Multiple sequence alignment - TraesCS6A01G164500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G164500 chr6A 100.000 2219 0 0 1 2219 162309336 162311554 0.000000e+00 4098.0
1 TraesCS6A01G164500 chr6A 82.953 569 83 11 267 828 521649560 521648999 3.290000e-138 501.0
2 TraesCS6A01G164500 chr6A 88.028 284 27 3 990 1270 521648930 521648651 1.640000e-86 329.0
3 TraesCS6A01G164500 chr6B 89.733 1987 118 31 1 1951 213468266 213466330 0.000000e+00 2460.0
4 TraesCS6A01G164500 chr6B 86.972 284 30 4 990 1270 567611687 567611408 1.650000e-81 313.0
5 TraesCS6A01G164500 chr6B 94.030 67 4 0 1156 1222 695474331 695474265 3.900000e-18 102.0
6 TraesCS6A01G164500 chr6B 88.235 85 4 1 2141 2219 213466302 213466218 1.810000e-16 97.1
7 TraesCS6A01G164500 chr6D 88.309 1283 84 22 1 1272 136390442 136389215 0.000000e+00 1478.0
8 TraesCS6A01G164500 chr6D 94.516 930 36 7 1 928 121344946 121345862 0.000000e+00 1421.0
9 TraesCS6A01G164500 chr6D 84.375 1024 93 35 985 1945 121345883 121346902 0.000000e+00 942.0
10 TraesCS6A01G164500 chr6D 88.380 284 26 4 990 1270 379339096 379339375 3.530000e-88 335.0
11 TraesCS6A01G164500 chr6D 96.341 82 3 0 2138 2219 121346933 121347014 3.840000e-28 135.0
12 TraesCS6A01G164500 chr7A 77.917 240 41 8 1021 1254 173638635 173638868 2.970000e-29 139.0
13 TraesCS6A01G164500 chr7B 77.500 240 42 8 1021 1254 137026833 137027066 1.380000e-27 134.0
14 TraesCS6A01G164500 chr3D 85.455 55 5 1 1129 1183 136564735 136564786 1.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G164500 chr6A 162309336 162311554 2218 False 4098.000000 4098 100.0000 1 2219 1 chr6A.!!$F1 2218
1 TraesCS6A01G164500 chr6A 521648651 521649560 909 True 415.000000 501 85.4905 267 1270 2 chr6A.!!$R1 1003
2 TraesCS6A01G164500 chr6B 213466218 213468266 2048 True 1278.550000 2460 88.9840 1 2219 2 chr6B.!!$R3 2218
3 TraesCS6A01G164500 chr6D 136389215 136390442 1227 True 1478.000000 1478 88.3090 1 1272 1 chr6D.!!$R1 1271
4 TraesCS6A01G164500 chr6D 121344946 121347014 2068 False 832.666667 1421 91.7440 1 2219 3 chr6D.!!$F2 2218

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
248 252 0.032952 GTATGGGGCTGCATGCATTG 59.967 55.0 22.97 12.0 45.15 2.82 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1299 1342 0.043224 CCTCGTCGTCATCGTCTACG 60.043 60.0 0.0 0.0 40.4 3.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
36 37 1.296392 CCTCCGTGATGTCCAGCAA 59.704 57.895 0.00 0.00 0.00 3.91
135 139 3.754965 CCCAAAGACAAACCATCAGAGA 58.245 45.455 0.00 0.00 0.00 3.10
136 140 4.338879 CCCAAAGACAAACCATCAGAGAT 58.661 43.478 0.00 0.00 0.00 2.75
137 141 4.397417 CCCAAAGACAAACCATCAGAGATC 59.603 45.833 0.00 0.00 0.00 2.75
138 142 5.005740 CCAAAGACAAACCATCAGAGATCA 58.994 41.667 0.00 0.00 0.00 2.92
142 146 4.776837 AGACAAACCATCAGAGATCAGACT 59.223 41.667 0.00 0.00 0.00 3.24
202 206 1.202452 GCAGCCAACTTTCTTGTTGCT 60.202 47.619 0.00 0.00 44.12 3.91
247 251 1.457823 CGTATGGGGCTGCATGCATT 61.458 55.000 22.97 4.85 45.15 3.56
248 252 0.032952 GTATGGGGCTGCATGCATTG 59.967 55.000 22.97 12.00 45.15 2.82
295 299 4.351938 CGGAACTCGGCCACGACA 62.352 66.667 2.24 0.00 45.59 4.35
694 710 4.400961 GCGCTGGAGAGGTTGGCT 62.401 66.667 0.00 0.00 0.00 4.75
706 722 1.147817 AGGTTGGCTTTGACCAGGAAT 59.852 47.619 0.00 0.00 41.82 3.01
760 776 1.139095 GCCGTAGTGGAAGTCTCGG 59.861 63.158 0.00 0.00 42.00 4.63
843 859 0.593518 TGCAACATGTTCAAACGCCG 60.594 50.000 8.48 0.00 0.00 6.46
878 896 1.516603 GCGGCTAGAAGTGGACGAC 60.517 63.158 0.00 0.00 0.00 4.34
900 919 3.104766 GTGCCATGCATGAGTCGG 58.895 61.111 28.31 11.98 41.91 4.79
940 962 2.337361 TCGACTCGAGTTGCCAAGA 58.663 52.632 25.44 12.72 0.00 3.02
942 964 1.347817 CGACTCGAGTTGCCAAGAGC 61.348 60.000 21.08 2.11 44.14 4.09
955 977 2.758009 CCAAGAGCAATGGGTTGTTTG 58.242 47.619 0.00 0.00 37.65 2.93
956 978 2.102925 CCAAGAGCAATGGGTTGTTTGT 59.897 45.455 0.00 0.00 37.65 2.83
