Multiple sequence alignment - TraesCS6A01G173200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G173200 chr6A 100.000 2354 0 0 1 2354 185231421 185233774 0.000000e+00 4348.0
1 TraesCS6A01G173200 chr6D 94.662 1124 36 10 706 1822 140640889 140641995 0.000000e+00 1722.0
2 TraesCS6A01G173200 chr6D 94.004 517 26 2 1838 2354 140642962 140643473 0.000000e+00 778.0
3 TraesCS6A01G173200 chr6D 87.209 258 25 3 6 263 140364565 140364814 1.060000e-73 287.0
4 TraesCS6A01G173200 chr6D 89.697 165 12 3 441 600 140485816 140485980 3.070000e-49 206.0
5 TraesCS6A01G173200 chr6D 100.000 44 0 0 657 700 140640811 140640854 5.390000e-12 82.4
6 TraesCS6A01G173200 chr6B 89.517 1202 58 30 672 1835 240384265 240385436 0.000000e+00 1459.0
7 TraesCS6A01G173200 chr6B 95.560 518 18 1 1837 2354 240385600 240386112 0.000000e+00 824.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G173200 chr6A 185231421 185233774 2353 False 4348.0 4348 100.0000 1 2354 1 chr6A.!!$F1 2353
1 TraesCS6A01G173200 chr6D 140640811 140643473 2662 False 860.8 1722 96.2220 657 2354 3 chr6D.!!$F3 1697
2 TraesCS6A01G173200 chr6B 240384265 240386112 1847 False 1141.5 1459 92.5385 672 2354 2 chr6B.!!$F1 1682

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
566 567 0.040336 GACGACTCTGTGAACAGCGA 60.04 55.0 13.49 0.0 43.46 4.93 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2313 3339 0.107066 ATCAATCGCCATGCCAGACA 60.107 50.0 0.0 0.0 0.0 3.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 3.019564 GTCATCCCTTGAAGATTGGTGG 58.980 50.000 0.00 0.00 35.70 4.61
22 23 2.918934 TCATCCCTTGAAGATTGGTGGA 59.081 45.455 0.00 0.00 0.00 4.02
23 24 3.333381 TCATCCCTTGAAGATTGGTGGAA 59.667 43.478 0.00 0.00 0.00 3.53
24 25 3.154827 TCCCTTGAAGATTGGTGGAAC 57.845 47.619 0.00 0.00 0.00 3.62
25 26 2.716424 TCCCTTGAAGATTGGTGGAACT 59.284 45.455 0.00 0.00 36.74 3.01
26 27 3.084786 CCCTTGAAGATTGGTGGAACTC 58.915 50.000 0.00 0.00 36.74 3.01
27 28 2.744202 CCTTGAAGATTGGTGGAACTCG 59.256 50.000 0.00 0.00 36.74 4.18
28 29 3.557054 CCTTGAAGATTGGTGGAACTCGA 60.557 47.826 0.00 0.00 36.74 4.04
29 30 3.762407 TGAAGATTGGTGGAACTCGAA 57.238 42.857 0.00 0.00 36.74 3.71
30 31 3.399330 TGAAGATTGGTGGAACTCGAAC 58.601 45.455 0.00 0.00 36.74 3.95
31 32 3.181459 TGAAGATTGGTGGAACTCGAACA 60.181 43.478 0.00 0.00 36.74 3.18
32 33 3.703001 AGATTGGTGGAACTCGAACAT 57.297 42.857 0.00 0.00 36.74 2.71
33 34 4.021102 AGATTGGTGGAACTCGAACATT 57.979 40.909 0.00 0.00 36.74 2.71
34 35 3.753272 AGATTGGTGGAACTCGAACATTG 59.247 43.478 0.00 0.00 36.74 2.82
35 36 1.234821 TGGTGGAACTCGAACATTGC 58.765 50.000 0.00 0.00 36.74 3.56
36 37 1.202758 TGGTGGAACTCGAACATTGCT 60.203 47.619 0.00 0.00 36.74 3.91
37 38 1.464997 GGTGGAACTCGAACATTGCTC 59.535 52.381 0.00 0.00 36.74 4.26
38 39 2.143122 GTGGAACTCGAACATTGCTCA 58.857 47.619 0.00 0.00 0.00 4.26
39 40 2.096218 GTGGAACTCGAACATTGCTCAC 60.096 50.000 0.00 0.00 0.00 3.51
40 41 1.464997 GGAACTCGAACATTGCTCACC 59.535 52.381 0.00 0.00 0.00 4.02
41 42 2.417719 GAACTCGAACATTGCTCACCT 58.582 47.619 0.00 0.00 0.00 4.00
42 43 2.550830 ACTCGAACATTGCTCACCTT 57.449 45.000 0.00 0.00 0.00 3.50
43 44 2.146342 ACTCGAACATTGCTCACCTTG 58.854 47.619 0.00 0.00 0.00 3.61
44 45 2.224281 ACTCGAACATTGCTCACCTTGA 60.224 45.455 0.00 0.00 0.00 3.02
45 46 3.005554 CTCGAACATTGCTCACCTTGAT 58.994 45.455 0.00 0.00 0.00 2.57
46 47 3.411446 TCGAACATTGCTCACCTTGATT 58.589 40.909 0.00 0.00 0.00 2.57
47 48 3.820467 TCGAACATTGCTCACCTTGATTT 59.180 39.130 0.00 0.00 0.00 2.17
48 49 3.916172 CGAACATTGCTCACCTTGATTTG 59.084 43.478 0.00 0.00 0.00 2.32
49 50 3.308438 ACATTGCTCACCTTGATTTGC 57.692 42.857 0.00 0.00 0.00 3.68
50 51 2.256174 CATTGCTCACCTTGATTTGCG 58.744 47.619 0.00 0.00 0.00 4.85
51 52 1.603456 TTGCTCACCTTGATTTGCGA 58.397 45.000 0.00 0.00 0.00 5.10
52 53 1.603456 TGCTCACCTTGATTTGCGAA 58.397 45.000 0.00 0.00 0.00 4.70
53 54 1.536766 TGCTCACCTTGATTTGCGAAG 59.463 47.619 0.00 0.00 0.00 3.79
54 55 1.135575 GCTCACCTTGATTTGCGAAGG 60.136 52.381 0.00 0.00 43.90 3.46
55 56 2.426522 CTCACCTTGATTTGCGAAGGA 58.573 47.619 5.41 0.00 41.26 3.36
56 57 2.417933 CTCACCTTGATTTGCGAAGGAG 59.582 50.000 5.41 0.00 41.26 3.69
57 58 2.038426 TCACCTTGATTTGCGAAGGAGA 59.962 45.455 5.41 0.50 41.26 3.71
58 59 2.813754 CACCTTGATTTGCGAAGGAGAA 59.186 45.455 5.41 0.00 41.26 2.87
59 60 3.441572 CACCTTGATTTGCGAAGGAGAAT 59.558 43.478 5.41 0.00 41.26 2.40
60 61 4.082125 ACCTTGATTTGCGAAGGAGAATT 58.918 39.130 5.41 0.00 41.26 2.17
61 62 4.524328 ACCTTGATTTGCGAAGGAGAATTT 59.476 37.500 5.41 0.00 41.26 1.82
62 63 5.011023 ACCTTGATTTGCGAAGGAGAATTTT 59.989 36.000 5.41 0.00 41.26 1.82
63 64 5.574443 CCTTGATTTGCGAAGGAGAATTTTC 59.426 40.000 0.00 0.00 41.26 2.29
64 65 5.059404 TGATTTGCGAAGGAGAATTTTCC 57.941 39.130 6.93 6.93 37.52 3.13
65 66 4.522405 TGATTTGCGAAGGAGAATTTTCCA 59.478 37.500 16.81 0.00 39.84 3.53
66 67 4.503741 TTTGCGAAGGAGAATTTTCCAG 57.496 40.909 16.81 8.82 39.84 3.86
67 68 1.812571 TGCGAAGGAGAATTTTCCAGC 59.187 47.619 16.81 17.13 39.84 4.85
68 69 1.812571 GCGAAGGAGAATTTTCCAGCA 59.187 47.619 16.81 0.00 39.84 4.41
69 70 2.228822 GCGAAGGAGAATTTTCCAGCAA 59.771 45.455 16.81 0.00 39.84 3.91
70 71 3.671702 GCGAAGGAGAATTTTCCAGCAAG 60.672 47.826 16.81 5.06 39.84 4.01
71 72 3.119708 CGAAGGAGAATTTTCCAGCAAGG 60.120 47.826 16.81 0.00 39.84 3.61
72 73 3.532641 AGGAGAATTTTCCAGCAAGGT 57.467 42.857 16.81 0.00 39.84 3.50
73 74 3.160269 AGGAGAATTTTCCAGCAAGGTG 58.840 45.455 16.81 0.00 39.84 4.00
74 75 2.232208 GGAGAATTTTCCAGCAAGGTGG 59.768 50.000 11.94 11.94 39.02 4.61
75 76 1.620323 AGAATTTTCCAGCAAGGTGGC 59.380 47.619 13.25 0.00 37.53 5.01
76 77 0.686789 AATTTTCCAGCAAGGTGGCC 59.313 50.000 13.25 0.00 37.53 5.36
77 78 0.471591 ATTTTCCAGCAAGGTGGCCA 60.472 50.000 13.25 0.00 37.53 5.36
78 79 0.689080 TTTTCCAGCAAGGTGGCCAA 60.689 50.000 7.24 6.11 37.53 4.52
79 80 0.689080 TTTCCAGCAAGGTGGCCAAA 60.689 50.000 7.24 7.16 37.53 3.28
80 81 0.471591 TTCCAGCAAGGTGGCCAAAT 60.472 50.000 7.24 0.00 37.53 2.32
81 82 0.471591 TCCAGCAAGGTGGCCAAATT 60.472 50.000 7.24 1.45 37.53 1.82
82 83 0.320946 CCAGCAAGGTGGCCAAATTG 60.321 55.000 21.50 21.50 0.00 2.32
83 84 0.393820 CAGCAAGGTGGCCAAATTGT 59.606 50.000 24.61 13.47 0.00 2.71
84 85 0.681175 AGCAAGGTGGCCAAATTGTC 59.319 50.000 24.61 18.60 0.00 3.18
85 86 0.392336 GCAAGGTGGCCAAATTGTCA 59.608 50.000 24.61 0.00 0.00 3.58
86 87 1.002315 GCAAGGTGGCCAAATTGTCAT 59.998 47.619 24.61 1.94 0.00 3.06
87 88 2.690786 CAAGGTGGCCAAATTGTCATG 58.309 47.619 7.24 0.00 0.00 3.07
88 89 2.014010 AGGTGGCCAAATTGTCATGT 57.986 45.000 7.24 0.00 0.00 3.21
