Multiple sequence alignment - TraesCS6A01G155800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G155800 chr6A 100.000 2623 0 0 1 2623 144529911 144527289 0.000000e+00 4844
1 TraesCS6A01G155800 chr6D 89.528 1165 68 32 617 1770 116345832 116344711 0.000000e+00 1426
2 TraesCS6A01G155800 chr6D 90.191 785 49 17 1857 2623 116344552 116343778 0.000000e+00 998
3 TraesCS6A01G155800 chr6B 93.462 933 49 10 738 1663 206021364 206020437 0.000000e+00 1375
4 TraesCS6A01G155800 chr6B 94.461 343 15 2 1928 2269 427533867 427534206 2.310000e-145 525
5 TraesCS6A01G155800 chr6B 94.461 343 15 2 1928 2269 441122677 441122338 2.310000e-145 525
6 TraesCS6A01G155800 chr6B 93.226 310 17 2 1961 2269 216123934 216124240 1.110000e-123 453
7 TraesCS6A01G155800 chr7B 95.602 432 14 3 1037 1464 63934961 63935391 0.000000e+00 688
8 TraesCS6A01G155800 chr4A 96.386 415 15 0 1051 1465 48275451 48275865 0.000000e+00 684
9 TraesCS6A01G155800 chr3D 95.755 424 17 1 1053 1476 368951439 368951017 0.000000e+00 682
10 TraesCS6A01G155800 chr3D 91.212 330 29 0 1 330 560364699 560365028 1.430000e-122 449
11 TraesCS6A01G155800 chr3B 95.519 424 18 1 1053 1476 479985968 479985546 0.000000e+00 676
12 TraesCS6A01G155800 chr3B 96.667 60 2 0 1927 1986 608903032 608903091 1.660000e-17 100
13 TraesCS6A01G155800 chr1A 95.498 422 18 1 1051 1471 468599197 468598776 0.000000e+00 673
14 TraesCS6A01G155800 chr1A 90.909 330 30 0 1 330 493924367 493924696 6.660000e-121 444
15 TraesCS6A01G155800 chr4D 94.664 431 22 1 1047 1477 415583728 415583299 0.000000e+00 667
16 TraesCS6A01G155800 chr3A 94.279 437 21 4 1053 1489 490337866 490337434 0.000000e+00 665
17 TraesCS6A01G155800 chr2B 94.186 344 16 2 1927 2269 698341535 698341875 2.990000e-144 521
18 TraesCS6A01G155800 chr5B 93.294 343 19 2 1928 2269 564050815 564050476 1.080000e-138 503
19 TraesCS6A01G155800 chr1D 91.291 333 28 1 1 333 474919722 474919391 1.110000e-123 453
20 TraesCS6A01G155800 chr1D 91.437 327 22 6 1 326 10211196 10210875 6.660000e-121 444
21 TraesCS6A01G155800 chr1D 91.104 326 24 4 1 326 415271198 415271518 1.110000e-118 436
22 TraesCS6A01G155800 chr2D 91.104 326 27 2 1 326 87235552 87235875 8.620000e-120 440
23 TraesCS6A01G155800 chr2D 91.104 326 27 1 1 326 102276971 102277294 8.620000e-120 440
24 TraesCS6A01G155800 chr2D 90.578 329 30 1 1 329 493170536 493170209 4.010000e-118 435
25 TraesCS6A01G155800 chr5A 90.390 333 31 1 1 333 118864086 118863755 1.110000e-118 436
26 TraesCS6A01G155800 chr4B 94.393 214 8 2 1937 2149 670127508 670127718 2.520000e-85 326


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G155800 chr6A 144527289 144529911 2622 True 4844 4844 100.0000 1 2623 1 chr6A.!!$R1 2622
1 TraesCS6A01G155800 chr6D 116343778 116345832 2054 True 1212 1426 89.8595 617 2623 2 chr6D.!!$R1 2006
2 TraesCS6A01G155800 chr6B 206020437 206021364 927 True 1375 1375 93.4620 738 1663 1 chr6B.!!$R1 925

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
315 316 0.032952 ACGTTTTGCGGAGTCTGCTA 59.967 50.0 24.05 14.68 46.52 3.49 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2092 2186 0.386838 AGCAAGCACAAACCAGAAGC 59.613 50.0 0.0 0.0 0.0 3.86 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.818714 CTGCCAGAGCCGCTTCTG 60.819 66.667 10.98 10.98 43.35 3.02
21 22 3.882025 CAGAGCCGCTTCTGGAAC 58.118 61.111 0.00 0.00 40.69 3.62
22 23 1.294780 CAGAGCCGCTTCTGGAACT 59.705 57.895 0.00 0.00 40.69 3.01
23 24 0.739112 CAGAGCCGCTTCTGGAACTC 60.739 60.000 0.00 0.00 40.69 3.01
24 25 1.448717 GAGCCGCTTCTGGAACTCC 60.449 63.158 0.00 0.00 0.00 3.85
25 26 2.172483 GAGCCGCTTCTGGAACTCCA 62.172 60.000 0.00 0.00 45.30 3.86
26 27 2.035442 GCCGCTTCTGGAACTCCAC 61.035 63.158 0.00 0.00 42.01 4.02
27 28 1.371183 CCGCTTCTGGAACTCCACA 59.629 57.895 0.00 0.00 42.01 4.17
28 29 0.036010 CCGCTTCTGGAACTCCACAT 60.036 55.000 0.00 0.00 42.01 3.21
29 30 1.611673 CCGCTTCTGGAACTCCACATT 60.612 52.381 0.00 0.00 42.01 2.71
30 31 1.734465 CGCTTCTGGAACTCCACATTC 59.266 52.381 0.00 0.00 42.01 2.67
31 32 1.734465 GCTTCTGGAACTCCACATTCG 59.266 52.381 0.00 0.00 42.01 3.34
32 33 1.734465 CTTCTGGAACTCCACATTCGC 59.266 52.381 0.00 0.00 42.01 4.70
33 34 0.036388 TCTGGAACTCCACATTCGCC 60.036 55.000 0.00 0.00 42.01 5.54
34 35 1.002624 TGGAACTCCACATTCGCCC 60.003 57.895 0.00 0.00 42.01 6.13
35 36 1.749258 GGAACTCCACATTCGCCCC 60.749 63.158 0.00 0.00 35.64 5.80
36 37 1.749258 GAACTCCACATTCGCCCCC 60.749 63.158 0.00 0.00 0.00 5.40
37 38 2.478335 GAACTCCACATTCGCCCCCA 62.478 60.000 0.00 0.00 0.00 4.96
38 39 2.438434 CTCCACATTCGCCCCCAC 60.438 66.667 0.00 0.00 0.00 4.61
39 40 3.253061 TCCACATTCGCCCCCACA 61.253 61.111 0.00 0.00 0.00 4.17
40 41 2.044053 CCACATTCGCCCCCACAT 60.044 61.111 0.00 0.00 0.00 3.21
41 42 2.417257 CCACATTCGCCCCCACATG 61.417 63.158 0.00 0.00 0.00 3.21
42 43 2.044053 ACATTCGCCCCCACATGG 60.044 61.111 0.00 0.00 0.00 3.66
43 44 3.530260 CATTCGCCCCCACATGGC 61.530 66.667 0.00 0.00 45.70 4.40
84 85 2.399611 GCCGACGGCGAGAAATTG 59.600 61.111 25.24 0.00 39.62 2.32
85 86 2.098233 GCCGACGGCGAGAAATTGA 61.098 57.895 25.24 0.00 39.62 2.57
86 87 1.999051 CCGACGGCGAGAAATTGAG 59.001 57.895 15.16 0.00 40.82 3.02
87 88 0.457853 CCGACGGCGAGAAATTGAGA 60.458 55.000 15.16 0.00 40.82 3.27
88 89 0.917259 CGACGGCGAGAAATTGAGAG 59.083 55.000 16.62 0.00 40.82 3.20
89 90 1.467543 CGACGGCGAGAAATTGAGAGA 60.468 52.381 16.62 0.00 40.82 3.10
90 91 2.189342 GACGGCGAGAAATTGAGAGAG 58.811 52.381 16.62 0.00 0.00 3.20
91 92 1.546476 ACGGCGAGAAATTGAGAGAGT 59.454 47.619 16.62 0.00 0.00 3.24
92 93 1.923204 CGGCGAGAAATTGAGAGAGTG 59.077 52.381 0.00 0.00 0.00 3.51
93 94 2.275318 GGCGAGAAATTGAGAGAGTGG 58.725 52.381 0.00 0.00 0.00 4.00
94 95 2.093973 GGCGAGAAATTGAGAGAGTGGA 60.094 50.000 0.00 0.00 0.00 4.02
95 96 3.589988 GCGAGAAATTGAGAGAGTGGAA 58.410 45.455 0.00 0.00 0.00 3.53