958 980 1.963515 AGAGCAATGGGTTGTTTGTCC 59.036 47.619 0.00 0.00 37.65 4.02
960 982 2.102252 GAGCAATGGGTTGTTTGTCCAA 59.898 45.455 0.00 0.00 37.65 3.53
962 984 2.158971 GCAATGGGTTGTTTGTCCAACT 60.159 45.455 4.29 0.00 43.36 3.16
963 985 3.456280 CAATGGGTTGTTTGTCCAACTG 58.544 45.455 4.29 0.00 43.36 3.16
971 999 3.141398 TGTTTGTCCAACTGAGCAGATC 58.859 45.455 4.21 0.00 36.21 2.75
983 1011 3.693245 CAGATCTGCCGTGTACGC 58.307 61.111 10.38 0.00 38.18 4.42
1011 1048 1.217511 CGACAGGATGCAGAGCAGT 59.782 57.895 0.00 0.00 43.65 4.40
1053 1090 4.493747 GAGTCCCCGACGAAGGCG 62.494 72.222 0.00 0.00 44.79 5.52
1346 1413 1.445410 CCGGCGAAGTTGACGATGA 60.445 57.895 9.30 0.00 0.00 2.92
1353 1423 3.789791 GCGAAGTTGACGATGATACGGTA 60.790 47.826 0.00 0.00 37.61 4.02
1431 1504 3.925238 GAGGCGCGGCGTATGTTG 61.925 66.667 27.74 0.00 0.00 3.33
1437 1510 1.352882 CGCGGCGTATGTTGTGGTAA 61.353 55.000 15.36 0.00 0.00 2.85
1438 1511 0.372334 GCGGCGTATGTTGTGGTAAG 59.628 55.000 9.37 0.00 0.00 2.34
1446 1522 1.310904 TGTTGTGGTAAGTTTCGGCC 58.689 50.000 0.00 0.00 0.00 6.13
1557 1633 0.322816 TGCTCTTGTGGGGCTTCATC 60.323 55.000 0.00 0.00 0.00 2.92
1589 1665 2.075489 GGCGTACGCGATCGAGATG 61.075 63.158 31.78 14.34 43.06 2.90
1617 1693 2.584391 GGAAGGTGACGGGCAGAGT 61.584 63.158 0.00 0.00 0.00 3.24
1656 1769 9.546428 AAGAAGAAGAAGAAGAAGAAGAAGAAG 57.454 33.333 0.00 0.00 0.00 2.85
1657 1770 8.923270 AGAAGAAGAAGAAGAAGAAGAAGAAGA 58.077 33.333 0.00 0.00 0.00 2.87
1658 1771 9.541143 GAAGAAGAAGAAGAAGAAGAAGAAGAA 57.459 33.333 0.00 0.00 0.00 2.52
1660 1773 8.923270 AGAAGAAGAAGAAGAAGAAGAAGAAGA 58.077 33.333 0.00 0.00 0.00 2.87
1661 1774 9.541143 GAAGAAGAAGAAGAAGAAGAAGAAGAA 57.459 33.333 0.00 0.00 0.00 2.52
1662 1775 9.546428 AAGAAGAAGAAGAAGAAGAAGAAGAAG 57.454 33.333 0.00 0.00 0.00 2.85
1663 1776 8.923270 AGAAGAAGAAGAAGAAGAAGAAGAAGA 58.077 33.333 0.00 0.00 0.00 2.87
1664 1777 9.541143 GAAGAAGAAGAAGAAGAAGAAGAAGAA 57.459 33.333 0.00 0.00 0.00 2.52
1665 1778 9.546428 AAGAAGAAGAAGAAGAAGAAGAAGAAG 57.454 33.333 0.00 0.00 0.00 2.85
1666 1779 8.923270 AGAAGAAGAAGAAGAAGAAGAAGAAGA 58.077 33.333 0.00 0.00 0.00 2.87
1667 1780 9.541143 GAAGAAGAAGAAGAAGAAGAAGAAGAA 57.459 33.333 0.00 0.00 0.00 2.52
1668 1781 9.546428 AAGAAGAAGAAGAAGAAGAAGAAGAAG 57.454 33.333 0.00 0.00 0.00 2.85
1669 1782 8.923270 AGAAGAAGAAGAAGAAGAAGAAGAAGA 58.077 33.333 0.00 0.00 0.00 2.87
1670 1783 9.541143 GAAGAAGAAGAAGAAGAAGAAGAAGAA 57.459 33.333 0.00 0.00 0.00 2.52
1671 1784 9.546428 AAGAAGAAGAAGAAGAAGAAGAAGAAG 57.454 33.333 0.00 0.00 0.00 2.85
1672 1785 8.923270 AGAAGAAGAAGAAGAAGAAGAAGAAGA 58.077 33.333 0.00 0.00 0.00 2.87
1673 1786 9.541143 GAAGAAGAAGAAGAAGAAGAAGAAGAA 57.459 33.333 0.00 0.00 0.00 2.52
1674 1787 9.546428 AAGAAGAAGAAGAAGAAGAAGAAGAAG 57.454 33.333 0.00 0.00 0.00 2.85
1675 1788 8.923270 AGAAGAAGAAGAAGAAGAAGAAGAAGA 58.077 33.333 0.00 0.00 0.00 2.87
1676 1789 9.541143 GAAGAAGAAGAAGAAGAAGAAGAAGAA 57.459 33.333 0.00 0.00 0.00 2.52
1677 1790 9.546428 AAGAAGAAGAAGAAGAAGAAGAAGAAG 57.454 33.333 0.00 0.00 0.00 2.85
1678 1791 8.923270 AGAAGAAGAAGAAGAAGAAGAAGAAGA 58.077 33.333 0.00 0.00 0.00 2.87
1679 1792 9.541143 GAAGAAGAAGAAGAAGAAGAAGAAGAA 57.459 33.333 0.00 0.00 0.00 2.52
1680 1793 9.546428 AAGAAGAAGAAGAAGAAGAAGAAGAAG 57.454 33.333 0.00 0.00 0.00 2.85
1684 1797 4.039852 AGAAGAAGAAGAAGAAGAAGGCGT 59.960 41.667 0.00 0.00 0.00 5.68
1756 1897 3.143728 GGTCAAAGCCGTTTCTCCTTTA 58.856 45.455 0.00 0.00 0.00 1.85
1767 1908 1.226603 CTCCTTTAGCGACGGACCG 60.227 63.158 13.61 13.61 0.00 4.79
1888 2030 1.271325 TGGTTGTGGCATTCTGACGAT 60.271 47.619 0.00 0.00 0.00 3.73
1916 2058 0.371645 CGAGCGAGTCAAATTCAGGC 59.628 55.000 0.00 0.00 0.00 4.85
1934 2076 1.210931 CGGCCACACAAATCTGCAG 59.789 57.895 7.63 7.63 0.00 4.41
1945 2087 3.953612 ACAAATCTGCAGGTTCTGAAACA 59.046 39.130 13.77 0.00 37.10 2.83
1947 2089 3.777106 ATCTGCAGGTTCTGAAACAGA 57.223 42.857 15.13 11.17 38.87 3.41
