>input_sequence_86697
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----------------------------------------------------------------------------ATGC
AGAGCAGTGACTTGAAGTGGTTCCTGGCGAGCGAGTCCCCGACGAAGGCGATGGACTTGCCCCTCATGGCCTCCAAGAAC
CGCCCGGCATCGAAGCGGGGGAGGTCGCAGCCGTCAGGCTTCCACCGCCAGCGC---ATGAGGTCGAGACCGCCCGGCTT
GCCGAACTTCATGCAGTTCTGGAGGTCGTCGATGAACGGGCACGTCAGGTTGGTGTAG----------------------
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>chr6A_1_TraesCS6A01G164500
CCGGCCGCAGCTCCATCGCCTCCGTGATGTCCAGCAACCGCAGCTCCGCTCCGCTCCGGTTCCGCCGCCGTGCCGCCTCC
GTCTCCCTCAGCGCGTCAACCTGCGCACGCACAGCCCAAAGACAAACCAT---CAGAGATCAGACTGCGTCACCAGCCAC
TCGCGTCACGTCTCCGCGCGCGTTTGCAGCCAACTTTCTTGTTGCTGCGTCGAGAAAGAGAGAGGGGCATGCGTATGGGG
CTGCATGCATTGCATGGTCTCCGTTTCCCACCTGCGCGGCGCGGAACTCGGCCACGACAGCGTCGCGGGCGCGCTCGCCG
CGGCGGAGCGGCCGCGTGCGCACGCAGTCGCCGCCGGTGTTCCACTCCCCGTTCTCGAAGTGCGCGGGCGTGACCGTCCG
GACCACGGCCTTGCCGCGGAACCCCTCTCGGGCCG------CGATGGCGCCGAGCGCCGTGCGGAACGCGGCGCGCACCG
CGCCGGAGACGGGCGCCTCCGTCGCGTT------GTGGGCGCCGCTGGCGCCGTCGTTGCGCCCGACGGCCCGGCCGCCC
TCGTAGTACACCGAGGGGCGGAAGAACCAGTTGGTGCCGGACAGGACGATGTGGTCGAAGTCGGCGATGTGCGCCGCCCA
CCGGGCGTCCGCCGTGTCGAGGTGCACGTCCCACAGGCCCAGGCCGAGCGCCGCGCTGGAGAGGTTGGCTTTGACCAGGA
ATGGCGACCAGAAGAGCGAGACGTTGAAGCCGTGGCTGCCGTAGTGGAAGTCTCGGCGGACGGCCCTCCCCGTCACGTCC
GTCTCCGTCGTGGTGACGAGCTCCACCGGCTCTGCCACCTGCAACATGTTCAAACGCCGGTTGCATCAGCAGCTAGCGGC
--TAGAAGTGGACGACCGGCG-TGCCATGCATGAGTCGGGGACATGCTATTCCCGTGACCTCGA---CTCGAGTTGCCAA
GAGCAATGGGTTGTTTGTCCAACTGAGC------AGATCTGCCGTGTACGC---------ACGCACCTGCGACAGGATGC
AGAGCAGTGACTTGAAGTGGTTCCTGGCGAGCGAGTCCCCGACGAAGGCGATGGACTTGCCCCTCATGGCCTCCAAGAAC
CGCCCGGCATCGAAGCGGGGGAGGTCGCAGCCGTCAGGCTTCCACCGCCAGCGC---ATGAGGTCGAGACCGCCCGGCTT
GCCGAACTTCATGCAGTTCTGGAGGTCGTCGATGAACGGGCACGTCAGGTTGGTGTAGTACGGCGGCT---CGTCGTCCG
GCACCCACTGGCCCCGCGTCAGGTCGCAGGCCTCGACGGCGGTGGCTGGAGACGCCGCCGACGTA------------GAC
GATGACGACGA---GGAGGAGTTG---------GCCGGCGAAGTTGACGATGATACG---GTAGCCGGAGCCGTGGGCGA
CGAGGAGGTGGTGGCAGGGCCAGGAGATGCAGAGGATGAA---GAGGAGGCGCGGCGTATGTTGTGGTAAGTT---TCGG
CCAAGTTGAAGTCGTAGAGCGAGACGACGGCGAGGGCCAGCAGGAGGAGGATCGGCGTGGCAACGGCGACGGAGACCTTC
CGCGAGAAGGGGCTGCTCTTGTGGGGCTTCATCGTCGAGGGGCGTTGGCGTACGCGATCGAGATGAGGAGTTGAGGAAGG
TGACGGGCAGAGTCGCATGTG-------------------------------------GAAGAAGAAGAAGAAGAAGAAG
AAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGGCGTACGCAGCGCGTGT------------------GGCGTAATTAGT
CGTTCTCTTGGCGGCGGCCGGCGGGGGTCA----------AAGCCGTTTCTCCTTTAGCGACGGACCGC-GGTAGATTGC
ATGCATTTGCCTCGTTCCATAGTTTAAGACTCTCTCTGACGAAGCATTCTCCTGGGCACGTCACCCCGTGCCTTCTTTCT
GAATTCTGGTGGTTGTGGCATTCTGACGATGCACGTCGCGAGCGAGTCAAATTCAGGCGGCCACACAAATCTGCAGGTTC
