
2134 3141 4.764771 ACGCCAGGGCCGTACCTA 62.765 66.667 4.42 0.00 39.34 3.08
2135 3142 3.912907 CGCCAGGGCCGTACCTAG 61.913 72.222 4.42 0.00 39.34 3.02
2136 3143 2.443390 GCCAGGGCCGTACCTAGA 60.443 66.667 0.00 0.00 39.34 2.43
2137 3144 2.062177 GCCAGGGCCGTACCTAGAA 61.062 63.158 0.00 0.00 39.34 2.10
2138 3145 1.619807 GCCAGGGCCGTACCTAGAAA 61.620 60.000 0.00 0.00 39.34 2.52
2139 3146 0.906775 CCAGGGCCGTACCTAGAAAA 59.093 55.000 0.00 0.00 39.34 2.29
2140 3147 1.489230 CCAGGGCCGTACCTAGAAAAT 59.511 52.381 0.00 0.00 39.34 1.82
2141 3148 2.484947 CCAGGGCCGTACCTAGAAAATC 60.485 54.545 0.00 0.00 39.34 2.17
2142 3149 2.169769 CAGGGCCGTACCTAGAAAATCA 59.830 50.000 0.00 0.00 39.34 2.57
2143 3150 2.434702 AGGGCCGTACCTAGAAAATCAG 59.565 50.000 0.00 0.00 39.65 2.90
2144 3151 2.433239 GGGCCGTACCTAGAAAATCAGA 59.567 50.000 0.00 0.00 39.10 3.27
2145 3152 3.492829 GGGCCGTACCTAGAAAATCAGAG 60.493 52.174 0.00 0.00 39.10 3.35
2146 3153 3.492829 GGCCGTACCTAGAAAATCAGAGG 60.493 52.174 0.00 0.00 34.51 3.69
2147 3154 3.718815 CCGTACCTAGAAAATCAGAGGC 58.281 50.000 0.00 0.00 31.81 4.70
2148 3155 3.492829 CCGTACCTAGAAAATCAGAGGCC 60.493 52.174 0.00 0.00 31.81 5.19
2149 3156 3.492829 CGTACCTAGAAAATCAGAGGCCC 60.493 52.174 0.00 0.00 31.81 5.80
2150 3157 1.486726 ACCTAGAAAATCAGAGGCCCG 59.513 52.381 0.00 0.00 31.81 6.13
2151 3158 1.202698 CCTAGAAAATCAGAGGCCCGG 60.203 57.143 0.00 0.00 0.00 5.73
2152 3159 1.762957 CTAGAAAATCAGAGGCCCGGA 59.237 52.381 0.73 0.00 0.00 5.14
2153 3160 0.543749 AGAAAATCAGAGGCCCGGAG 59.456 55.000 0.73 0.00 0.00 4.63
2154 3161 1.077429 AAAATCAGAGGCCCGGAGC 60.077 57.895 0.73 4.32 42.60 4.70
2155 3162 2.876368 AAAATCAGAGGCCCGGAGCG 62.876 60.000 0.73 0.00 45.17 5.03
2156 3163 4.841617 ATCAGAGGCCCGGAGCGA 62.842 66.667 0.73 0.00 45.17 4.93
2158 3165 3.854669 CAGAGGCCCGGAGCGAAT 61.855 66.667 0.73 0.00 45.17 3.34
2159 3166 3.541713 AGAGGCCCGGAGCGAATC 61.542 66.667 0.73 4.29 45.17 2.52
2160 3167 3.849951 GAGGCCCGGAGCGAATCA 61.850 66.667 0.73 0.00 45.17 2.57
2161 3168 3.385749 GAGGCCCGGAGCGAATCAA 62.386 63.158 0.73 0.00 45.17 2.57
2162 3169 2.437716 GGCCCGGAGCGAATCAAA 60.438 61.111 0.73 0.00 45.17 2.69
2163 3170 2.043980 GGCCCGGAGCGAATCAAAA 61.044 57.895 0.73 0.00 45.17 2.44
2164 3171 1.384222 GGCCCGGAGCGAATCAAAAT 61.384 55.000 0.73 0.00 45.17 1.82
2165 3172 0.455815 GCCCGGAGCGAATCAAAATT 59.544 50.000 0.73 0.00 0.00 1.82
2166 3173 1.135112 GCCCGGAGCGAATCAAAATTT 60.135 47.619 0.73 0.00 0.00 1.82
2167 3174 2.098443 GCCCGGAGCGAATCAAAATTTA 59.902 45.455 0.73 0.00 0.00 1.40
2168 3175 3.792124 GCCCGGAGCGAATCAAAATTTAG 60.792 47.826 0.73 0.00 0.00 1.85
2169 3176 3.243068 CCCGGAGCGAATCAAAATTTAGG 60.243 47.826 0.73 0.00 0.00 2.69
2170 3177 3.363178 CGGAGCGAATCAAAATTTAGGC 58.637 45.455 0.00 0.00 0.00 3.93
2171 3178 3.706698 GGAGCGAATCAAAATTTAGGCC 58.293 45.455 0.00 0.00 0.00 5.19
2172 3179 3.490933 GGAGCGAATCAAAATTTAGGCCC 60.491 47.826 0.00 0.00 0.00 5.80
2173 3180 3.365472 AGCGAATCAAAATTTAGGCCCT 58.635 40.909 0.00 0.00 0.00 5.19
2174 3181 3.131046 AGCGAATCAAAATTTAGGCCCTG 59.869 43.478 0.00 0.00 0.00 4.45
2175 3182 3.130340 GCGAATCAAAATTTAGGCCCTGA 59.870 43.478 0.00 0.00 0.00 3.86
2176 3183 4.672409 CGAATCAAAATTTAGGCCCTGAC 58.328 43.478 0.00 0.00 0.00 3.51
2177 3184 4.157656 CGAATCAAAATTTAGGCCCTGACA 59.842 41.667 0.00 0.00 0.00 3.58
2178 3185 5.163519 CGAATCAAAATTTAGGCCCTGACAT 60.164 40.000 0.00 0.00 0.00 3.06
2179 3186 6.625532 AATCAAAATTTAGGCCCTGACATT 57.374 33.333 0.00 0.00 0.00 2.71
2180 3187 6.625532 ATCAAAATTTAGGCCCTGACATTT 57.374 33.333 0.00 0.00 0.00 2.32
2181 3188 5.792741 TCAAAATTTAGGCCCTGACATTTG 58.207 37.500 0.00 5.16 0.00 2.32
2182 3189 5.541868 TCAAAATTTAGGCCCTGACATTTGA 59.458 36.000 13.17 13.17 33.36 2.69
2183 3190 6.042552 TCAAAATTTAGGCCCTGACATTTGAA 59.957 34.615 14.25 3.32 32.99 2.69
2184 3191 6.432403 AAATTTAGGCCCTGACATTTGAAA 57.568 33.333 0.00 0.00 0.00 2.69
2185 3192 5.665916 ATTTAGGCCCTGACATTTGAAAG 57.334 39.130 0.00 0.00 0.00 2.62
2186 3193 1.928868 AGGCCCTGACATTTGAAAGG 58.071 50.000 0.00 0.00 0.00 3.11
2189 3196 0.527565 CCCTGACATTTGAAAGGGCG 59.472 55.000 8.66 0.00 42.92 6.13
2190 3197 0.527565 CCTGACATTTGAAAGGGCGG 59.472 55.000 0.00 0.00 0.00 6.13
2191 3198 1.533625 CTGACATTTGAAAGGGCGGA 58.466 50.000 0.00 0.00 0.00 5.54
2192 3199 2.094675 CTGACATTTGAAAGGGCGGAT 58.905 47.619 0.00 0.00 0.00 4.18
2193 3200 2.493278 CTGACATTTGAAAGGGCGGATT 59.507 45.455 0.00 0.00 0.00 3.01
2194 3201 3.691575 TGACATTTGAAAGGGCGGATTA 58.308 40.909 0.00 0.00 0.00 1.75
2195 3202 4.082845 TGACATTTGAAAGGGCGGATTAA 58.917 39.130 0.00 0.00 0.00 1.40
2196 3203 4.524714 TGACATTTGAAAGGGCGGATTAAA 59.475 37.500 0.00 0.00 0.00 1.52
2197 3204 5.011125 TGACATTTGAAAGGGCGGATTAAAA 59.989 36.000 0.00 0.00 0.00 1.52
2198 3205 6.048732 ACATTTGAAAGGGCGGATTAAAAT 57.951 33.333 0.00 0.00 0.00 1.82
2199 3206 5.874261 ACATTTGAAAGGGCGGATTAAAATG 59.126 36.000 12.89 12.89 38.87 2.32
2200 3207 5.476091 TTTGAAAGGGCGGATTAAAATGT 57.524 34.783 0.00 0.00 0.00 2.71
2201 3208 6.591750 TTTGAAAGGGCGGATTAAAATGTA 57.408 33.333 0.00 0.00 0.00 2.29
2202 3209 6.783708 TTGAAAGGGCGGATTAAAATGTAT 57.216 33.333 0.00 0.00 0.00 2.29
2203 3210 7.883391 TTGAAAGGGCGGATTAAAATGTATA 57.117 32.000 0.00 0.00 0.00 1.47
2204 3211 7.504924 TGAAAGGGCGGATTAAAATGTATAG 57.495 36.000 0.00 0.00 0.00 1.31
2205 3212 7.057894 TGAAAGGGCGGATTAAAATGTATAGT 58.942 34.615 0.00 0.00 0.00 2.12
2206 3213 6.877611 AAGGGCGGATTAAAATGTATAGTG 57.122 37.500 0.00 0.00 0.00 2.74
2207 3214 5.937111 AGGGCGGATTAAAATGTATAGTGT 58.063 37.500 0.00 0.00 0.00 3.55
2208 3215 5.763204 AGGGCGGATTAAAATGTATAGTGTG 59.237 40.000 0.00 0.00 0.00 3.82
2209 3216 5.529800 GGGCGGATTAAAATGTATAGTGTGT 59.470 40.000 0.00 0.00 0.00 3.72