1948 2090 2.838736 TCTGCAGGTTCTGAAACAGAC 58.161 47.619 15.13 0.00 40.46 3.51
1949 2091 2.435805 TCTGCAGGTTCTGAAACAGACT 59.564 45.455 15.13 0.00 40.46 3.24
1950 2092 3.641436 TCTGCAGGTTCTGAAACAGACTA 59.359 43.478 15.13 0.00 40.46 2.59
1951 2093 3.728845 TGCAGGTTCTGAAACAGACTAC 58.271 45.455 8.34 0.00 40.46 2.73
1952 2094 3.388024 TGCAGGTTCTGAAACAGACTACT 59.612 43.478 8.34 0.00 40.46 2.57
1966 2108 2.075338 GACTACTAGTAGGATCGCCGG 58.925 57.143 29.05 0.00 39.96 6.13
1967 2109 1.696336 ACTACTAGTAGGATCGCCGGA 59.304 52.381 29.05 0.00 39.96 5.14
1968 2110 2.305343 ACTACTAGTAGGATCGCCGGAT 59.695 50.000 29.05 5.80 39.96 4.18
1969 2111 1.823797 ACTAGTAGGATCGCCGGATC 58.176 55.000 5.05 0.00 46.85 3.36
1981 2123 4.918201 CGGATCCGGCTTGCTCCC 62.918 72.222 26.95 0.00 35.56 4.30
1982 2124 3.797353 GGATCCGGCTTGCTCCCA 61.797 66.667 0.00 0.00 0.00 4.37
1983 2125 2.514824 GATCCGGCTTGCTCCCAC 60.515 66.667 0.00 0.00 0.00 4.61
1984 2126 4.115199 ATCCGGCTTGCTCCCACC 62.115 66.667 0.00 0.00 0.00 4.61
1987 2129 4.335647 CGGCTTGCTCCCACCTGT 62.336 66.667 0.00 0.00 0.00 4.00
1988 2130 2.360475 GGCTTGCTCCCACCTGTC 60.360 66.667 0.00 0.00 0.00 3.51
1989 2131 2.753029 GCTTGCTCCCACCTGTCT 59.247 61.111 0.00 0.00 0.00 3.41
1990 2132 1.073897 GCTTGCTCCCACCTGTCTT 59.926 57.895 0.00 0.00 0.00 3.01
1991 2133 0.538287 GCTTGCTCCCACCTGTCTTT 60.538 55.000 0.00 0.00 0.00 2.52
1992 2134 1.986882 CTTGCTCCCACCTGTCTTTT 58.013 50.000 0.00 0.00 0.00 2.27
1993 2135 2.310538 CTTGCTCCCACCTGTCTTTTT 58.689 47.619 0.00 0.00 0.00 1.94
2027 2169 9.929180 TTCTTTATAATGTAATCATCTCTCCCG 57.071 33.333 0.00 0.00 32.56 5.14
2028 2170 8.035394 TCTTTATAATGTAATCATCTCTCCCGC 58.965 37.037 0.00 0.00 32.56 6.13
2029 2171 7.482169 TTATAATGTAATCATCTCTCCCGCT 57.518 36.000 0.00 0.00 32.56 5.52
2030 2172 3.674528 ATGTAATCATCTCTCCCGCTG 57.325 47.619 0.00 0.00 0.00 5.18
2031 2173 2.666317 TGTAATCATCTCTCCCGCTGA 58.334 47.619 0.00 0.00 0.00 4.26
2032 2174 3.234353 TGTAATCATCTCTCCCGCTGAT 58.766 45.455 0.00 0.00 0.00 2.90
2033 2175 3.643320 TGTAATCATCTCTCCCGCTGATT 59.357 43.478 0.00 0.00 40.44 2.57
2034 2176 3.853355 AATCATCTCTCCCGCTGATTT 57.147 42.857 0.00 0.00 35.38 2.17
2035 2177 3.853355 ATCATCTCTCCCGCTGATTTT 57.147 42.857 0.00 0.00 0.00 1.82
2036 2178 4.963318 ATCATCTCTCCCGCTGATTTTA 57.037 40.909 0.00 0.00 0.00 1.52
2037 2179 4.753516 TCATCTCTCCCGCTGATTTTAA 57.246 40.909 0.00 0.00 0.00 1.52
2038 2180 4.697514 TCATCTCTCCCGCTGATTTTAAG 58.302 43.478 0.00 0.00 0.00 1.85
2039 2181 2.906354 TCTCTCCCGCTGATTTTAAGC 58.094 47.619 0.00 0.00 37.31 3.09
2046 2188 0.455815 GCTGATTTTAAGCGGGTGGG 59.544 55.000 0.00 0.00 0.00 4.61
2047 2189 1.953311 GCTGATTTTAAGCGGGTGGGA 60.953 52.381 0.00 0.00 0.00 4.37
2048 2190 2.442413 CTGATTTTAAGCGGGTGGGAA 58.558 47.619 0.00 0.00 0.00 3.97
2049 2191 2.163613 CTGATTTTAAGCGGGTGGGAAC 59.836 50.000 0.00 0.00 0.00 3.62
2050 2192 1.131693 GATTTTAAGCGGGTGGGAACG 59.868 52.381 0.00 0.00 0.00 3.95
2051 2193 0.108207 TTTTAAGCGGGTGGGAACGA 59.892 50.000 0.00 0.00 0.00 3.85
2052 2194 0.108207 TTTAAGCGGGTGGGAACGAA 59.892 50.000 0.00 0.00 0.00 3.85
2053 2195 0.603439 TTAAGCGGGTGGGAACGAAC 60.603 55.000 0.00 0.00 0.00 3.95
2054 2196 2.453379 TAAGCGGGTGGGAACGAACC 62.453 60.000 0.00 0.00 35.33 3.62
2055 2197 4.324991 GCGGGTGGGAACGAACCT 62.325 66.667 0.00 0.00 36.21 3.50
2056 2198 2.428622 CGGGTGGGAACGAACCTT 59.571 61.111 0.00 0.00 36.21 3.50
2057 2199 1.672898 CGGGTGGGAACGAACCTTA 59.327 57.895 0.00 0.00 36.21 2.69
2058 2200 0.251073 CGGGTGGGAACGAACCTTAT 59.749 55.000 0.00 0.00 36.21 1.73
2059 2201 1.339342 CGGGTGGGAACGAACCTTATT 60.339 52.381 0.00 0.00 36.21 1.40
2060 2202 2.799017 GGGTGGGAACGAACCTTATTT 58.201 47.619 0.00 0.00 36.21 1.40
2061 2203 3.159472 GGGTGGGAACGAACCTTATTTT 58.841 45.455 0.00 0.00 36.21 1.82
2062 2204 3.057104 GGGTGGGAACGAACCTTATTTTG 60.057 47.826 0.00 0.00 36.21 2.44
2063 2205 3.570975 GGTGGGAACGAACCTTATTTTGT 59.429 43.478 0.00 0.00 33.58 2.83