89 90 3.168035 AGGTGGCCAAATTGTCATGTA 57.832 42.857 7.24 0.00 0.00 2.29
90 91 3.711863 AGGTGGCCAAATTGTCATGTAT 58.288 40.909 7.24 0.00 0.00 2.29
91 92 4.865905 AGGTGGCCAAATTGTCATGTATA 58.134 39.130 7.24 0.00 0.00 1.47
92 93 5.457686 AGGTGGCCAAATTGTCATGTATAT 58.542 37.500 7.24 0.00 0.00 0.86
93 94 5.898972 AGGTGGCCAAATTGTCATGTATATT 59.101 36.000 7.24 0.00 0.00 1.28
94 95 6.040842 AGGTGGCCAAATTGTCATGTATATTC 59.959 38.462 7.24 0.00 0.00 1.75
95 96 6.040842 GGTGGCCAAATTGTCATGTATATTCT 59.959 38.462 7.24 0.00 0.00 2.40
96 97 7.417797 GGTGGCCAAATTGTCATGTATATTCTT 60.418 37.037 7.24 0.00 0.00 2.52
97 98 7.981225 GTGGCCAAATTGTCATGTATATTCTTT 59.019 33.333 7.24 0.00 0.00 2.52
98 99 7.980662 TGGCCAAATTGTCATGTATATTCTTTG 59.019 33.333 0.61 0.00 0.00 2.77
99 100 8.196771 GGCCAAATTGTCATGTATATTCTTTGA 58.803 33.333 0.00 0.00 0.00 2.69
100 101 9.585099 GCCAAATTGTCATGTATATTCTTTGAA 57.415 29.630 0.00 0.00 0.00 2.69
116 117 6.182039 TCTTTGAAATGTATGAAAGGAGCG 57.818 37.500 0.00 0.00 0.00 5.03
117 118 5.937540 TCTTTGAAATGTATGAAAGGAGCGA 59.062 36.000 0.00 0.00 0.00 4.93
118 119 6.429692 TCTTTGAAATGTATGAAAGGAGCGAA 59.570 34.615 0.00 0.00 0.00 4.70
119 120 6.567687 TTGAAATGTATGAAAGGAGCGAAA 57.432 33.333 0.00 0.00 0.00 3.46
120 121 6.757897 TGAAATGTATGAAAGGAGCGAAAT 57.242 33.333 0.00 0.00 0.00 2.17
121 122 6.554419 TGAAATGTATGAAAGGAGCGAAATG 58.446 36.000 0.00 0.00 0.00 2.32
122 123 6.374053 TGAAATGTATGAAAGGAGCGAAATGA 59.626 34.615 0.00 0.00 0.00 2.57
123 124 5.741388 ATGTATGAAAGGAGCGAAATGAC 57.259 39.130 0.00 0.00 0.00 3.06
124 125 3.938963 TGTATGAAAGGAGCGAAATGACC 59.061 43.478 0.00 0.00 0.00 4.02
125 126 2.559698 TGAAAGGAGCGAAATGACCA 57.440 45.000 0.00 0.00 0.00 4.02
126 127 2.151202 TGAAAGGAGCGAAATGACCAC 58.849 47.619 0.00 0.00 0.00 4.16
127 128 1.128692 GAAAGGAGCGAAATGACCACG 59.871 52.381 0.00 0.00 0.00 4.94
131 132 3.263941 GCGAAATGACCACGCCTT 58.736 55.556 0.00 0.00 45.35 4.35
132 133 1.579429 GCGAAATGACCACGCCTTT 59.421 52.632 0.00 0.00 45.35 3.11
133 134 0.800012 GCGAAATGACCACGCCTTTA 59.200 50.000 0.00 0.00 45.35 1.85
134 135 1.202031 GCGAAATGACCACGCCTTTAG 60.202 52.381 0.00 0.00 45.35 1.85
135 136 1.202031 CGAAATGACCACGCCTTTAGC 60.202 52.381 0.00 0.00 38.52 3.09
136 137 2.084546 GAAATGACCACGCCTTTAGCT 58.915 47.619 0.00 0.00 40.39 3.32
137 138 2.200373 AATGACCACGCCTTTAGCTT 57.800 45.000 0.00 0.00 40.39 3.74
138 139 2.200373 ATGACCACGCCTTTAGCTTT 57.800 45.000 0.00 0.00 40.39 3.51
139 140 2.843401 TGACCACGCCTTTAGCTTTA 57.157 45.000 0.00 0.00 40.39 1.85
140 141 2.695359 TGACCACGCCTTTAGCTTTAG 58.305 47.619 0.00 0.00 40.39 1.85
141 142 2.300723 TGACCACGCCTTTAGCTTTAGA 59.699 45.455 0.00 0.00 40.39 2.10
142 143 3.244284 TGACCACGCCTTTAGCTTTAGAA 60.244 43.478 0.00 0.00 40.39 2.10
143 144 3.746940 ACCACGCCTTTAGCTTTAGAAA 58.253 40.909 0.00 0.00 40.39 2.52
144 145 3.751698 ACCACGCCTTTAGCTTTAGAAAG 59.248 43.478 0.00 0.00 40.39 2.62
152 153 2.388310 AGCTTTAGAAAGGACGAGGC 57.612 50.000 4.27 0.00 36.53 4.70
153 154 1.903183 AGCTTTAGAAAGGACGAGGCT 59.097 47.619 4.27 0.00 36.53 4.58
154 155 2.303311 AGCTTTAGAAAGGACGAGGCTT 59.697 45.455 4.27 0.00 36.53 4.35
155 156 2.416893 GCTTTAGAAAGGACGAGGCTTG 59.583 50.000 0.00 0.00 36.53 4.01
156 157 2.094762 TTAGAAAGGACGAGGCTTGC 57.905 50.000 0.37 0.00 0.00 4.01
157 158 0.973632 TAGAAAGGACGAGGCTTGCA 59.026 50.000 0.37 0.00 0.00 4.08
158 159 0.603975 AGAAAGGACGAGGCTTGCAC 60.604 55.000 0.37 0.00 0.00 4.57
159 160 1.901650 GAAAGGACGAGGCTTGCACG 61.902 60.000 0.37 0.00 0.00 5.34
162 163 3.482783 GACGAGGCTTGCACGCTC 61.483 66.667 15.41 9.42 0.00 5.03
163 164 3.923563 GACGAGGCTTGCACGCTCT 62.924 63.158 15.41 10.25 0.00 4.09
164 165 3.184683 CGAGGCTTGCACGCTCTC 61.185 66.667 15.41 16.90 0.00 3.20
165 166 2.264166 GAGGCTTGCACGCTCTCT 59.736 61.111 15.41 3.56 0.00 3.10
166 167 1.809209 GAGGCTTGCACGCTCTCTC 60.809 63.158 15.41 9.40 0.00 3.20
167 168 2.817396 GGCTTGCACGCTCTCTCC 60.817 66.667 15.41 0.00 0.00 3.71
168 169 3.184683 GCTTGCACGCTCTCTCCG 61.185 66.667 8.12 0.00 0.00 4.63
169 170 3.184683 CTTGCACGCTCTCTCCGC 61.185 66.667 0.00 0.00 0.00 5.54
175 176 4.785512 CGCTCTCTCCGCGTGCTT 62.786 66.667 4.92 0.00 45.13 3.91
176 177 2.883253 GCTCTCTCCGCGTGCTTC 60.883 66.667 4.92 0.00 0.00 3.86
177 178 2.578178 CTCTCTCCGCGTGCTTCG 60.578 66.667 4.92 0.00 43.12 3.79
178 179 3.329688 CTCTCTCCGCGTGCTTCGT 62.330 63.158 4.92 0.00 42.13 3.85
179 180 2.430921 CTCTCCGCGTGCTTCGTT 60.431 61.111 4.92 0.00 42.13 3.85
180 181 2.430244 TCTCCGCGTGCTTCGTTC 60.430 61.111 4.92 0.00 42.13 3.95
181 182 3.479269 CTCCGCGTGCTTCGTTCC 61.479 66.667 4.92 0.00 42.13 3.62
184 185 4.409588 CGCGTGCTTCGTTCCGTG 62.410 66.667 0.00 0.00 42.13 4.94
185 186 4.719616 GCGTGCTTCGTTCCGTGC 62.720 66.667 4.16 0.00 42.13 5.34
186 187 3.036084 CGTGCTTCGTTCCGTGCT 61.036 61.111 0.00 0.00 34.52 4.40
187 188 2.853914 GTGCTTCGTTCCGTGCTC 59.146 61.111 0.00 0.00 0.00 4.26
188 189 1.954146 GTGCTTCGTTCCGTGCTCA 60.954 57.895 0.00 0.00 0.00 4.26
189 190 1.227409 TGCTTCGTTCCGTGCTCAA 60.227 52.632 0.00 0.00 0.00 3.02
190 191 0.812014 TGCTTCGTTCCGTGCTCAAA 60.812 50.000 0.00 0.00 0.00 2.69
191 192 0.517316 GCTTCGTTCCGTGCTCAAAT 59.483 50.000 0.00 0.00 0.00 2.32
192 193 1.730064 GCTTCGTTCCGTGCTCAAATA 59.270 47.619 0.00 0.00 0.00 1.40
193 194 2.351726 GCTTCGTTCCGTGCTCAAATAT 59.648 45.455 0.00 0.00 0.00 1.28
194 195 3.554324 GCTTCGTTCCGTGCTCAAATATA 59.446 43.478 0.00 0.00 0.00 0.86
195 196 4.211374 GCTTCGTTCCGTGCTCAAATATAT 59.789 41.667 0.00 0.00 0.00 0.86
196 197 5.651172 TTCGTTCCGTGCTCAAATATATG 57.349 39.130 0.00 0.00 0.00 1.78
197 198 4.689071 TCGTTCCGTGCTCAAATATATGT 58.311 39.130 0.00 0.00 0.00 2.29
198 199 5.834169 TCGTTCCGTGCTCAAATATATGTA 58.166 37.500 0.00 0.00 0.00 2.29
199 200 6.452242 TCGTTCCGTGCTCAAATATATGTAT 58.548 36.000 0.00 0.00 0.00 2.29
200 201 6.584942 TCGTTCCGTGCTCAAATATATGTATC 59.415 38.462 0.00 0.00 0.00 2.24
201 202 6.586463 CGTTCCGTGCTCAAATATATGTATCT 59.414 38.462 0.00 0.00 0.00 1.98
202 203 7.753580 CGTTCCGTGCTCAAATATATGTATCTA 59.246 37.037 0.00 0.00 0.00 1.98
203 204 9.077674 GTTCCGTGCTCAAATATATGTATCTAG 57.922 37.037 0.00 0.00 0.00 2.43
204 205 7.258441 TCCGTGCTCAAATATATGTATCTAGC 58.742 38.462 0.00 0.00 0.00 3.42
205 206 7.035612 CCGTGCTCAAATATATGTATCTAGCA 58.964 38.462 8.38 8.38 35.26 3.49
271 272 8.877864 ATGAGATGAAGGGAGTACTATAAGAG 57.122 38.462 0.00 0.00 0.00 2.85
272 273 7.817440 TGAGATGAAGGGAGTACTATAAGAGT 58.183 38.462 0.00 0.00 42.69 3.24
273 274 7.721842 TGAGATGAAGGGAGTACTATAAGAGTG 59.278 40.741 0.00 0.00 39.39 3.51
274 275 7.588169 AGATGAAGGGAGTACTATAAGAGTGT 58.412 38.462 0.00 0.00 39.39 3.55