96 97 3.997021 GCGAGAAATTGAGAGAGTGGAAA 59.003 43.478 0.00 0.00 0.00 3.13
97 98 4.092675 GCGAGAAATTGAGAGAGTGGAAAG 59.907 45.833 0.00 0.00 0.00 2.62
98 99 4.629200 CGAGAAATTGAGAGAGTGGAAAGG 59.371 45.833 0.00 0.00 0.00 3.11
99 100 4.916183 AGAAATTGAGAGAGTGGAAAGGG 58.084 43.478 0.00 0.00 0.00 3.95
100 101 3.728385 AATTGAGAGAGTGGAAAGGGG 57.272 47.619 0.00 0.00 0.00 4.79
101 102 2.415983 TTGAGAGAGTGGAAAGGGGA 57.584 50.000 0.00 0.00 0.00 4.81
102 103 2.415983 TGAGAGAGTGGAAAGGGGAA 57.584 50.000 0.00 0.00 0.00 3.97
103 104 2.921221 TGAGAGAGTGGAAAGGGGAAT 58.079 47.619 0.00 0.00 0.00 3.01
104 105 2.840651 TGAGAGAGTGGAAAGGGGAATC 59.159 50.000 0.00 0.00 0.00 2.52
105 106 1.834263 AGAGAGTGGAAAGGGGAATCG 59.166 52.381 0.00 0.00 0.00 3.34
106 107 0.912486 AGAGTGGAAAGGGGAATCGG 59.088 55.000 0.00 0.00 0.00 4.18
107 108 0.909623 GAGTGGAAAGGGGAATCGGA 59.090 55.000 0.00 0.00 0.00 4.55
108 109 1.490910 GAGTGGAAAGGGGAATCGGAT 59.509 52.381 0.00 0.00 0.00 4.18
109 110 1.212935 AGTGGAAAGGGGAATCGGATG 59.787 52.381 0.00 0.00 0.00 3.51
110 111 0.550914 TGGAAAGGGGAATCGGATGG 59.449 55.000 0.00 0.00 0.00 3.51
111 112 0.823769 GGAAAGGGGAATCGGATGGC 60.824 60.000 0.00 0.00 0.00 4.40
112 113 0.183731 GAAAGGGGAATCGGATGGCT 59.816 55.000 0.00 0.00 0.00 4.75
113 114 0.183731 AAAGGGGAATCGGATGGCTC 59.816 55.000 0.00 0.00 0.00 4.70
114 115 0.988145 AAGGGGAATCGGATGGCTCA 60.988 55.000 0.00 0.00 0.00 4.26
115 116 1.227973 GGGGAATCGGATGGCTCAC 60.228 63.158 0.00 0.00 0.00 3.51
116 117 1.595382 GGGAATCGGATGGCTCACG 60.595 63.158 0.00 0.00 0.00 4.35
117 118 1.595382 GGAATCGGATGGCTCACGG 60.595 63.158 0.00 0.00 0.00 4.94
118 119 2.203070 AATCGGATGGCTCACGGC 60.203 61.111 0.00 0.00 40.90 5.68
119 120 4.592192 ATCGGATGGCTCACGGCG 62.592 66.667 4.80 4.80 42.94 6.46
132 133 4.742201 CGGCGGCGAGGGGATATG 62.742 72.222 29.19 0.00 0.00 1.78
133 134 4.394712 GGCGGCGAGGGGATATGG 62.395 72.222 12.98 0.00 0.00 2.74
134 135 3.626924 GCGGCGAGGGGATATGGT 61.627 66.667 12.98 0.00 0.00 3.55
135 136 3.148084 CGGCGAGGGGATATGGTT 58.852 61.111 0.00 0.00 0.00 3.67
136 137 1.450211 CGGCGAGGGGATATGGTTT 59.550 57.895 0.00 0.00 0.00 3.27
137 138 0.884704 CGGCGAGGGGATATGGTTTG 60.885 60.000 0.00 0.00 0.00 2.93
138 139 0.472471 GGCGAGGGGATATGGTTTGA 59.528 55.000 0.00 0.00 0.00 2.69
139 140 1.133915 GGCGAGGGGATATGGTTTGAA 60.134 52.381 0.00 0.00 0.00 2.69
140 141 1.947456 GCGAGGGGATATGGTTTGAAC 59.053 52.381 0.00 0.00 0.00 3.18
150 151 3.282557 GGTTTGAACCCGCAAAAGG 57.717 52.632 1.32 0.00 43.43 3.11
157 158 3.361977 CCCGCAAAAGGGTCGTGG 61.362 66.667 0.00 0.00 46.38 4.94
158 159 2.281208 CCGCAAAAGGGTCGTGGA 60.281 61.111 0.00 0.00 31.75 4.02
159 160 1.894756 CCGCAAAAGGGTCGTGGAA 60.895 57.895 0.00 0.00 31.75 3.53
160 161 1.281656 CGCAAAAGGGTCGTGGAAC 59.718 57.895 0.00 0.00 0.00 3.62
161 162 1.658114 GCAAAAGGGTCGTGGAACC 59.342 57.895 0.00 0.00 40.27 3.62
162 163 1.946267 CAAAAGGGTCGTGGAACCG 59.054 57.895 0.00 0.00 45.53 4.44
163 164 1.895231 AAAAGGGTCGTGGAACCGC 60.895 57.895 0.00 0.00 45.53 5.68
164 165 2.612095 AAAAGGGTCGTGGAACCGCA 62.612 55.000 5.27 0.00 45.53 5.69
165 166 3.819877 AAGGGTCGTGGAACCGCAC 62.820 63.158 5.27 2.69 45.53 5.34
166 167 4.309950 GGGTCGTGGAACCGCACT 62.310 66.667 5.27 0.00 40.46 4.40
167 168 2.280592 GGTCGTGGAACCGCACTT 60.281 61.111 5.27 0.00 0.00 3.16
168 169 1.005867 GGTCGTGGAACCGCACTTA 60.006 57.895 5.27 0.00 0.00 2.24
169 170 0.390735 GGTCGTGGAACCGCACTTAT 60.391 55.000 5.27 0.00 0.00 1.73
170 171 1.135024 GGTCGTGGAACCGCACTTATA 60.135 52.381 5.27 0.00 0.00 0.98
171 172 2.190981 GTCGTGGAACCGCACTTATAG 58.809 52.381 5.27 0.00 0.00 1.31
172 173 1.820519 TCGTGGAACCGCACTTATAGT 59.179 47.619 5.27 0.00 0.00 2.12
182 183 1.858091 CACTTATAGTGCTCAGGGCG 58.142 55.000 0.00 0.00 45.43 6.13
183 184 1.137086 CACTTATAGTGCTCAGGGCGT 59.863 52.381 0.00 0.00 45.43 5.68
184 185 1.137086 ACTTATAGTGCTCAGGGCGTG 59.863 52.381 0.00 0.00 45.43 5.34
185 186 0.179084 TTATAGTGCTCAGGGCGTGC 60.179 55.000 1.51 0.00 45.43 5.34
186 187 2.349969 TATAGTGCTCAGGGCGTGCG 62.350 60.000 1.51 0.00 45.43 5.34
191 192 3.726517 CTCAGGGCGTGCGGTTTG 61.727 66.667 1.51 0.00 0.00 2.93
209 210 4.054825 CGGGCTGCGGCAACATTT 62.055 61.111 21.31 0.00 40.87 2.32
210 211 2.343387 GGGCTGCGGCAACATTTT 59.657 55.556 21.31 0.00 40.87 1.82
211 212 1.301637 GGGCTGCGGCAACATTTTT 60.302 52.632 21.31 0.00 40.87 1.94
236 237 4.524318 CGGGCGAGTATGCGGGTT 62.524 66.667 0.00 0.00 35.06 4.11
237 238 2.588034 GGGCGAGTATGCGGGTTC 60.588 66.667 0.00 0.00 35.06 3.62
238 239 2.499685 GGCGAGTATGCGGGTTCT 59.500 61.111 0.00 0.00 35.06 3.01
239 240 1.883084 GGCGAGTATGCGGGTTCTG 60.883 63.158 0.00 0.00 35.06 3.02
240 241 1.153628 GCGAGTATGCGGGTTCTGT 60.154 57.895 0.00 0.00 0.00 3.41
241 242 0.739813 GCGAGTATGCGGGTTCTGTT 60.740 55.000 0.00 0.00 0.00 3.16
242 243 1.278238 CGAGTATGCGGGTTCTGTTC 58.722 55.000 0.00 0.00 0.00 3.18
243 244 1.135083 CGAGTATGCGGGTTCTGTTCT 60.135 52.381 0.00 0.00 0.00 3.01
244 245 2.271800 GAGTATGCGGGTTCTGTTCTG 58.728 52.381 0.00 0.00 0.00 3.02
245 246 1.066143 AGTATGCGGGTTCTGTTCTGG 60.066 52.381 0.00 0.00 0.00 3.86
246 247 0.392461 TATGCGGGTTCTGTTCTGGC 60.392 55.000 0.00 0.00 0.00 4.85
247 248 3.056328 GCGGGTTCTGTTCTGGCC 61.056 66.667 0.00 0.00 0.00 5.36
248 249 2.742372 CGGGTTCTGTTCTGGCCG 60.742 66.667 0.00 0.00 0.00 6.13
249 250 2.359975 GGGTTCTGTTCTGGCCGG 60.360 66.667 4.71 4.71 0.00 6.13
250 251 2.747686 GGTTCTGTTCTGGCCGGA 59.252 61.111 11.27 11.27 0.00 5.14
251 252 1.072505 GGTTCTGTTCTGGCCGGAA 59.927 57.895 23.60 23.60 0.00 4.30
252 253 0.536460 GGTTCTGTTCTGGCCGGAAA 60.536 55.000 28.65 16.90 0.00 3.13
253 254 1.314730 GTTCTGTTCTGGCCGGAAAA 58.685 50.000 28.65 22.57 0.00 2.29
254 255 1.886542 GTTCTGTTCTGGCCGGAAAAT 59.113 47.619 28.65 0.00 0.00 1.82
255 256 2.286365 TCTGTTCTGGCCGGAAAATT 57.714 45.000 28.65 0.00 0.00 1.82