2064 2206 4.038282 GGTGGGAACGAACCTTATTTTGTT 59.962 41.667 0.00 0.00 36.04 2.83
2065 2207 5.452216 GGTGGGAACGAACCTTATTTTGTTT 60.452 40.000 0.00 0.00 33.89 2.83
2066 2208 5.460748 GTGGGAACGAACCTTATTTTGTTTG 59.539 40.000 0.00 0.00 33.89 2.93
2067 2209 5.127356 TGGGAACGAACCTTATTTTGTTTGT 59.873 36.000 0.00 0.00 40.06 2.83
2068 2210 6.044046 GGGAACGAACCTTATTTTGTTTGTT 58.956 36.000 7.52 7.52 46.57 2.83
2069 2211 7.147949 TGGGAACGAACCTTATTTTGTTTGTTA 60.148 33.333 7.72 0.00 44.88 2.41
2070 2212 7.167968 GGGAACGAACCTTATTTTGTTTGTTAC 59.832 37.037 8.55 8.55 44.88 2.50
2071 2213 7.701501 GGAACGAACCTTATTTTGTTTGTTACA 59.298 33.333 11.18 0.00 44.88 2.41
2072 2214 8.983307 AACGAACCTTATTTTGTTTGTTACAA 57.017 26.923 6.28 0.00 43.72 2.41
2073 2215 9.589111 AACGAACCTTATTTTGTTTGTTACAAT 57.411 25.926 0.00 0.00 45.72 2.71
2074 2216 9.240159 ACGAACCTTATTTTGTTTGTTACAATC 57.760 29.630 0.00 0.00 45.72 2.67
2075 2217 9.239002 CGAACCTTATTTTGTTTGTTACAATCA 57.761 29.630 4.90 4.90 45.72 2.57
2085 2227 9.645059 TTTGTTTGTTACAATCAAATCAAGTCA 57.355 25.926 22.62 6.08 45.72 3.41
2086 2228 9.645059 TTGTTTGTTACAATCAAATCAAGTCAA 57.355 25.926 16.30 0.00 41.73 3.18
2087 2229 9.299963 TGTTTGTTACAATCAAATCAAGTCAAG 57.700 29.630 6.40 0.00 37.18 3.02
2088 2230 9.301153 GTTTGTTACAATCAAATCAAGTCAAGT 57.699 29.630 0.00 0.00 37.18 3.16
2095 2237 8.950210 ACAATCAAATCAAGTCAAGTATGTAGG 58.050 33.333 0.00 0.00 0.00 3.18
2096 2238 9.166173 CAATCAAATCAAGTCAAGTATGTAGGA 57.834 33.333 0.00 0.00 0.00 2.94
2097 2239 8.954950 ATCAAATCAAGTCAAGTATGTAGGAG 57.045 34.615 0.00 0.00 0.00 3.69
2098 2240 6.818644 TCAAATCAAGTCAAGTATGTAGGAGC 59.181 38.462 0.00 0.00 0.00 4.70
2099 2241 5.939764 ATCAAGTCAAGTATGTAGGAGCA 57.060 39.130 0.00 0.00 0.00 4.26
2100 2242 5.073311 TCAAGTCAAGTATGTAGGAGCAC 57.927 43.478 0.00 0.00 0.00 4.40
2101 2243 3.784701 AGTCAAGTATGTAGGAGCACG 57.215 47.619 0.00 0.00 0.00 5.34
2102 2244 3.353557 AGTCAAGTATGTAGGAGCACGA 58.646 45.455 0.00 0.00 0.00 4.35
2103 2245 3.762288 AGTCAAGTATGTAGGAGCACGAA 59.238 43.478 0.00 0.00 0.00 3.85
2104 2246 4.402793 AGTCAAGTATGTAGGAGCACGAAT 59.597 41.667 0.00 0.00 0.00 3.34
2105 2247 4.504461 GTCAAGTATGTAGGAGCACGAATG 59.496 45.833 0.00 0.00 0.00 2.67
2106 2248 3.735237 AGTATGTAGGAGCACGAATGG 57.265 47.619 0.00 0.00 0.00 3.16
2107 2249 2.365617 AGTATGTAGGAGCACGAATGGG 59.634 50.000 0.00 0.00 0.00 4.00
2108 2250 1.496060 ATGTAGGAGCACGAATGGGA 58.504 50.000 0.00 0.00 0.00 4.37
2109 2251 0.824109 TGTAGGAGCACGAATGGGAG 59.176 55.000 0.00 0.00 0.00 4.30
2110 2252 0.530870 GTAGGAGCACGAATGGGAGC 60.531 60.000 0.00 0.00 0.00 4.70
2111 2253 0.975556 TAGGAGCACGAATGGGAGCA 60.976 55.000 0.00 0.00 0.00 4.26
2112 2254 1.153086 GGAGCACGAATGGGAGCAT 60.153 57.895 0.00 0.00 0.00 3.79
2113 2255 1.442526 GGAGCACGAATGGGAGCATG 61.443 60.000 0.00 0.00 0.00 4.06
2114 2256 2.056481 GAGCACGAATGGGAGCATGC 62.056 60.000 10.51 10.51 0.00 4.06
2115 2257 2.409055 GCACGAATGGGAGCATGCA 61.409 57.895 21.98 0.00 33.27 3.96
2116 2258 1.936436 GCACGAATGGGAGCATGCAA 61.936 55.000 21.98 2.37 33.27 4.08
2117 2259 0.099968 CACGAATGGGAGCATGCAAG 59.900 55.000 21.98 4.00 0.00 4.01
2118 2260 0.322816 ACGAATGGGAGCATGCAAGT 60.323 50.000 21.98 0.00 0.00 3.16
2119 2261 0.379669 CGAATGGGAGCATGCAAGTC 59.620 55.000 21.98 8.78 0.00 3.01
2120 2262 1.760192 GAATGGGAGCATGCAAGTCT 58.240 50.000 21.98 0.00 0.00 3.24
2121 2263 1.674962 GAATGGGAGCATGCAAGTCTC 59.325 52.381 21.98 9.55 0.00 3.36
2122 2264 0.463295 ATGGGAGCATGCAAGTCTCG 60.463 55.000 21.98 0.00 0.00 4.04
2123 2265 1.078848 GGGAGCATGCAAGTCTCGT 60.079 57.895 21.98 0.00 0.00 4.18
2124 2266 1.086634 GGGAGCATGCAAGTCTCGTC 61.087 60.000 21.98 5.57 0.00 4.20
2125 2267 0.108424 GGAGCATGCAAGTCTCGTCT 60.108 55.000 21.98 0.00 0.00 4.18
2126 2268 1.135139 GGAGCATGCAAGTCTCGTCTA 59.865 52.381 21.98 0.00 0.00 2.59
2127 2269 2.458951 GAGCATGCAAGTCTCGTCTAG 58.541 52.381 21.98 0.00 0.00 2.43