275 276 8.725256 AGATGAAGGGAGTACTATAAGAGTGTA 58.275 37.037 0.00 0.00 39.39 2.90
276 277 8.927675 ATGAAGGGAGTACTATAAGAGTGTAG 57.072 38.462 0.00 0.00 39.39 2.74
277 278 6.771749 TGAAGGGAGTACTATAAGAGTGTAGC 59.228 42.308 0.00 0.00 39.39 3.58
278 279 6.263412 AGGGAGTACTATAAGAGTGTAGCA 57.737 41.667 0.00 0.00 39.39 3.49
279 280 6.670617 AGGGAGTACTATAAGAGTGTAGCAA 58.329 40.000 0.00 0.00 39.39 3.91
280 281 6.773685 AGGGAGTACTATAAGAGTGTAGCAAG 59.226 42.308 0.00 0.00 39.39 4.01
281 282 6.771749 GGGAGTACTATAAGAGTGTAGCAAGA 59.228 42.308 0.00 0.00 39.39 3.02
282 283 7.255208 GGGAGTACTATAAGAGTGTAGCAAGAC 60.255 44.444 0.00 0.00 39.39 3.01
283 284 7.282675 GGAGTACTATAAGAGTGTAGCAAGACA 59.717 40.741 0.00 0.00 39.39 3.41
352 353 8.729805 AAGAGCTTTTAGATCATTAACAGAGG 57.270 34.615 0.00 0.00 31.99 3.69
353 354 7.278875 AGAGCTTTTAGATCATTAACAGAGGG 58.721 38.462 0.00 0.00 31.99 4.30
354 355 6.360618 AGCTTTTAGATCATTAACAGAGGGG 58.639 40.000 0.00 0.00 0.00 4.79
355 356 6.069381 AGCTTTTAGATCATTAACAGAGGGGT 60.069 38.462 0.00 0.00 0.00 4.95
356 357 7.127339 AGCTTTTAGATCATTAACAGAGGGGTA 59.873 37.037 0.00 0.00 0.00 3.69
357 358 7.939588 GCTTTTAGATCATTAACAGAGGGGTAT 59.060 37.037 0.00 0.00 0.00 2.73
358 359 9.853177 CTTTTAGATCATTAACAGAGGGGTATT 57.147 33.333 0.00 0.00 0.00 1.89
381 382 8.927675 ATTTATAATAGTTAATCCAACGGCCA 57.072 30.769 2.24 0.00 42.35 5.36
382 383 7.972832 TTATAATAGTTAATCCAACGGCCAG 57.027 36.000 2.24 0.00 42.35 4.85
383 384 4.497291 AATAGTTAATCCAACGGCCAGA 57.503 40.909 2.24 0.00 42.35 3.86
384 385 2.403252 AGTTAATCCAACGGCCAGAG 57.597 50.000 2.24 0.00 42.35 3.35
385 386 0.733150 GTTAATCCAACGGCCAGAGC 59.267 55.000 2.24 0.00 38.76 4.09
386 387 0.326595 TTAATCCAACGGCCAGAGCA 59.673 50.000 2.24 0.00 42.56 4.26
387 388 0.326595 TAATCCAACGGCCAGAGCAA 59.673 50.000 2.24 0.00 42.56 3.91
388 389 0.323725 AATCCAACGGCCAGAGCAAT 60.324 50.000 2.24 0.00 42.56 3.56
389 390 0.749454 ATCCAACGGCCAGAGCAATC 60.749 55.000 2.24 0.00 42.56 2.67
390 391 1.377725 CCAACGGCCAGAGCAATCT 60.378 57.895 2.24 0.00 42.56 2.40
391 392 1.372087 CCAACGGCCAGAGCAATCTC 61.372 60.000 2.24 0.00 42.56 2.75
392 393 1.078143 AACGGCCAGAGCAATCTCC 60.078 57.895 2.24 0.00 42.56 3.71
393 394 1.557269 AACGGCCAGAGCAATCTCCT 61.557 55.000 2.24 0.00 42.56 3.69
394 395 1.227497 CGGCCAGAGCAATCTCCTC 60.227 63.158 2.24 0.00 42.56 3.71
395 396 1.148048 GGCCAGAGCAATCTCCTCC 59.852 63.158 0.00 0.00 42.56 4.30
396 397 1.148048 GCCAGAGCAATCTCCTCCC 59.852 63.158 0.00 0.00 40.22 4.30
397 398 1.835693 CCAGAGCAATCTCCTCCCC 59.164 63.158 0.00 0.00 40.22 4.81
398 399 1.704007 CCAGAGCAATCTCCTCCCCC 61.704 65.000 0.00 0.00 40.22 5.40
399 400 0.984961 CAGAGCAATCTCCTCCCCCA 60.985 60.000 0.00 0.00 40.22 4.96
400 401 0.985490 AGAGCAATCTCCTCCCCCAC 60.985 60.000 0.00 0.00 40.22 4.61
401 402 2.190578 GCAATCTCCTCCCCCACG 59.809 66.667 0.00 0.00 0.00 4.94
402 403 2.670148 GCAATCTCCTCCCCCACGT 61.670 63.158 0.00 0.00 0.00 4.49
403 404 1.991230 CAATCTCCTCCCCCACGTT 59.009 57.895 0.00 0.00 0.00 3.99
404 405 0.107654 CAATCTCCTCCCCCACGTTC 60.108 60.000 0.00 0.00 0.00 3.95
405 406 1.272554 AATCTCCTCCCCCACGTTCC 61.273 60.000 0.00 0.00 0.00 3.62
406 407 2.182858 ATCTCCTCCCCCACGTTCCT 62.183 60.000 0.00 0.00 0.00 3.36
407 408 1.918800 CTCCTCCCCCACGTTCCTT 60.919 63.158 0.00 0.00 0.00 3.36
408 409 1.462627 TCCTCCCCCACGTTCCTTT 60.463 57.895 0.00 0.00 0.00 3.11
409 410 1.063654 TCCTCCCCCACGTTCCTTTT 61.064 55.000 0.00 0.00 0.00 2.27
410 411 0.178973 CCTCCCCCACGTTCCTTTTT 60.179 55.000 0.00 0.00 0.00 1.94
411 412 1.244816 CTCCCCCACGTTCCTTTTTC 58.755 55.000 0.00 0.00 0.00 2.29
412 413 0.551879 TCCCCCACGTTCCTTTTTCA 59.448 50.000 0.00 0.00 0.00 2.69
413 414 0.958822 CCCCCACGTTCCTTTTTCAG 59.041 55.000 0.00 0.00 0.00 3.02
414 415 0.313987 CCCCACGTTCCTTTTTCAGC 59.686 55.000 0.00 0.00 0.00 4.26
415 416 0.313987 CCCACGTTCCTTTTTCAGCC 59.686 55.000 0.00 0.00 0.00 4.85
416 417 1.028905 CCACGTTCCTTTTTCAGCCA 58.971 50.000 0.00 0.00 0.00 4.75
417 418 1.407258 CCACGTTCCTTTTTCAGCCAA 59.593 47.619 0.00 0.00 0.00 4.52
418 419 2.159170 CCACGTTCCTTTTTCAGCCAAA 60.159 45.455 0.00 0.00 0.00 3.28
419 420 3.115554 CACGTTCCTTTTTCAGCCAAAG 58.884 45.455 0.00 0.00 0.00 2.77
420 421 2.758423 ACGTTCCTTTTTCAGCCAAAGT 59.242 40.909 0.00 0.00 30.40 2.66
421 422 3.949113 ACGTTCCTTTTTCAGCCAAAGTA 59.051 39.130 0.00 0.00 30.40 2.24
422 423 4.201980 ACGTTCCTTTTTCAGCCAAAGTAC 60.202 41.667 0.00 0.00 30.40 2.73
423 424 4.036380 CGTTCCTTTTTCAGCCAAAGTACT 59.964 41.667 0.00 0.00 30.40 2.73
424 425 5.520632 GTTCCTTTTTCAGCCAAAGTACTC 58.479 41.667 0.00 0.00 30.40 2.59
425 426 5.048846 TCCTTTTTCAGCCAAAGTACTCT 57.951 39.130 0.00 0.00 30.40 3.24
426 427 6.182507 TCCTTTTTCAGCCAAAGTACTCTA 57.817 37.500 0.00 0.00 30.40 2.43
427 428 6.597562 TCCTTTTTCAGCCAAAGTACTCTAA 58.402 36.000 0.00 0.00 30.40 2.10
428 429 7.057894 TCCTTTTTCAGCCAAAGTACTCTAAA 58.942 34.615 0.00 0.00 30.40 1.85
429 430 7.558444 TCCTTTTTCAGCCAAAGTACTCTAAAA 59.442 33.333 0.00 0.00 30.40 1.52
430 431 8.360390 CCTTTTTCAGCCAAAGTACTCTAAAAT 58.640 33.333 0.00 0.00 30.40 1.82
457 458 6.481954 AAAAATCCTGTATTGTCGTCTGTC 57.518 37.500 0.00 0.00 0.00 3.51
458 459 4.801330 AATCCTGTATTGTCGTCTGTCA 57.199 40.909 0.00 0.00 0.00 3.58
459 460 5.344743 AATCCTGTATTGTCGTCTGTCAT 57.655 39.130 0.00 0.00 0.00 3.06
460 461 4.371855 TCCTGTATTGTCGTCTGTCATC 57.628 45.455 0.00 0.00 0.00 2.92
461 462 3.130516 TCCTGTATTGTCGTCTGTCATCC 59.869 47.826 0.00 0.00 0.00 3.51
462 463 3.448686 CTGTATTGTCGTCTGTCATCCC 58.551 50.000 0.00 0.00 0.00 3.85
463 464 2.167693 TGTATTGTCGTCTGTCATCCCC 59.832 50.000 0.00 0.00 0.00 4.81
464 465 0.175760 ATTGTCGTCTGTCATCCCCG 59.824 55.000 0.00 0.00 0.00 5.73
465 466 0.896479 TTGTCGTCTGTCATCCCCGA 60.896 55.000 0.00 0.00 0.00 5.14
466 467 0.683179 TGTCGTCTGTCATCCCCGAT 60.683 55.000 0.00 0.00 0.00 4.18
467 468 0.249073 GTCGTCTGTCATCCCCGATG 60.249 60.000 0.00 0.00 41.00 3.84
468 469 0.395173 TCGTCTGTCATCCCCGATGA 60.395 55.000 0.16 0.16 45.35 2.92
488 489 6.927294 ATGAACCATCGTATTTTCTTCTCC 57.073 37.500 0.00 0.00 0.00 3.71
489 490 5.183228 TGAACCATCGTATTTTCTTCTCCC 58.817 41.667 0.00 0.00 0.00 4.30
490 491 4.152284 ACCATCGTATTTTCTTCTCCCC 57.848 45.455 0.00 0.00 0.00 4.81
491 492 3.131396 CCATCGTATTTTCTTCTCCCCG 58.869 50.000 0.00 0.00 0.00 5.73
492 493 2.304751 TCGTATTTTCTTCTCCCCGC 57.695 50.000 0.00 0.00 0.00 6.13
493 494 0.928229 CGTATTTTCTTCTCCCCGCG 59.072 55.000 0.00 0.00 0.00 6.46
494 495 1.296727 GTATTTTCTTCTCCCCGCGG 58.703 55.000 21.04 21.04 0.00 6.46