256 257 1.885887 TCTGTTCTGGCCGGAAAATTG 59.114 47.619 28.65 17.36 0.00 2.32
257 258 0.965439 TGTTCTGGCCGGAAAATTGG 59.035 50.000 28.65 0.00 0.00 3.16
262 263 3.065567 GCCGGAAAATTGGCCCGA 61.066 61.111 5.05 0.00 45.73 5.14
263 264 2.641277 GCCGGAAAATTGGCCCGAA 61.641 57.895 5.05 0.00 45.73 4.30
264 265 1.214325 CCGGAAAATTGGCCCGAAC 59.786 57.895 0.00 0.00 45.58 3.95
265 266 1.214325 CGGAAAATTGGCCCGAACC 59.786 57.895 0.00 0.00 45.58 3.62
266 267 1.594833 GGAAAATTGGCCCGAACCC 59.405 57.895 0.00 0.00 0.00 4.11
267 268 1.214325 GAAAATTGGCCCGAACCCG 59.786 57.895 0.00 0.00 0.00 5.28
268 269 2.829043 GAAAATTGGCCCGAACCCGC 62.829 60.000 0.00 0.00 0.00 6.13
269 270 4.669809 AATTGGCCCGAACCCGCA 62.670 61.111 0.00 0.00 0.00 5.69
270 271 3.955543 AATTGGCCCGAACCCGCAT 62.956 57.895 0.00 0.00 0.00 4.73
271 272 2.559922 AATTGGCCCGAACCCGCATA 62.560 55.000 0.00 0.00 0.00 3.14
272 273 3.980442 TTGGCCCGAACCCGCATAC 62.980 63.158 0.00 0.00 0.00 2.39
273 274 4.171103 GGCCCGAACCCGCATACT 62.171 66.667 0.00 0.00 0.00 2.12
274 275 2.588034 GCCCGAACCCGCATACTC 60.588 66.667 0.00 0.00 0.00 2.59
275 276 2.279252 CCCGAACCCGCATACTCG 60.279 66.667 0.00 0.00 0.00 4.18
276 277 2.960129 CCGAACCCGCATACTCGC 60.960 66.667 0.00 0.00 0.00 5.03
277 278 2.960129 CGAACCCGCATACTCGCC 60.960 66.667 0.00 0.00 0.00 5.54
278 279 2.960129 GAACCCGCATACTCGCCG 60.960 66.667 0.00 0.00 0.00 6.46
279 280 4.524318 AACCCGCATACTCGCCGG 62.524 66.667 0.00 0.00 41.60 6.13
281 282 4.215742 CCCGCATACTCGCCGGAA 62.216 66.667 5.05 0.00 44.55 4.30
282 283 2.029073 CCGCATACTCGCCGGAAT 59.971 61.111 5.05 0.00 44.55 3.01
283 284 1.594293 CCGCATACTCGCCGGAATT 60.594 57.895 5.05 0.00 44.55 2.17
284 285 1.157870 CCGCATACTCGCCGGAATTT 61.158 55.000 5.05 0.00 44.55 1.82
285 286 0.655733 CGCATACTCGCCGGAATTTT 59.344 50.000 5.05 0.00 0.00 1.82
286 287 1.063469 CGCATACTCGCCGGAATTTTT 59.937 47.619 5.05 0.00 0.00 1.94
287 288 2.450160 GCATACTCGCCGGAATTTTTG 58.550 47.619 5.05 0.00 0.00 2.44
288 289 2.450160 CATACTCGCCGGAATTTTTGC 58.550 47.619 5.05 0.00 0.00 3.68
294 295 2.505997 CGGAATTTTTGCGGGCCG 60.506 61.111 24.35 24.35 41.03 6.13
295 296 2.125713 GGAATTTTTGCGGGCCGG 60.126 61.111 29.48 9.71 0.00 6.13
296 297 2.641277 GGAATTTTTGCGGGCCGGA 61.641 57.895 29.48 24.64 0.00 5.14
297 298 1.445410 GAATTTTTGCGGGCCGGAC 60.445 57.895 29.48 12.75 0.00 4.79
298 299 3.275832 AATTTTTGCGGGCCGGACG 62.276 57.895 29.48 10.66 0.00 4.79
310 311 2.851104 CGGACGTTTTGCGGAGTC 59.149 61.111 0.00 0.00 46.52 3.36
311 312 1.663702 CGGACGTTTTGCGGAGTCT 60.664 57.895 0.00 0.00 46.52 3.24
312 313 1.860078 GGACGTTTTGCGGAGTCTG 59.140 57.895 0.00 0.00 46.52 3.51
313 314 1.204312 GACGTTTTGCGGAGTCTGC 59.796 57.895 17.47 17.47 46.52 4.26
314 315 1.222115 GACGTTTTGCGGAGTCTGCT 61.222 55.000 24.05 3.03 46.52 4.24
315 316 0.032952 ACGTTTTGCGGAGTCTGCTA 59.967 50.000 24.05 14.68 46.52 3.49
316 317 0.716108 CGTTTTGCGGAGTCTGCTAG 59.284 55.000 24.05 7.71 36.85 3.42
317 318 1.668919 CGTTTTGCGGAGTCTGCTAGA 60.669 52.381 24.05 9.92 36.85 2.43
318 319 1.996191 GTTTTGCGGAGTCTGCTAGAG 59.004 52.381 24.05 0.00 0.00 2.43
319 320 1.257743 TTTGCGGAGTCTGCTAGAGT 58.742 50.000 24.05 0.00 0.00 3.24
320 321 1.257743 TTGCGGAGTCTGCTAGAGTT 58.742 50.000 24.05 0.00 0.00 3.01
321 322 0.528017 TGCGGAGTCTGCTAGAGTTG 59.472 55.000 24.05 0.00 0.00 3.16
322 323 0.804156 GCGGAGTCTGCTAGAGTTGC 60.804 60.000 17.05 0.00 0.00 4.17
323 324 0.814457 CGGAGTCTGCTAGAGTTGCT 59.186 55.000 0.00 0.00 0.00 3.91
324 325 1.202245 CGGAGTCTGCTAGAGTTGCTC 60.202 57.143 0.00 0.00 0.00 4.26
325 326 2.099405 GGAGTCTGCTAGAGTTGCTCT 58.901 52.381 4.02 4.02 43.83 4.09
326 327 2.159254 GGAGTCTGCTAGAGTTGCTCTG 60.159 54.545 8.75 1.26 41.37 3.35
327 328 2.752354 GAGTCTGCTAGAGTTGCTCTGA 59.248 50.000 8.75 0.00 41.37 3.27
328 329 2.754552 AGTCTGCTAGAGTTGCTCTGAG 59.245 50.000 8.75 0.00 41.37 3.35
329 330 1.476085 TCTGCTAGAGTTGCTCTGAGC 59.524 52.381 22.38 22.38 41.37 4.26
330 331 0.172127 TGCTAGAGTTGCTCTGAGCG 59.828 55.000 23.35 9.31 46.26 5.03
331 332 0.527385 GCTAGAGTTGCTCTGAGCGG 60.527 60.000 23.35 9.09 46.26 5.52
332 333 1.098869 CTAGAGTTGCTCTGAGCGGA 58.901 55.000 23.35 12.66 46.26 5.54
333 334 0.811915 TAGAGTTGCTCTGAGCGGAC 59.188 55.000 23.35 22.21 46.26 4.79
334 335 1.446966 GAGTTGCTCTGAGCGGACC 60.447 63.158 23.35 14.12 46.26 4.46
335 336 2.159819 GAGTTGCTCTGAGCGGACCA 62.160 60.000 23.35 3.84 46.26 4.02
336 337 1.301716 GTTGCTCTGAGCGGACCAA 60.302 57.895 23.35 9.91 46.26 3.67
337 338 1.301716 TTGCTCTGAGCGGACCAAC 60.302 57.895 23.35 0.00 46.26 3.77
338 339 2.811317 GCTCTGAGCGGACCAACG 60.811 66.667 14.68 0.00 0.00 4.10
339 340 2.651361 CTCTGAGCGGACCAACGT 59.349 61.111 0.00 0.00 35.98 3.99
340 341 1.880894 CTCTGAGCGGACCAACGTA 59.119 57.895 0.00 0.00 35.98 3.57
341 342 0.456312 CTCTGAGCGGACCAACGTAC 60.456 60.000 0.00 0.00 35.98 3.67
342 343 1.445582 CTGAGCGGACCAACGTACC 60.446 63.158 0.00 0.00 35.98 3.34
343 344 2.125793 GAGCGGACCAACGTACCC 60.126 66.667 0.00 0.00 35.98 3.69
344 345 3.654173 GAGCGGACCAACGTACCCC 62.654 68.421 0.00 0.00 35.98 4.95
345 346 4.765449 GCGGACCAACGTACCCCC 62.765 72.222 0.00 0.00 35.98 5.40
346 347 3.312718 CGGACCAACGTACCCCCA 61.313 66.667 0.00 0.00 0.00 4.96
347 348 2.348620 GGACCAACGTACCCCCAC 59.651 66.667 0.00 0.00 0.00 4.61
348 349 2.219164 GGACCAACGTACCCCCACT 61.219 63.158 0.00 0.00 0.00 4.00
349 350 1.294459 GACCAACGTACCCCCACTC 59.706 63.158 0.00 0.00 0.00 3.51
350 351 1.459921 ACCAACGTACCCCCACTCA 60.460 57.895 0.00 0.00 0.00 3.41
351 352 0.838987 ACCAACGTACCCCCACTCAT 60.839 55.000 0.00 0.00 0.00 2.90
352 353 0.326927 CCAACGTACCCCCACTCATT 59.673 55.000 0.00 0.00 0.00 2.57
353 354 1.555992 CCAACGTACCCCCACTCATTA 59.444 52.381 0.00 0.00 0.00 1.90
354 355 2.624636 CAACGTACCCCCACTCATTAC 58.375 52.381 0.00 0.00 0.00 1.89