2128 2270 1.135915 AGCATGCAAGTCTCGTCTAGG 59.864 52.381 21.98 0.00 0.00 3.02
2129 2271 1.135139 GCATGCAAGTCTCGTCTAGGA 59.865 52.381 14.21 0.00 0.00 2.94
2130 2272 2.223923 GCATGCAAGTCTCGTCTAGGAT 60.224 50.000 14.21 0.00 0.00 3.24
2131 2273 3.637432 CATGCAAGTCTCGTCTAGGATC 58.363 50.000 0.00 0.00 0.00 3.36
2132 2274 1.671328 TGCAAGTCTCGTCTAGGATCG 59.329 52.381 0.00 0.00 0.00 3.69
2133 2275 1.671845 GCAAGTCTCGTCTAGGATCGT 59.328 52.381 0.00 0.00 0.00 3.73
2134 2276 2.871022 GCAAGTCTCGTCTAGGATCGTA 59.129 50.000 0.00 0.00 0.00 3.43
2135 2277 3.311871 GCAAGTCTCGTCTAGGATCGTAA 59.688 47.826 0.00 0.00 0.00 3.18
2136 2278 4.553156 GCAAGTCTCGTCTAGGATCGTAAG 60.553 50.000 0.00 0.00 0.00 2.34
2139 2281 3.059461 GTCTCGTCTAGGATCGTAAGCAG 60.059 52.174 0.00 0.00 37.18 4.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
142 146 4.662961 CGAGTGGCTGGTGACGCA 62.663 66.667 0.00 0.00 33.25 5.24
175 179 1.539776 GAAAGTTGGCTGCAAACGCG 61.540 55.000 13.89 3.53 32.65 6.01
176 180 0.249031 AGAAAGTTGGCTGCAAACGC 60.249 50.000 13.89 8.05 32.65 4.84
177 181 1.854126 CAAGAAAGTTGGCTGCAAACG 59.146 47.619 13.89 0.00 32.65 3.60
178 182 2.892374 ACAAGAAAGTTGGCTGCAAAC 58.108 42.857 11.99 11.99 0.00 2.93
185 189 1.211743 GCAGCAACAAGAAAGTTGGC 58.788 50.000 8.66 1.56 46.81 4.52
190 194 0.581529 TCGACGCAGCAACAAGAAAG 59.418 50.000 0.00 0.00 0.00 2.62
202 206 0.805614 CCTCTCTCTTTCTCGACGCA 59.194 55.000 0.00 0.00 0.00 5.24
247 251 1.002624 GGGAAACGGAGACCATGCA 60.003 57.895 0.00 0.00 0.00 3.96
248 252 1.002624 TGGGAAACGGAGACCATGC 60.003 57.895 0.00 0.00 0.00 4.06
249 253 0.676782 GGTGGGAAACGGAGACCATG 60.677 60.000 0.00 0.00 35.13 3.66
250 254 0.840722 AGGTGGGAAACGGAGACCAT 60.841 55.000 0.00 0.00 35.13 3.55
251 255 1.460689 AGGTGGGAAACGGAGACCA 60.461 57.895 0.00 0.00 0.00 4.02
255 259 2.742372 CGCAGGTGGGAAACGGAG 60.742 66.667 0.00 0.00 0.00 4.63
680 696 1.528129 GTCAAAGCCAACCTCTCCAG 58.472 55.000 0.00 0.00 0.00 3.86
694 710 0.608035 GGTCGCCATTCCTGGTCAAA 60.608 55.000 0.00 0.00 45.10 2.69
706 722 2.989253 TCGCTCTTCTGGTCGCCA 60.989 61.111 0.00 0.00 0.00 5.69
940 962 1.786937 TGGACAAACAACCCATTGCT 58.213 45.000 0.00 0.00 39.66 3.91
1011 1048 1.476833 GCCAGGAACCACTTCAAGTCA 60.477 52.381 0.00 0.00 0.00 3.41
1053 1090 0.466922 CCATGAGGGGCAAGTCCATC 60.467 60.000 0.00 0.00 38.04 3.51
1092 1129 3.155167 GACCTCCCCCGCTTCGAT 61.155 66.667 0.00 0.00 0.00 3.59
1295 1338 0.314898 GTCGTCATCGTCTACGTCGG 60.315 60.000 0.00 0.00 39.99 4.79
1299 1342 0.043224 CCTCGTCGTCATCGTCTACG 60.043 60.000 0.00 0.00 40.40 3.51
1301 1344 1.568606 CTCCTCGTCGTCATCGTCTA 58.431 55.000 0.00 0.00 38.33 2.59
1302 1345 1.090625 CCTCCTCGTCGTCATCGTCT 61.091 60.000 0.00 0.00 38.33 4.18
1307 1362 0.811915 CAACTCCTCCTCGTCGTCAT 59.188 55.000 0.00 0.00 0.00 3.06
1308 1363 1.241990 CCAACTCCTCCTCGTCGTCA 61.242 60.000 0.00 0.00 0.00 4.35
1311 1366 2.182030 GCCAACTCCTCCTCGTCG 59.818 66.667 0.00 0.00 0.00 5.12
1346 1413 3.292936 CGGCTCCGGCTACCGTAT 61.293 66.667 18.14 0.00 46.80 3.06
1368 1438 4.436998 GCCACCACCTCCTCGTCG 62.437 72.222 0.00 0.00 0.00 5.12
1390 1460 1.421480 TCATCCTCTGCATCTCCTGG 58.579 55.000 0.00 0.00 0.00 4.45
1391 1461 2.699321 TCTTCATCCTCTGCATCTCCTG 59.301 50.000 0.00 0.00 0.00 3.86
1392 1462 2.967201 CTCTTCATCCTCTGCATCTCCT 59.033 50.000 0.00 0.00 0.00 3.69
1394 1464 2.964464 TCCTCTTCATCCTCTGCATCTC 59.036 50.000 0.00 0.00 0.00 2.75
1395 1465 2.967201 CTCCTCTTCATCCTCTGCATCT 59.033 50.000 0.00 0.00 0.00 2.90
1398 1468 1.493861 CCTCCTCTTCATCCTCTGCA 58.506 55.000 0.00 0.00 0.00 4.41
1430 1503 1.134037 ACTTGGCCGAAACTTACCACA 60.134 47.619 0.00 0.00 0.00 4.17
1431 1504 1.601166 ACTTGGCCGAAACTTACCAC 58.399 50.000 0.00 0.00 0.00 4.16
1437 1510 1.947456 GACTTCAACTTGGCCGAAACT 59.053 47.619 0.00 0.00 0.00 2.66
1438 1511 1.333791 CGACTTCAACTTGGCCGAAAC 60.334 52.381 0.00 0.00 0.00 2.78
1589 1665 1.067495 CGTCACCTTCCTCAACTCCTC 60.067 57.143 0.00 0.00 0.00 3.71