495 496 1.134610 GTATTTTCTTCTCCCCGCGGA 60.135 52.381 30.73 6.52 36.45 5.54
510 511 3.217743 GGAGGGGAGCCGTACGAG 61.218 72.222 18.76 8.15 0.00 4.18
511 512 3.902086 GAGGGGAGCCGTACGAGC 61.902 72.222 18.76 18.02 0.00 5.03
514 515 4.208686 GGGAGCCGTACGAGCCTG 62.209 72.222 18.76 0.00 0.00 4.85
515 516 4.874977 GGAGCCGTACGAGCCTGC 62.875 72.222 18.76 11.24 0.00 4.85
518 519 4.789075 GCCGTACGAGCCTGCGAA 62.789 66.667 18.76 0.00 34.83 4.70
519 520 2.126228 CCGTACGAGCCTGCGAAA 60.126 61.111 18.76 0.00 34.83 3.46
520 521 1.518572 CCGTACGAGCCTGCGAAAT 60.519 57.895 18.76 0.00 34.83 2.17
521 522 0.248743 CCGTACGAGCCTGCGAAATA 60.249 55.000 18.76 0.00 34.83 1.40
522 523 1.552226 CGTACGAGCCTGCGAAATAA 58.448 50.000 10.44 0.00 34.83 1.40
523 524 2.124903 CGTACGAGCCTGCGAAATAAT 58.875 47.619 10.44 0.00 34.83 1.28
524 525 2.153247 CGTACGAGCCTGCGAAATAATC 59.847 50.000 10.44 0.00 34.83 1.75
525 526 1.583054 ACGAGCCTGCGAAATAATCC 58.417 50.000 0.00 0.00 34.83 3.01
526 527 0.508641 CGAGCCTGCGAAATAATCCG 59.491 55.000 0.00 0.00 0.00 4.18
527 528 1.583054 GAGCCTGCGAAATAATCCGT 58.417 50.000 0.00 0.00 0.00 4.69
528 529 1.261619 GAGCCTGCGAAATAATCCGTG 59.738 52.381 0.00 0.00 0.00 4.94
529 530 0.317020 GCCTGCGAAATAATCCGTGC 60.317 55.000 0.00 0.00 0.00 5.34
530 531 1.013596 CCTGCGAAATAATCCGTGCA 58.986 50.000 0.00 0.00 0.00 4.57
531 532 1.400142 CCTGCGAAATAATCCGTGCAA 59.600 47.619 0.00 0.00 31.16 4.08
532 533 2.539547 CCTGCGAAATAATCCGTGCAAG 60.540 50.000 0.00 0.00 31.16 4.01
533 534 1.202132 TGCGAAATAATCCGTGCAAGC 60.202 47.619 0.00 0.00 0.00 4.01
534 535 1.202132 GCGAAATAATCCGTGCAAGCA 60.202 47.619 0.00 0.00 0.00 3.91
535 536 2.440501 CGAAATAATCCGTGCAAGCAC 58.559 47.619 14.90 14.90 43.01 4.40
564 565 1.852942 TTGACGACTCTGTGAACAGC 58.147 50.000 5.55 0.00 43.46 4.40
565 566 0.317854 TGACGACTCTGTGAACAGCG 60.318 55.000 5.55 6.51 43.46 5.18
566 567 0.040336 GACGACTCTGTGAACAGCGA 60.040 55.000 13.49 0.00 43.46 4.93
567 568 0.317938 ACGACTCTGTGAACAGCGAC 60.318 55.000 13.49 4.84 43.46 5.19
568 569 1.330779 CGACTCTGTGAACAGCGACG 61.331 60.000 7.41 8.82 43.46 5.12
569 570 0.317938 GACTCTGTGAACAGCGACGT 60.318 55.000 7.41 0.00 43.46 4.34
570 571 0.595053 ACTCTGTGAACAGCGACGTG 60.595 55.000 7.41 0.00 43.46 4.49
571 572 1.278172 CTCTGTGAACAGCGACGTGG 61.278 60.000 5.55 0.00 43.46 4.94
572 573 2.943345 CTGTGAACAGCGACGTGGC 61.943 63.158 15.38 15.38 37.15 5.01
573 574 2.661866 GTGAACAGCGACGTGGCT 60.662 61.111 20.15 20.15 46.13 4.75
599 600 3.917760 GGGCAGCCTCGCGTAGAT 61.918 66.667 12.43 0.00 0.00 1.98
600 601 2.659897 GGCAGCCTCGCGTAGATG 60.660 66.667 5.77 9.10 0.00 2.90
601 602 3.333969 GCAGCCTCGCGTAGATGC 61.334 66.667 21.25 21.25 40.24 3.91
603 604 2.415010 AGCCTCGCGTAGATGCTG 59.585 61.111 5.77 0.00 46.69 4.41
604 605 2.659897 GCCTCGCGTAGATGCTGG 60.660 66.667 5.77 0.00 37.49 4.85
605 606 3.120105 CCTCGCGTAGATGCTGGA 58.880 61.111 5.77 0.00 0.00 3.86
606 607 1.299468 CCTCGCGTAGATGCTGGAC 60.299 63.158 5.77 0.00 0.00 4.02
607 608 1.299468 CTCGCGTAGATGCTGGACC 60.299 63.158 5.77 0.00 0.00 4.46
608 609 2.279517 CGCGTAGATGCTGGACCC 60.280 66.667 0.00 0.00 0.00 4.46
609 610 2.109181 GCGTAGATGCTGGACCCC 59.891 66.667 0.00 0.00 0.00 4.95
610 611 2.417516 CGTAGATGCTGGACCCCG 59.582 66.667 0.00 0.00 0.00 5.73
611 612 2.822399 GTAGATGCTGGACCCCGG 59.178 66.667 0.00 0.00 0.00 5.73
612 613 1.760875 GTAGATGCTGGACCCCGGA 60.761 63.158 0.73 0.00 29.82 5.14
613 614 1.457643 TAGATGCTGGACCCCGGAG 60.458 63.158 0.73 0.00 29.82 4.63
633 634 4.695560 CGGAGGTGACTTTGACCC 57.304 61.111 0.00 0.00 44.43 4.46
634 635 1.752198 CGGAGGTGACTTTGACCCA 59.248 57.895 0.00 0.00 44.43 4.51
635 636 0.602905 CGGAGGTGACTTTGACCCAC 60.603 60.000 0.00 0.00 44.43 4.61
636 637 0.602905 GGAGGTGACTTTGACCCACG 60.603 60.000 0.00 0.00 44.43 4.94
637 638 1.227853 AGGTGACTTTGACCCACGC 60.228 57.895 0.00 0.00 37.44 5.34
638 639 2.604174 GGTGACTTTGACCCACGCG 61.604 63.158 3.53 3.53 0.00 6.01
639 640 1.593209 GTGACTTTGACCCACGCGA 60.593 57.895 15.93 0.00 0.00 5.87
640 641 1.300620 TGACTTTGACCCACGCGAG 60.301 57.895 15.93 4.16 0.00 5.03
641 642 2.027625 GACTTTGACCCACGCGAGG 61.028 63.158 15.93 16.16 0.00 4.63
642 643 2.342279 CTTTGACCCACGCGAGGA 59.658 61.111 24.92 0.49 0.00 3.71
643 644 2.027625 CTTTGACCCACGCGAGGAC 61.028 63.158 24.92 18.17 0.00 3.85
644 645 3.851845 TTTGACCCACGCGAGGACG 62.852 63.158 24.92 10.71 42.93 4.79
702 703 2.288458 CGAAGACCGATCCAGAGTCTAC 59.712 54.545 0.00 0.00 39.92 2.59
703 704 2.351706 AGACCGATCCAGAGTCTACC 57.648 55.000 0.00 0.00 39.06 3.18
755 789 2.613133 GCATGTTCTTGATCAGCTCCTC 59.387 50.000 0.00 0.00 0.00 3.71
780 814 2.813908 GCTCCCAGCGTAACCGTG 60.814 66.667 0.00 0.00 36.15 4.94
781 815 2.125673 CTCCCAGCGTAACCGTGG 60.126 66.667 0.00 0.00 36.00 4.94
782 816 4.382320 TCCCAGCGTAACCGTGGC 62.382 66.667 0.00 0.00 35.36 5.01
863 897 1.826385 CTAAATCCGGCATCCCATCC 58.174 55.000 0.00 0.00 0.00 3.51
914 948 4.070552 GTCCCGCTCGCCAGACTT 62.071 66.667 0.00 0.00 0.00 3.01
1379 1419 1.977854 TCCAAGCCTGACTTCTAAGCA 59.022 47.619 0.00 0.00 36.04 3.91
1609 1676 0.181587 TGGCCTCGTTTTGGTCTTCA 59.818 50.000 3.32 0.00 0.00 3.02
1614 1681 4.879545 GGCCTCGTTTTGGTCTTCATATTA 59.120 41.667 0.00 0.00 0.00 0.98
1652 1719 2.561478 TGAGCTTGGTCTACAAACCC 57.439 50.000 0.00 0.00 38.91 4.11
1853 2879 9.944376 TCAAAAGTTATGAGCACTTAGACTAAT 57.056 29.630 0.00 0.00 33.12 1.73
1974 3000 7.739022 TTTCAACAATTCATATGACAATCGC 57.261 32.000 4.48 0.00 0.00 4.58
2044 3070 7.284919 TGTATCTCTCACAAAGTCTTGTACA 57.715 36.000 0.00 0.00 44.15 2.90
2047 3073 5.041287 TCTCTCACAAAGTCTTGTACAACG 58.959 41.667 3.59 1.56 44.15 4.10
2144 3170 2.027745 CCTTGCACTCTCTTCCTTGCTA 60.028 50.000 0.00 0.00 35.91 3.49
2223 3249 4.345257 AGATGGCTCCACAGTTACGATTAT 59.655 41.667 0.00 0.00 0.00 1.28
2224 3250 5.538813 AGATGGCTCCACAGTTACGATTATA 59.461 40.000 0.00 0.00 0.00 0.98
2272 3298 3.854856 GTTGCTTCAACTGGCCCA 58.145 55.556 0.00 0.00 40.73 5.36
2309 3335 2.034179 CGCCGGACTGTGATATTGTCTA 59.966 50.000 5.05 0.00 0.00 2.59
2313 3339 5.567623 GCCGGACTGTGATATTGTCTATGAT 60.568 44.000 5.05 0.00 0.00 2.45
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.019564 CCACCAATCTTCAAGGGATGAC 58.980 50.000 0.00 0.00 37.92 3.06
1 2 2.918934 TCCACCAATCTTCAAGGGATGA 59.081 45.455 0.00 0.00 35.85 2.92
2 3 3.370840 TCCACCAATCTTCAAGGGATG 57.629 47.619 0.00 0.00 0.00 3.51
3 4 3.334881 AGTTCCACCAATCTTCAAGGGAT 59.665 43.478 0.00 0.00 0.00 3.85
4 5 2.716424 AGTTCCACCAATCTTCAAGGGA 59.284 45.455 0.00 0.00 0.00 4.20
5 6 3.084786 GAGTTCCACCAATCTTCAAGGG 58.915 50.000 0.00 0.00 0.00 3.95