2210 3217 6.038936 GGGCGGATTAAAATGTATAGTGTGTT 59.961 38.462 0.00 0.00 0.00 3.32
2211 3218 7.227116 GGGCGGATTAAAATGTATAGTGTGTTA 59.773 37.037 0.00 0.00 0.00 2.41
2212 3219 8.614346 GGCGGATTAAAATGTATAGTGTGTTAA 58.386 33.333 0.00 0.00 0.00 2.01
2237 3244 8.908786 ATGTTCATATAGAATTACACCACCAG 57.091 34.615 0.00 0.00 38.76 4.00
2238 3245 8.084985 TGTTCATATAGAATTACACCACCAGA 57.915 34.615 0.00 0.00 38.76 3.86
2239 3246 8.713971 TGTTCATATAGAATTACACCACCAGAT 58.286 33.333 0.00 0.00 38.76 2.90
2240 3247 8.993121 GTTCATATAGAATTACACCACCAGATG 58.007 37.037 0.00 0.00 38.76 2.90
2241 3248 7.161404 TCATATAGAATTACACCACCAGATGC 58.839 38.462 0.00 0.00 0.00 3.91
2242 3249 3.719268 AGAATTACACCACCAGATGCA 57.281 42.857 0.00 0.00 0.00 3.96
2243 3250 3.347216 AGAATTACACCACCAGATGCAC 58.653 45.455 0.00 0.00 0.00 4.57
2244 3251 2.877097 ATTACACCACCAGATGCACA 57.123 45.000 0.00 0.00 0.00 4.57
2245 3252 2.647683 TTACACCACCAGATGCACAA 57.352 45.000 0.00 0.00 0.00 3.33
2246 3253 2.183478 TACACCACCAGATGCACAAG 57.817 50.000 0.00 0.00 0.00 3.16
2247 3254 0.183492 ACACCACCAGATGCACAAGT 59.817 50.000 0.00 0.00 0.00 3.16
2248 3255 1.321474 CACCACCAGATGCACAAGTT 58.679 50.000 0.00 0.00 0.00 2.66
2249 3256 1.267806 CACCACCAGATGCACAAGTTC 59.732 52.381 0.00 0.00 0.00 3.01
2250 3257 1.133823 ACCACCAGATGCACAAGTTCA 60.134 47.619 0.00 0.00 0.00 3.18
2251 3258 1.955778 CCACCAGATGCACAAGTTCAA 59.044 47.619 0.00 0.00 0.00 2.69
2252 3259 2.030540 CCACCAGATGCACAAGTTCAAG 60.031 50.000 0.00 0.00 0.00 3.02
2253 3260 2.880268 CACCAGATGCACAAGTTCAAGA 59.120 45.455 0.00 0.00 0.00 3.02
2254 3261 3.316029 CACCAGATGCACAAGTTCAAGAA 59.684 43.478 0.00 0.00 0.00 2.52
2255 3262 3.953612 ACCAGATGCACAAGTTCAAGAAA 59.046 39.130 0.00 0.00 0.00 2.52
2256 3263 4.037208 ACCAGATGCACAAGTTCAAGAAAG 59.963 41.667 0.00 0.00 0.00 2.62
2257 3264 4.276678 CCAGATGCACAAGTTCAAGAAAGA 59.723 41.667 0.00 0.00 0.00 2.52
2258 3265 5.221106 CCAGATGCACAAGTTCAAGAAAGAA 60.221 40.000 0.00 0.00 0.00 2.52
2259 3266 6.444633 CAGATGCACAAGTTCAAGAAAGAAT 58.555 36.000 0.00 0.00 0.00 2.40
2260 3267 6.921857 CAGATGCACAAGTTCAAGAAAGAATT 59.078 34.615 0.00 0.00 0.00 2.17
2261 3268 8.077991 CAGATGCACAAGTTCAAGAAAGAATTA 58.922 33.333 0.00 0.00 0.00 1.40
2262 3269 8.078596 AGATGCACAAGTTCAAGAAAGAATTAC 58.921 33.333 0.00 0.00 0.00 1.89
2263 3270 7.094508 TGCACAAGTTCAAGAAAGAATTACA 57.905 32.000 0.00 0.00 0.00 2.41
2264 3271 6.972328 TGCACAAGTTCAAGAAAGAATTACAC 59.028 34.615 0.00 0.00 0.00 2.90
2265 3272 6.417930 GCACAAGTTCAAGAAAGAATTACACC 59.582 38.462 0.00 0.00 0.00 4.16
2266 3273 7.479980 CACAAGTTCAAGAAAGAATTACACCA 58.520 34.615 0.00 0.00 0.00 4.17
2267 3274 7.432252 CACAAGTTCAAGAAAGAATTACACCAC 59.568 37.037 0.00 0.00 0.00 4.16
2268 3275 7.339466 ACAAGTTCAAGAAAGAATTACACCACT 59.661 33.333 0.00 0.00 0.00 4.00
2269 3276 7.264373 AGTTCAAGAAAGAATTACACCACTG 57.736 36.000 0.00 0.00 0.00 3.66
2270 3277 6.263168 AGTTCAAGAAAGAATTACACCACTGG 59.737 38.462 0.00 0.00 0.00 4.00
2271 3278 5.935945 TCAAGAAAGAATTACACCACTGGA 58.064 37.500 0.71 0.00 0.00 3.86
2272 3279 6.542821 TCAAGAAAGAATTACACCACTGGAT 58.457 36.000 0.71 0.00 0.00 3.41
2273 3280 6.430925 TCAAGAAAGAATTACACCACTGGATG 59.569 38.462 0.71 0.00 0.00 3.51
2274 3281 5.880901 AGAAAGAATTACACCACTGGATGT 58.119 37.500 0.71 5.40 0.00 3.06
2275 3282 7.016153 AGAAAGAATTACACCACTGGATGTA 57.984 36.000 0.71 4.44 0.00 2.29
2276 3283 6.879458 AGAAAGAATTACACCACTGGATGTAC 59.121 38.462 0.71 0.00 31.09 2.90
2277 3284 6.374417 AAGAATTACACCACTGGATGTACT 57.626 37.500 0.71 0.00 31.09 2.73
2278 3285 7.490657 AAGAATTACACCACTGGATGTACTA 57.509 36.000 0.71 0.00 31.09 1.82
2279 3286 7.113658 AGAATTACACCACTGGATGTACTAG 57.886 40.000 0.71 0.00 31.09 2.57
2280 3287 6.668283 AGAATTACACCACTGGATGTACTAGT 59.332 38.462 0.71 0.00 40.92 2.57
2281 3288 5.909621 TTACACCACTGGATGTACTAGTC 57.090 43.478 0.00 0.00 38.24 2.59
2282 3289 4.048970 ACACCACTGGATGTACTAGTCT 57.951 45.455 0.00 0.00 38.24 3.24
2283 3290 5.188988 ACACCACTGGATGTACTAGTCTA 57.811 43.478 0.00 0.00 38.24 2.59
2284 3291 4.948621 ACACCACTGGATGTACTAGTCTAC 59.051 45.833 0.00 0.00 38.24 2.59
2285 3292 5.194432 CACCACTGGATGTACTAGTCTACT 58.806 45.833 0.00 0.00 38.24 2.57
2286 3293 5.652891 CACCACTGGATGTACTAGTCTACTT 59.347 44.000 0.00 0.00 38.24 2.24
2287 3294 6.827251 CACCACTGGATGTACTAGTCTACTTA 59.173 42.308 0.00 0.00 38.24 2.24
2288 3295 7.502895 CACCACTGGATGTACTAGTCTACTTAT 59.497 40.741 0.00 0.00 38.24 1.73
2289 3296 8.721479 ACCACTGGATGTACTAGTCTACTTATA 58.279 37.037 0.00 0.00 38.24 0.98
2290 3297 9.570468 CCACTGGATGTACTAGTCTACTTATAA 57.430 37.037 0.00 0.00 38.24 0.98
2319 3326 3.434940 AAAAATAGGGTGCCGAGAACT 57.565 42.857 0.00 0.00 0.00 3.01
2320 3327 2.403252 AAATAGGGTGCCGAGAACTG 57.597 50.000 0.00 0.00 0.00 3.16
2321 3328 0.107654 AATAGGGTGCCGAGAACTGC 60.108 55.000 0.00 0.00 0.00 4.40
2322 3329 1.972660 ATAGGGTGCCGAGAACTGCC 61.973 60.000 0.00 0.00 0.00 4.85
2323 3330 4.329545 GGGTGCCGAGAACTGCCA 62.330 66.667 0.00 0.00 0.00 4.92
2324 3331 3.050275 GGTGCCGAGAACTGCCAC 61.050 66.667 0.00 0.00 0.00 5.01
2325 3332 3.414700 GTGCCGAGAACTGCCACG 61.415 66.667 0.00 0.00 0.00 4.94
2326 3333 3.611674 TGCCGAGAACTGCCACGA 61.612 61.111 0.00 0.00 0.00 4.35
2327 3334 3.112709 GCCGAGAACTGCCACGAC 61.113 66.667 0.00 0.00 0.00 4.34
2328 3335 2.651361 CCGAGAACTGCCACGACT 59.349 61.111 0.00 0.00 0.00 4.18
2329 3336 1.444553 CCGAGAACTGCCACGACTC 60.445 63.158 0.00 0.00 0.00 3.36
2330 3337 1.581954 CGAGAACTGCCACGACTCT 59.418 57.895 0.00 0.00 0.00 3.24
2331 3338 0.730834 CGAGAACTGCCACGACTCTG 60.731 60.000 0.00 0.00 0.00 3.35
2332 3339 0.315568 GAGAACTGCCACGACTCTGT 59.684 55.000 0.00 0.00 0.00 3.41
