>input_sequence_82908
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-------------------------------------------------------------------------ATGGCGC
GCGTGTCGC---TGATCCTCGCCGCCGCGGTGCTCGCGTGCGCGGTGCTCGCCACCAGGCATGCGGCCGCCGCCGGGGCC
GGGGCCGCCGCCGCCG---CCGCCGCCGGCCCGGCGGCCCCCGCCCCCGGCGGCTTCGCCTGCAACCCACTCAAGGACAA
GACGTGCAAGCTGGGGGAACCCAAGGCGCCGGAGGACACGGAGGAGGAGGGCGGGCTCGGCACGAAGCTGCCGTCCCTGA
CGTCCATCTCCATTCCTGGCGCCGGCAAGGTCGACCGCGACGGCGATGGAGACACCGACGAGGACGACGAGCTGCCGTCG
TTCGACACCCACATGACCATCCTCGGCCACTGA-----------------------------------------------
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>chr6A_1_TraesCS6A01G173200
GTCATCCCTTGAAGATTGGTGGAACTCGAACATTGCTCACCTTGATTTGCGAAGGAGAATTTTCCAGCAAGGTGGCCAAA
TTGTCATGTATATTCTTTGAAATGTATGAAAGGAGCGAAATGACCACGCCTTTAGCTTTAGAAAGGACGAGGCTTGCACG
CTCTCTCCGCGTGCTTCGTTCCGTGCTCAAATATATGTATCTAGCACTAAAGTACATTTAGATACATCCATTTTGTGATA
ATTAATATGAGATGAAGGGAGTACTATAAGAGTGTAGCAAGACACATTTGATTTATTTATCTGTACTGTTGATTTATAAA
GAAGTATAAGAGCTTTTAGATCATTAACAGAGGGGTATTTATAATAGTTAATCCAACGGCCAGAGCAATCTCCTCCCCCA
CGTTCCTTTTTCAGCCAAAGTACTCTAAAATATAAAAAATCCTGTATTGTCGTCTGTCATCCCCGATGAACCATCGTATT
TTCTTCTCCCCGCGGAGGGGAGCCGTACGAGCCTGCGAAATAATCCGTGCAAGCACGGCCCCGTATTGACGACTCTGTGA
ACAGCGACGTGGCTGGCACAGCGGGCAGCCTCGCGTAGATGCTGGACCCCGGAGGCCGGAGGTGACTTTGACCCACGCGA
GGACGGCTCGTCCACGTAAATATTCTTGGCGTCCTAGCATGCGAAGACCGATCCAGAGTCTACCG---------------
--------------CAGGTTTCTGGAGAGAA----CTGTAGTCTGTTGCATGTTCTTGATCAGCTCCTCAACACCCGCTC
CCAGCGTAACCGTGGCCCGTGGGGACGGTGCCCAGCCACACACGCCGAGCAACGCCCGCAACCGTCGTGACTCCCGGCTA
AATCCGGCATCCCATCCCCGCCTTTTAAAGCGCGCGCCGCCGGGCCTCTCGTCCCGCTCGCCAGACTTCAGCGGAAAGGA
AAAGCTCCTGCACGTACCCCACGTTCGTGCCGCCTCCACACCACCCGCCGTCTACAGCATAACCAGCACGGTCATGGCGC
GCGTGTCGC---TGATCCTCGCCGCCGCGGTGCTCGCGTGCGCGGTGCTCGCCACCAGGCATGCGGCCGCCGCCGGGGCC
GGGGCCGCCGCCGCCG---CCGCCGCCGGCCCGGCGGCCCCCGCCCCCGGCGGCTTCGCCTGCAACCCACTCAAGGACAA
GACGTGCAAGCTGGGGGAACCCAAGGCGCCGGAGGACACGGAGGAGGAGGGCGGGCTCGGCACGAAGCTGCCGTCCCTGA
CGTCCATCTCCATTCCTGGCGCCGGCAAGGTCGACCGCGACGGCGATGGAGACACCGACGAGGACGACGAGCTGCCGTCG
TTCGACACCCACATGACCATCCTCGGCCACTGAGAGGATCCAAGCCTGACTTCTAAGCACATGGTTGTAGTATCTTCTTG
CATTTGCGTTGCTTGTGTAGTTGTGTTGCTGCCCAGAAGAAAGAAACAGAAAAAAGGA----------------------
-----AAAAAGGAAAGAGATGAGAGAGTGAGCGTGTCACGATGATCCCCGCTAGCTGATGACGAAATTTGCCAGTTGCTC
TTGTTTCTTGTTAATATCGTTCAAGTTCAGATATTAGTTCTAAATTCTAGTCGATTTGGCCTCGTTTTGGTCTTCATATT
ATTGGCATTGAATAATGTTTGAGCTTGGTCTACAAACCCTTTTTTC-CCTCCGCCAAAACGTCCTCTCGTCCCCTCCGTC
TTCTTTTCTTG-AGTTGGAACCTGGTTGCATCTTCCGCG-GGAATTGTAGAAACTTGTATGCTTTCAACCAAAATTTGTA
TACTAATTTTTATGTAACCTAGCTCAATTTTGTACAAACTTGTCTGATATATATAGTCAAAAGTT---------------