1617 1693 3.006859 TCTTCTTCTTCTTCCACATGCGA 59.993 43.478 0.00 0.00 0.00 5.10
1656 1769 7.095229 GCCTTCTTCTTCTTCTTCTTCTTCTTC 60.095 40.741 0.00 0.00 0.00 2.87
1657 1770 6.710295 GCCTTCTTCTTCTTCTTCTTCTTCTT 59.290 38.462 0.00 0.00 0.00 2.52
1658 1771 6.230472 GCCTTCTTCTTCTTCTTCTTCTTCT 58.770 40.000 0.00 0.00 0.00 2.85
1660 1773 4.994217 CGCCTTCTTCTTCTTCTTCTTCTT 59.006 41.667 0.00 0.00 0.00 2.52
1661 1774 4.039852 ACGCCTTCTTCTTCTTCTTCTTCT 59.960 41.667 0.00 0.00 0.00 2.85
1662 1775 4.311606 ACGCCTTCTTCTTCTTCTTCTTC 58.688 43.478 0.00 0.00 0.00 2.87
1663 1776 4.344359 ACGCCTTCTTCTTCTTCTTCTT 57.656 40.909 0.00 0.00 0.00 2.52
1664 1777 4.616373 CGTACGCCTTCTTCTTCTTCTTCT 60.616 45.833 0.52 0.00 0.00 2.85
1665 1778 3.608939 CGTACGCCTTCTTCTTCTTCTTC 59.391 47.826 0.52 0.00 0.00 2.87
1666 1779 3.576648 CGTACGCCTTCTTCTTCTTCTT 58.423 45.455 0.52 0.00 0.00 2.52
1667 1780 2.671632 GCGTACGCCTTCTTCTTCTTCT 60.672 50.000 29.51 0.00 34.56 2.85
1668 1781 1.654602 GCGTACGCCTTCTTCTTCTTC 59.345 52.381 29.51 0.00 34.56 2.87
1669 1782 1.000506 TGCGTACGCCTTCTTCTTCTT 59.999 47.619 35.11 0.00 41.09 2.52
1670 1783 0.601558 TGCGTACGCCTTCTTCTTCT 59.398 50.000 35.11 0.00 41.09 2.85
1671 1784 0.992802 CTGCGTACGCCTTCTTCTTC 59.007 55.000 35.11 6.52 41.09 2.87
1672 1785 1.014564 GCTGCGTACGCCTTCTTCTT 61.015 55.000 35.11 0.00 41.09 2.52
1673 1786 1.446272 GCTGCGTACGCCTTCTTCT 60.446 57.895 35.11 0.00 41.09 2.85
1674 1787 2.789203 CGCTGCGTACGCCTTCTTC 61.789 63.158 35.11 16.77 41.09 2.87
1675 1788 2.809601 CGCTGCGTACGCCTTCTT 60.810 61.111 35.11 0.00 41.09 2.52
1708 1839 3.479269 CGCCGCCAAGAGAACGAC 61.479 66.667 0.00 0.00 0.00 4.34
1767 1908 2.121786 CAAATGCATGCAATCTACCGC 58.878 47.619 26.68 0.00 0.00 5.68
1898 2040 0.371645 CGCCTGAATTTGACTCGCTC 59.628 55.000 0.00 0.00 0.00 5.03
1902 2044 0.960364 TGGCCGCCTGAATTTGACTC 60.960 55.000 11.61 0.00 0.00 3.36
1916 2058 1.210931 CTGCAGATTTGTGTGGCCG 59.789 57.895 8.42 0.00 0.00 6.13
1934 2076 6.658391 TCCTACTAGTAGTCTGTTTCAGAACC 59.342 42.308 24.84 0.00 42.46 3.62
1945 2087 2.289569 CCGGCGATCCTACTAGTAGTCT 60.290 54.545 24.84 13.64 0.00 3.24
1947 2089 1.696336 TCCGGCGATCCTACTAGTAGT 59.304 52.381 24.84 8.14 0.00 2.73
1948 2090 2.469274 TCCGGCGATCCTACTAGTAG 57.531 55.000 21.11 21.11 0.00 2.57
1949 2091 2.983229 GATCCGGCGATCCTACTAGTA 58.017 52.381 9.30 1.89 39.29 1.82
1950 2092 1.823797 GATCCGGCGATCCTACTAGT 58.176 55.000 9.30 0.00 39.29 2.57
1966 2108 2.514824 GTGGGAGCAAGCCGGATC 60.515 66.667 5.05 0.00 0.00 3.36
1967 2109 4.115199 GGTGGGAGCAAGCCGGAT 62.115 66.667 5.05 0.00 0.00 4.18
1970 2112 4.335647 ACAGGTGGGAGCAAGCCG 62.336 66.667 0.00 0.00 0.00 5.52
1971 2113 2.360475 GACAGGTGGGAGCAAGCC 60.360 66.667 0.00 0.00 0.00 4.35
1972 2114 0.538287 AAAGACAGGTGGGAGCAAGC 60.538 55.000 0.00 0.00 0.00 4.01
1973 2115 1.986882 AAAAGACAGGTGGGAGCAAG 58.013 50.000 0.00 0.00 0.00 4.01
1974 2116 2.452600 AAAAAGACAGGTGGGAGCAA 57.547 45.000 0.00 0.00 0.00 3.91
2001 2143 9.929180 CGGGAGAGATGATTACATTATAAAGAA 57.071 33.333 0.00 0.00 36.82 2.52
2002 2144 8.035394 GCGGGAGAGATGATTACATTATAAAGA 58.965 37.037 0.00 0.00 36.82 2.52
2003 2145 8.037758 AGCGGGAGAGATGATTACATTATAAAG 58.962 37.037 0.00 0.00 36.82 1.85
2004 2146 7.819415 CAGCGGGAGAGATGATTACATTATAAA 59.181 37.037 0.00 0.00 36.82 1.40
2005 2147 7.178451 TCAGCGGGAGAGATGATTACATTATAA 59.822 37.037 0.00 0.00 36.82 0.98
2006 2148 6.663523 TCAGCGGGAGAGATGATTACATTATA 59.336 38.462 0.00 0.00 36.82 0.98
2007 2149 5.481824 TCAGCGGGAGAGATGATTACATTAT 59.518 40.000 0.00 0.00 36.82 1.28
2008 2150 4.832823 TCAGCGGGAGAGATGATTACATTA 59.167 41.667 0.00 0.00 36.82 1.90
2009 2151 3.643320 TCAGCGGGAGAGATGATTACATT 59.357 43.478 0.00 0.00 36.82 2.71
2010 2152 3.234353 TCAGCGGGAGAGATGATTACAT 58.766 45.455 0.00 0.00 39.67 2.29
2011 2153 2.666317 TCAGCGGGAGAGATGATTACA 58.334 47.619 0.00 0.00 0.00 2.41
2012 2154 3.951775 ATCAGCGGGAGAGATGATTAC 57.048 47.619 0.00 0.00 0.00 1.89