2333 3340 1.540267 GAGAACTGCCACGACTCTGTA 59.460 52.381 0.00 0.00 0.00 2.74
2334 3341 1.542030 AGAACTGCCACGACTCTGTAG 59.458 52.381 0.00 0.00 0.00 2.74
2335 3342 0.603569 AACTGCCACGACTCTGTAGG 59.396 55.000 0.00 0.00 0.00 3.18
2336 3343 0.539901 ACTGCCACGACTCTGTAGGT 60.540 55.000 0.00 0.00 0.00 3.08
2337 3344 0.603569 CTGCCACGACTCTGTAGGTT 59.396 55.000 0.00 0.00 0.00 3.50
2338 3345 1.000955 CTGCCACGACTCTGTAGGTTT 59.999 52.381 0.00 0.00 0.00 3.27
2339 3346 1.414919 TGCCACGACTCTGTAGGTTTT 59.585 47.619 0.00 0.00 0.00 2.43
2340 3347 1.798813 GCCACGACTCTGTAGGTTTTG 59.201 52.381 0.00 0.00 0.00 2.44
2341 3348 2.547218 GCCACGACTCTGTAGGTTTTGA 60.547 50.000 0.00 0.00 0.00 2.69
2342 3349 3.864921 GCCACGACTCTGTAGGTTTTGAT 60.865 47.826 0.00 0.00 0.00 2.57
2343 3350 3.927142 CCACGACTCTGTAGGTTTTGATC 59.073 47.826 0.00 0.00 0.00 2.92
2344 3351 4.556233 CACGACTCTGTAGGTTTTGATCA 58.444 43.478 0.00 0.00 0.00 2.92
2345 3352 5.171476 CACGACTCTGTAGGTTTTGATCAT 58.829 41.667 0.00 0.00 0.00 2.45
2346 3353 6.330278 CACGACTCTGTAGGTTTTGATCATA 58.670 40.000 0.00 0.00 0.00 2.15
2347 3354 6.473778 CACGACTCTGTAGGTTTTGATCATAG 59.526 42.308 0.00 0.00 0.00 2.23
2348 3355 5.980116 CGACTCTGTAGGTTTTGATCATAGG 59.020 44.000 0.00 0.00 0.00 2.57
2349 3356 6.183360 CGACTCTGTAGGTTTTGATCATAGGA 60.183 42.308 0.00 0.00 0.00 2.94
2350 3357 7.118496 ACTCTGTAGGTTTTGATCATAGGAG 57.882 40.000 0.00 0.00 0.00 3.69
2351 3358 6.897966 ACTCTGTAGGTTTTGATCATAGGAGA 59.102 38.462 0.00 0.00 0.00 3.71
2352 3359 7.113658 TCTGTAGGTTTTGATCATAGGAGAC 57.886 40.000 0.00 0.00 0.00 3.36
2354 3361 6.878317 TGTAGGTTTTGATCATAGGAGACTG 58.122 40.000 0.00 0.00 43.88 3.51
2355 3362 4.775236 AGGTTTTGATCATAGGAGACTGC 58.225 43.478 0.00 0.00 43.88 4.40
2356 3363 4.225942 AGGTTTTGATCATAGGAGACTGCA 59.774 41.667 0.00 0.00 43.88 4.41
2357 3364 4.943705 GGTTTTGATCATAGGAGACTGCAA 59.056 41.667 0.00 0.00 43.88 4.08
2358 3365 5.415701 GGTTTTGATCATAGGAGACTGCAAA 59.584 40.000 0.00 0.00 43.88 3.68
2359 3366 6.096001 GGTTTTGATCATAGGAGACTGCAAAT 59.904 38.462 0.00 0.00 43.88 2.32
2360 3367 6.688637 TTTGATCATAGGAGACTGCAAATG 57.311 37.500 0.00 0.03 43.88 2.32
2361 3368 5.619132 TGATCATAGGAGACTGCAAATGA 57.381 39.130 12.33 12.33 43.88 2.57
2362 3369 5.993055 TGATCATAGGAGACTGCAAATGAA 58.007 37.500 13.46 0.05 43.88 2.57
2363 3370 6.053650 TGATCATAGGAGACTGCAAATGAAG 58.946 40.000 13.46 0.00 43.88 3.02
2364 3371 4.194640 TCATAGGAGACTGCAAATGAAGC 58.805 43.478 8.84 0.00 43.88 3.86
2365 3372 2.875094 AGGAGACTGCAAATGAAGCT 57.125 45.000 0.00 0.00 41.13 3.74
2366 3373 3.151912 AGGAGACTGCAAATGAAGCTT 57.848 42.857 0.00 0.00 41.13 3.74
2367 3374 2.818432 AGGAGACTGCAAATGAAGCTTG 59.182 45.455 2.10 0.00 41.13 4.01
2368 3375 2.094854 GGAGACTGCAAATGAAGCTTGG 60.095 50.000 2.10 0.00 0.00 3.61
2369 3376 2.816087 GAGACTGCAAATGAAGCTTGGA 59.184 45.455 2.10 0.00 0.00 3.53
2370 3377 3.428532 AGACTGCAAATGAAGCTTGGAT 58.571 40.909 2.10 0.00 0.00 3.41
2371 3378 3.192844 AGACTGCAAATGAAGCTTGGATG 59.807 43.478 2.10 0.00 0.00 3.51
2372 3379 2.232941 ACTGCAAATGAAGCTTGGATGG 59.767 45.455 2.10 0.00 0.00 3.51
2373 3380 2.232941 CTGCAAATGAAGCTTGGATGGT 59.767 45.455 2.10 0.00 0.00 3.55
2374 3381 2.633967 TGCAAATGAAGCTTGGATGGTT 59.366 40.909 2.10 0.00 0.00 3.67
2375 3382 3.256558 GCAAATGAAGCTTGGATGGTTC 58.743 45.455 2.10 0.00 42.67 3.62
2380 3387 3.499338 TGAAGCTTGGATGGTTCATTGT 58.501 40.909 2.10 0.00 45.62 2.71
2381 3388 4.661222 TGAAGCTTGGATGGTTCATTGTA 58.339 39.130 2.10 0.00 45.62 2.41
2382 3389 4.701651 TGAAGCTTGGATGGTTCATTGTAG 59.298 41.667 2.10 0.00 45.62 2.74
2383 3390 3.624777 AGCTTGGATGGTTCATTGTAGG 58.375 45.455 0.00 0.00 0.00 3.18
2384 3391 3.010584 AGCTTGGATGGTTCATTGTAGGT 59.989 43.478 0.00 0.00 0.00 3.08
2385 3392 3.378427 GCTTGGATGGTTCATTGTAGGTC 59.622 47.826 0.00 0.00 0.00 3.85
2386 3393 4.588899 CTTGGATGGTTCATTGTAGGTCA 58.411 43.478 0.00 0.00 0.00 4.02
2387 3394 4.220693 TGGATGGTTCATTGTAGGTCAG 57.779 45.455 0.00 0.00 0.00 3.51
2388 3395 2.945668 GGATGGTTCATTGTAGGTCAGC 59.054 50.000 0.00 0.00 0.00 4.26
2389 3396 2.489938 TGGTTCATTGTAGGTCAGCC 57.510 50.000 0.00 0.00 0.00 4.85
2390 3397 1.702401 TGGTTCATTGTAGGTCAGCCA 59.298 47.619 0.00 0.00 37.19 4.75
2391 3398 2.084546 GGTTCATTGTAGGTCAGCCAC 58.915 52.381 0.00 0.00 37.19 5.01
2392 3399 2.552155 GGTTCATTGTAGGTCAGCCACA 60.552 50.000 0.00 0.00 37.19 4.17
2393 3400 3.146066 GTTCATTGTAGGTCAGCCACAA 58.854 45.455 0.00 0.00 38.84 3.33
2394 3401 3.500448 TCATTGTAGGTCAGCCACAAA 57.500 42.857 0.00 0.00 38.38 2.83
2395 3402 3.411446 TCATTGTAGGTCAGCCACAAAG 58.589 45.455 0.00 0.00 38.38 2.77
2396 3403 1.604604 TTGTAGGTCAGCCACAAAGC 58.395 50.000 0.00 0.00 34.91 3.51
2397 3404 0.472044 TGTAGGTCAGCCACAAAGCA 59.528 50.000 0.00 0.00 37.19 3.91
2398 3405 1.160137 GTAGGTCAGCCACAAAGCAG 58.840 55.000 0.00 0.00 37.19 4.24
2399 3406 0.764890 TAGGTCAGCCACAAAGCAGT 59.235 50.000 0.00 0.00 37.19 4.40
2400 3407 0.820891 AGGTCAGCCACAAAGCAGTG 60.821 55.000 0.00 0.00 39.21 3.66
2401 3408 1.008079 GTCAGCCACAAAGCAGTGC 60.008 57.895 7.13 7.13 38.18 4.40
2402 3409 1.453562 TCAGCCACAAAGCAGTGCA 60.454 52.632 19.20 0.00 38.18 4.57
2403 3410 1.036481 TCAGCCACAAAGCAGTGCAA 61.036 50.000 19.20 0.00 38.18 4.08
2404 3411 0.596600 CAGCCACAAAGCAGTGCAAG 60.597 55.000 19.20 8.89 38.18 4.01
2405 3412 1.300388 GCCACAAAGCAGTGCAAGG 60.300 57.895 19.20 11.90 38.18 3.61
2406 3413 1.364901 CCACAAAGCAGTGCAAGGG 59.635 57.895 19.20 7.32 38.18 3.95
2407 3414 1.364901 CACAAAGCAGTGCAAGGGG 59.635 57.895 19.20 2.55 32.04 4.79
2408 3415 2.341176 CAAAGCAGTGCAAGGGGC 59.659 61.111 19.20 0.00 45.13 5.80
2418 3425 3.102090 GCAAGGGGCAACTCCTATC 57.898 57.895 0.00 0.00 43.97 2.08