355 356 1.941377 ACGTACCCCCACTCATTACA 58.059 50.000 0.00 0.00 0.00 2.41
356 357 1.829222 ACGTACCCCCACTCATTACAG 59.171 52.381 0.00 0.00 0.00 2.74
357 358 1.829222 CGTACCCCCACTCATTACAGT 59.171 52.381 0.00 0.00 0.00 3.55
358 359 3.025978 CGTACCCCCACTCATTACAGTA 58.974 50.000 0.00 0.00 0.00 2.74
359 360 3.448301 CGTACCCCCACTCATTACAGTAA 59.552 47.826 0.00 0.00 0.00 2.24
360 361 4.081531 CGTACCCCCACTCATTACAGTAAA 60.082 45.833 0.00 0.00 0.00 2.01
361 362 4.569719 ACCCCCACTCATTACAGTAAAG 57.430 45.455 0.00 0.00 0.00 1.85
362 363 3.265995 ACCCCCACTCATTACAGTAAAGG 59.734 47.826 0.00 0.00 0.00 3.11
363 364 3.521937 CCCCCACTCATTACAGTAAAGGA 59.478 47.826 0.00 0.00 0.00 3.36
364 365 4.384208 CCCCCACTCATTACAGTAAAGGAG 60.384 50.000 17.62 17.62 32.62 3.69
365 366 4.469945 CCCCACTCATTACAGTAAAGGAGA 59.530 45.833 22.76 9.03 31.54 3.71
366 367 5.045869 CCCCACTCATTACAGTAAAGGAGAA 60.046 44.000 22.76 0.00 31.54 2.87
367 368 6.472887 CCCACTCATTACAGTAAAGGAGAAA 58.527 40.000 22.76 0.00 31.54 2.52
368 369 6.940298 CCCACTCATTACAGTAAAGGAGAAAA 59.060 38.462 22.76 0.00 31.54 2.29
369 370 7.447238 CCCACTCATTACAGTAAAGGAGAAAAA 59.553 37.037 22.76 0.00 31.54 1.94
370 371 9.014297 CCACTCATTACAGTAAAGGAGAAAAAT 57.986 33.333 22.76 6.19 31.54 1.82
371 372 9.831737 CACTCATTACAGTAAAGGAGAAAAATG 57.168 33.333 22.76 12.05 31.54 2.32
372 373 8.515414 ACTCATTACAGTAAAGGAGAAAAATGC 58.485 33.333 22.76 0.00 31.54 3.56
373 374 8.402798 TCATTACAGTAAAGGAGAAAAATGCA 57.597 30.769 0.00 0.00 0.00 3.96
374 375 8.296713 TCATTACAGTAAAGGAGAAAAATGCAC 58.703 33.333 0.00 0.00 0.00 4.57
375 376 7.575414 TTACAGTAAAGGAGAAAAATGCACA 57.425 32.000 0.00 0.00 0.00 4.57
376 377 6.463995 ACAGTAAAGGAGAAAAATGCACAA 57.536 33.333 0.00 0.00 0.00 3.33
377 378 7.054491 ACAGTAAAGGAGAAAAATGCACAAT 57.946 32.000 0.00 0.00 0.00 2.71
378 379 7.500141 ACAGTAAAGGAGAAAAATGCACAATT 58.500 30.769 0.00 0.00 0.00 2.32
379 380 7.439056 ACAGTAAAGGAGAAAAATGCACAATTG 59.561 33.333 3.24 3.24 0.00 2.32
380 381 6.930722 AGTAAAGGAGAAAAATGCACAATTGG 59.069 34.615 10.83 0.00 0.00 3.16
381 382 5.549742 AAGGAGAAAAATGCACAATTGGA 57.450 34.783 10.83 0.00 0.00 3.53
382 383 5.750352 AGGAGAAAAATGCACAATTGGAT 57.250 34.783 10.83 0.00 34.74 3.41
383 384 5.727434 AGGAGAAAAATGCACAATTGGATC 58.273 37.500 10.83 0.00 31.38 3.36
384 385 5.482878 AGGAGAAAAATGCACAATTGGATCT 59.517 36.000 10.83 1.45 31.38 2.75
385 386 6.664816 AGGAGAAAAATGCACAATTGGATCTA 59.335 34.615 10.83 0.00 31.38 1.98
386 387 7.343833 AGGAGAAAAATGCACAATTGGATCTAT 59.656 33.333 10.83 0.00 31.38 1.98
387 388 7.437267 GGAGAAAAATGCACAATTGGATCTATG 59.563 37.037 10.83 0.00 31.38 2.23
388 389 7.844009 AGAAAAATGCACAATTGGATCTATGT 58.156 30.769 10.83 0.00 31.38 2.29
389 390 7.762615 AGAAAAATGCACAATTGGATCTATGTG 59.237 33.333 10.83 8.11 44.55 3.21
390 391 6.534475 AAATGCACAATTGGATCTATGTGT 57.466 33.333 10.83 2.80 43.82 3.72
391 392 5.762825 ATGCACAATTGGATCTATGTGTC 57.237 39.130 10.83 7.21 43.82 3.67
392 393 4.587891 TGCACAATTGGATCTATGTGTCA 58.412 39.130 10.83 9.12 43.82 3.58
393 394 4.637091 TGCACAATTGGATCTATGTGTCAG 59.363 41.667 10.83 0.00 43.82 3.51
394 395 4.497006 GCACAATTGGATCTATGTGTCAGC 60.497 45.833 10.83 3.17 43.82 4.26
395 396 4.880120 CACAATTGGATCTATGTGTCAGCT 59.120 41.667 10.83 0.00 38.62 4.24
396 397 5.356190 CACAATTGGATCTATGTGTCAGCTT 59.644 40.000 10.83 0.00 38.62 3.74
397 398 5.356190 ACAATTGGATCTATGTGTCAGCTTG 59.644 40.000 10.83 0.00 0.00 4.01
398 399 4.824479 TTGGATCTATGTGTCAGCTTGA 57.176 40.909 0.00 0.00 0.00 3.02
399 400 4.824479 TGGATCTATGTGTCAGCTTGAA 57.176 40.909 0.00 0.00 0.00 2.69
400 401 5.363562 TGGATCTATGTGTCAGCTTGAAT 57.636 39.130 0.00 0.00 0.00 2.57
401 402 5.748402 TGGATCTATGTGTCAGCTTGAATT 58.252 37.500 0.00 0.00 0.00 2.17
402 403 5.819379 TGGATCTATGTGTCAGCTTGAATTC 59.181 40.000 0.00 0.00 0.00 2.17
403 404 6.054295 GGATCTATGTGTCAGCTTGAATTCT 58.946 40.000 7.05 0.00 0.00 2.40
404 405 7.147672 TGGATCTATGTGTCAGCTTGAATTCTA 60.148 37.037 7.05 0.00 0.00 2.10
405 406 7.877097 GGATCTATGTGTCAGCTTGAATTCTAT 59.123 37.037 7.05 0.00 0.00 1.98
406 407 9.920133 GATCTATGTGTCAGCTTGAATTCTATA 57.080 33.333 7.05 0.00 0.00 1.31
407 408 9.926158 ATCTATGTGTCAGCTTGAATTCTATAG 57.074 33.333 7.05 0.00 0.00 1.31
408 409 8.363390 TCTATGTGTCAGCTTGAATTCTATAGG 58.637 37.037 7.05 0.00 0.00 2.57
409 410 6.544928 TGTGTCAGCTTGAATTCTATAGGA 57.455 37.500 7.05 0.00 0.00 2.94
410 411 7.129457 TGTGTCAGCTTGAATTCTATAGGAT 57.871 36.000 7.05 0.00 0.00 3.24
411 412 7.568349 TGTGTCAGCTTGAATTCTATAGGATT 58.432 34.615 5.92 5.92 0.00 3.01
412 413 8.704668 TGTGTCAGCTTGAATTCTATAGGATTA 58.295 33.333 6.23 0.00 0.00 1.75
413 414 9.202273 GTGTCAGCTTGAATTCTATAGGATTAG 57.798 37.037 6.23 3.06 0.00 1.73
414 415 8.370940 TGTCAGCTTGAATTCTATAGGATTAGG 58.629 37.037 6.23 1.85 0.00 2.69
415 416 8.589338 GTCAGCTTGAATTCTATAGGATTAGGA 58.411 37.037 6.23 0.00 0.00 2.94
416 417 9.159254 TCAGCTTGAATTCTATAGGATTAGGAA 57.841 33.333 6.23 0.31 0.00 3.36
417 418 9.956640 CAGCTTGAATTCTATAGGATTAGGAAT 57.043 33.333 6.23 0.00 0.00 3.01
459 460 7.602517 AAAAACGTTTGATTCCACATGAAAA 57.397 28.000 15.46 0.00 36.33 2.29
460 461 7.602517 AAAACGTTTGATTCCACATGAAAAA 57.397 28.000 15.46 0.00 36.33 1.94
461 462 6.582437 AACGTTTGATTCCACATGAAAAAC 57.418 33.333 0.00 0.00 36.33 2.43
462 463 5.655488 ACGTTTGATTCCACATGAAAAACA 58.345 33.333 0.00 0.00 35.09 2.83
463 464 6.102663 ACGTTTGATTCCACATGAAAAACAA 58.897 32.000 0.00 0.00 35.09 2.83
464 465 6.591834 ACGTTTGATTCCACATGAAAAACAAA 59.408 30.769 0.00 5.42 35.09 2.83
465 466 7.279758 ACGTTTGATTCCACATGAAAAACAAAT 59.720 29.630 0.00 0.00 35.09 2.32
466 467 7.583401 CGTTTGATTCCACATGAAAAACAAATG 59.417 33.333 0.00 9.21 35.09 2.32
467 468 8.610896 GTTTGATTCCACATGAAAAACAAATGA 58.389 29.630 0.00 0.00 37.15 2.57
468 469 8.728337 TTGATTCCACATGAAAAACAAATGAA 57.272 26.923 0.00 0.00 36.33 2.57