6 7 2.744202 CGAGTTCCACCAATCTTCAAGG 59.256 50.000 0.00 0.00 0.00 3.61
7 8 3.664107 TCGAGTTCCACCAATCTTCAAG 58.336 45.455 0.00 0.00 0.00 3.02
8 9 3.762407 TCGAGTTCCACCAATCTTCAA 57.238 42.857 0.00 0.00 0.00 2.69
9 10 3.181459 TGTTCGAGTTCCACCAATCTTCA 60.181 43.478 0.00 0.00 0.00 3.02
10 11 3.399330 TGTTCGAGTTCCACCAATCTTC 58.601 45.455 0.00 0.00 0.00 2.87
11 12 3.485463 TGTTCGAGTTCCACCAATCTT 57.515 42.857 0.00 0.00 0.00 2.40
12 13 3.703001 ATGTTCGAGTTCCACCAATCT 57.297 42.857 0.00 0.00 0.00 2.40
13 14 3.670627 GCAATGTTCGAGTTCCACCAATC 60.671 47.826 0.00 0.00 0.00 2.67
14 15 2.228822 GCAATGTTCGAGTTCCACCAAT 59.771 45.455 0.00 0.00 0.00 3.16
15 16 1.606668 GCAATGTTCGAGTTCCACCAA 59.393 47.619 0.00 0.00 0.00 3.67
16 17 1.202758 AGCAATGTTCGAGTTCCACCA 60.203 47.619 0.00 0.00 0.00 4.17
17 18 1.464997 GAGCAATGTTCGAGTTCCACC 59.535 52.381 0.00 0.00 0.00 4.61
18 19 2.096218 GTGAGCAATGTTCGAGTTCCAC 60.096 50.000 0.00 0.00 0.00 4.02
19 20 2.143122 GTGAGCAATGTTCGAGTTCCA 58.857 47.619 0.00 0.00 0.00 3.53
20 21 1.464997 GGTGAGCAATGTTCGAGTTCC 59.535 52.381 0.00 0.00 0.00 3.62
21 22 2.417719 AGGTGAGCAATGTTCGAGTTC 58.582 47.619 0.00 0.00 0.00 3.01
22 23 2.549754 CAAGGTGAGCAATGTTCGAGTT 59.450 45.455 0.00 0.00 0.00 3.01
23 24 2.146342 CAAGGTGAGCAATGTTCGAGT 58.854 47.619 0.00 0.00 0.00 4.18
24 25 2.416747 TCAAGGTGAGCAATGTTCGAG 58.583 47.619 0.00 0.00 0.00 4.04
25 26 2.542020 TCAAGGTGAGCAATGTTCGA 57.458 45.000 0.00 0.00 0.00 3.71
26 27 3.837213 AATCAAGGTGAGCAATGTTCG 57.163 42.857 0.00 0.00 0.00 3.95
27 28 3.676646 GCAAATCAAGGTGAGCAATGTTC 59.323 43.478 0.00 0.00 0.00 3.18
28 29 3.656559 GCAAATCAAGGTGAGCAATGTT 58.343 40.909 0.00 0.00 0.00 2.71
29 30 2.352030 CGCAAATCAAGGTGAGCAATGT 60.352 45.455 0.00 0.00 0.00 2.71
30 31 2.095110 TCGCAAATCAAGGTGAGCAATG 60.095 45.455 0.00 0.00 0.00 2.82
31 32 2.161855 TCGCAAATCAAGGTGAGCAAT 58.838 42.857 0.00 0.00 0.00 3.56
32 33 1.603456 TCGCAAATCAAGGTGAGCAA 58.397 45.000 0.00 0.00 0.00 3.91
33 34 1.536766 CTTCGCAAATCAAGGTGAGCA 59.463 47.619 0.00 0.00 0.00 4.26
34 35 1.135575 CCTTCGCAAATCAAGGTGAGC 60.136 52.381 0.00 0.00 35.34 4.26
35 36 2.417933 CTCCTTCGCAAATCAAGGTGAG 59.582 50.000 0.00 0.00 40.28 3.51
36 37 2.038426 TCTCCTTCGCAAATCAAGGTGA 59.962 45.455 0.00 0.00 40.28 4.02
37 38 2.426522 TCTCCTTCGCAAATCAAGGTG 58.573 47.619 0.00 0.00 40.28 4.00
38 39 2.859165 TCTCCTTCGCAAATCAAGGT 57.141 45.000 0.00 0.00 40.28 3.50
39 40 4.708726 AATTCTCCTTCGCAAATCAAGG 57.291 40.909 0.00 0.00 40.69 3.61
40 41 5.574443 GGAAAATTCTCCTTCGCAAATCAAG 59.426 40.000 0.00 0.00 32.21 3.02
41 42 5.010516 TGGAAAATTCTCCTTCGCAAATCAA 59.989 36.000 0.00 0.00 36.35 2.57
42 43 4.522405 TGGAAAATTCTCCTTCGCAAATCA 59.478 37.500 0.00 0.00 36.35 2.57
43 44 5.059404 TGGAAAATTCTCCTTCGCAAATC 57.941 39.130 0.00 0.00 36.35 2.17
44 45 4.619160 GCTGGAAAATTCTCCTTCGCAAAT 60.619 41.667 0.00 0.00 36.35 2.32
45 46 3.305335 GCTGGAAAATTCTCCTTCGCAAA 60.305 43.478 0.00 0.00 36.35 3.68
46 47 2.228822 GCTGGAAAATTCTCCTTCGCAA 59.771 45.455 0.00 0.00 36.35 4.85
47 48 1.812571 GCTGGAAAATTCTCCTTCGCA 59.187 47.619 0.00 0.00 36.35 5.10
48 49 1.812571 TGCTGGAAAATTCTCCTTCGC 59.187 47.619 0.00 0.41 36.35 4.70
49 50 3.119708 CCTTGCTGGAAAATTCTCCTTCG 60.120 47.826 0.00 0.00 38.35 3.79
50 51 3.829026 ACCTTGCTGGAAAATTCTCCTTC 59.171 43.478 0.00 0.00 39.71 3.46
51 52 3.575687 CACCTTGCTGGAAAATTCTCCTT 59.424 43.478 0.00 0.00 39.71 3.36
52 53 3.160269 CACCTTGCTGGAAAATTCTCCT 58.840 45.455 0.00 0.00 39.71 3.69
53 54 2.232208 CCACCTTGCTGGAAAATTCTCC 59.768 50.000 3.40 0.00 39.71 3.71
54 55 2.353109 GCCACCTTGCTGGAAAATTCTC 60.353 50.000 3.40 0.00 39.71 2.87
55 56 1.620323 GCCACCTTGCTGGAAAATTCT 59.380 47.619 3.40 0.00 39.71 2.40
56 57 1.338105 GGCCACCTTGCTGGAAAATTC 60.338 52.381 0.00 0.00 39.71 2.17
57 58 0.686789 GGCCACCTTGCTGGAAAATT 59.313 50.000 0.00 0.00 39.71 1.82
58 59 0.471591 TGGCCACCTTGCTGGAAAAT 60.472 50.000 0.00 0.00 39.71 1.82
59 60 0.689080 TTGGCCACCTTGCTGGAAAA 60.689 50.000 3.88 0.00 39.71 2.29
60 61 0.689080 TTTGGCCACCTTGCTGGAAA 60.689 50.000 3.88 0.00 39.71 3.13
61 62 0.471591 ATTTGGCCACCTTGCTGGAA 60.472 50.000 3.88 0.00 39.71 3.53
62 63 0.471591 AATTTGGCCACCTTGCTGGA 60.472 50.000 3.88 0.00 39.71 3.86
63 64 0.320946 CAATTTGGCCACCTTGCTGG 60.321 55.000 3.88 0.00 42.93 4.85
64 65 0.393820 ACAATTTGGCCACCTTGCTG 59.606 50.000 21.09 9.73 0.00 4.41
65 66 0.681175 GACAATTTGGCCACCTTGCT 59.319 50.000 21.09 11.68 0.00 3.91
66 67 0.392336 TGACAATTTGGCCACCTTGC 59.608 50.000 21.09 15.58 0.00 4.01
67 68 2.037511 ACATGACAATTTGGCCACCTTG 59.962 45.455 20.03 20.03 0.00 3.61
68 69 2.328319 ACATGACAATTTGGCCACCTT 58.672 42.857 3.88 0.00 0.00 3.50
69 70 2.014010 ACATGACAATTTGGCCACCT 57.986 45.000 3.88 0.00 0.00 4.00
70 71 5.789643 ATATACATGACAATTTGGCCACC 57.210 39.130 3.88 0.00 0.00 4.61
71 72 7.042797 AGAATATACATGACAATTTGGCCAC 57.957 36.000 3.88 0.00 0.00 5.01
72 73 7.658525 AAGAATATACATGACAATTTGGCCA 57.341 32.000 0.00 0.00 0.00 5.36
73 74 8.196771 TCAAAGAATATACATGACAATTTGGCC 58.803 33.333 0.00 0.00 0.00 5.36
74 75 9.585099 TTCAAAGAATATACATGACAATTTGGC 57.415 29.630 0.00 0.00 0.00 4.52
90 91 8.397906 CGCTCCTTTCATACATTTCAAAGAATA 58.602 33.333 0.00 0.00 0.00 1.75
91 92 7.121168 TCGCTCCTTTCATACATTTCAAAGAAT 59.879 33.333 0.00 0.00 0.00 2.40
92 93 6.429692 TCGCTCCTTTCATACATTTCAAAGAA 59.570 34.615 0.00 0.00 0.00 2.52
93 94 5.937540 TCGCTCCTTTCATACATTTCAAAGA 59.062 36.000 0.00 0.00 0.00 2.52
94 95 6.182039 TCGCTCCTTTCATACATTTCAAAG 57.818 37.500 0.00 0.00 0.00 2.77
95 96 6.567687 TTCGCTCCTTTCATACATTTCAAA 57.432 33.333 0.00 0.00 0.00 2.69
96 97 6.567687 TTTCGCTCCTTTCATACATTTCAA 57.432 33.333 0.00 0.00 0.00 2.69
97 98 6.374053 TCATTTCGCTCCTTTCATACATTTCA 59.626 34.615 0.00 0.00 0.00 2.69
98 99 6.688813 GTCATTTCGCTCCTTTCATACATTTC 59.311 38.462 0.00 0.00 0.00 2.17
99 100 6.404734 GGTCATTTCGCTCCTTTCATACATTT 60.405 38.462 0.00 0.00 0.00 2.32
100 101 5.066505 GGTCATTTCGCTCCTTTCATACATT 59.933 40.000 0.00 0.00 0.00 2.71
101 102 4.576463 GGTCATTTCGCTCCTTTCATACAT 59.424 41.667 0.00 0.00 0.00 2.29
102 103 3.938963 GGTCATTTCGCTCCTTTCATACA 59.061 43.478 0.00 0.00 0.00 2.29
103 104 3.938963 TGGTCATTTCGCTCCTTTCATAC 59.061 43.478 0.00 0.00 0.00 2.39
104 105 3.938963 GTGGTCATTTCGCTCCTTTCATA 59.061 43.478 0.00 0.00 0.00 2.15
105 106 2.749621 GTGGTCATTTCGCTCCTTTCAT 59.250 45.455 0.00 0.00 0.00 2.57
106 107 2.151202 GTGGTCATTTCGCTCCTTTCA 58.849 47.619 0.00 0.00 0.00 2.69
107 108 1.128692 CGTGGTCATTTCGCTCCTTTC 59.871 52.381 0.00 0.00 0.00 2.62
108 109 1.156736 CGTGGTCATTTCGCTCCTTT 58.843 50.000 0.00 0.00 0.00 3.11