2419 3426 0.815615 GCAAGGGGCAACTCCTATCG 60.816 60.000 0.00 0.00 43.97 2.92
2420 3427 0.815615 CAAGGGGCAACTCCTATCGC 60.816 60.000 0.00 0.00 38.59 4.58
2421 3428 0.983378 AAGGGGCAACTCCTATCGCT 60.983 55.000 0.00 0.00 38.59 4.93
2422 3429 0.105658 AGGGGCAACTCCTATCGCTA 60.106 55.000 0.00 0.00 38.59 4.26
2423 3430 0.977395 GGGGCAACTCCTATCGCTAT 59.023 55.000 0.00 0.00 34.39 2.97
2424 3431 2.176889 GGGGCAACTCCTATCGCTATA 58.823 52.381 0.00 0.00 34.39 1.31
2425 3432 2.166664 GGGGCAACTCCTATCGCTATAG 59.833 54.545 0.00 0.00 35.73 1.31
2432 3439 3.300032 CTATCGCTATAGGGCCCCA 57.700 57.895 21.43 4.63 32.81 4.96
2433 3440 1.568504 CTATCGCTATAGGGCCCCAA 58.431 55.000 21.43 7.74 32.81 4.12
2434 3441 1.906574 CTATCGCTATAGGGCCCCAAA 59.093 52.381 21.43 4.47 32.81 3.28
2435 3442 1.145571 ATCGCTATAGGGCCCCAAAA 58.854 50.000 21.43 1.27 0.00 2.44
2436 3443 0.920438 TCGCTATAGGGCCCCAAAAA 59.080 50.000 21.43 0.00 0.00 1.94
2437 3444 1.497286 TCGCTATAGGGCCCCAAAAAT 59.503 47.619 21.43 7.30 0.00 1.82
2438 3445 1.613437 CGCTATAGGGCCCCAAAAATG 59.387 52.381 21.43 3.59 0.00 2.32
2439 3446 2.751479 CGCTATAGGGCCCCAAAAATGA 60.751 50.000 21.43 0.00 0.00 2.57
2440 3447 3.510459 GCTATAGGGCCCCAAAAATGAT 58.490 45.455 21.43 0.00 0.00 2.45
2441 3448 3.259123 GCTATAGGGCCCCAAAAATGATG 59.741 47.826 21.43 0.00 0.00 3.07
2442 3449 2.938428 TAGGGCCCCAAAAATGATGT 57.062 45.000 21.43 0.00 0.00 3.06
2443 3450 2.938428 AGGGCCCCAAAAATGATGTA 57.062 45.000 21.43 0.00 0.00 2.29
2444 3451 2.466846 AGGGCCCCAAAAATGATGTAC 58.533 47.619 21.43 0.00 0.00 2.90
2445 3452 2.183679 GGGCCCCAAAAATGATGTACA 58.816 47.619 12.23 0.00 0.00 2.90
2446 3453 2.569404 GGGCCCCAAAAATGATGTACAA 59.431 45.455 12.23 0.00 0.00 2.41
2447 3454 3.369366 GGGCCCCAAAAATGATGTACAAG 60.369 47.826 12.23 0.00 0.00 3.16
2448 3455 3.513515 GGCCCCAAAAATGATGTACAAGA 59.486 43.478 0.00 0.00 0.00 3.02
2449 3456 4.381932 GGCCCCAAAAATGATGTACAAGAG 60.382 45.833 0.00 0.00 0.00 2.85
2450 3457 4.747810 CCCCAAAAATGATGTACAAGAGC 58.252 43.478 0.00 0.00 0.00 4.09
2451 3458 4.220382 CCCCAAAAATGATGTACAAGAGCA 59.780 41.667 0.00 0.00 0.00 4.26
2452 3459 5.105228 CCCCAAAAATGATGTACAAGAGCAT 60.105 40.000 0.00 0.00 0.00 3.79
2453 3460 6.096705 CCCCAAAAATGATGTACAAGAGCATA 59.903 38.462 0.00 0.00 0.00 3.14
2454 3461 7.201938 CCCCAAAAATGATGTACAAGAGCATAT 60.202 37.037 0.00 0.00 0.00 1.78
2455 3462 7.650504 CCCAAAAATGATGTACAAGAGCATATG 59.349 37.037 0.00 0.00 0.00 1.78
2456 3463 8.407832 CCAAAAATGATGTACAAGAGCATATGA 58.592 33.333 6.97 0.00 0.00 2.15
2457 3464 9.447040 CAAAAATGATGTACAAGAGCATATGAG 57.553 33.333 6.97 0.00 0.00 2.90
2458 3465 8.969260 AAAATGATGTACAAGAGCATATGAGA 57.031 30.769 6.97 0.00 0.00 3.27
2459 3466 8.969260 AAATGATGTACAAGAGCATATGAGAA 57.031 30.769 6.97 0.00 0.00 2.87
2460 3467 9.570468 AAATGATGTACAAGAGCATATGAGAAT 57.430 29.630 6.97 0.00 0.00 2.40
2461 3468 9.570468 AATGATGTACAAGAGCATATGAGAATT 57.430 29.630 6.97 0.00 0.00 2.17
2462 3469 8.374327 TGATGTACAAGAGCATATGAGAATTG 57.626 34.615 6.97 7.72 0.00 2.32
2463 3470 8.206189 TGATGTACAAGAGCATATGAGAATTGA 58.794 33.333 6.97 0.00 0.00 2.57
2464 3471 8.604640 ATGTACAAGAGCATATGAGAATTGAG 57.395 34.615 6.97 0.00 0.00 3.02
2465 3472 7.785033 TGTACAAGAGCATATGAGAATTGAGA 58.215 34.615 6.97 0.00 0.00 3.27
2466 3473 7.924947 TGTACAAGAGCATATGAGAATTGAGAG 59.075 37.037 6.97 0.00 0.00 3.20
2467 3474 6.289834 ACAAGAGCATATGAGAATTGAGAGG 58.710 40.000 6.97 0.00 0.00 3.69
2468 3475 6.099413 ACAAGAGCATATGAGAATTGAGAGGA 59.901 38.462 6.97 0.00 0.00 3.71
2469 3476 6.744175 AGAGCATATGAGAATTGAGAGGAA 57.256 37.500 6.97 0.00 0.00 3.36
2470 3477 7.134362 AGAGCATATGAGAATTGAGAGGAAA 57.866 36.000 6.97 0.00 0.00 3.13
2471 3478 7.218614 AGAGCATATGAGAATTGAGAGGAAAG 58.781 38.462 6.97 0.00 0.00 2.62
2472 3479 5.764192 AGCATATGAGAATTGAGAGGAAAGC 59.236 40.000 6.97 0.00 0.00 3.51
2473 3480 5.764192 GCATATGAGAATTGAGAGGAAAGCT 59.236 40.000 6.97 0.00 0.00 3.74
2474 3481 6.073112 GCATATGAGAATTGAGAGGAAAGCTC 60.073 42.308 6.97 0.00 0.00 4.09
2475 3482 4.213564 TGAGAATTGAGAGGAAAGCTCC 57.786 45.455 0.00 0.00 42.81 4.70
2476 3483 3.054802 TGAGAATTGAGAGGAAAGCTCCC 60.055 47.826 0.00 0.00 43.64 4.30
2477 3484 2.240921 AGAATTGAGAGGAAAGCTCCCC 59.759 50.000 1.81 0.00 43.64 4.81
2478 3485 1.673767 ATTGAGAGGAAAGCTCCCCA 58.326 50.000 7.05 0.00 43.64 4.96
2479 3486 1.444933 TTGAGAGGAAAGCTCCCCAA 58.555 50.000 7.05 0.61 43.64 4.12
2480 3487 1.673767 TGAGAGGAAAGCTCCCCAAT 58.326 50.000 7.05 0.00 43.64 3.16
2481 3488 2.845659 TGAGAGGAAAGCTCCCCAATA 58.154 47.619 7.05 0.00 43.64 1.90
2482 3489 3.397527 TGAGAGGAAAGCTCCCCAATAT 58.602 45.455 7.05 0.00 43.64 1.28
2483 3490 4.566837 TGAGAGGAAAGCTCCCCAATATA 58.433 43.478 7.05 0.00 43.64 0.86
2484 3491 5.165652 TGAGAGGAAAGCTCCCCAATATAT 58.834 41.667 7.05 0.00 43.64 0.86
2485 3492 6.331032 TGAGAGGAAAGCTCCCCAATATATA 58.669 40.000 7.05 0.00 43.64 0.86
2486 3493 6.441924 TGAGAGGAAAGCTCCCCAATATATAG 59.558 42.308 7.05 0.00 43.64 1.31
2487 3494 6.575411 AGAGGAAAGCTCCCCAATATATAGA 58.425 40.000 7.05 0.00 43.64 1.98
2488 3495 7.025620 AGAGGAAAGCTCCCCAATATATAGAA 58.974 38.462 7.05 0.00 43.64 2.10
2489 3496 7.181845 AGAGGAAAGCTCCCCAATATATAGAAG 59.818 40.741 7.05 0.00 43.64 2.85
2490 3497 7.025620 AGGAAAGCTCCCCAATATATAGAAGA 58.974 38.462 7.05 0.00 43.64 2.87
2491 3498 7.686355 AGGAAAGCTCCCCAATATATAGAAGAT 59.314 37.037 7.05 0.00 43.64 2.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
34 35 0.468226 AAAAGACCTGTCAGGACGCA 59.532 50.000 26.18 0.00 37.67 5.24
42 43 3.498397 TCATCGAAGCAAAAAGACCTGTC 59.502 43.478 0.00 0.00 0.00 3.51
59 60 4.340894 TCAAAAAGCCGAAGAATCATCG 57.659 40.909 0.43 0.43 39.92 3.84
94 95 1.043816 CAGCGATAGGACATCTGGGT 58.956 55.000 0.00 0.00 0.00 4.51