469 470 8.905660 TGATTCCACATGAAAAACAAATGAAT 57.094 26.923 0.00 0.00 36.33 2.57
470 471 9.339850 TGATTCCACATGAAAAACAAATGAATT 57.660 25.926 0.00 0.00 36.33 2.17
471 472 9.601971 GATTCCACATGAAAAACAAATGAATTG 57.398 29.630 0.00 0.00 39.68 2.32
472 473 9.122779 ATTCCACATGAAAAACAAATGAATTGT 57.877 25.926 0.00 0.00 44.63 2.71
487 488 9.350357 CAAATGAATTGTACCAAGAGATTTGAG 57.650 33.333 0.00 0.00 32.49 3.02
488 489 8.641498 AATGAATTGTACCAAGAGATTTGAGT 57.359 30.769 0.00 0.00 0.00 3.41
489 490 7.439157 TGAATTGTACCAAGAGATTTGAGTG 57.561 36.000 0.00 0.00 0.00 3.51
490 491 6.430925 TGAATTGTACCAAGAGATTTGAGTGG 59.569 38.462 0.00 0.00 35.39 4.00
491 492 5.560722 TTGTACCAAGAGATTTGAGTGGA 57.439 39.130 0.00 0.00 33.39 4.02
492 493 5.762179 TGTACCAAGAGATTTGAGTGGAT 57.238 39.130 0.00 0.00 33.39 3.41
493 494 5.491070 TGTACCAAGAGATTTGAGTGGATG 58.509 41.667 0.00 0.00 33.39 3.51
494 495 4.916041 ACCAAGAGATTTGAGTGGATGA 57.084 40.909 0.00 0.00 33.39 2.92
495 496 5.246981 ACCAAGAGATTTGAGTGGATGAA 57.753 39.130 0.00 0.00 33.39 2.57
496 497 5.634118 ACCAAGAGATTTGAGTGGATGAAA 58.366 37.500 0.00 0.00 33.39 2.69
497 498 5.474876 ACCAAGAGATTTGAGTGGATGAAAC 59.525 40.000 0.00 0.00 33.39 2.78
498 499 5.105997 CCAAGAGATTTGAGTGGATGAAACC 60.106 44.000 0.00 0.00 0.00 3.27
499 500 4.593956 AGAGATTTGAGTGGATGAAACCC 58.406 43.478 0.00 0.00 0.00 4.11
500 501 3.696548 GAGATTTGAGTGGATGAAACCCC 59.303 47.826 0.00 0.00 0.00 4.95
501 502 2.302587 TTTGAGTGGATGAAACCCCC 57.697 50.000 0.00 0.00 0.00 5.40
517 518 1.474330 CCCCCTACAAAATGGACTGC 58.526 55.000 0.00 0.00 0.00 4.40
518 519 1.272425 CCCCCTACAAAATGGACTGCA 60.272 52.381 0.00 0.00 0.00 4.41
519 520 2.524306 CCCCTACAAAATGGACTGCAA 58.476 47.619 0.00 0.00 0.00 4.08
520 521 2.896685 CCCCTACAAAATGGACTGCAAA 59.103 45.455 0.00 0.00 0.00 3.68
521 522 3.056607 CCCCTACAAAATGGACTGCAAAG 60.057 47.826 0.00 0.00 0.00 2.77
522 523 3.578688 CCTACAAAATGGACTGCAAAGC 58.421 45.455 0.00 0.00 0.00 3.51
523 524 3.005684 CCTACAAAATGGACTGCAAAGCA 59.994 43.478 0.00 0.00 36.92 3.91
524 525 3.540314 ACAAAATGGACTGCAAAGCAA 57.460 38.095 0.00 0.00 38.41 3.91
525 526 4.075963 ACAAAATGGACTGCAAAGCAAT 57.924 36.364 0.00 0.00 38.41 3.56
526 527 4.453751 ACAAAATGGACTGCAAAGCAATT 58.546 34.783 0.00 0.00 38.41 2.32
527 528 4.512571 ACAAAATGGACTGCAAAGCAATTC 59.487 37.500 0.00 0.00 38.41 2.17
528 529 4.612264 AAATGGACTGCAAAGCAATTCT 57.388 36.364 0.00 0.00 38.41 2.40
529 530 4.612264 AATGGACTGCAAAGCAATTCTT 57.388 36.364 0.00 0.00 38.41 2.52
530 531 5.726980 AATGGACTGCAAAGCAATTCTTA 57.273 34.783 0.00 0.00 38.41 2.10
531 532 4.771590 TGGACTGCAAAGCAATTCTTAG 57.228 40.909 0.00 0.00 38.41 2.18
532 533 3.507233 TGGACTGCAAAGCAATTCTTAGG 59.493 43.478 0.00 0.00 38.41 2.69
533 534 3.758554 GGACTGCAAAGCAATTCTTAGGA 59.241 43.478 0.00 0.00 38.41 2.94
534 535 4.142513 GGACTGCAAAGCAATTCTTAGGAG 60.143 45.833 0.00 0.00 38.41 3.69
535 536 4.401925 ACTGCAAAGCAATTCTTAGGAGT 58.598 39.130 0.00 0.00 38.41 3.85
536 537 4.829492 ACTGCAAAGCAATTCTTAGGAGTT 59.171 37.500 0.00 0.00 38.41 3.01
537 538 5.302823 ACTGCAAAGCAATTCTTAGGAGTTT 59.697 36.000 0.00 0.00 38.41 2.66
538 539 6.160576 TGCAAAGCAATTCTTAGGAGTTTT 57.839 33.333 0.00 0.00 34.76 2.43
539 540 6.215845 TGCAAAGCAATTCTTAGGAGTTTTC 58.784 36.000 0.00 0.00 34.76 2.29
540 541 5.635280 GCAAAGCAATTCTTAGGAGTTTTCC 59.365 40.000 0.00 0.00 37.65 3.13
541 542 8.827279 TGCAAAGCAATTCTTAGGAGTTTTCCT 61.827 37.037 1.23 1.23 45.74 3.36
557 558 9.847224 GGAGTTTTCCTAAGGATTTATCATACA 57.153 33.333 0.00 0.00 40.58 2.29
607 608 9.768215 AAAAACCCTATGAATCTGAATCCTAAA 57.232 29.630 0.00 0.00 0.00 1.85
608 609 9.768215 AAAACCCTATGAATCTGAATCCTAAAA 57.232 29.630 0.00 0.00 0.00 1.52
609 610 9.768215 AAACCCTATGAATCTGAATCCTAAAAA 57.232 29.630 0.00 0.00 0.00 1.94
651 652 9.912634 TTGAATTAAAGAGCCATGAAAAGTTAG 57.087 29.630 0.00 0.00 0.00 2.34
652 653 9.295825 TGAATTAAAGAGCCATGAAAAGTTAGA 57.704 29.630 0.00 0.00 0.00 2.10
654 655 5.635417 AAAGAGCCATGAAAAGTTAGAGC 57.365 39.130 0.00 0.00 0.00 4.09
655 656 4.292186 AGAGCCATGAAAAGTTAGAGCA 57.708 40.909 0.00 0.00 0.00 4.26
660 661 4.860907 GCCATGAAAAGTTAGAGCAATGTG 59.139 41.667 0.00 0.00 0.00 3.21
661 662 4.860907 CCATGAAAAGTTAGAGCAATGTGC 59.139 41.667 0.00 0.00 45.46 4.57
707 713 0.606401 ACTGTGATTGAGTTGGCCCG 60.606 55.000 0.00 0.00 0.00 6.13
779 785 2.758089 GCAGTCTGCCATTCGCCAG 61.758 63.158 14.27 0.00 37.42 4.85
785 791 3.512516 GCCATTCGCCAGCAGTCC 61.513 66.667 0.00 0.00 0.00 3.85
787 793 2.825836 CATTCGCCAGCAGTCCCC 60.826 66.667 0.00 0.00 0.00 4.81
864 871 4.899239 GCCATCCGACGGCTCCTG 62.899 72.222 9.66 3.91 46.56 3.86
865 872 3.461773 CCATCCGACGGCTCCTGT 61.462 66.667 9.66 0.00 0.00 4.00
922 930 0.749454 GCTCCGAGCACCAAATCCAT 60.749 55.000 15.78 0.00 41.89 3.41
1009 1018 1.002468 CACTTCAAAACACCCGAGCAG 60.002 52.381 0.00 0.00 0.00 4.24
1249 1259 3.099438 CTGCTCATCCGCAAGCTG 58.901 61.111 0.00 0.00 39.80 4.24
1496 1506 1.732259 CGCACTGCTAGGTGTTTTAGG 59.268 52.381 0.00 0.00 39.21 2.69
1497 1507 1.468914 GCACTGCTAGGTGTTTTAGGC 59.531 52.381 0.00 0.00 39.21 3.93
1500 1510 2.027100 ACTGCTAGGTGTTTTAGGCTCC 60.027 50.000 0.00 0.00 0.00 4.70
1531 1541 2.173382 GTTCCATGTGTGCGTCGC 59.827 61.111 11.10 11.10 0.00 5.19
1570 1580 3.250744 GTTGCTGTGCTTCGATGTACTA 58.749 45.455 17.89 6.37 0.00 1.82
1609 1619 5.912149 ATGGCTACCAGGATGAGATAAAA 57.088 39.130 0.00 0.00 39.69 1.52
1673 1689 6.387220 ACCCTCTGAATTACTGGCTATAGTTT 59.613 38.462 0.84 0.00 32.19 2.66
1687 1703 2.902705 TAGTTTGTCTGTCAGGCGTT 57.097 45.000 0.00 0.00 0.00 4.84
1688 1704 1.583054 AGTTTGTCTGTCAGGCGTTC 58.417 50.000 0.00 0.00 0.00 3.95
1689 1705 1.139058 AGTTTGTCTGTCAGGCGTTCT 59.861 47.619 0.00 0.00 0.00 3.01
1690 1706 1.261619 GTTTGTCTGTCAGGCGTTCTG 59.738 52.381 0.00 2.20 44.68 3.02
1691 1707 0.464036 TTGTCTGTCAGGCGTTCTGT 59.536 50.000 0.00 0.00 43.76 3.41