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--------------------------------------------------------------TGAGCACTTAGACTAATT
GAAAAGTAGAAAGATGTAGCAGTCTCTTCACAAACAAGAATTAAAATATAAGTAGTACATTCCCTAATGATGTATATATA
GGATCTTCAATGTTTTTTCAACAATTCATATGACAATCGCTCAAGTGCATGAATAAGGTATACACATAACTAGTTGAATT
TATGATGTATCTCTCACAAAGTCTTGTACAACGGTTTGCACTGCAATAGGAATTCTCACTGAGTGGGTATTTTCATCCGA
CCATGTCAAACTCCCAAAGGTGTACCCACCTTGCACTCTCTTCCTTGCTATGAACATCACCGTAAACATCATGCTTTTGC
TACCACCTCTTGTAAAACTGATCATAGATGGCTCCACAGTTACGATTATACCTGCGGGAGCCTCAACCGTCACTCGGTAA
GTTGCTTCAACTGGCCCAACATTCATGACAGTGCGCCGGACTGTGATATTGTCTATGATGTCTGGCATGGCGATTGATGG
GAGGTTAAGATTGCTGATA
>chr6D_657
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----------------TAAATATTCTTGGCGTCCTAGCATGCGAAGACCGATCCAGAGTCAGGTTTCTGAGCCCCGCAAA
AATAAAAAAAGAGTCAGGTTTCTG-AGAGAAACGTCTGTAGTCTGTTGCATGTTCTTGATCAGCTCCTGAACACCCGCTC
CCAGCGCAA-------CCGTGGGGACGGTGCCCAGCCACACACACCGAGCAACGCCCGCAACCGTCGTGACTCCAGGCTA
AATCCGGCAACCCATCGCCGCCTTTTAAAGCGCGCGCCGCCGCGCCTCTCCTCCCGCTCGCCAGACTCCAGCGAAAAGGA
AAAGCTCCTGCACGTACCCCACGTTCCTGCCGCCTCCACACCACCCGCCGCCTACAGCATAACCAGCACGGTCATGGCGC
GCGTGTCGC---TGATGCTCGCCGCCGCGGTGCTCGCGTGCGCGCTGCTCGCTACCAGGCATGCGGCCGCCGCCGGGGCC
GCCGCCGCCGCCGCCGGAGCCGGCGCCGGCGCGGCGGCCCCCGCCCCCGGCGGCTTCGCGTGCAACCCGCTCAAGGACAA
GACGTGCAAGCTGGGGGAACCCAAGGCGCCGGAGGACACGGAGGAGGAGGGCGGGCTCGGCACGAAGCTGCCGTCCCTGA
CGTCGGTCTCCATTCCTGGTGCCGGCAAGGTCGACCGCGACGGCGATGGAGATACCGACGAGGACGACGAGCTGCCGTCG
TTCGACACCCACATGACCATCCTCGGCCACTGAGAGGATCCAAGCCTGACTTCTAAGCGCATGGTTGTAGTATCTTCTTG
CATTTGCGTTGCTTGTGTAGTTGTGTTGCTGCCCAGAAGAAAGAAACAGAAAAA--------------------------
----------GGAAAGGTATGAGAGAGTGAGCGTGTCACGATGATCCCCGCTAGCTGATGACGAAATTTGCCAGTTGCTC
TTGTTTCTTGTTAATATCGTTCAAGTTCAGATATTAGTTCTAAATTCTAGTTGATTTGGCCTCGTTTTGGTCTTCCTATT
GTTGGCATTGAATAATGTTTGAGCTTGGTCTACAAACCTTTCTTTT-CCTCCACCAAAACGTCCTCTCGTCCCCTCCGTC
TTCTTTTCTCG-AGTTGGAACCTGGTTGCATCTTCCGCG-GGAATTGTAGAAACTTGTATGCTTTCAACCAAAATTTGTA
TACTAATTTTTATGTAACCTAGTTCAATTTTGTACAAACTTGTCTGATATA----GTCAAAAGTTGCATACATTTCTTAG
GTTTCAAGTTGTAGGTACAAAACTGTAGCTTTTTAGTTGAGATGCTAAATTTATGGAGGTGGTTATCACCGATCTAACAA
CCAAG-TCTCATAGGCTTCATTCGAGAGACATCAAGGAGCCGATAATCCTACATCTACGTTAACCAGCTACGAAGACCTA
CGTAACCTGCCTGCCTAATCTTCTCGGCCCCCCTGATTTTTAGGGGGTGGGCCCCTTCTTGCCTAATGATCCACTAATGA
TGCTCGACGTTGCTATTTACGCAAATCACGTAACAAGTATTACGTAGGTCTAGCATTGCCCTCAAGGAGCAGGCCGGTTT
GTGGTGGGACTTCCTATCCTCACGCCCGTTTTGATCCTTGTAAACCTCTTCAAAGTTTTTTCTTTCTAAATATATTCAGA
TAGAGATTCTTTTCCCGTGTCAGTTTCAAGAAAAAGTTGTACGGAGATTTTTCATTTTAGTTGAAAGTTTGATTTATTTT
TCTTTCAACTTCTATTGAATGTTGATCACCAACGATGCAACTAGAAATAAAAGCTGGCGGTAGAGGAGGTAAACGGAGAG
GAGGCGCTTCTTCCCCACGGTGACTATTACGCTTAAATCTCTACTTTTGATCTACATAGAAAGTCATAATTTATGAGAGG
GTACATATATGTAAAGATCTTATTAGATTTTTCTTTTCTTCAGAATTCATGTTTTTGGCTCGATGGTTTGACTCTTTGAG