127 128 2.478831 GGCCAATCAAAAACGCAAGAA 58.521 42.857 0.00 0.00 43.62 2.52
179 180 2.848858 CGGCCAACAGCAGCAAAGT 61.849 57.895 2.24 0.00 46.50 2.66
206 208 3.933886 TCCCAAAGAGATCCTAGCAGAT 58.066 45.455 0.00 0.00 0.00 2.90
312 314 5.007921 TGCCATACACATGATCAGAAAATCG 59.992 40.000 0.00 0.00 33.67 3.34
338 340 1.694844 TATCATGCATGCAACCCCAG 58.305 50.000 26.68 10.51 0.00 4.45
365 367 1.068083 ATAGTCCCATCACGCAGCG 59.932 57.895 14.82 14.82 0.00 5.18
435 443 6.318396 CAGTGGGAAAAACAAATCAAAACCAT 59.682 34.615 0.00 0.00 0.00 3.55
436 444 5.645497 CAGTGGGAAAAACAAATCAAAACCA 59.355 36.000 0.00 0.00 0.00 3.67
460 659 4.745649 ACGTGGCATAACTTAGAGAAGAC 58.254 43.478 0.00 0.00 36.45 3.01
471 670 3.119990 ACAACAGCAATACGTGGCATAAC 60.120 43.478 0.00 0.00 0.00 1.89
625 829 7.228706 ACACCAAATCTTTCTATTTATAGGGCG 59.771 37.037 0.00 0.00 0.00 6.13
1135 1877 3.518068 GTGTGCCCATAAGCCCGC 61.518 66.667 0.00 0.00 0.00 6.13
1276 2220 1.886542 GTGGAATTTCTTGGCCGACTT 59.113 47.619 0.00 0.00 0.00 3.01
1436 2384 2.342279 CACCGTCCACGTCCATGT 59.658 61.111 0.00 0.00 37.74 3.21
1504 2471 2.279517 GTCGGGCATGGTAGCGAG 60.280 66.667 0.00 0.00 34.64 5.03
1579 2570 4.070552 GGAGTGAGACGCGGCCTT 62.071 66.667 9.25 0.00 0.00 4.35
1964 2961 0.250338 ACACTTTTCCTCGCCACCTC 60.250 55.000 0.00 0.00 0.00 3.85
1981 2978 2.626780 CGCGTCTCCAGGTCTCACA 61.627 63.158 0.00 0.00 0.00 3.58
2119 3126 1.619807 TTTCTAGGTACGGCCCTGGC 61.620 60.000 0.00 0.00 38.26 4.85
2120 3127 0.906775 TTTTCTAGGTACGGCCCTGG 59.093 55.000 0.00 2.83 38.26 4.45
2121 3128 2.169769 TGATTTTCTAGGTACGGCCCTG 59.830 50.000 0.00 0.00 38.26 4.45
2122 3129 2.434702 CTGATTTTCTAGGTACGGCCCT 59.565 50.000 0.00 0.56 38.26 5.19
2123 3130 2.433239 TCTGATTTTCTAGGTACGGCCC 59.567 50.000 0.00 0.00 38.26 5.80
2124 3131 3.492829 CCTCTGATTTTCTAGGTACGGCC 60.493 52.174 0.00 0.00 37.58 6.13
2125 3132 3.718815 CCTCTGATTTTCTAGGTACGGC 58.281 50.000 0.00 0.00 0.00 5.68
2126 3133 3.492829 GGCCTCTGATTTTCTAGGTACGG 60.493 52.174 0.00 0.00 0.00 4.02
2127 3134 3.492829 GGGCCTCTGATTTTCTAGGTACG 60.493 52.174 0.84 0.00 0.00 3.67
2128 3135 3.492829 CGGGCCTCTGATTTTCTAGGTAC 60.493 52.174 0.84 0.00 0.00 3.34
2129 3136 2.698797 CGGGCCTCTGATTTTCTAGGTA 59.301 50.000 0.84 0.00 0.00 3.08
2130 3137 1.486726 CGGGCCTCTGATTTTCTAGGT 59.513 52.381 0.84 0.00 0.00 3.08
2131 3138 1.202698 CCGGGCCTCTGATTTTCTAGG 60.203 57.143 0.84 0.00 0.00 3.02
2132 3139 1.762957 TCCGGGCCTCTGATTTTCTAG 59.237 52.381 0.84 0.00 0.00 2.43
2133 3140 1.762957 CTCCGGGCCTCTGATTTTCTA 59.237 52.381 0.84 0.00 0.00 2.10
2134 3141 0.543749 CTCCGGGCCTCTGATTTTCT 59.456 55.000 0.84 0.00 0.00 2.52
2135 3142 1.098129 GCTCCGGGCCTCTGATTTTC 61.098 60.000 0.84 0.00 34.27 2.29
2136 3143 1.077429 GCTCCGGGCCTCTGATTTT 60.077 57.895 0.84 0.00 34.27 1.82
2137 3144 2.592308 GCTCCGGGCCTCTGATTT 59.408 61.111 0.84 0.00 34.27 2.17
2138 3145 3.854669 CGCTCCGGGCCTCTGATT 61.855 66.667 0.84 0.00 37.74 2.57
2139 3146 4.841617 TCGCTCCGGGCCTCTGAT 62.842 66.667 0.84 0.00 37.74 2.90
2141 3148 3.798954 GATTCGCTCCGGGCCTCTG 62.799 68.421 0.84 0.00 37.74 3.35
2142 3149 3.541713 GATTCGCTCCGGGCCTCT 61.542 66.667 0.84 0.00 37.74 3.69
2143 3150 2.869503 TTTGATTCGCTCCGGGCCTC 62.870 60.000 0.84 1.14 37.74 4.70
2144 3151 2.478335 TTTTGATTCGCTCCGGGCCT 62.478 55.000 0.84 0.00 37.74 5.19
2145 3152 1.384222 ATTTTGATTCGCTCCGGGCC 61.384 55.000 0.00 0.00 37.74 5.80
2146 3153 0.455815 AATTTTGATTCGCTCCGGGC 59.544 50.000 0.00 2.69 37.64 6.13
2147 3154 2.939460 AAATTTTGATTCGCTCCGGG 57.061 45.000 0.00 0.00 0.00 5.73
2148 3155 3.792124 GCCTAAATTTTGATTCGCTCCGG 60.792 47.826 0.00 0.00 0.00 5.14
2149 3156 3.363178 GCCTAAATTTTGATTCGCTCCG 58.637 45.455 0.00 0.00 0.00 4.63
2150 3157 3.490933 GGGCCTAAATTTTGATTCGCTCC 60.491 47.826 0.84 0.00 0.00 4.70
2151 3158 3.381590 AGGGCCTAAATTTTGATTCGCTC 59.618 43.478 2.82 0.00 0.00 5.03
2152 3159 3.131046 CAGGGCCTAAATTTTGATTCGCT 59.869 43.478 5.28 0.00 0.00 4.93
2153 3160 3.130340 TCAGGGCCTAAATTTTGATTCGC 59.870 43.478 5.28 0.00 0.00 4.70
2154 3161 4.157656 TGTCAGGGCCTAAATTTTGATTCG 59.842 41.667 5.28 0.00 0.00 3.34
2155 3162 5.659440 TGTCAGGGCCTAAATTTTGATTC 57.341 39.130 5.28 0.00 0.00 2.52
2156 3163 6.625532 AATGTCAGGGCCTAAATTTTGATT 57.374 33.333 5.28 0.00 0.00 2.57
2157 3164 6.213195 TCAAATGTCAGGGCCTAAATTTTGAT 59.787 34.615 20.79 2.24 0.00 2.57
2158 3165 5.541868 TCAAATGTCAGGGCCTAAATTTTGA 59.458 36.000 20.79 20.79 0.00 2.69
2159 3166 5.792741 TCAAATGTCAGGGCCTAAATTTTG 58.207 37.500 5.28 14.31 0.00 2.44
2160 3167 6.432403 TTCAAATGTCAGGGCCTAAATTTT 57.568 33.333 5.28 1.57 0.00 1.82
2161 3168 6.432403 TTTCAAATGTCAGGGCCTAAATTT 57.568 33.333 5.28 9.97 0.00 1.82
2162 3169 5.046376 CCTTTCAAATGTCAGGGCCTAAATT 60.046 40.000 5.28 3.52 0.00 1.82
2163 3170 4.467438 CCTTTCAAATGTCAGGGCCTAAAT 59.533 41.667 5.28 0.00 0.00 1.40
2164 3171 3.831911 CCTTTCAAATGTCAGGGCCTAAA 59.168 43.478 5.28 0.00 0.00 1.85
2165 3172 3.430453 CCTTTCAAATGTCAGGGCCTAA 58.570 45.455 5.28 0.00 0.00 2.69
2166 3173 2.291540 CCCTTTCAAATGTCAGGGCCTA 60.292 50.000 5.28 0.00 39.80 3.93
2167 3174 1.550869 CCCTTTCAAATGTCAGGGCCT 60.551 52.381 0.00 0.00 39.80 5.19
2168 3175 0.897621 CCCTTTCAAATGTCAGGGCC 59.102 55.000 0.00 0.00 39.80 5.80
2171 3178 0.527565 CCGCCCTTTCAAATGTCAGG 59.472 55.000 0.00 0.00 0.00 3.86
2172 3179 1.533625 TCCGCCCTTTCAAATGTCAG 58.466 50.000 0.00 0.00 0.00 3.51
2173 3180 2.214376 ATCCGCCCTTTCAAATGTCA 57.786 45.000 0.00 0.00 0.00 3.58
2174 3181 4.712122 TTAATCCGCCCTTTCAAATGTC 57.288 40.909 0.00 0.00 0.00 3.06
2175 3182 5.476091 TTTTAATCCGCCCTTTCAAATGT 57.524 34.783 0.00 0.00 0.00 2.71
2176 3183 5.874261 ACATTTTAATCCGCCCTTTCAAATG 59.126 36.000 0.00 0.00 36.74 2.32