1692 1708 1.324383 TGTCTGTCAGGCGTTCTGTA 58.676 50.000 0.00 0.01 43.76 2.74
1693 1709 1.684450 TGTCTGTCAGGCGTTCTGTAA 59.316 47.619 0.00 0.00 43.76 2.41
1709 1725 6.904011 CGTTCTGTAATCTGAATGCATCTTTC 59.096 38.462 0.00 0.00 34.88 2.62
1717 1733 5.128205 TCTGAATGCATCTTTCGAATGGAT 58.872 37.500 0.00 9.22 0.00 3.41
1720 1736 6.290605 TGAATGCATCTTTCGAATGGATCTA 58.709 36.000 0.00 4.67 0.00 1.98
1721 1737 6.203530 TGAATGCATCTTTCGAATGGATCTAC 59.796 38.462 0.00 4.62 0.00 2.59
1722 1738 5.282055 TGCATCTTTCGAATGGATCTACT 57.718 39.130 10.78 0.00 0.00 2.57
1723 1739 5.674525 TGCATCTTTCGAATGGATCTACTT 58.325 37.500 10.78 0.00 0.00 2.24
1724 1740 5.755375 TGCATCTTTCGAATGGATCTACTTC 59.245 40.000 10.78 0.00 0.00 3.01
1725 1741 5.755375 GCATCTTTCGAATGGATCTACTTCA 59.245 40.000 10.78 0.00 0.00 3.02
1726 1742 6.258727 GCATCTTTCGAATGGATCTACTTCAA 59.741 38.462 10.78 0.00 0.00 2.69
1727 1743 7.201644 GCATCTTTCGAATGGATCTACTTCAAA 60.202 37.037 10.78 0.00 0.00 2.69
1728 1744 8.668353 CATCTTTCGAATGGATCTACTTCAAAA 58.332 33.333 10.78 0.00 0.00 2.44
1746 1762 4.450419 TCAAAATTAAAATTGCGGCTGGTG 59.550 37.500 0.00 0.00 0.00 4.17
1748 1764 2.430546 TTAAAATTGCGGCTGGTGTG 57.569 45.000 0.00 0.00 0.00 3.82
1761 1777 1.881973 CTGGTGTGGGTGATTTCTGTG 59.118 52.381 0.00 0.00 0.00 3.66
1764 1780 1.608590 GTGTGGGTGATTTCTGTGTGG 59.391 52.381 0.00 0.00 0.00 4.17
1766 1782 0.850100 TGGGTGATTTCTGTGTGGGT 59.150 50.000 0.00 0.00 0.00 4.51
1770 1786 1.000274 GTGATTTCTGTGTGGGTTGGC 60.000 52.381 0.00 0.00 0.00 4.52
1772 1788 1.686052 GATTTCTGTGTGGGTTGGCAA 59.314 47.619 0.00 0.00 0.00 4.52
1773 1789 1.561643 TTTCTGTGTGGGTTGGCAAA 58.438 45.000 0.00 0.00 0.00 3.68
1775 1791 1.561643 TCTGTGTGGGTTGGCAAAAA 58.438 45.000 0.00 0.00 0.00 1.94
1777 1793 3.300388 TCTGTGTGGGTTGGCAAAAATA 58.700 40.909 0.00 0.00 0.00 1.40
1780 1796 4.384056 TGTGTGGGTTGGCAAAAATATTG 58.616 39.130 0.00 0.00 0.00 1.90
1781 1797 4.101585 TGTGTGGGTTGGCAAAAATATTGA 59.898 37.500 0.00 0.00 0.00 2.57
1782 1798 5.059833 GTGTGGGTTGGCAAAAATATTGAA 58.940 37.500 0.00 0.00 0.00 2.69
1783 1799 5.049749 GTGTGGGTTGGCAAAAATATTGAAC 60.050 40.000 0.00 0.00 0.00 3.18
1797 1861 2.727123 TTGAACCAGAGCCTGTGAAA 57.273 45.000 0.00 0.00 0.00 2.69
1829 1893 5.631512 TGTAATTTATTTGCAGTTTGGCGTC 59.368 36.000 0.00 0.00 36.28 5.19
1830 1894 2.323939 TTATTTGCAGTTTGGCGTCG 57.676 45.000 0.00 0.00 36.28 5.12
1834 1898 1.163420 TTGCAGTTTGGCGTCGATGT 61.163 50.000 6.48 0.00 36.28 3.06
1847 1911 4.201773 GGCGTCGATGTTGTGATTAAATCA 60.202 41.667 6.48 0.00 36.84 2.57
1848 1912 4.957967 GCGTCGATGTTGTGATTAAATCAG 59.042 41.667 6.48 0.00 40.53 2.90
1849 1913 5.445939 GCGTCGATGTTGTGATTAAATCAGT 60.446 40.000 6.48 0.00 40.53 3.41
1850 1914 6.178507 CGTCGATGTTGTGATTAAATCAGTC 58.821 40.000 0.00 0.00 40.53 3.51
1851 1915 6.035005 CGTCGATGTTGTGATTAAATCAGTCT 59.965 38.462 0.00 0.00 40.53 3.24
1852 1916 7.176075 GTCGATGTTGTGATTAAATCAGTCTG 58.824 38.462 0.00 0.00 40.53 3.51
1853 1917 7.063426 GTCGATGTTGTGATTAAATCAGTCTGA 59.937 37.037 4.68 4.68 40.53 3.27
1854 1918 7.765819 TCGATGTTGTGATTAAATCAGTCTGAT 59.234 33.333 9.68 9.68 40.53 2.90
1865 1956 8.547967 TTAAATCAGTCTGATACAAACCTCAC 57.452 34.615 15.77 0.00 35.76 3.51
1866 1957 6.365970 AATCAGTCTGATACAAACCTCACT 57.634 37.500 15.77 0.00 35.76 3.41
1901 1993 4.764172 ACAAGAGAAGCATGATACTCACC 58.236 43.478 0.00 0.00 32.59 4.02
1909 2001 6.888632 AGAAGCATGATACTCACCATTCTTTT 59.111 34.615 0.00 0.00 29.06 2.27
1911 2003 5.359009 AGCATGATACTCACCATTCTTTTGG 59.641 40.000 0.00 0.00 42.82 3.28
1971 2064 6.869206 AGGGTAACTAGTTCTTAGATTGCA 57.131 37.500 12.39 0.00 33.39 4.08
1975 2068 7.097834 GGTAACTAGTTCTTAGATTGCAGTGT 58.902 38.462 12.39 0.00 33.39 3.55
1980 2073 8.030106 ACTAGTTCTTAGATTGCAGTGTAAGTC 58.970 37.037 20.75 15.93 33.39 3.01
1981 2074 6.759272 AGTTCTTAGATTGCAGTGTAAGTCA 58.241 36.000 20.75 10.03 0.00 3.41
1982 2075 7.390027 AGTTCTTAGATTGCAGTGTAAGTCAT 58.610 34.615 20.75 8.97 0.00 3.06
1983 2076 7.547370 AGTTCTTAGATTGCAGTGTAAGTCATC 59.453 37.037 20.75 12.14 0.00 2.92
1986 2079 3.937706 AGATTGCAGTGTAAGTCATCTGC 59.062 43.478 8.74 8.74 43.95 4.26
2024 2118 9.676861 TTCAGAATACATCTTCATCTTGTGAAT 57.323 29.630 0.00 0.00 45.36 2.57
2025 2119 9.676861 TCAGAATACATCTTCATCTTGTGAATT 57.323 29.630 0.00 0.00 45.36 2.17
2078 2172 8.055279 TGAATCCAAGATTGAGGTTGAAATAC 57.945 34.615 0.00 0.00 0.00 1.89
2083 2177 5.422214 AGATTGAGGTTGAAATACGGTCT 57.578 39.130 0.00 0.00 0.00 3.85
2088 2182 1.737793 GGTTGAAATACGGTCTGCTGG 59.262 52.381 0.00 0.00 0.00 4.85
2090 2184 3.270877 GTTGAAATACGGTCTGCTGGAT 58.729 45.455 0.00 0.00 0.00 3.41
2092 2186 3.270027 TGAAATACGGTCTGCTGGATTG 58.730 45.455 0.00 0.00 34.83 2.67
2113 2207 0.102844 TTCTGGTTTGTGCTTGCTGC 59.897 50.000 0.00 0.00 43.25 5.25
2123 2217 1.270550 GTGCTTGCTGCTTACCATGTT 59.729 47.619 0.00 0.00 43.37 2.71
2124 2218 1.962807 TGCTTGCTGCTTACCATGTTT 59.037 42.857 0.00 0.00 43.37 2.83
2125 2219 2.364970 TGCTTGCTGCTTACCATGTTTT 59.635 40.909 0.00 0.00 43.37 2.43
2201 2295 1.021202 CCAACTGCGGTTCTTGTGAA 58.979 50.000 8.28 0.00 32.73 3.18
2209 2303 2.094417 GCGGTTCTTGTGAATGAGTAGC 59.906 50.000 0.00 0.00 34.40 3.58
2283 2377 2.232452 CTGTGATCCGGAGTCTGAACTT 59.768 50.000 11.34 0.00 35.28 2.66
2290 2384 3.323691 TCCGGAGTCTGAACTTTCATCAA 59.676 43.478 0.00 0.00 35.28 2.57
2291 2385 3.681897 CCGGAGTCTGAACTTTCATCAAG 59.318 47.826 0.00 0.00 35.28 3.02
2292 2386 3.681897 CGGAGTCTGAACTTTCATCAAGG 59.318 47.826 0.00 0.00 36.72 3.61
2293 2387 4.646572 GGAGTCTGAACTTTCATCAAGGT 58.353 43.478 0.00 0.00 36.72 3.50
2296 2390 6.382869 AGTCTGAACTTTCATCAAGGTTTG 57.617 37.500 0.00 0.00 36.72 2.93
2299 2393 6.914757 GTCTGAACTTTCATCAAGGTTTGAAG 59.085 38.462 0.00 0.00 43.95 3.02
2300 2394 6.603201 TCTGAACTTTCATCAAGGTTTGAAGT 59.397 34.615 0.00 0.00 43.95 3.01