2013 2155 4.963318 AAATCAGCGGGAGAGATGATTA 57.037 40.909 10.25 0.00 40.54 1.75
2014 2156 3.853355 AAATCAGCGGGAGAGATGATT 57.147 42.857 4.85 4.85 42.61 2.57
2015 2157 3.853355 AAAATCAGCGGGAGAGATGAT 57.147 42.857 0.00 0.00 33.91 2.45
2016 2158 4.697514 CTTAAAATCAGCGGGAGAGATGA 58.302 43.478 0.00 0.00 0.00 2.92
2017 2159 3.249559 GCTTAAAATCAGCGGGAGAGATG 59.750 47.826 0.00 0.00 0.00 2.90
2018 2160 3.471680 GCTTAAAATCAGCGGGAGAGAT 58.528 45.455 0.00 0.00 0.00 2.75
2019 2161 2.906354 GCTTAAAATCAGCGGGAGAGA 58.094 47.619 0.00 0.00 0.00 3.10
2027 2169 0.455815 CCCACCCGCTTAAAATCAGC 59.544 55.000 0.00 0.00 0.00 4.26
2028 2170 2.122783 TCCCACCCGCTTAAAATCAG 57.877 50.000 0.00 0.00 0.00 2.90
2029 2171 2.164338 GTTCCCACCCGCTTAAAATCA 58.836 47.619 0.00 0.00 0.00 2.57
2030 2172 1.131693 CGTTCCCACCCGCTTAAAATC 59.868 52.381 0.00 0.00 0.00 2.17
2031 2173 1.170442 CGTTCCCACCCGCTTAAAAT 58.830 50.000 0.00 0.00 0.00 1.82
2032 2174 0.108207 TCGTTCCCACCCGCTTAAAA 59.892 50.000 0.00 0.00 0.00 1.52
2033 2175 0.108207 TTCGTTCCCACCCGCTTAAA 59.892 50.000 0.00 0.00 0.00 1.52
2034 2176 0.603439 GTTCGTTCCCACCCGCTTAA 60.603 55.000 0.00 0.00 0.00 1.85
2035 2177 1.004679 GTTCGTTCCCACCCGCTTA 60.005 57.895 0.00 0.00 0.00 3.09
2036 2178 2.281276 GTTCGTTCCCACCCGCTT 60.281 61.111 0.00 0.00 0.00 4.68
2037 2179 4.324991 GGTTCGTTCCCACCCGCT 62.325 66.667 0.00 0.00 0.00 5.52
2038 2180 2.453379 TAAGGTTCGTTCCCACCCGC 62.453 60.000 0.00 0.00 32.92 6.13
2039 2181 0.251073 ATAAGGTTCGTTCCCACCCG 59.749 55.000 0.00 0.00 32.92 5.28
2040 2182 2.502142 AATAAGGTTCGTTCCCACCC 57.498 50.000 0.00 0.00 32.92 4.61
2041 2183 3.570975 ACAAAATAAGGTTCGTTCCCACC 59.429 43.478 0.00 0.00 0.00 4.61
2042 2184 4.841443 ACAAAATAAGGTTCGTTCCCAC 57.159 40.909 0.00 0.00 0.00 4.61
2043 2185 5.127356 ACAAACAAAATAAGGTTCGTTCCCA 59.873 36.000 0.00 0.00 0.00 4.37
2044 2186 5.593968 ACAAACAAAATAAGGTTCGTTCCC 58.406 37.500 0.00 0.00 0.00 3.97
2045 2187 7.701501 TGTAACAAACAAAATAAGGTTCGTTCC 59.298 33.333 0.00 0.00 34.29 3.62
2046 2188 8.617761 TGTAACAAACAAAATAAGGTTCGTTC 57.382 30.769 0.00 0.00 34.29 3.95
2047 2189 8.983307 TTGTAACAAACAAAATAAGGTTCGTT 57.017 26.923 0.00 0.00 45.11 3.85
2061 2203 9.299963 CTTGACTTGATTTGATTGTAACAAACA 57.700 29.630 0.00 0.00 39.48 2.83
2062 2204 9.301153 ACTTGACTTGATTTGATTGTAACAAAC 57.699 29.630 0.00 0.00 39.48 2.93
2069 2211 8.950210 CCTACATACTTGACTTGATTTGATTGT 58.050 33.333 0.00 0.00 0.00 2.71
2070 2212 9.166173 TCCTACATACTTGACTTGATTTGATTG 57.834 33.333 0.00 0.00 0.00 2.67
2071 2213 9.388506 CTCCTACATACTTGACTTGATTTGATT 57.611 33.333 0.00 0.00 0.00 2.57
2072 2214 7.497249 GCTCCTACATACTTGACTTGATTTGAT 59.503 37.037 0.00 0.00 0.00 2.57
2073 2215 6.818644 GCTCCTACATACTTGACTTGATTTGA 59.181 38.462 0.00 0.00 0.00 2.69
2074 2216 6.595326 TGCTCCTACATACTTGACTTGATTTG 59.405 38.462 0.00 0.00 0.00 2.32
2075 2217 6.595716 GTGCTCCTACATACTTGACTTGATTT 59.404 38.462 0.00 0.00 0.00 2.17
2076 2218 6.109359 GTGCTCCTACATACTTGACTTGATT 58.891 40.000 0.00 0.00 0.00 2.57
2077 2219 5.665459 GTGCTCCTACATACTTGACTTGAT 58.335 41.667 0.00 0.00 0.00 2.57
2078 2220 4.380550 CGTGCTCCTACATACTTGACTTGA 60.381 45.833 0.00 0.00 0.00 3.02
2079 2221 3.859961 CGTGCTCCTACATACTTGACTTG 59.140 47.826 0.00 0.00 0.00 3.16
2080 2222 3.762288 TCGTGCTCCTACATACTTGACTT 59.238 43.478 0.00 0.00 0.00 3.01
2081 2223 3.353557 TCGTGCTCCTACATACTTGACT 58.646 45.455 0.00 0.00 0.00 3.41
2082 2224 3.777465 TCGTGCTCCTACATACTTGAC 57.223 47.619 0.00 0.00 0.00 3.18
2083 2225 4.441495 CCATTCGTGCTCCTACATACTTGA 60.441 45.833 0.00 0.00 0.00 3.02
2084 2226 3.804325 CCATTCGTGCTCCTACATACTTG 59.196 47.826 0.00 0.00 0.00 3.16
2085 2227 3.181465 CCCATTCGTGCTCCTACATACTT 60.181 47.826 0.00 0.00 0.00 2.24
2086 2228 2.365617 CCCATTCGTGCTCCTACATACT 59.634 50.000 0.00 0.00 0.00 2.12
2087 2229 2.364324 TCCCATTCGTGCTCCTACATAC 59.636 50.000 0.00 0.00 0.00 2.39