TTTAGTTTTGTTTGTTTTCATGTTGCAATTATAATTTTTCCTCAAACTGTTAGAAGACAGATGAAAATGTTGGATTCTCT
CGTTTGGTACAATTGTAGTAAGTGCCGTACTAATTAAGAAAAAAATAGACTCCCAAAACCCAAGTAAAGATAATCGATTT
TACAGATTTAAAACAAGGGACTAATTTTCTGAATTTTGCTATTTTGTTATAATCTACATAAGTGAGCACTTAAACCAACT
GTAAAGCAGAAAGATATAGCAGTCTCTTCACAACCAAGAATTAAAATATAAGTAGTACATTTCCTAATGATGTATATATA
GGATATTCAATGTTTTTCG-ACAATTCATATGACAATCATTCGAGTGCATGAATAAGGTATATACA----TAGTTGAATT
TATGATGTATCTCTCACAAAGTCTTGTACTACAGTTTGCACTGCAATAGGTATTCTCACTGAGTGGGTATTTTCATCCGA
CCATGTCAAACTCCCAATGGTGTACCCACCTTGCACTCTCTTCCTTGATGTGAACATCACCGTAAACATCATGCTTTTGC
TACCACCTCTTGTAAAACTGATCATAGATGGCTCCACAGTTACGATTACCCCTGTGGGAGCCTCAACCGTCACTCGGTAA
GTTGCTTCAACTGGCCCGACATTCATGACAGTGCGCCGGACTGTGATATTGTCTTTGAGGTCTGGCATGGCGATTGATGG
GAGGTTAAGATTGCTGATA
>chr6B_672
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-------------------------------TCCTAGCGTGCGAAGACTGATCCAGAGTCTATTG---------------
--------------CATGTTTCTGCAGAGAAACATCTGTGGTCCGTGGCATATTTTTGATCAGCTCCTGAACACCCGCTC
CGAGCGCAA-------CCGTGGGGACGGTGCCCAGCCACACACACCGAGCAACGCCCGCAACCGTCGTGCCTCCCGGCTA
AATCCGGCACCCCATCGCCGCCTTTTAAAGCGCGCGCCGCCGCGCCTCTCGTCCCTCTCGCCTGACTCCAGCGAAAAGGA
AAAGCTCCTGCACGTACCCCACGTTCGTGCCGCCTCCACACCACCCGCCGTCTACAGCATAACCAGCACGGTCATGGCGC
GCGTGTCCCTGATGATGCTCGCCGCCGTGGTGCTCGCGTGCGCGCTGCTCGCCACCAGGCATGCGGACGCCGCCGGGGCC
GGG---------------------GCCGGCGCGGCGGCCCCCGCCCCCGGCGGCTTCGCGTGCAACCCGCTCAAGGACAA
GACGTGCAAGCTGGGGGAACCCAAGGCGCCGGAGGACACGGAGGAGGAGGGCGGGCTCGGCACGAAGCTGCCGTCCCTGA
CGTCGGTCCCCATCCCGGGCGGCGGCAAGGTCGACCGCGACGGCGATGGAGACACCGACGAGGACGACGAGCTGCCGTCG
TTCGACACCCACATGACCATCCTCGGCCACTGAGAGGAGCCAAGCCTGACTTCT-AGCGCATGGTTGTAGTATCTTCTTG
CATTTGCGTTGCTTGTGTAGTTGTGTTGCTGCCCAGAAGAAACAGTCTGGCAAAAAAAAAAAAAAGAAGAAGAAGAAAGA
AACAGAAAAAGGAAAGAGATGAGAGAGCGAGCGTGTCACGATGATCCCCGCTAGCTGATGACGAAATTTGCCGGTTGCTC
TTGTTTCTTGTTAATGTCGTTGAAGTTCAGATATTAGTTCTAAATTCTAGTTGATTTAGCCTCGTTTTGGTCTTCCTATT
GTTGGCATTCAATAATGTTTGAGCTTGGTCTACAGACCTTTTTTTTTCCTCCGCCAAAACGTCCTCTCGTCCCCTCCGTC
TTCTTTTCATGAAGTTGGAACCTAGTTGCATCTTCCGCGAGGAATTGTAGAAACTTGTATGCTTTCAACCAAAATTTGTA
CTATAATTTTGTTGTAACCTAGTTCAGTTTTGTACAAACTTGTCTGATTTTAA---TCAAAAGTCGCATACATTTGTTAG
GTTTGAAGTTGTAGGTAC--AACTGTAGCTTTTTAGTTGAAATGCTAAAATTATGGAGGTGGTTATCACCGATCTGACAA
CCATAATCTCAGAGGATTCATCCGAGAGACCTCAAAGAGCAAGCCGGTCTCGGAGGATTCAGTTCGTGAA----------
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--------------------------------------------------------------TGAGCACTTAGACTAACT
GAAAAGTAGAAAGATGTAGCAGTCTCTTCACAAACAAGAATTAAAATATAAGTAGTACATTTCCTAATGATGTATATATA
GGGTCTTCAATGTTTTTTCAACAATTCATATGCG-----TTCAAGTGCATGAATAAGATATACACATAACTAGTTGAATT
TATGATGTATCTCTCACAAAGTCTTGTACTACAGTTTGCACCGCAATAGGTATTCTCACTGAGTGGGTATTTTCATCCGA