2331 2437 1.001020 ATTTCCCAGCACATCCGCA 60.001 52.632 0.00 0.00 0.00 5.69
2478 2584 4.529377 ACGAAAAGGACCCACTGATTACTA 59.471 41.667 0.00 0.00 0.00 1.82
2481 2587 7.070821 ACGAAAAGGACCCACTGATTACTATAT 59.929 37.037 0.00 0.00 0.00 0.86
2510 2616 1.242076 TCTTCTTTGCTGCTTCTGCC 58.758 50.000 0.00 0.00 38.71 4.85
2549 2655 3.280295 CTCTCCGCTCTTCACTACCTTA 58.720 50.000 0.00 0.00 0.00 2.69
2569 2675 1.603802 ACTGTTTCCACGACAAGCATG 59.396 47.619 0.00 0.00 0.00 4.06
2580 2686 4.146961 CACGACAAGCATGTTGATTGAAAC 59.853 41.667 16.02 3.29 45.75 2.78
2581 2687 4.202000 ACGACAAGCATGTTGATTGAAACA 60.202 37.500 16.02 0.00 45.75 2.83
2617 2723 3.576118 TCATATCCACAGGAAGCTCTAGC 59.424 47.826 0.00 0.00 34.34 3.42
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.818714 CAGAAGCGGCTCTGGCAG 60.819 66.667 8.58 8.58 39.39 4.85
4 5 0.739112 GAGTTCCAGAAGCGGCTCTG 60.739 60.000 17.20 17.20 42.19 3.35
5 6 1.594310 GAGTTCCAGAAGCGGCTCT 59.406 57.895 1.45 0.00 0.00 4.09
6 7 1.448717 GGAGTTCCAGAAGCGGCTC 60.449 63.158 1.45 0.00 35.64 4.70
7 8 2.217038 TGGAGTTCCAGAAGCGGCT 61.217 57.895 0.00 0.00 42.01 5.52
8 9 2.347490 TGGAGTTCCAGAAGCGGC 59.653 61.111 0.00 0.00 42.01 6.53
16 17 1.002624 GGGCGAATGTGGAGTTCCA 60.003 57.895 0.00 0.00 45.30 3.53
17 18 1.749258 GGGGCGAATGTGGAGTTCC 60.749 63.158 0.00 0.00 0.00 3.62
18 19 1.749258 GGGGGCGAATGTGGAGTTC 60.749 63.158 0.00 0.00 0.00 3.01
19 20 2.355115 GGGGGCGAATGTGGAGTT 59.645 61.111 0.00 0.00 0.00 3.01
20 21 2.933287 TGGGGGCGAATGTGGAGT 60.933 61.111 0.00 0.00 0.00 3.85
21 22 2.438434 GTGGGGGCGAATGTGGAG 60.438 66.667 0.00 0.00 0.00 3.86
22 23 2.611505 ATGTGGGGGCGAATGTGGA 61.612 57.895 0.00 0.00 0.00 4.02
23 24 2.044053 ATGTGGGGGCGAATGTGG 60.044 61.111 0.00 0.00 0.00 4.17
24 25 2.417257 CCATGTGGGGGCGAATGTG 61.417 63.158 0.00 0.00 0.00 3.21
25 26 2.044053 CCATGTGGGGGCGAATGT 60.044 61.111 0.00 0.00 0.00 2.71
26 27 3.530260 GCCATGTGGGGGCGAATG 61.530 66.667 0.54 0.00 42.39 2.67
67 68 2.025359 CTCAATTTCTCGCCGTCGGC 62.025 60.000 26.69 26.69 46.75 5.54
68 69 0.457853 TCTCAATTTCTCGCCGTCGG 60.458 55.000 6.99 6.99 36.13 4.79
69 70 0.917259 CTCTCAATTTCTCGCCGTCG 59.083 55.000 0.00 0.00 0.00 5.12
70 71 2.189342 CTCTCTCAATTTCTCGCCGTC 58.811 52.381 0.00 0.00 0.00 4.79
71 72 1.546476 ACTCTCTCAATTTCTCGCCGT 59.454 47.619 0.00 0.00 0.00 5.68
72 73 1.923204 CACTCTCTCAATTTCTCGCCG 59.077 52.381 0.00 0.00 0.00 6.46
73 74 2.093973 TCCACTCTCTCAATTTCTCGCC 60.094 50.000 0.00 0.00 0.00 5.54
74 75 3.238108 TCCACTCTCTCAATTTCTCGC 57.762 47.619 0.00 0.00 0.00 5.03
75 76 4.629200 CCTTTCCACTCTCTCAATTTCTCG 59.371 45.833 0.00 0.00 0.00 4.04
76 77 4.940654 CCCTTTCCACTCTCTCAATTTCTC 59.059 45.833 0.00 0.00 0.00 2.87
77 78 4.263683 CCCCTTTCCACTCTCTCAATTTCT 60.264 45.833 0.00 0.00 0.00 2.52
78 79 4.013050 CCCCTTTCCACTCTCTCAATTTC 58.987 47.826 0.00 0.00 0.00 2.17
79 80 3.657727 TCCCCTTTCCACTCTCTCAATTT 59.342 43.478 0.00 0.00 0.00 1.82
80 81 3.260205 TCCCCTTTCCACTCTCTCAATT 58.740 45.455 0.00 0.00 0.00 2.32
81 82 2.921221 TCCCCTTTCCACTCTCTCAAT 58.079 47.619 0.00 0.00 0.00 2.57
82 83 2.415983 TCCCCTTTCCACTCTCTCAA 57.584 50.000 0.00 0.00 0.00 3.02
83 84 2.415983 TTCCCCTTTCCACTCTCTCA 57.584 50.000 0.00 0.00 0.00 3.27
84 85 2.159028 CGATTCCCCTTTCCACTCTCTC 60.159 54.545 0.00 0.00 0.00 3.20
85 86 1.834263 CGATTCCCCTTTCCACTCTCT 59.166 52.381 0.00 0.00 0.00 3.10
86 87 1.134371 CCGATTCCCCTTTCCACTCTC 60.134 57.143 0.00 0.00 0.00 3.20
87 88 0.912486 CCGATTCCCCTTTCCACTCT 59.088 55.000 0.00 0.00 0.00 3.24
88 89 0.909623 TCCGATTCCCCTTTCCACTC 59.090 55.000 0.00 0.00 0.00 3.51
89 90 1.212935 CATCCGATTCCCCTTTCCACT 59.787 52.381 0.00 0.00 0.00 4.00
90 91 1.680338 CATCCGATTCCCCTTTCCAC 58.320 55.000 0.00 0.00 0.00 4.02
91 92 0.550914 CCATCCGATTCCCCTTTCCA 59.449 55.000 0.00 0.00 0.00 3.53
92 93 0.823769 GCCATCCGATTCCCCTTTCC 60.824 60.000 0.00 0.00 0.00 3.13
93 94 0.183731 AGCCATCCGATTCCCCTTTC 59.816 55.000 0.00 0.00 0.00 2.62
94 95 0.183731 GAGCCATCCGATTCCCCTTT 59.816 55.000 0.00 0.00 0.00 3.11
95 96 0.988145 TGAGCCATCCGATTCCCCTT 60.988 55.000 0.00 0.00 0.00 3.95
96 97 1.384502 TGAGCCATCCGATTCCCCT 60.385 57.895 0.00 0.00 0.00 4.79
97 98 1.227973 GTGAGCCATCCGATTCCCC 60.228 63.158 0.00 0.00 0.00 4.81
98 99 1.595382 CGTGAGCCATCCGATTCCC 60.595 63.158 0.00 0.00 0.00 3.97
99 100 1.595382 CCGTGAGCCATCCGATTCC 60.595 63.158 0.00 0.00 0.00 3.01
100 101 2.247437 GCCGTGAGCCATCCGATTC 61.247 63.158 0.00 0.00 34.35 2.52
101 102 2.203070 GCCGTGAGCCATCCGATT 60.203 61.111 0.00 0.00 34.35 3.34
102 103 4.592192 CGCCGTGAGCCATCCGAT 62.592 66.667 0.00 0.00 38.78 4.18
115 116 4.742201 CATATCCCCTCGCCGCCG 62.742 72.222 0.00 0.00 0.00 6.46
116 117 4.394712 CCATATCCCCTCGCCGCC 62.395 72.222 0.00 0.00 0.00 6.13
117 118 2.676163 AAACCATATCCCCTCGCCGC 62.676 60.000 0.00 0.00 0.00 6.53
118 119 0.884704 CAAACCATATCCCCTCGCCG 60.885 60.000 0.00 0.00 0.00 6.46
119 120 0.472471 TCAAACCATATCCCCTCGCC 59.528 55.000 0.00 0.00 0.00 5.54
120 121 1.947456 GTTCAAACCATATCCCCTCGC 59.053 52.381 0.00 0.00 0.00 5.03
133 134 3.282557 CCCTTTTGCGGGTTCAAAC 57.717 52.632 0.00 0.00 39.51 2.93
141 142 1.894756 TTCCACGACCCTTTTGCGG 60.895 57.895 0.00 0.00 0.00 5.69
142 143 1.281656 GTTCCACGACCCTTTTGCG 59.718 57.895 0.00 0.00 0.00 4.85
143 144 1.658114 GGTTCCACGACCCTTTTGC 59.342 57.895 0.00 0.00 33.41 3.68
144 145 1.946267 CGGTTCCACGACCCTTTTG 59.054 57.895 0.00 0.00 36.28 2.44
145 146 1.895231 GCGGTTCCACGACCCTTTT 60.895 57.895 0.00 0.00 36.28 2.27
146 147 2.281276 GCGGTTCCACGACCCTTT 60.281 61.111 0.00 0.00 36.28 3.11
147 148 3.552384 TGCGGTTCCACGACCCTT 61.552 61.111 0.00 0.00 36.28 3.95
148 149 4.309950 GTGCGGTTCCACGACCCT 62.310 66.667 0.00 0.00 36.28 4.34
149 150 2.438951 TAAGTGCGGTTCCACGACCC 62.439 60.000 0.00 0.00 40.59 4.46
150 151 0.390735 ATAAGTGCGGTTCCACGACC 60.391 55.000 0.00 0.00 40.59 4.79