TGAAACAGACTACTAGTAGGATCGCCGGATCCGGCTTGCTCCCACCTGTCTTTTTTCCTTTTTTCTTTATAATGTAATCA
TCTCTCCCGCTGATTTTAAGCGGGTGGGAACGAACCTTATTTTGTTTGTTACAATCAAATCAAGTCAAGTATGTAGGAGC
ACGAATGGGAGCATGCAAGTCTCGTCTAGGATCGTAAGCAGACTTGGTATTGCTAGCAT------TTCAAAACAGATCGT
AAGCAGGACGCTATCCGGAAAGGAAAAATGGACGTCAGCTGATGAT
>chr6B_1
CCGGCCGCAGCTCCATCGCCTCCGTGATGTCCAGCAGCCGCAGCTCCGCGCCGCTCCGGTTCCGCTGCGTCGCCGCCTCC
GTCTCTCTCAGCGCGTCAACCTGCGCACGCACACCCCAAAGGCAAACCATCAGCAGAC----------------------
-CGCGTCACGTCTCCGCG----TTTGCAACCAATTTTCTTGTTGCCGCGTCGAGAAAGAGAG-GGGGCATGCGTATGGGG
CTGCATGCAT-----GGTTTCCGTTTCCCACCTGCGCGGCGCGGAACTCGGCCACGACGGCGTCGCGGGCGCGCTCGCCG
CGGCGGAGCGGCCGCGTGCGCACGCAGTCGCCGCCGGTGTTCCACTCCCCGTTCTCGAAGTGCGCGGGCGTGACCGTCCG
GACCACGGCCTTGCCCCGGAACCCCTCGCGGGCCA------TGATGGCGCCGAGCGCCGTGCGGAACGCGGCGCGCACCG
CGCCGGAGACGGGCGTCTCCGTCGCGTT------GTGGATGCCGCTGGCGCCGCCGTTGCGCCCGACGGCCCGGCCGCCC
GCGTAGTACACCGAGGGGCGGAAGAACCAGTTGGTGCCGGACAGGACGATGTAGTCGAAGTCGGCGATGTGCGCCGCCCA
CCGGGCGTCCGCGGTGTCGAGGTGCACGTCCCACAGGCCCAGGCCGAGCGCCGCGTTCGAGAGGTTGGCCTTGACCAGGA
AGGGCGACCAGAAGAGCGAGACGTTGAAGCCGTGGCTGCCGTAGTGGAAGTCTCGCCGGACGGCCCTCCTCGTCACGTCC
GTCTCCGTCGCGGTGACCAGCTCCACCGGCTCTGCCACCTGCAACATGTTCATACGCC--TTGCATCAGCAGCTATCGGA
--TAGAAGTGGACGATCGGCG-TGCCATGCATGAGTCGCGGACATGCTATTCCCGTCATCCCGTGCCCTCGAGTTGCCAA
GGGTAATGGGTTGTTGTCCAACCGAGGCAACATGAGATGTGCCGTGT-------------ACGCACCTGCGACAGGATGC
AAAGCAGAGACTTGACGTGGTTCCTGGCGAGCGAGTCCCCGACGAAGGCCATGGACCTGCCCCTCATGGCCTCCAAGAAC
CGCCCGGCGTCGAAGCGGGGGAGGTCGCAGCCGTCAGGCTTCCACCGCCAGCGC---ATGAGGTCCAG---GCCCGGCTT
GCCGAACTTCATGCAGTTCTGGAGGTCGTCGATGAACGGGCACGTCAGGTTGGTGTAGTACGATGGCT---CGTCGTCCG
GCACCCATTGGCCCCGCGTAAGATCGCATGCTTCGAGGGCCGTGGCCGGAGACGCCGACGAGGAGTAGTTGACCAGGGAC
GCCGAAGACGA---GGAGGAGTTGGCCGGAGACGCCGGCGAAGTTGACGATGGTAC---TGTCGCCGGAACCGTGGGAGA
CGAGGGGGTGGTGGCAGGG------GACGCAAAGGATGAA---GAGGAGGCGCGGCGTATGTACTGGTACCTT---TCGG
CGAAGTTGAAGTCGTAGAGCGAGACGACGGCGAGGGCCAGCAGGAGGAGGGTCGGCGTGGCAACGGCGACGGAGACCTTC
CGCGAGAAGGGGCTGCTCTTGTGGGGTTTCATGGTCGAGGGGCGTTGGCGTGCGCGCTCGAGATCAGGAGTTGAGGAAGG
TGACGGGCAGAGCCGCATGTG-------------------------------------GAAGAAGAAGAAGAAGAAGAAG
GAGAAGAATGCGCGCC-----------------GCGCACGCAGCGCGTGTCGTGTTCTTGAGGTAGCTGGCGTAATTACT
CGTTCTCTTGGCGGCGGCCGGCGGGGGTCA----------AAGCCGTTTCTCCTTTGGCGACGGACCAC-GGTAGATTGC
ATGCATTTGCCTCGTTCCATAGTTCAAGACTCTCTCCGACGAAGCATTCTCCTGGGCACGTCACCCCGTGCCTTCTTTCT
GAATTCTGGTGGTTGCGGCATTCTGACGAAGCACGTCGCAAGCAAGTCAAATTCAGGTGGCCACACAAATCTGCATGTTC
TGAAACCG------AGTAGGATCGCCGCGGAATCAAAGAGCC--------------------------------------
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--------------------------------------CAAACTTGGTATTGCTAGCATTTTCGTTTCAAAACAGATCGT