2088 2230 2.628178 CTCCCATTCGTGCTCCTACATA 59.372 50.000 0.00 0.00 0.00 2.29
2089 2231 1.414181 CTCCCATTCGTGCTCCTACAT 59.586 52.381 0.00 0.00 0.00 2.29
2090 2232 0.824109 CTCCCATTCGTGCTCCTACA 59.176 55.000 0.00 0.00 0.00 2.74
2091 2233 0.530870 GCTCCCATTCGTGCTCCTAC 60.531 60.000 0.00 0.00 0.00 3.18
2092 2234 0.975556 TGCTCCCATTCGTGCTCCTA 60.976 55.000 0.00 0.00 0.00 2.94
2093 2235 1.630126 ATGCTCCCATTCGTGCTCCT 61.630 55.000 0.00 0.00 0.00 3.69
2094 2236 1.153086 ATGCTCCCATTCGTGCTCC 60.153 57.895 0.00 0.00 0.00 4.70
2095 2237 2.020131 CATGCTCCCATTCGTGCTC 58.980 57.895 0.00 0.00 0.00 4.26
2096 2238 2.117156 GCATGCTCCCATTCGTGCT 61.117 57.895 11.37 0.00 40.87 4.40
2097 2239 1.936436 TTGCATGCTCCCATTCGTGC 61.936 55.000 20.33 0.00 43.48 5.34
2098 2240 0.099968 CTTGCATGCTCCCATTCGTG 59.900 55.000 20.33 0.00 0.00 4.35
2099 2241 0.322816 ACTTGCATGCTCCCATTCGT 60.323 50.000 20.33 1.49 0.00 3.85
2100 2242 0.379669 GACTTGCATGCTCCCATTCG 59.620 55.000 20.33 0.88 0.00 3.34
2101 2243 1.674962 GAGACTTGCATGCTCCCATTC 59.325 52.381 20.33 6.71 0.00 2.67
2102 2244 1.760192 GAGACTTGCATGCTCCCATT 58.240 50.000 20.33 0.00 0.00 3.16
2103 2245 0.463295 CGAGACTTGCATGCTCCCAT 60.463 55.000 20.33 1.85 0.00 4.00
2104 2246 1.078918 CGAGACTTGCATGCTCCCA 60.079 57.895 20.33 0.00 0.00 4.37
2105 2247 1.078848 ACGAGACTTGCATGCTCCC 60.079 57.895 20.33 5.58 0.00 4.30
2106 2248 0.108424 AGACGAGACTTGCATGCTCC 60.108 55.000 20.33 5.23 0.00 4.70
2107 2249 2.458951 CTAGACGAGACTTGCATGCTC 58.541 52.381 20.33 8.36 0.00 4.26
2108 2250 1.135915 CCTAGACGAGACTTGCATGCT 59.864 52.381 20.33 0.00 0.00 3.79
2109 2251 1.135139 TCCTAGACGAGACTTGCATGC 59.865 52.381 11.82 11.82 0.00 4.06
2110 2252 3.637432 GATCCTAGACGAGACTTGCATG 58.363 50.000 0.00 0.00 0.00 4.06
2111 2253 2.292016 CGATCCTAGACGAGACTTGCAT 59.708 50.000 0.00 0.00 0.00 3.96
2112 2254 1.671328 CGATCCTAGACGAGACTTGCA 59.329 52.381 0.00 0.00 0.00 4.08
2113 2255 1.671845 ACGATCCTAGACGAGACTTGC 59.328 52.381 9.96 0.00 0.00 4.01
2114 2256 4.553156 GCTTACGATCCTAGACGAGACTTG 60.553 50.000 9.96 0.00 0.00 3.16
2115 2257 3.560896 GCTTACGATCCTAGACGAGACTT 59.439 47.826 9.96 0.00 0.00 3.01
2116 2258 3.132925 GCTTACGATCCTAGACGAGACT 58.867 50.000 9.96 0.00 0.00 3.24
2117 2259 2.871022 TGCTTACGATCCTAGACGAGAC 59.129 50.000 9.96 0.00 0.00 3.36
2118 2260 3.132160 CTGCTTACGATCCTAGACGAGA 58.868 50.000 9.96 0.00 0.00 4.04
2119 2261 3.059461 GTCTGCTTACGATCCTAGACGAG 60.059 52.174 9.96 1.51 0.00 4.18
2120 2262 2.871022 GTCTGCTTACGATCCTAGACGA 59.129 50.000 9.96 0.00 0.00 4.20
2121 2263 2.873472 AGTCTGCTTACGATCCTAGACG 59.127 50.000 0.00 0.00 39.47 4.18
2122 2264 4.498345 CCAAGTCTGCTTACGATCCTAGAC 60.498 50.000 0.00 0.00 35.88 2.59
2123 2265 3.632604 CCAAGTCTGCTTACGATCCTAGA 59.367 47.826 0.00 0.00 32.87 2.43
2124 2266 3.381908 ACCAAGTCTGCTTACGATCCTAG 59.618 47.826 0.00 0.00 32.87 3.02
2125 2267 3.362706 ACCAAGTCTGCTTACGATCCTA 58.637 45.455 0.00 0.00 32.87 2.94
2126 2268 2.180276 ACCAAGTCTGCTTACGATCCT 58.820 47.619 0.00 0.00 32.87 3.24
2127 2269 2.674796 ACCAAGTCTGCTTACGATCC 57.325 50.000 0.00 0.00 32.87 3.36
2128 2270 4.025647 GCAATACCAAGTCTGCTTACGATC 60.026 45.833 0.00 0.00 32.87 3.69
2129 2271 3.871594 GCAATACCAAGTCTGCTTACGAT 59.128 43.478 0.00 0.00 32.87 3.73
2130 2272 3.056107 AGCAATACCAAGTCTGCTTACGA 60.056 43.478 0.00 0.00 42.37 3.43
2131 2273 3.262420 AGCAATACCAAGTCTGCTTACG 58.738 45.455 0.00 0.00 42.37 3.18
2132 2274 4.271291 GCTAGCAATACCAAGTCTGCTTAC 59.729 45.833 10.63 0.99 42.37 2.34
2133 2275 4.081142 TGCTAGCAATACCAAGTCTGCTTA 60.081 41.667 16.84 0.00 42.37 3.09
2134 2276 3.274288 GCTAGCAATACCAAGTCTGCTT 58.726 45.455 10.63 0.00 42.37 3.91
2135 2277 2.237143 TGCTAGCAATACCAAGTCTGCT 59.763 45.455 16.84 8.69 46.50 4.24
2136 2278 2.632377 TGCTAGCAATACCAAGTCTGC 58.368 47.619 16.84 0.00 34.96 4.26
2139 2281 5.818136 TGAAATGCTAGCAATACCAAGTC 57.182 39.130 23.54 7.22 0.00 3.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.