CCATGTCAAACTCCCAAAGGTGTACCCACCTTGCACTCTCTTCCTTGCTGTGAACATCACCGTAAACATCATGCTTTTGC
TACCACCTCTTGTAAAACTGATCATAGATGGCTCCACAGTTACGGTTACCCCTGCGGGAGCCTCAACCGTCACTCGGTAA
GTTGCTTCAACTGACCCGACATTCATGACAATGCGCCGGACTGTGATATTGTCTTTGAGGTCTGGCATGGCGATTGATGG
GAGGTTAAGATTGCTGATA
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSS----------------------------------------------SS----------------
------------------------S-------------------------------------------S-----------
------S--SSSSSSS---------------------------S------------------------------------
---------S------S-------------------------S------------------------S-----S------
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----------------S---------------------------S-----------------------------------
----------------------S-------S----------------------------S--------S-----------
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----SS--------------------------------------------------------------------------
----------------------------------------------------------S---------------------
-------------------------------------------------------SS-----------------------
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---------------------------------------------------S-----------------------S----
S-------------------------------------S------S----------------------------------
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----------------------S----------------------------S-SS-------------------------
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------------------------------------------------------------------------------S-
-------------------------------------------------------------S------------------
--------------------------------------SS----------------------------------------
-----------------------------S--S-----------------S-----------------------------
-------------------------------------------------S------------------------------
------------------------------------------------SS------------------------------
-----------------S------------------------------------S---S---------------------
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>forward_567
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-------------------------------------------------------------------GACGACTCTGTGA
ACAGCGA-------------------------------------------------------------------------
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>reverse_3339
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----------------------------------------------------------TGTCTGGCATGGCGATTGAT--
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