AAGCAGGACGCTATCCGGAAAGGAAACGTCGACGTCACCTGATGAT
>chr6D_1
CCGGCCGCAGCTCCATCGCCTCTGTGATGTCCAGCAGCCGCAGCTCCGCGCCGTTCCGGTTCCGCTGCGACGCAGCCTCC
GTCTCCCTGAGCGCGTCAACCTACGCACGCACAGCCAAAAGACAAACCAT---CAGAC----------------------
-CACATCACGTCTCCGCG----TTTGTAACCAATTTTCCAGTAGCCGCGTCGAGAGACAGAGAGGGGCCTGCGTATGGGG
CTGCATGCAT-----GGTTTCCGTCTCTCACCTGCGCGGCGCGGAACTCGGCCACCATGGCGTCGCGGGCGCGCTCGCCG
CGGCGGAACGGCCGCGTGCGGACGCAGTCGCCGCCGGAGTTCCACTCCCCGTTCTCGAAGTGCACGGGCGTGACCGTCCG
GACCACGGCCTTGCCGCGGAACCCCTCGCGGGCCGGGGCCGCGATGGCGCCGAGCGCTGTGCGGAACGCGGCGCGCACCG
CGCCGGAGACGGGCATCTCAGTCGCGTT------GTGGGCGCCACTGGCGCCGCCGTGGCGCCCGACGGCCCGGCCGCCC
TCGTAGTACACGCAGGGGCGGAAGAACCAGTAGGTGCCGGACAGGACGATGTAGTCAAAGTCGGCGATGTGCGCCGCCCA
CCGGGCATCCGGCGTGTCGAGGTGCACGTCCCACAGGCCCAGGCCGGGCGCCGCGTTGGAGAGGTTGGCCTTGACCAGGA
ACGGCGACCAGAAGAGCGAGACGTTGAAGCCGTGGCTGCCGTAGTGGAAGTCTCGCCGGACGGCCCTCCCCGTCACGTCG
GTCTCCGTCGTGGTGACGAGCTCCACCGGCTCTGCCACCTGCAACATGTTCAAACGCCAGTTGCATCAGCAGCTAGCAGC
--TAGAAGTGGATGGTTGGGGTTGCCATGCATGAGTCGCGGACATGCTATTCCCGTGCCAAGAGCAACGG----------
------------GTTGTCCAACCGAACAAACATGGGATGCAC--TGT-------------ACGCACCTGGGACAGGATGC
AGAGCAGAGACTTGACGTGGTTCCTGGCGAGCGAGTCCCCAACGAAGGCCATGGACTTGCCCCTCATGGCCTCCAGGAAC
CGCCCGGCGTCGAAGCGGGGGAGGTCGCAGTCGTGAGGCTTCCACCGCCAGCGCATGATGAGGTCGAG---GCCCGGCTT
GCCGAACTTCATGCAGTTCTGGAGGTCGTCGATGAACGAGCACGTCAGGTTGGTGTAGTAGGGCGGCT---CGTCGTCCG
GCACCCACTGGCCCCGCGTCAGGTCGCAGGCGTC----------------------------------------------
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>chr6D_1
CCGGACGCAGCTCCATCGCCCCCGTGATGTCCAGCAGCCGCAGCTCCGCGCCGCTCCGGTTCCGCCGCCATGCCGCCTCG
GTCTCCCTCAGCGCGTCAACCTGCGCACGCACAGCCCAAAGACGAACCAT---CAGCG----GACCGCGTCACCAGCCAC
TCGCGTCACGTCTCCGCG----TTTGCAACCAATTTTCTTGTTGCCGCGTCGAGAAAGAGAGAGGGGCATGCGTATGGCG
CTGCATGCAT-----GGTTTCCGTTTCCCACCTGCGCGGCGCGGAACTCGGCCACGACGGCGTCGCGGGCGCGCTCGCCG
CGGCGGAGCGGCCGCGTGCGCACGCAGTCGCCGCCGGTGTTCCACTCCCCGTTCTCGAAGTGCGCGGGCGTGACCGTCCG
GACCACGGCCTTGCCGCGGAACCCCTCGCGGGCCG------CGATGGCGCCGAGCGCCGTGCGGAACGCGGCGCGCACCG
CGCCGGAGACGGGCGTCTCGGTCGCGTT------GTGGGCGCCGCTGGCGCCGCCGTTGCGCCCGACGGCCCGGCCACCC
TCGTAGTACACCGAGGGGCGGAAGAACCAGTTGGTGCCGGACAGGACGATGTAGTCGAAGTCGGCGATGTGCGCCGCCCA
CCGGGCGTCCGGCGTGTCGAGGTGCACGTCCCACAGGCCCAGGCCGAACGCCGCGTTCGAGAGGTTGGCCTTGACCAGGA
AGGGCGACCAGAAGAGCGAGACGTTGAACCCGTGGCTGCCGTAGTGGAAGTCTCGCCGGACGGCCCTCCCCGTCACGTCC
GTCTCCGTCGTGGTGACGAGCTCCACCGGCTCTGGCACCTGCAACATGTTCAAACGCCAGTTGCATCAGCAGCTAGCAGC
TATAGAAGTGGACGATCGGCG-TGCCATGCATGATTCGCGGACATGCTATTCCCGTGCCATCGA---CTTGCCGA-----
---------------------------------GAGATGTGGCGTGT-------------ACGTACCTGGGACAGGATGC
AGAGCAGAGACTTGACGTGGTT-CTGGCGAGCGAATCCCCGACGAAGGCCATGGACTTGCCCCTCATGGCCTCCAAGAAC