2177 3184 6.048732 ACATTTTAATCCGCCCTTTCAAAT 57.951 33.333 0.00 0.00 0.00 2.32
2178 3185 5.476091 ACATTTTAATCCGCCCTTTCAAA 57.524 34.783 0.00 0.00 0.00 2.69
2179 3186 6.783708 ATACATTTTAATCCGCCCTTTCAA 57.216 33.333 0.00 0.00 0.00 2.69
2180 3187 7.012894 CACTATACATTTTAATCCGCCCTTTCA 59.987 37.037 0.00 0.00 0.00 2.69
2181 3188 7.012989 ACACTATACATTTTAATCCGCCCTTTC 59.987 37.037 0.00 0.00 0.00 2.62
2182 3189 6.831868 ACACTATACATTTTAATCCGCCCTTT 59.168 34.615 0.00 0.00 0.00 3.11
2183 3190 6.262273 CACACTATACATTTTAATCCGCCCTT 59.738 38.462 0.00 0.00 0.00 3.95
2184 3191 5.763204 CACACTATACATTTTAATCCGCCCT 59.237 40.000 0.00 0.00 0.00 5.19
2185 3192 5.529800 ACACACTATACATTTTAATCCGCCC 59.470 40.000 0.00 0.00 0.00 6.13
2186 3193 6.613755 ACACACTATACATTTTAATCCGCC 57.386 37.500 0.00 0.00 0.00 6.13
2211 3218 9.342308 CTGGTGGTGTAATTCTATATGAACATT 57.658 33.333 0.00 0.00 37.52 2.71
2212 3219 8.713971 TCTGGTGGTGTAATTCTATATGAACAT 58.286 33.333 0.00 0.00 37.52 2.71
2213 3220 8.084985 TCTGGTGGTGTAATTCTATATGAACA 57.915 34.615 0.00 0.00 37.52 3.18
2214 3221 8.993121 CATCTGGTGGTGTAATTCTATATGAAC 58.007 37.037 0.00 0.00 37.52 3.18
2215 3222 7.661437 GCATCTGGTGGTGTAATTCTATATGAA 59.339 37.037 0.00 0.00 39.24 2.57
2216 3223 7.161404 GCATCTGGTGGTGTAATTCTATATGA 58.839 38.462 0.00 0.00 0.00 2.15
2217 3224 6.936335 TGCATCTGGTGGTGTAATTCTATATG 59.064 38.462 0.00 0.00 0.00 1.78
2218 3225 6.936900 GTGCATCTGGTGGTGTAATTCTATAT 59.063 38.462 0.00 0.00 0.00 0.86
2219 3226 6.126911 TGTGCATCTGGTGGTGTAATTCTATA 60.127 38.462 0.00 0.00 0.00 1.31
2220 3227 5.126067 GTGCATCTGGTGGTGTAATTCTAT 58.874 41.667 0.00 0.00 0.00 1.98
2221 3228 4.019771 TGTGCATCTGGTGGTGTAATTCTA 60.020 41.667 0.00 0.00 0.00 2.10
2222 3229 3.244875 TGTGCATCTGGTGGTGTAATTCT 60.245 43.478 0.00 0.00 0.00 2.40
2223 3230 3.081061 TGTGCATCTGGTGGTGTAATTC 58.919 45.455 0.00 0.00 0.00 2.17
2224 3231 3.153369 TGTGCATCTGGTGGTGTAATT 57.847 42.857 0.00 0.00 0.00 1.40
2225 3232 2.877097 TGTGCATCTGGTGGTGTAAT 57.123 45.000 0.00 0.00 0.00 1.89
2226 3233 2.158682 ACTTGTGCATCTGGTGGTGTAA 60.159 45.455 0.00 0.00 0.00 2.41
2227 3234 1.419762 ACTTGTGCATCTGGTGGTGTA 59.580 47.619 0.00 0.00 0.00 2.90
2228 3235 0.183492 ACTTGTGCATCTGGTGGTGT 59.817 50.000 0.00 0.00 0.00 4.16
2229 3236 1.267806 GAACTTGTGCATCTGGTGGTG 59.732 52.381 0.00 0.00 0.00 4.17
2230 3237 1.133823 TGAACTTGTGCATCTGGTGGT 60.134 47.619 0.00 0.00 0.00 4.16
2231 3238 1.608055 TGAACTTGTGCATCTGGTGG 58.392 50.000 0.00 0.00 0.00 4.61
2232 3239 2.880268 TCTTGAACTTGTGCATCTGGTG 59.120 45.455 0.00 0.00 0.00 4.17
2233 3240 3.213206 TCTTGAACTTGTGCATCTGGT 57.787 42.857 0.00 0.00 0.00 4.00
2234 3241 4.276678 TCTTTCTTGAACTTGTGCATCTGG 59.723 41.667 0.00 0.00 0.00 3.86
2235 3242 5.428496 TCTTTCTTGAACTTGTGCATCTG 57.572 39.130 0.00 0.00 0.00 2.90
2236 3243 6.645790 ATTCTTTCTTGAACTTGTGCATCT 57.354 33.333 0.00 0.00 0.00 2.90
2237 3244 7.862372 TGTAATTCTTTCTTGAACTTGTGCATC 59.138 33.333 0.00 0.00 0.00 3.91
2238 3245 7.649306 GTGTAATTCTTTCTTGAACTTGTGCAT 59.351 33.333 0.00 0.00 0.00 3.96
2239 3246 6.972328 GTGTAATTCTTTCTTGAACTTGTGCA 59.028 34.615 0.00 0.00 0.00 4.57
2240 3247 6.417930 GGTGTAATTCTTTCTTGAACTTGTGC 59.582 38.462 0.00 0.00 0.00 4.57
2241 3248 7.432252 GTGGTGTAATTCTTTCTTGAACTTGTG 59.568 37.037 0.00 0.00 0.00 3.33
2242 3249 7.339466 AGTGGTGTAATTCTTTCTTGAACTTGT 59.661 33.333 0.00 0.00 0.00 3.16
2243 3250 7.645340 CAGTGGTGTAATTCTTTCTTGAACTTG 59.355 37.037 0.00 0.00 0.00 3.16
2244 3251 7.201821 CCAGTGGTGTAATTCTTTCTTGAACTT 60.202 37.037 0.00 0.00 0.00 2.66
2245 3252 6.263168 CCAGTGGTGTAATTCTTTCTTGAACT 59.737 38.462 0.00 0.00 0.00 3.01
2246 3253 6.262273 TCCAGTGGTGTAATTCTTTCTTGAAC 59.738 38.462 9.54 0.00 0.00 3.18
2247 3254 6.361433 TCCAGTGGTGTAATTCTTTCTTGAA 58.639 36.000 9.54 0.00 0.00 2.69
2248 3255 5.935945 TCCAGTGGTGTAATTCTTTCTTGA 58.064 37.500 9.54 0.00 0.00 3.02
2249 3256 6.207417 ACATCCAGTGGTGTAATTCTTTCTTG 59.793 38.462 9.54 0.00 0.00 3.02
2250 3257 6.306987 ACATCCAGTGGTGTAATTCTTTCTT 58.693 36.000 9.54 0.00 0.00 2.52
2251 3258 5.880901 ACATCCAGTGGTGTAATTCTTTCT 58.119 37.500 9.54 0.00 0.00 2.52
2252 3259 6.879458 AGTACATCCAGTGGTGTAATTCTTTC 59.121 38.462 19.69 10.19 33.05 2.62
2253 3260 6.779860 AGTACATCCAGTGGTGTAATTCTTT 58.220 36.000 19.69 5.81 33.05 2.52
2254 3261 6.374417 AGTACATCCAGTGGTGTAATTCTT 57.626 37.500 19.69 7.00 33.05 2.52
2255 3262 6.668283 ACTAGTACATCCAGTGGTGTAATTCT 59.332 38.462 21.48 17.03 33.05 2.40
2256 3263 6.875076 ACTAGTACATCCAGTGGTGTAATTC 58.125 40.000 21.48 12.78 33.05 2.17
2257 3264 6.668283 AGACTAGTACATCCAGTGGTGTAATT 59.332 38.462 21.48 16.06 33.05 1.40
2258 3265 6.195700 AGACTAGTACATCCAGTGGTGTAAT 58.804 40.000 20.65 20.65 33.05 1.89
2259 3266 5.577100 AGACTAGTACATCCAGTGGTGTAA 58.423 41.667 19.69 9.60 33.05 2.41
2260 3267 5.188988 AGACTAGTACATCCAGTGGTGTA 57.811 43.478 9.54 13.73 0.00 2.90
2261 3268 4.048970 AGACTAGTACATCCAGTGGTGT 57.951 45.455 17.71 17.71 0.00 4.16
2262 3269 5.194432 AGTAGACTAGTACATCCAGTGGTG 58.806 45.833 9.54 9.46 0.00 4.17
2263 3270 5.453866 AGTAGACTAGTACATCCAGTGGT 57.546 43.478 9.54 0.00 0.00 4.16
2264 3271 9.570468 TTATAAGTAGACTAGTACATCCAGTGG 57.430 37.037 1.40 1.40 0.00 4.00
2299 3306 3.081804 CAGTTCTCGGCACCCTATTTTT 58.918 45.455 0.00 0.00 0.00 1.94
2300 3307 2.711542 CAGTTCTCGGCACCCTATTTT 58.288 47.619 0.00 0.00 0.00 1.82
2301 3308 1.679032 GCAGTTCTCGGCACCCTATTT 60.679 52.381 0.00 0.00 35.02 1.40
2302 3309 0.107654 GCAGTTCTCGGCACCCTATT 60.108 55.000 0.00 0.00 35.02 1.73
2303 3310 1.522569 GCAGTTCTCGGCACCCTAT 59.477 57.895 0.00 0.00 35.02 2.57
2304 3311 2.656069 GGCAGTTCTCGGCACCCTA 61.656 63.158 0.00 0.00 36.53 3.53
2305 3312 4.021925 GGCAGTTCTCGGCACCCT 62.022 66.667 0.00 0.00 36.53 4.34