109 110 1.298859 GCGTGGTCATTTCGCTCCTT 61.299 55.000 0.00 0.00 45.29 3.36
110 111 1.741770 GCGTGGTCATTTCGCTCCT 60.742 57.895 0.00 0.00 45.29 3.69
111 112 2.785258 GCGTGGTCATTTCGCTCC 59.215 61.111 0.00 0.00 45.29 4.70
115 116 1.202031 GCTAAAGGCGTGGTCATTTCG 60.202 52.381 0.00 0.00 0.00 3.46
116 117 2.544480 GCTAAAGGCGTGGTCATTTC 57.456 50.000 0.00 0.00 0.00 2.17
121 122 7.097403 CCTTTCTAAAGCTAAAGGCGTGGTC 62.097 48.000 11.82 0.00 43.79 4.02
122 123 5.340458 CCTTTCTAAAGCTAAAGGCGTGGT 61.340 45.833 11.82 0.00 43.79 4.16
123 124 3.127030 CCTTTCTAAAGCTAAAGGCGTGG 59.873 47.826 11.82 0.00 43.79 4.94
124 125 4.342352 CCTTTCTAAAGCTAAAGGCGTG 57.658 45.455 11.82 0.00 43.79 5.34
129 130 4.330347 GCCTCGTCCTTTCTAAAGCTAAAG 59.670 45.833 0.47 0.47 34.69 1.85
130 131 4.020485 AGCCTCGTCCTTTCTAAAGCTAAA 60.020 41.667 0.00 0.00 34.69 1.85
131 132 3.514309 AGCCTCGTCCTTTCTAAAGCTAA 59.486 43.478 0.00 0.00 34.69 3.09
132 133 3.097614 AGCCTCGTCCTTTCTAAAGCTA 58.902 45.455 0.00 0.00 34.69 3.32
133 134 1.903183 AGCCTCGTCCTTTCTAAAGCT 59.097 47.619 0.00 0.00 34.69 3.74
134 135 2.388310 AGCCTCGTCCTTTCTAAAGC 57.612 50.000 0.00 0.00 34.69 3.51
135 136 2.416893 GCAAGCCTCGTCCTTTCTAAAG 59.583 50.000 0.00 0.00 35.79 1.85
136 137 2.224426 TGCAAGCCTCGTCCTTTCTAAA 60.224 45.455 0.00 0.00 0.00 1.85
137 138 1.346395 TGCAAGCCTCGTCCTTTCTAA 59.654 47.619 0.00 0.00 0.00 2.10
138 139 0.973632 TGCAAGCCTCGTCCTTTCTA 59.026 50.000 0.00 0.00 0.00 2.10
139 140 0.603975 GTGCAAGCCTCGTCCTTTCT 60.604 55.000 0.00 0.00 0.00 2.52
140 141 1.869690 GTGCAAGCCTCGTCCTTTC 59.130 57.895 0.00 0.00 0.00 2.62
141 142 1.961277 CGTGCAAGCCTCGTCCTTT 60.961 57.895 0.00 0.00 0.00 3.11
142 143 2.357517 CGTGCAAGCCTCGTCCTT 60.358 61.111 0.00 0.00 0.00 3.36
145 146 3.482783 GAGCGTGCAAGCCTCGTC 61.483 66.667 21.32 8.39 38.01 4.20
146 147 3.923563 GAGAGCGTGCAAGCCTCGT 62.924 63.158 21.32 1.94 38.01 4.18
147 148 3.184683 GAGAGCGTGCAAGCCTCG 61.185 66.667 21.32 5.03 38.01 4.63
148 149 1.809209 GAGAGAGCGTGCAAGCCTC 60.809 63.158 24.62 24.62 38.01 4.70
149 150 2.264166 GAGAGAGCGTGCAAGCCT 59.736 61.111 21.32 16.97 38.01 4.58
150 151 2.817396 GGAGAGAGCGTGCAAGCC 60.817 66.667 21.32 12.48 38.01 4.35
151 152 3.184683 CGGAGAGAGCGTGCAAGC 61.185 66.667 17.43 17.43 37.41 4.01
152 153 3.184683 GCGGAGAGAGCGTGCAAG 61.185 66.667 0.00 0.00 0.00 4.01
159 160 2.883253 GAAGCACGCGGAGAGAGC 60.883 66.667 12.47 4.36 44.62 4.09
160 161 2.578178 CGAAGCACGCGGAGAGAG 60.578 66.667 12.47 0.00 34.51 3.20
161 162 2.797866 GAACGAAGCACGCGGAGAGA 62.798 60.000 12.47 0.00 46.94 3.10
162 163 2.430921 AACGAAGCACGCGGAGAG 60.431 61.111 12.47 0.00 46.94 3.20
163 164 2.430244 GAACGAAGCACGCGGAGA 60.430 61.111 12.47 0.00 46.94 3.71
164 165 3.479269 GGAACGAAGCACGCGGAG 61.479 66.667 12.47 3.23 46.94 4.63
177 178 7.891183 AGATACATATATTTGAGCACGGAAC 57.109 36.000 0.00 0.00 0.00 3.62
178 179 7.759886 GCTAGATACATATATTTGAGCACGGAA 59.240 37.037 0.00 0.00 0.00 4.30
179 180 7.093945 TGCTAGATACATATATTTGAGCACGGA 60.094 37.037 0.00 0.00 30.85 4.69
180 181 7.009631 GTGCTAGATACATATATTTGAGCACGG 59.990 40.741 15.81 0.35 39.11 4.94
181 182 7.757173 AGTGCTAGATACATATATTTGAGCACG 59.243 37.037 20.66 0.00 45.04 5.34
182 183 8.994429 AGTGCTAGATACATATATTTGAGCAC 57.006 34.615 19.92 19.92 43.25 4.40
202 203 9.765795 GGATGTATCTAAATGTACTTTAGTGCT 57.234 33.333 17.14 10.41 44.49 4.40
203 204 9.542462 TGGATGTATCTAAATGTACTTTAGTGC 57.458 33.333 17.14 11.91 44.49 4.40
245 246 9.967451 CTCTTATAGTACTCCCTTCATCTCATA 57.033 37.037 0.00 0.00 0.00 2.15
246 247 8.452868 ACTCTTATAGTACTCCCTTCATCTCAT 58.547 37.037 0.00 0.00 36.36 2.90
247 248 7.721842 CACTCTTATAGTACTCCCTTCATCTCA 59.278 40.741 0.00 0.00 35.76 3.27
248 249 7.722285 ACACTCTTATAGTACTCCCTTCATCTC 59.278 40.741 0.00 0.00 35.76 2.75
249 250 7.588169 ACACTCTTATAGTACTCCCTTCATCT 58.412 38.462 0.00 0.00 35.76 2.90
250 251 7.826918 ACACTCTTATAGTACTCCCTTCATC 57.173 40.000 0.00 0.00 35.76 2.92
251 252 7.449086 GCTACACTCTTATAGTACTCCCTTCAT 59.551 40.741 0.00 0.00 35.76 2.57
252 253 6.771749 GCTACACTCTTATAGTACTCCCTTCA 59.228 42.308 0.00 0.00 35.76 3.02
253 254 6.771749 TGCTACACTCTTATAGTACTCCCTTC 59.228 42.308 0.00 0.00 35.76 3.46
254 255 6.670617 TGCTACACTCTTATAGTACTCCCTT 58.329 40.000 0.00 0.00 35.76 3.95
255 256 6.263412 TGCTACACTCTTATAGTACTCCCT 57.737 41.667 0.00 0.00 35.76 4.20
256 257 6.771749 TCTTGCTACACTCTTATAGTACTCCC 59.228 42.308 0.00 0.00 35.76 4.30
257 258 7.282675 TGTCTTGCTACACTCTTATAGTACTCC 59.717 40.741 0.00 0.00 35.76 3.85
258 259 8.124199 GTGTCTTGCTACACTCTTATAGTACTC 58.876 40.741 0.00 0.00 45.12 2.59
259 260 7.987649 GTGTCTTGCTACACTCTTATAGTACT 58.012 38.462 0.00 0.00 45.12 2.73
326 327 9.823647 CCTCTGTTAATGATCTAAAAGCTCTTA 57.176 33.333 0.00 0.00 0.00 2.10
327 328 7.772757 CCCTCTGTTAATGATCTAAAAGCTCTT 59.227 37.037 0.00 0.00 0.00 2.85
328 329 7.278875 CCCTCTGTTAATGATCTAAAAGCTCT 58.721 38.462 0.00 0.00 0.00 4.09
329 330 6.484977 CCCCTCTGTTAATGATCTAAAAGCTC 59.515 42.308 0.00 0.00 0.00 4.09
330 331 6.069381 ACCCCTCTGTTAATGATCTAAAAGCT 60.069 38.462 0.00 0.00 0.00 3.74
331 332 6.122964 ACCCCTCTGTTAATGATCTAAAAGC 58.877 40.000 0.00 0.00 0.00 3.51
332 333 9.853177 AATACCCCTCTGTTAATGATCTAAAAG 57.147 33.333 0.00 0.00 0.00 2.27
356 357 8.927675 TGGCCGTTGGATTAACTATTATAAAT 57.072 30.769 0.00 0.00 37.13 1.40
357 358 8.212312 TCTGGCCGTTGGATTAACTATTATAAA 58.788 33.333 0.00 0.00 37.13 1.40
358 359 7.737869 TCTGGCCGTTGGATTAACTATTATAA 58.262 34.615 0.00 0.00 37.13 0.98
359 360 7.305813 TCTGGCCGTTGGATTAACTATTATA 57.694 36.000 0.00 0.00 37.13 0.98
360 361 6.182507 TCTGGCCGTTGGATTAACTATTAT 57.817 37.500 0.00 0.00 37.13 1.28
361 362 5.607477 CTCTGGCCGTTGGATTAACTATTA 58.393 41.667 0.00 0.00 37.13 0.98
362 363 4.451900 CTCTGGCCGTTGGATTAACTATT 58.548 43.478 0.00 0.00 37.13 1.73
363 364 3.744530 GCTCTGGCCGTTGGATTAACTAT 60.745 47.826 0.00 0.00 37.13 2.12
364 365 2.419574 GCTCTGGCCGTTGGATTAACTA 60.420 50.000 0.00 0.00 37.13 2.24
365 366 1.679032 GCTCTGGCCGTTGGATTAACT 60.679 52.381 0.00 0.00 37.13 2.24
366 367 0.733150 GCTCTGGCCGTTGGATTAAC 59.267 55.000 0.00 0.00 35.90 2.01
367 368 0.326595 TGCTCTGGCCGTTGGATTAA 59.673 50.000 0.00 0.00 37.74 1.40
368 369 0.326595 TTGCTCTGGCCGTTGGATTA 59.673 50.000 0.00 0.00 37.74 1.75
369 370 0.323725 ATTGCTCTGGCCGTTGGATT 60.324 50.000 0.00 0.00 37.74 3.01
370 371 0.749454 GATTGCTCTGGCCGTTGGAT 60.749 55.000 0.00 0.00 37.74 3.41
371 372 1.377202 GATTGCTCTGGCCGTTGGA 60.377 57.895 0.00 0.00 37.74 3.53
372 373 1.372087 GAGATTGCTCTGGCCGTTGG 61.372 60.000 0.00 0.00 38.16 3.77
373 374 1.372087 GGAGATTGCTCTGGCCGTTG 61.372 60.000 0.00 0.00 41.06 4.10