CGCCCGGCGTCGAAGCGGGGAAGGTCGCAGCCGTCAGGCTTCCACCGCCAGCGCATGATG---TCGAGACCGCCCGGCTT
GCCGAACTTCATGCAGTTCTGGAGGTCGTCGATGAACGGGCACGTCAGGTTGGTGTAGTACGGCGGCT---CGTCGTCCG
GCACCCACTGGCCCCGCGTCAGGTCGCAGGCGCCAGTGGGC---------------------GAGGAGTTGGTCGGGGAC
GCCGAAGATGACGAGGAGGAGTTGGGCGGAGACGCCGACGACGATGACGATGGTAAGGTTGCCGCCGGGATCGTGGGAGA
CGCGGAGGTGGTCGCCGGAAACGACGGCGCCGACGATGAAGCGGAGGAGGCGCGGCGTATGTACTGGTAGTAACTGTCGG
CGAAGTTGAAATCGTAGAGCGAGACGACGGCGAGGGCTAGCAGGAGGAGGATCGGCGTGGCAACAGCAACGGAGATCTTG
CGCGAGAAGGGGTTGCTCTTGTGGGGCTTCATGGTCGAGAGGCGTAGGCGGACGCGATGGAGATCAGGAGTTGAGGAAGA
AGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAG
AAGAAGAATGCGCGCC-----------------GCGCACGCAGCGCGTGCCGTGTTCTTGAGCTAGATAGCGTAATTACT
CGTTCTCTTGGCGGCCGCCGGCGGGGGTCAAAGCCCGAGTAAGCCGTTTCTCCTTTGGCCACGGACCACGGGTAGACTGC
ATGCATTTGCCTCGTTCCATAGTTTAAGACTCTCTCTGACAAAGCATTCTCCTGGGCACGTCA-CCCGTGCCTTCTTTCT
GAATTCTGGTGGTTATAGCATTCTGACGGAGCACGTCACAAGCAAGTCAAATTCAGGTGGCCACAAAAATCTGCATGTTC
TGAAACCG------AGTAGGATCGCCGCGGAATCAAAGAGCC--------------------------------------
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--------------------------------------CAAACTTGGTATTGCTAGCAT------TTCAAAACAGATCGT
AAGCAGGTCGCTATCCGGAAAGGAAAAATCGACGTCAGCTGATGAT
>chr6A_267
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-----------------------------ACCTGCGCGCTGCGGTACTCGGACTCGAAGGCGCCCAGGGCGCGGTCGCCG
CGCCGGTAGGGCCGCGTGCGGACGCAGTCGCCGCCGGTGTTCCACTCGCCGCCCTCGAAGTGCGCGGGCGTCACCGTCCG
GAGCACCGCCTTGCCGCGGAACCCCTCACT------GGCGGCGACGGCGCCGAGCGCCGTCCGGAACGCCGCGCGCAGGG
CGCGGGGCACGGTCATCTCGGCCGTCACGTTCCCGTTGACGCAGCTCGCGCCGCCGTTGCACGCGACGGCGCGCCCGCCC
TCGTAGTACACCGAGGGGCGGAGGAACCAGTTGGTGCCCGAGAGGACGACGTGGTCGAAGCCGGCGAGGTGCGACGCCCA
CCGCGCGTCCGGCGTGTCCAGGTGCACGTCCCACATGCCGAGCGTG------GCGTTGGACAGGTTGGCCTTGACCAGGA
AGGGCGACCAGAAGAGGGAGGCGGTGAAGTCGTGGCTGCCGTAGTAGTAGTCCCGCCGGACGGCCCTCCCCGTCGGGTCG
ATCTCCGACTCACCCCCGACCTCCACCGGCTGCGCCACCTGCATGTCTCCACT---------------------------
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--------GGTTAGCTTCCATCAGAAACAACACGTTAATGGCCGAGTGCATGCACCACAGACGTACCCTGGACAGGAGGC
AGAGCAAGGACTTGAAGTGGTTCCTGGCGAGGGAGTCCCCGACGAAGGCCATGGACTTGCCCCTCATGGCCTCCAGGAAC
CGCGCGGCGTCGAAGCGGGGGAGCTCGCAGCCGTCCGGCCGCCACCTCCAGCGCAGGAAC---TCGAG---GCTCGGCTT
GCCGAACTTCATGCAGTTCTGGTGGTCGTCGATGAAGGGGCAAGTGAGGTTCGTGTAGTACGGCGCCTCCACGGCGTCCT
GCACCCACTCGCCCCGCGTGAGGTCGCAGGCC------------------------------------------------
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>SNPs
------------------------------------S------------S-------------------S----------
----------------------------------------------------------SSSS---S--------------