2306 3313 4.329545 TGGCAGTTCTCGGCACCC 62.330 66.667 0.00 0.00 36.53 4.61
2309 3316 3.611674 TCGTGGCAGTTCTCGGCA 61.612 61.111 0.00 0.00 36.53 5.69
2310 3317 3.112709 GTCGTGGCAGTTCTCGGC 61.113 66.667 0.00 0.00 0.00 5.54
2311 3318 1.444553 GAGTCGTGGCAGTTCTCGG 60.445 63.158 0.00 0.00 0.00 4.63
2312 3319 0.730834 CAGAGTCGTGGCAGTTCTCG 60.731 60.000 0.00 0.00 0.00 4.04
2313 3320 0.315568 ACAGAGTCGTGGCAGTTCTC 59.684 55.000 0.00 0.00 0.00 2.87
2314 3321 1.542030 CTACAGAGTCGTGGCAGTTCT 59.458 52.381 0.00 0.00 0.00 3.01
2315 3322 1.402984 CCTACAGAGTCGTGGCAGTTC 60.403 57.143 0.00 0.00 0.00 3.01
2316 3323 0.603569 CCTACAGAGTCGTGGCAGTT 59.396 55.000 0.00 0.00 0.00 3.16
2317 3324 0.539901 ACCTACAGAGTCGTGGCAGT 60.540 55.000 0.00 0.00 0.00 4.40
2318 3325 0.603569 AACCTACAGAGTCGTGGCAG 59.396 55.000 0.00 0.00 0.00 4.85
2319 3326 1.045407 AAACCTACAGAGTCGTGGCA 58.955 50.000 0.00 0.00 0.00 4.92
2320 3327 1.798813 CAAAACCTACAGAGTCGTGGC 59.201 52.381 0.00 0.00 0.00 5.01
2321 3328 3.380479 TCAAAACCTACAGAGTCGTGG 57.620 47.619 0.00 0.00 0.00 4.94
2322 3329 4.556233 TGATCAAAACCTACAGAGTCGTG 58.444 43.478 0.00 0.00 0.00 4.35
2323 3330 4.866508 TGATCAAAACCTACAGAGTCGT 57.133 40.909 0.00 0.00 0.00 4.34
2324 3331 5.980116 CCTATGATCAAAACCTACAGAGTCG 59.020 44.000 0.00 0.00 0.00 4.18
2325 3332 7.068839 TCTCCTATGATCAAAACCTACAGAGTC 59.931 40.741 0.00 0.00 0.00 3.36
2326 3333 6.897966 TCTCCTATGATCAAAACCTACAGAGT 59.102 38.462 0.00 0.00 0.00 3.24
2327 3334 7.069331 AGTCTCCTATGATCAAAACCTACAGAG 59.931 40.741 0.00 0.00 0.00 3.35
2328 3335 6.897966 AGTCTCCTATGATCAAAACCTACAGA 59.102 38.462 0.00 0.00 0.00 3.41
2329 3336 6.983307 CAGTCTCCTATGATCAAAACCTACAG 59.017 42.308 0.00 0.00 0.00 2.74
2330 3337 6.630413 GCAGTCTCCTATGATCAAAACCTACA 60.630 42.308 0.00 0.00 0.00 2.74
2331 3338 5.755861 GCAGTCTCCTATGATCAAAACCTAC 59.244 44.000 0.00 0.00 0.00 3.18
2332 3339 5.425217 TGCAGTCTCCTATGATCAAAACCTA 59.575 40.000 0.00 0.00 0.00 3.08
2333 3340 4.225942 TGCAGTCTCCTATGATCAAAACCT 59.774 41.667 0.00 0.00 0.00 3.50
2334 3341 4.517285 TGCAGTCTCCTATGATCAAAACC 58.483 43.478 0.00 0.00 0.00 3.27
2335 3342 6.500684 TTTGCAGTCTCCTATGATCAAAAC 57.499 37.500 0.00 0.00 0.00 2.43
2336 3343 6.885918 TCATTTGCAGTCTCCTATGATCAAAA 59.114 34.615 0.00 0.00 0.00 2.44
2337 3344 6.417258 TCATTTGCAGTCTCCTATGATCAAA 58.583 36.000 0.00 0.00 0.00 2.69
2338 3345 5.993055 TCATTTGCAGTCTCCTATGATCAA 58.007 37.500 0.00 0.00 0.00 2.57
2339 3346 5.619132 TCATTTGCAGTCTCCTATGATCA 57.381 39.130 0.00 0.00 0.00 2.92
2340 3347 5.049543 GCTTCATTTGCAGTCTCCTATGATC 60.050 44.000 0.00 0.00 0.00 2.92
2341 3348 4.820716 GCTTCATTTGCAGTCTCCTATGAT 59.179 41.667 0.00 0.00 0.00 2.45
2342 3349 4.080695 AGCTTCATTTGCAGTCTCCTATGA 60.081 41.667 0.00 0.00 0.00 2.15
2343 3350 4.197750 AGCTTCATTTGCAGTCTCCTATG 58.802 43.478 0.00 0.00 0.00 2.23
2344 3351 4.500499 AGCTTCATTTGCAGTCTCCTAT 57.500 40.909 0.00 0.00 0.00 2.57
2345 3352 3.988976 AGCTTCATTTGCAGTCTCCTA 57.011 42.857 0.00 0.00 0.00 2.94
2346 3353 2.818432 CAAGCTTCATTTGCAGTCTCCT 59.182 45.455 0.00 0.00 0.00 3.69
2347 3354 2.094854 CCAAGCTTCATTTGCAGTCTCC 60.095 50.000 0.00 0.00 0.00 3.71
2348 3355 2.816087 TCCAAGCTTCATTTGCAGTCTC 59.184 45.455 0.00 0.00 0.00 3.36
2349 3356 2.867624 TCCAAGCTTCATTTGCAGTCT 58.132 42.857 0.00 0.00 0.00 3.24
2350 3357 3.508762 CATCCAAGCTTCATTTGCAGTC 58.491 45.455 0.00 0.00 0.00 3.51
2351 3358 2.232941 CCATCCAAGCTTCATTTGCAGT 59.767 45.455 0.00 0.00 0.00 4.40
2352 3359 2.232941 ACCATCCAAGCTTCATTTGCAG 59.767 45.455 0.00 0.00 0.00 4.41
2353 3360 2.250031 ACCATCCAAGCTTCATTTGCA 58.750 42.857 0.00 0.00 0.00 4.08
2354 3361 3.256558 GAACCATCCAAGCTTCATTTGC 58.743 45.455 0.00 0.00 0.00 3.68
2355 3362 4.524316 TGAACCATCCAAGCTTCATTTG 57.476 40.909 0.00 0.00 0.00 2.32
2356 3363 5.012354 ACAATGAACCATCCAAGCTTCATTT 59.988 36.000 0.00 0.00 39.99 2.32
2357 3364 4.529377 ACAATGAACCATCCAAGCTTCATT 59.471 37.500 0.00 0.00 41.76 2.57
2358 3365 4.091549 ACAATGAACCATCCAAGCTTCAT 58.908 39.130 0.00 0.00 35.34 2.57
2359 3366 3.499338 ACAATGAACCATCCAAGCTTCA 58.501 40.909 0.00 0.00 0.00 3.02
2360 3367 4.096984 CCTACAATGAACCATCCAAGCTTC 59.903 45.833 0.00 0.00 0.00 3.86
2361 3368 4.019174 CCTACAATGAACCATCCAAGCTT 58.981 43.478 0.00 0.00 0.00 3.74
2362 3369 3.010584 ACCTACAATGAACCATCCAAGCT 59.989 43.478 0.00 0.00 0.00 3.74
2363 3370 3.356290 ACCTACAATGAACCATCCAAGC 58.644 45.455 0.00 0.00 0.00 4.01
2364 3371 4.588899 TGACCTACAATGAACCATCCAAG 58.411 43.478 0.00 0.00 0.00 3.61
2365 3372 4.588899 CTGACCTACAATGAACCATCCAA 58.411 43.478 0.00 0.00 0.00 3.53
2366 3373 3.622206 GCTGACCTACAATGAACCATCCA 60.622 47.826 0.00 0.00 0.00 3.41
2367 3374 2.945668 GCTGACCTACAATGAACCATCC 59.054 50.000 0.00 0.00 0.00 3.51
2368 3375 2.945668 GGCTGACCTACAATGAACCATC 59.054 50.000 0.00 0.00 0.00 3.51
2369 3376 2.308570 TGGCTGACCTACAATGAACCAT 59.691 45.455 0.00 0.00 36.63 3.55
2370 3377 1.702401 TGGCTGACCTACAATGAACCA 59.298 47.619 0.00 0.00 36.63 3.67
2371 3378 2.084546 GTGGCTGACCTACAATGAACC 58.915 52.381 0.00 0.00 36.63 3.62
2372 3379 2.778299 TGTGGCTGACCTACAATGAAC 58.222 47.619 0.00 0.00 36.63 3.18
2373 3380 3.500448 TTGTGGCTGACCTACAATGAA 57.500 42.857 0.00 0.00 34.27 2.57
2374 3381 3.411446 CTTTGTGGCTGACCTACAATGA 58.589 45.455 0.00 0.00 37.05 2.57
2375 3382 2.095059 GCTTTGTGGCTGACCTACAATG 60.095 50.000 0.00 0.00 37.05 2.82
2376 3383 2.162681 GCTTTGTGGCTGACCTACAAT 58.837 47.619 0.00 0.00 37.05 2.71
2377 3384 1.133945 TGCTTTGTGGCTGACCTACAA 60.134 47.619 0.00 0.00 36.09 2.41
2378 3385 0.472044 TGCTTTGTGGCTGACCTACA 59.528 50.000 0.00 0.00 36.63 2.74
2379 3386 1.160137 CTGCTTTGTGGCTGACCTAC 58.840 55.000 0.00 0.00 36.63 3.18