374 375 1.078143 GGAGATTGCTCTGGCCGTT 60.078 57.895 0.00 0.00 41.06 4.44
375 376 1.965754 GAGGAGATTGCTCTGGCCGT 61.966 60.000 0.00 0.00 41.06 5.68
376 377 1.227497 GAGGAGATTGCTCTGGCCG 60.227 63.158 0.00 0.00 41.06 6.13
377 378 1.148048 GGAGGAGATTGCTCTGGCC 59.852 63.158 0.00 0.00 41.06 5.36
378 379 1.148048 GGGAGGAGATTGCTCTGGC 59.852 63.158 0.00 0.00 41.06 4.85
379 380 1.704007 GGGGGAGGAGATTGCTCTGG 61.704 65.000 0.00 0.00 41.06 3.86
380 381 0.984961 TGGGGGAGGAGATTGCTCTG 60.985 60.000 0.00 0.00 41.06 3.35
381 382 0.985490 GTGGGGGAGGAGATTGCTCT 60.985 60.000 0.00 0.00 41.06 4.09
382 383 1.529309 GTGGGGGAGGAGATTGCTC 59.471 63.158 0.00 0.00 40.54 4.26
383 384 2.370445 CGTGGGGGAGGAGATTGCT 61.370 63.158 0.00 0.00 0.00 3.91
384 385 2.190578 CGTGGGGGAGGAGATTGC 59.809 66.667 0.00 0.00 0.00 3.56
385 386 0.107654 GAACGTGGGGGAGGAGATTG 60.108 60.000 0.00 0.00 0.00 2.67
386 387 1.272554 GGAACGTGGGGGAGGAGATT 61.273 60.000 0.00 0.00 0.00 2.40
387 388 1.689582 GGAACGTGGGGGAGGAGAT 60.690 63.158 0.00 0.00 0.00 2.75
388 389 2.284405 GGAACGTGGGGGAGGAGA 60.284 66.667 0.00 0.00 0.00 3.71
389 390 1.489560 AAAGGAACGTGGGGGAGGAG 61.490 60.000 0.00 0.00 0.00 3.69
390 391 1.063654 AAAAGGAACGTGGGGGAGGA 61.064 55.000 0.00 0.00 0.00 3.71
391 392 0.178973 AAAAAGGAACGTGGGGGAGG 60.179 55.000 0.00 0.00 0.00 4.30
392 393 1.244816 GAAAAAGGAACGTGGGGGAG 58.755 55.000 0.00 0.00 0.00 4.30
393 394 0.551879 TGAAAAAGGAACGTGGGGGA 59.448 50.000 0.00 0.00 0.00 4.81
394 395 0.958822 CTGAAAAAGGAACGTGGGGG 59.041 55.000 0.00 0.00 0.00 5.40
395 396 0.313987 GCTGAAAAAGGAACGTGGGG 59.686 55.000 0.00 0.00 0.00 4.96
396 397 0.313987 GGCTGAAAAAGGAACGTGGG 59.686 55.000 0.00 0.00 0.00 4.61
397 398 1.028905 TGGCTGAAAAAGGAACGTGG 58.971 50.000 0.00 0.00 0.00 4.94
398 399 2.861462 TTGGCTGAAAAAGGAACGTG 57.139 45.000 0.00 0.00 0.00 4.49
399 400 2.758423 ACTTTGGCTGAAAAAGGAACGT 59.242 40.909 7.22 0.00 38.66 3.99
400 401 3.436700 ACTTTGGCTGAAAAAGGAACG 57.563 42.857 7.22 0.00 38.66 3.95
401 402 5.299531 AGAGTACTTTGGCTGAAAAAGGAAC 59.700 40.000 0.00 5.42 38.66 3.62
402 403 5.445964 AGAGTACTTTGGCTGAAAAAGGAA 58.554 37.500 0.00 0.00 38.66 3.36
403 404 5.048846 AGAGTACTTTGGCTGAAAAAGGA 57.951 39.130 0.00 0.00 38.66 3.36
404 405 6.877611 TTAGAGTACTTTGGCTGAAAAAGG 57.122 37.500 0.00 0.00 38.66 3.11
434 435 5.995282 TGACAGACGACAATACAGGATTTTT 59.005 36.000 0.00 0.00 0.00 1.94
435 436 5.547465 TGACAGACGACAATACAGGATTTT 58.453 37.500 0.00 0.00 0.00 1.82
436 437 5.147330 TGACAGACGACAATACAGGATTT 57.853 39.130 0.00 0.00 0.00 2.17
437 438 4.801330 TGACAGACGACAATACAGGATT 57.199 40.909 0.00 0.00 0.00 3.01
438 439 4.202161 GGATGACAGACGACAATACAGGAT 60.202 45.833 0.00 0.00 0.00 3.24
439 440 3.130516 GGATGACAGACGACAATACAGGA 59.869 47.826 0.00 0.00 0.00 3.86
440 441 3.448686 GGATGACAGACGACAATACAGG 58.551 50.000 0.00 0.00 0.00 4.00
441 442 3.448686 GGGATGACAGACGACAATACAG 58.551 50.000 0.00 0.00 0.00 2.74
442 443 2.167693 GGGGATGACAGACGACAATACA 59.832 50.000 0.00 0.00 0.00 2.29
443 444 2.798499 CGGGGATGACAGACGACAATAC 60.798 54.545 0.00 0.00 0.00 1.89
444 445 1.407618 CGGGGATGACAGACGACAATA 59.592 52.381 0.00 0.00 0.00 1.90
445 446 0.175760 CGGGGATGACAGACGACAAT 59.824 55.000 0.00 0.00 0.00 2.71
446 447 0.896479 TCGGGGATGACAGACGACAA 60.896 55.000 0.00 0.00 0.00 3.18
447 448 0.683179 ATCGGGGATGACAGACGACA 60.683 55.000 0.00 0.00 36.32 4.35
448 449 0.249073 CATCGGGGATGACAGACGAC 60.249 60.000 0.00 0.00 42.09 4.34
449 450 0.395173 TCATCGGGGATGACAGACGA 60.395 55.000 4.27 0.00 43.11 4.20
450 451 0.459899 TTCATCGGGGATGACAGACG 59.540 55.000 7.76 0.00 46.87 4.18
451 452 1.473434 GGTTCATCGGGGATGACAGAC 60.473 57.143 7.76 4.50 46.87 3.51
452 453 0.830648 GGTTCATCGGGGATGACAGA 59.169 55.000 7.76 0.00 46.87 3.41
453 454 0.541392 TGGTTCATCGGGGATGACAG 59.459 55.000 7.76 0.00 46.87 3.51
454 455 1.140852 GATGGTTCATCGGGGATGACA 59.859 52.381 7.76 4.89 46.87 3.58
455 456 1.884235 GATGGTTCATCGGGGATGAC 58.116 55.000 7.76 4.32 46.87 3.06
464 465 6.017852 GGGAGAAGAAAATACGATGGTTCATC 60.018 42.308 0.00 0.00 37.50 2.92
465 466 5.823045 GGGAGAAGAAAATACGATGGTTCAT 59.177 40.000 0.00 0.00 0.00 2.57
466 467 5.183228 GGGAGAAGAAAATACGATGGTTCA 58.817 41.667 0.00 0.00 0.00 3.18
467 468 4.575236 GGGGAGAAGAAAATACGATGGTTC 59.425 45.833 0.00 0.00 0.00 3.62
468 469 4.524053 GGGGAGAAGAAAATACGATGGTT 58.476 43.478 0.00 0.00 0.00 3.67
469 470 3.431766 CGGGGAGAAGAAAATACGATGGT 60.432 47.826 0.00 0.00 0.00 3.55
470 471 3.131396 CGGGGAGAAGAAAATACGATGG 58.869 50.000 0.00 0.00 0.00 3.51
471 472 2.544267 GCGGGGAGAAGAAAATACGATG 59.456 50.000 0.00 0.00 0.00 3.84
472 473 2.802057 CGCGGGGAGAAGAAAATACGAT 60.802 50.000 0.00 0.00 0.00 3.73
473 474 1.470285 CGCGGGGAGAAGAAAATACGA 60.470 52.381 0.00 0.00 0.00 3.43
474 475 0.928229 CGCGGGGAGAAGAAAATACG 59.072 55.000 0.00 0.00 0.00 3.06
475 476 1.134610 TCCGCGGGGAGAAGAAAATAC 60.135 52.381 27.83 0.00 37.43 1.89
476 477 1.196911 TCCGCGGGGAGAAGAAAATA 58.803 50.000 27.83 0.00 37.43 1.40
477 478 1.988015 TCCGCGGGGAGAAGAAAAT 59.012 52.632 27.83 0.00 37.43 1.82
478 479 3.474000 TCCGCGGGGAGAAGAAAA 58.526 55.556 27.83 0.00 37.43 2.29
493 494 3.217743 CTCGTACGGCTCCCCTCC 61.218 72.222 16.52 0.00 0.00 4.30
494 495 3.902086 GCTCGTACGGCTCCCCTC 61.902 72.222 16.52 0.00 0.00 4.30
497 498 4.208686 CAGGCTCGTACGGCTCCC 62.209 72.222 22.19 14.54 37.76 4.30
498 499 4.874977 GCAGGCTCGTACGGCTCC 62.875 72.222 22.19 17.05 37.76 4.70
501 502 4.789075 TTCGCAGGCTCGTACGGC 62.789 66.667 16.52 16.88 0.00 5.68
502 503 0.248743 TATTTCGCAGGCTCGTACGG 60.249 55.000 16.52 7.41 0.00 4.02
503 504 1.552226 TTATTTCGCAGGCTCGTACG 58.448 50.000 9.53 9.53 0.00 3.67
504 505 2.475487 GGATTATTTCGCAGGCTCGTAC 59.525 50.000 6.32 0.00 0.00 3.67
505 506 2.750948 GGATTATTTCGCAGGCTCGTA 58.249 47.619 6.32 0.00 0.00 3.43
506 507 1.583054 GGATTATTTCGCAGGCTCGT 58.417 50.000 6.32 0.00 0.00 4.18
507 508 0.508641 CGGATTATTTCGCAGGCTCG 59.491 55.000 0.00 0.00 0.00 5.03
508 509 1.261619 CACGGATTATTTCGCAGGCTC 59.738 52.381 0.00 0.00 0.00 4.70
509 510 1.299541 CACGGATTATTTCGCAGGCT 58.700 50.000 0.00 0.00 0.00 4.58
510 511 0.317020 GCACGGATTATTTCGCAGGC 60.317 55.000 0.00 0.00 0.00 4.85
511 512 1.013596 TGCACGGATTATTTCGCAGG 58.986 50.000 0.00 0.00 0.00 4.85
512 513 2.708514 CTTGCACGGATTATTTCGCAG 58.291 47.619 0.00 0.00 0.00 5.18
513 514 1.202132 GCTTGCACGGATTATTTCGCA 60.202 47.619 0.00 0.00 0.00 5.10
514 515 1.202132 TGCTTGCACGGATTATTTCGC 60.202 47.619 0.00 0.00 0.00 4.70
515 516 2.440501 GTGCTTGCACGGATTATTTCG 58.559 47.619 10.06 0.00 0.00 3.46