------------------SSSS------S----S-----------S----------------------------------
----------SSSSS---S---------------------------------------S---------------------
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---------------------------S----------------------------------------------------
---------------S-------------------------------------S--------------------------
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-------------------------------------------------------S-------------S----------
-S-----------------------------------------------------S------------------------
----------------------------------------------------------S---------------------
---------------S----------------------S-----------------------------------------
-S-S------------SS-S-S-SS-------------S--------S-SS-----------------------------
-------S-----------------------------------------S------------------------------
--------S-----------------------------------------------------------------------
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------------------------------------S---S-----S----------S---S-SS---------------
-SS--S----------------------------------------------S---------S------S-------S--
-------------------SSS-SS--S----------------------------------SS-----SS---------
-S------------------------------------------------------------------------------
--------------------------------S-------------------------------S---------------
------------S-------------------------------------------------------------------
--------SSS-SSSSSSSSSSSSSSSSSSSSS---S-----------------------------------------S-
--------------------------------------------------------S----------S------------
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-----------------------------S---------S---S-------------S-----------------S----
------S-SSSSSS-------------SSSSSSSSSS-SS--SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--S---------------------------------------
-----------------------------S----------------
>forward_252
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------------------------------------------------------------------------GTATGGGG
CTGCATGCATTG--------------------------------------------------------------------
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>reverse_1342
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-------------------------------------------------------------CGTAGACGATGACGACGAG
G-------------------------------------------------------------------------------
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