2380 3387 0.764890 ACTGCTTTGTGGCTGACCTA 59.235 50.000 0.00 0.00 36.63 3.08
2381 3388 0.820891 CACTGCTTTGTGGCTGACCT 60.821 55.000 0.00 0.00 36.63 3.85
2382 3389 1.656441 CACTGCTTTGTGGCTGACC 59.344 57.895 0.00 0.00 35.59 4.02
2383 3390 1.008079 GCACTGCTTTGTGGCTGAC 60.008 57.895 0.00 0.00 38.31 3.51
2384 3391 1.036481 TTGCACTGCTTTGTGGCTGA 61.036 50.000 1.98 0.00 38.31 4.26
2385 3392 0.596600 CTTGCACTGCTTTGTGGCTG 60.597 55.000 1.98 0.00 38.31 4.85
2386 3393 1.737816 CTTGCACTGCTTTGTGGCT 59.262 52.632 1.98 0.00 38.31 4.75
2387 3394 1.300388 CCTTGCACTGCTTTGTGGC 60.300 57.895 1.98 0.00 38.31 5.01
2388 3395 1.364901 CCCTTGCACTGCTTTGTGG 59.635 57.895 1.98 0.00 38.31 4.17
2389 3396 1.364901 CCCCTTGCACTGCTTTGTG 59.635 57.895 1.98 0.00 40.62 3.33
2390 3397 2.501602 GCCCCTTGCACTGCTTTGT 61.502 57.895 1.98 0.00 40.77 2.83
2391 3398 2.341176 GCCCCTTGCACTGCTTTG 59.659 61.111 1.98 0.00 40.77 2.77
2400 3407 0.815615 CGATAGGAGTTGCCCCTTGC 60.816 60.000 0.00 0.00 41.77 4.01
2401 3408 0.815615 GCGATAGGAGTTGCCCCTTG 60.816 60.000 0.00 0.00 37.37 3.61
2402 3409 0.983378 AGCGATAGGAGTTGCCCCTT 60.983 55.000 0.00 0.00 37.37 3.95
2403 3410 0.105658 TAGCGATAGGAGTTGCCCCT 60.106 55.000 0.00 0.00 37.37 4.79
2404 3411 0.977395 ATAGCGATAGGAGTTGCCCC 59.023 55.000 0.00 0.00 37.37 5.80
2405 3412 3.512033 CTATAGCGATAGGAGTTGCCC 57.488 52.381 5.97 0.00 37.37 5.36
2414 3421 1.568504 TTGGGGCCCTATAGCGATAG 58.431 55.000 25.93 6.85 35.67 2.08
2415 3422 2.032965 TTTGGGGCCCTATAGCGATA 57.967 50.000 25.93 0.00 0.00 2.92
2416 3423 1.145571 TTTTGGGGCCCTATAGCGAT 58.854 50.000 25.93 0.00 0.00 4.58
2417 3424 0.920438 TTTTTGGGGCCCTATAGCGA 59.080 50.000 25.93 0.23 0.00 4.93
2418 3425 1.613437 CATTTTTGGGGCCCTATAGCG 59.387 52.381 25.93 4.56 0.00 4.26
2419 3426 2.957474 TCATTTTTGGGGCCCTATAGC 58.043 47.619 25.93 4.58 0.00 2.97
2420 3427 4.482990 ACATCATTTTTGGGGCCCTATAG 58.517 43.478 25.93 8.99 0.00 1.31
2421 3428 4.551215 ACATCATTTTTGGGGCCCTATA 57.449 40.909 25.93 8.28 0.00 1.31
2422 3429 3.419732 ACATCATTTTTGGGGCCCTAT 57.580 42.857 25.93 9.12 0.00 2.57
2423 3430 2.938428 ACATCATTTTTGGGGCCCTA 57.062 45.000 25.93 14.71 0.00 3.53
2424 3431 2.225496 TGTACATCATTTTTGGGGCCCT 60.225 45.455 25.93 0.00 0.00 5.19
2425 3432 2.183679 TGTACATCATTTTTGGGGCCC 58.816 47.619 18.17 18.17 0.00 5.80
2426 3433 3.513515 TCTTGTACATCATTTTTGGGGCC 59.486 43.478 0.00 0.00 0.00 5.80
2427 3434 4.747810 CTCTTGTACATCATTTTTGGGGC 58.252 43.478 0.00 0.00 0.00 5.80
2428 3435 4.220382 TGCTCTTGTACATCATTTTTGGGG 59.780 41.667 0.00 0.00 0.00 4.96
2429 3436 5.389859 TGCTCTTGTACATCATTTTTGGG 57.610 39.130 0.00 0.00 0.00 4.12
2430 3437 8.407832 TCATATGCTCTTGTACATCATTTTTGG 58.592 33.333 0.00 0.00 0.00 3.28
2431 3438 9.447040 CTCATATGCTCTTGTACATCATTTTTG 57.553 33.333 0.00 0.00 0.00 2.44
2432 3439 9.399797 TCTCATATGCTCTTGTACATCATTTTT 57.600 29.630 0.00 0.00 0.00 1.94
2433 3440 8.969260 TCTCATATGCTCTTGTACATCATTTT 57.031 30.769 0.00 0.00 0.00 1.82
2434 3441 8.969260 TTCTCATATGCTCTTGTACATCATTT 57.031 30.769 0.00 0.00 0.00 2.32
2435 3442 9.570468 AATTCTCATATGCTCTTGTACATCATT 57.430 29.630 0.00 0.00 0.00 2.57
2436 3443 9.000486 CAATTCTCATATGCTCTTGTACATCAT 58.000 33.333 0.00 1.34 0.00 2.45
2437 3444 8.206189 TCAATTCTCATATGCTCTTGTACATCA 58.794 33.333 0.00 0.00 0.00 3.07
2438 3445 8.599055 TCAATTCTCATATGCTCTTGTACATC 57.401 34.615 0.00 0.00 0.00 3.06
2439 3446 8.427276 TCTCAATTCTCATATGCTCTTGTACAT 58.573 33.333 0.00 0.00 0.00 2.29
2440 3447 7.785033 TCTCAATTCTCATATGCTCTTGTACA 58.215 34.615 0.00 0.00 0.00 2.90
2441 3448 7.384660 CCTCTCAATTCTCATATGCTCTTGTAC 59.615 40.741 0.00 0.00 0.00 2.90
2442 3449 7.288621 TCCTCTCAATTCTCATATGCTCTTGTA 59.711 37.037 0.00 0.00 0.00 2.41
2443 3450 6.099413 TCCTCTCAATTCTCATATGCTCTTGT 59.901 38.462 0.00 0.00 0.00 3.16
2444 3451 6.522946 TCCTCTCAATTCTCATATGCTCTTG 58.477 40.000 0.00 0.00 0.00 3.02
2445 3452 6.744175 TCCTCTCAATTCTCATATGCTCTT 57.256 37.500 0.00 0.00 0.00 2.85
2446 3453 6.744175 TTCCTCTCAATTCTCATATGCTCT 57.256 37.500 0.00 0.00 0.00 4.09
2447 3454 6.073112 GCTTTCCTCTCAATTCTCATATGCTC 60.073 42.308 0.00 0.00 0.00 4.26
2448 3455 5.764192 GCTTTCCTCTCAATTCTCATATGCT 59.236 40.000 0.00 0.00 0.00 3.79
2449 3456 5.764192 AGCTTTCCTCTCAATTCTCATATGC 59.236 40.000 0.00 0.00 0.00 3.14
2450 3457 6.427547 GGAGCTTTCCTCTCAATTCTCATATG 59.572 42.308 0.00 0.00 40.57 1.78
2451 3458 6.465607 GGGAGCTTTCCTCTCAATTCTCATAT 60.466 42.308 0.00 0.00 40.99 1.78
2452 3459 5.163258 GGGAGCTTTCCTCTCAATTCTCATA 60.163 44.000 0.00 0.00 40.99 2.15
2453 3460 4.385088 GGGAGCTTTCCTCTCAATTCTCAT 60.385 45.833 0.00 0.00 40.99 2.90
2454 3461 3.054802 GGGAGCTTTCCTCTCAATTCTCA 60.055 47.826 0.00 0.00 40.99 3.27
2455 3462 3.540617 GGGAGCTTTCCTCTCAATTCTC 58.459 50.000 0.00 0.00 40.99 2.87
2456 3463 2.240921 GGGGAGCTTTCCTCTCAATTCT 59.759 50.000 6.95 0.00 43.27 2.40
2457 3464 2.025887 TGGGGAGCTTTCCTCTCAATTC 60.026 50.000 7.63 0.00 43.27 2.17
2458 3465 1.995542 TGGGGAGCTTTCCTCTCAATT 59.004 47.619 7.63 0.00 43.27 2.32
2459 3466 1.673767 TGGGGAGCTTTCCTCTCAAT 58.326 50.000 7.63 0.00 43.27 2.57
2460 3467 1.444933 TTGGGGAGCTTTCCTCTCAA 58.555 50.000 7.63 1.88 43.27 3.02
2461 3468 1.673767 ATTGGGGAGCTTTCCTCTCA 58.326 50.000 7.63 0.00 43.27 3.27
2462 3469 5.770685 ATATATTGGGGAGCTTTCCTCTC 57.229 43.478 7.63 0.00 40.56 3.20
2463 3470 6.575411 TCTATATATTGGGGAGCTTTCCTCT 58.425 40.000 7.63 0.00 40.57 3.69
2464 3471 6.875972 TCTATATATTGGGGAGCTTTCCTC 57.124 41.667 7.63 0.00 39.98 3.71
2465 3472 7.025620 TCTTCTATATATTGGGGAGCTTTCCT 58.974 38.462 7.63 0.00 0.00 3.36
2466 3473 7.259088 TCTTCTATATATTGGGGAGCTTTCC 57.741 40.000 0.00 0.00 0.00 3.13


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.