516 517 2.440501 CGTGCTTGCACGGATTATTTC 58.559 47.619 32.30 1.95 44.01 2.17
517 518 2.542766 CGTGCTTGCACGGATTATTT 57.457 45.000 32.30 0.00 44.01 1.40
540 541 5.425238 CTGTTCACAGAGTCGTCAATACGG 61.425 50.000 0.14 0.00 46.58 4.02
542 543 3.365220 GCTGTTCACAGAGTCGTCAATAC 59.635 47.826 11.29 0.00 46.59 1.89
543 544 3.575630 GCTGTTCACAGAGTCGTCAATA 58.424 45.455 11.29 0.00 46.59 1.90
544 545 2.408050 GCTGTTCACAGAGTCGTCAAT 58.592 47.619 11.29 0.00 46.59 2.57
545 546 1.852942 GCTGTTCACAGAGTCGTCAA 58.147 50.000 11.29 0.00 46.59 3.18
546 547 0.317854 CGCTGTTCACAGAGTCGTCA 60.318 55.000 11.29 0.00 46.59 4.35
547 548 0.040336 TCGCTGTTCACAGAGTCGTC 60.040 55.000 11.29 0.00 46.59 4.20
548 549 0.317938 GTCGCTGTTCACAGAGTCGT 60.318 55.000 11.29 0.00 46.59 4.34
549 550 1.330779 CGTCGCTGTTCACAGAGTCG 61.331 60.000 11.29 12.65 46.59 4.18
550 551 0.317938 ACGTCGCTGTTCACAGAGTC 60.318 55.000 11.29 4.66 46.59 3.36
551 552 0.595053 CACGTCGCTGTTCACAGAGT 60.595 55.000 11.29 2.19 46.59 3.24
552 553 1.278172 CCACGTCGCTGTTCACAGAG 61.278 60.000 11.29 7.74 46.59 3.35
553 554 1.299850 CCACGTCGCTGTTCACAGA 60.300 57.895 11.29 0.00 46.59 3.41
554 555 2.943345 GCCACGTCGCTGTTCACAG 61.943 63.158 0.00 2.31 46.40 3.66
555 556 2.964925 GCCACGTCGCTGTTCACA 60.965 61.111 0.00 0.00 0.00 3.58
556 557 2.661866 AGCCACGTCGCTGTTCAC 60.662 61.111 6.94 0.00 37.82 3.18
582 583 3.917760 ATCTACGCGAGGCTGCCC 61.918 66.667 15.93 6.06 0.00 5.36
583 584 2.659897 CATCTACGCGAGGCTGCC 60.660 66.667 15.93 11.65 0.00 4.85
584 585 3.333969 GCATCTACGCGAGGCTGC 61.334 66.667 15.93 14.27 45.51 5.25
588 589 1.299468 GTCCAGCATCTACGCGAGG 60.299 63.158 15.93 4.70 36.85 4.63
589 590 1.299468 GGTCCAGCATCTACGCGAG 60.299 63.158 15.93 6.12 36.85 5.03
590 591 2.782222 GGGTCCAGCATCTACGCGA 61.782 63.158 15.93 0.00 36.85 5.87
591 592 2.279517 GGGTCCAGCATCTACGCG 60.280 66.667 3.53 3.53 36.85 6.01
592 593 2.109181 GGGGTCCAGCATCTACGC 59.891 66.667 0.00 0.00 0.00 4.42
593 594 2.417516 CGGGGTCCAGCATCTACG 59.582 66.667 0.00 0.00 0.00 3.51
594 595 1.749334 CTCCGGGGTCCAGCATCTAC 61.749 65.000 0.00 0.00 0.00 2.59
595 596 1.457643 CTCCGGGGTCCAGCATCTA 60.458 63.158 0.00 0.00 0.00 1.98
596 597 2.765807 CTCCGGGGTCCAGCATCT 60.766 66.667 0.00 0.00 0.00 2.90
597 598 3.866582 CCTCCGGGGTCCAGCATC 61.867 72.222 0.00 0.00 0.00 3.91
610 611 2.593956 AAAGTCACCTCCGGCCTCC 61.594 63.158 0.00 0.00 0.00 4.30
611 612 1.376037 CAAAGTCACCTCCGGCCTC 60.376 63.158 0.00 0.00 0.00 4.70
612 613 1.841556 TCAAAGTCACCTCCGGCCT 60.842 57.895 0.00 0.00 0.00 5.19
613 614 1.671379 GTCAAAGTCACCTCCGGCC 60.671 63.158 0.00 0.00 0.00 6.13
614 615 1.671379 GGTCAAAGTCACCTCCGGC 60.671 63.158 0.00 0.00 0.00 6.13
615 616 1.003718 GGGTCAAAGTCACCTCCGG 60.004 63.158 0.00 0.00 33.96 5.14
616 617 0.602905 GTGGGTCAAAGTCACCTCCG 60.603 60.000 0.00 0.00 33.96 4.63
617 618 0.602905 CGTGGGTCAAAGTCACCTCC 60.603 60.000 0.00 0.00 33.96 4.30
618 619 1.228657 GCGTGGGTCAAAGTCACCTC 61.229 60.000 0.00 0.00 33.96 3.85
619 620 1.227853 GCGTGGGTCAAAGTCACCT 60.228 57.895 0.00 0.00 33.96 4.00
620 621 2.604174 CGCGTGGGTCAAAGTCACC 61.604 63.158 0.00 0.00 0.00 4.02
621 622 1.557443 CTCGCGTGGGTCAAAGTCAC 61.557 60.000 5.77 0.00 0.00 3.67
622 623 1.300620 CTCGCGTGGGTCAAAGTCA 60.301 57.895 5.77 0.00 0.00 3.41
623 624 2.027625 CCTCGCGTGGGTCAAAGTC 61.028 63.158 19.32 0.00 0.00 3.01
624 625 2.030562 CCTCGCGTGGGTCAAAGT 59.969 61.111 19.32 0.00 0.00 2.66
625 626 2.027625 GTCCTCGCGTGGGTCAAAG 61.028 63.158 25.62 3.72 0.00 2.77
626 627 2.029964 GTCCTCGCGTGGGTCAAA 59.970 61.111 25.62 4.38 0.00 2.69
627 628 4.351938 CGTCCTCGCGTGGGTCAA 62.352 66.667 25.62 4.77 0.00 3.18
642 643 0.810648 TATTTACGTGGACGAGCCGT 59.189 50.000 6.12 0.00 45.10 5.68
643 644 2.129823 ATATTTACGTGGACGAGCCG 57.870 50.000 6.12 0.00 43.02 5.52
644 645 3.714391 AGAATATTTACGTGGACGAGCC 58.286 45.455 6.12 0.00 43.02 4.70
645 646 4.025979 CCAAGAATATTTACGTGGACGAGC 60.026 45.833 6.12 0.00 43.02 5.03
646 647 4.025979 GCCAAGAATATTTACGTGGACGAG 60.026 45.833 6.12 0.00 43.02 4.18
647 648 3.866910 GCCAAGAATATTTACGTGGACGA 59.133 43.478 6.12 0.00 43.02 4.20
648 649 3.302221 CGCCAAGAATATTTACGTGGACG 60.302 47.826 11.64 10.40 46.33 4.79
649 650 3.619929 ACGCCAAGAATATTTACGTGGAC 59.380 43.478 11.64 4.41 37.74 4.02
650 651 3.864243 ACGCCAAGAATATTTACGTGGA 58.136 40.909 11.64 0.00 37.74 4.02
651 652 3.001939 GGACGCCAAGAATATTTACGTGG 59.998 47.826 0.00 5.18 38.35 4.94
652 653 3.869246 AGGACGCCAAGAATATTTACGTG 59.131 43.478 0.00 0.00 31.63 4.49
653 654 4.133013 AGGACGCCAAGAATATTTACGT 57.867 40.909 0.00 0.00 34.58 3.57
654 655 4.150098 GCTAGGACGCCAAGAATATTTACG 59.850 45.833 0.00 0.00 0.00 3.18
655 656 5.054477 TGCTAGGACGCCAAGAATATTTAC 58.946 41.667 0.00 0.00 0.00 2.01
702 703 0.321671 TTCTCTCCAGAAACCTGCGG 59.678 55.000 0.00 0.00 35.57 5.69
703 704 1.001406 AGTTCTCTCCAGAAACCTGCG 59.999 52.381 0.00 0.00 40.49 5.18
715 745 4.244425 TGCAACAGACTACAGTTCTCTC 57.756 45.455 0.00 0.00 0.00 3.20
856 890 0.705253 TTTAAAAGGCGGGGATGGGA 59.295 50.000 0.00 0.00 0.00 4.37
914 948 1.523758 GAGCTTTTCCTTTCCGCTGA 58.476 50.000 0.00 0.00 0.00 4.26
1140 1180 0.179020 TGTCCTTGAGTGGGTTGCAG 60.179 55.000 0.00 0.00 0.00 4.41
1149 1189 0.464036 TGCACGTCTTGTCCTTGAGT 59.536 50.000 0.00 0.00 0.00 3.41
1245 1285 1.895707 GGCGCCAGGAATGGAGATG 60.896 63.158 24.80 0.00 0.00 2.90
1246 1286 2.512896 GGCGCCAGGAATGGAGAT 59.487 61.111 24.80 0.00 0.00 2.75
1379 1419 5.804639 TGCAAGAAGATACTACAACCATGT 58.195 37.500 0.00 0.00 43.74 3.21
1585 1652 0.596082 ACCAAAACGAGGCCAAATCG 59.404 50.000 5.01 8.69 45.54 3.34
1614 1681 6.646267 AGCTCAAACATTATTCAATGCCAAT 58.354 32.000 0.00 0.00 44.62 3.16
1659 1726 3.053896 GGACGTTTTGGCGGAGGG 61.054 66.667 0.00 0.00 35.98 4.30
1824 1894 8.585881 AGTCTAAGTGCTCATAACTTTTGACTA 58.414 33.333 16.08 0.00 42.14 2.59
1825 1895 7.445945 AGTCTAAGTGCTCATAACTTTTGACT 58.554 34.615 13.76 13.76 40.85 3.41
1853 2879 8.150945 AGACTGCTACATCTTTCTACTTTTCAA 58.849 33.333 0.00 0.00 0.00 2.69
1973 2999 6.483307 TGTATACCTTATTCATGCACTTGAGC 59.517 38.462 0.00 0.00 0.00 4.26
1974 3000 7.495606 TGTGTATACCTTATTCATGCACTTGAG 59.504 37.037 0.00 0.00 36.57 3.02
2065 3091 6.542821 TGAAAATACCCACTCAGTGAGAATT 58.457 36.000 26.86 13.44 35.23 2.17
2144 3170 5.449041 GCATGATGTTTACGGTGATGTTCAT 60.449 40.000 0.00 0.00 0.00 2.57
2272 3298 0.523072 GGCGCACTGTCATGAATGTT 59.477 50.000 10.83 0.00 0.00 2.71
2309 3335 0.109913 ATCGCCATGCCAGACATCAT 59.890 50.000 0.00 0.00 36.64 2.45
2313 3339 0.107066 ATCAATCGCCATGCCAGACA 60.107 50.000 0.00 0.00 0.00 3.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.