151 152 2.190981 CTATAAGTGCGGTTCCACGAC 58.809 52.381 0.00 0.00 40.59 4.34
152 153 1.820519 ACTATAAGTGCGGTTCCACGA 59.179 47.619 0.00 0.00 40.59 4.35
153 154 1.924524 CACTATAAGTGCGGTTCCACG 59.075 52.381 0.00 0.00 39.62 4.94
164 165 1.137086 CACGCCCTGAGCACTATAAGT 59.863 52.381 0.00 0.00 44.04 2.24
165 166 1.858091 CACGCCCTGAGCACTATAAG 58.142 55.000 0.00 0.00 44.04 1.73
166 167 0.179084 GCACGCCCTGAGCACTATAA 60.179 55.000 0.00 0.00 44.04 0.98
167 168 1.441729 GCACGCCCTGAGCACTATA 59.558 57.895 0.00 0.00 44.04 1.31
168 169 2.187946 GCACGCCCTGAGCACTAT 59.812 61.111 0.00 0.00 44.04 2.12
169 170 4.435436 CGCACGCCCTGAGCACTA 62.435 66.667 0.00 0.00 44.04 2.74
174 175 3.726517 CAAACCGCACGCCCTGAG 61.727 66.667 0.00 0.00 0.00 3.35
192 193 3.572196 AAAATGTTGCCGCAGCCCG 62.572 57.895 4.63 0.00 38.69 6.13
193 194 1.301637 AAAAATGTTGCCGCAGCCC 60.302 52.632 4.63 0.00 38.69 5.19
194 195 4.359475 AAAAATGTTGCCGCAGCC 57.641 50.000 4.63 0.00 38.69 4.85
219 220 4.524318 AACCCGCATACTCGCCCG 62.524 66.667 0.00 0.00 0.00 6.13
220 221 2.588034 GAACCCGCATACTCGCCC 60.588 66.667 0.00 0.00 0.00 6.13
221 222 1.883084 CAGAACCCGCATACTCGCC 60.883 63.158 0.00 0.00 0.00 5.54
222 223 0.739813 AACAGAACCCGCATACTCGC 60.740 55.000 0.00 0.00 0.00 5.03
223 224 1.135083 AGAACAGAACCCGCATACTCG 60.135 52.381 0.00 0.00 0.00 4.18
224 225 2.271800 CAGAACAGAACCCGCATACTC 58.728 52.381 0.00 0.00 0.00 2.59
225 226 1.066143 CCAGAACAGAACCCGCATACT 60.066 52.381 0.00 0.00 0.00 2.12
226 227 1.369625 CCAGAACAGAACCCGCATAC 58.630 55.000 0.00 0.00 0.00 2.39
227 228 0.392461 GCCAGAACAGAACCCGCATA 60.392 55.000 0.00 0.00 0.00 3.14
228 229 1.675641 GCCAGAACAGAACCCGCAT 60.676 57.895 0.00 0.00 0.00 4.73
229 230 2.281484 GCCAGAACAGAACCCGCA 60.281 61.111 0.00 0.00 0.00 5.69
230 231 3.056328 GGCCAGAACAGAACCCGC 61.056 66.667 0.00 0.00 0.00 6.13
231 232 2.742372 CGGCCAGAACAGAACCCG 60.742 66.667 2.24 0.00 0.00 5.28
232 233 2.359975 CCGGCCAGAACAGAACCC 60.360 66.667 2.24 0.00 0.00 4.11
233 234 0.536460 TTTCCGGCCAGAACAGAACC 60.536 55.000 0.00 0.00 0.00 3.62
234 235 1.314730 TTTTCCGGCCAGAACAGAAC 58.685 50.000 0.00 0.00 0.00 3.01
235 236 2.286365 ATTTTCCGGCCAGAACAGAA 57.714 45.000 0.00 0.00 0.00 3.02
236 237 1.885887 CAATTTTCCGGCCAGAACAGA 59.114 47.619 0.00 0.00 0.00 3.41
237 238 1.067635 CCAATTTTCCGGCCAGAACAG 60.068 52.381 0.00 0.00 0.00 3.16
238 239 0.965439 CCAATTTTCCGGCCAGAACA 59.035 50.000 0.00 0.00 0.00 3.18
239 240 0.389817 GCCAATTTTCCGGCCAGAAC 60.390 55.000 0.00 0.00 42.82 3.01
240 241 1.971418 GCCAATTTTCCGGCCAGAA 59.029 52.632 2.24 0.00 42.82 3.02
241 242 3.693411 GCCAATTTTCCGGCCAGA 58.307 55.556 2.24 0.00 42.82 3.86
246 247 1.214325 GTTCGGGCCAATTTTCCGG 59.786 57.895 4.39 0.00 43.54 5.14
247 248 1.214325 GGTTCGGGCCAATTTTCCG 59.786 57.895 4.39 0.00 44.59 4.30
248 249 1.594833 GGGTTCGGGCCAATTTTCC 59.405 57.895 4.39 0.00 0.00 3.13
249 250 1.214325 CGGGTTCGGGCCAATTTTC 59.786 57.895 4.39 0.00 0.00 2.29
250 251 2.938086 GCGGGTTCGGGCCAATTTT 61.938 57.895 4.39 0.00 36.79 1.82
251 252 3.378602 GCGGGTTCGGGCCAATTT 61.379 61.111 4.39 0.00 36.79 1.82
252 253 2.559922 TATGCGGGTTCGGGCCAATT 62.560 55.000 4.39 0.00 36.79 2.32
253 254 3.050354 TATGCGGGTTCGGGCCAAT 62.050 57.895 4.39 0.00 36.79 3.16
254 255 3.718395 TATGCGGGTTCGGGCCAA 61.718 61.111 4.39 0.00 36.79 4.52
255 256 4.476752 GTATGCGGGTTCGGGCCA 62.477 66.667 4.39 0.00 36.79 5.36
256 257 4.171103 AGTATGCGGGTTCGGGCC 62.171 66.667 0.00 0.00 36.79 5.80
257 258 2.588034 GAGTATGCGGGTTCGGGC 60.588 66.667 0.00 0.00 36.79 6.13
258 259 2.279252 CGAGTATGCGGGTTCGGG 60.279 66.667 0.00 0.00 36.79 5.14
259 260 2.960129 GCGAGTATGCGGGTTCGG 60.960 66.667 0.00 0.00 36.79 4.30
260 261 2.960129 GGCGAGTATGCGGGTTCG 60.960 66.667 0.00 0.00 39.81 3.95
261 262 2.960129 CGGCGAGTATGCGGGTTC 60.960 66.667 0.00 0.00 35.06 3.62
262 263 4.524318 CCGGCGAGTATGCGGGTT 62.524 66.667 9.30 0.00 46.82 4.11
265 266 1.157870 AAATTCCGGCGAGTATGCGG 61.158 55.000 9.30 0.00 35.06 5.69
266 267 0.655733 AAAATTCCGGCGAGTATGCG 59.344 50.000 9.30 0.00 35.06 4.73
267 268 2.450160 CAAAAATTCCGGCGAGTATGC 58.550 47.619 9.30 0.00 0.00 3.14
268 269 2.450160 GCAAAAATTCCGGCGAGTATG 58.550 47.619 9.30 0.00 0.00 2.39
269 270 2.844122 GCAAAAATTCCGGCGAGTAT 57.156 45.000 9.30 0.00 0.00 2.12
275 276 2.813474 GCCCGCAAAAATTCCGGC 60.813 61.111 0.00 0.00 40.65 6.13
276 277 2.125713 GGCCCGCAAAAATTCCGG 60.126 61.111 0.00 0.00 41.60 5.14
277 278 2.505997 CGGCCCGCAAAAATTCCG 60.506 61.111 0.00 0.00 0.00 4.30
278 279 2.125713 CCGGCCCGCAAAAATTCC 60.126 61.111 0.00 0.00 0.00 3.01
279 280 1.445410 GTCCGGCCCGCAAAAATTC 60.445 57.895 0.00 0.00 0.00 2.17
280 281 2.654289 GTCCGGCCCGCAAAAATT 59.346 55.556 0.00 0.00 0.00 1.82
281 282 3.743636 CGTCCGGCCCGCAAAAAT 61.744 61.111 0.00 0.00 0.00 1.82
291 292 4.084888 CTCCGCAAAACGTCCGGC 62.085 66.667 0.00 4.09 41.68 6.13
292 293 2.663852 ACTCCGCAAAACGTCCGG 60.664 61.111 0.00 0.00 43.21 5.14
293 294 1.663702 AGACTCCGCAAAACGTCCG 60.664 57.895 0.00 0.00 41.42 4.79
294 295 1.860078 CAGACTCCGCAAAACGTCC 59.140 57.895 0.00 0.00 41.42 4.79
295 296 1.204312 GCAGACTCCGCAAAACGTC 59.796 57.895 0.00 0.00 41.42 4.34
296 297 0.032952 TAGCAGACTCCGCAAAACGT 59.967 50.000 0.00 0.00 41.42 3.99
297 298 0.716108 CTAGCAGACTCCGCAAAACG 59.284 55.000 0.00 0.00 43.15 3.60
298 299 1.996191 CTCTAGCAGACTCCGCAAAAC 59.004 52.381 0.00 0.00 0.00 2.43
299 300 1.618837 ACTCTAGCAGACTCCGCAAAA 59.381 47.619 0.00 0.00 0.00 2.44
300 301 1.257743 ACTCTAGCAGACTCCGCAAA 58.742 50.000 0.00 0.00 0.00 3.68
301 302 1.067565 CAACTCTAGCAGACTCCGCAA 60.068 52.381 0.00 0.00 0.00 4.85
302 303 0.528017 CAACTCTAGCAGACTCCGCA 59.472 55.000 0.00 0.00 0.00 5.69
303 304 0.804156 GCAACTCTAGCAGACTCCGC 60.804 60.000 0.00 0.00 0.00 5.54
304 305 0.814457 AGCAACTCTAGCAGACTCCG 59.186 55.000 0.00 0.00 0.00 4.63
305 306 2.099405 AGAGCAACTCTAGCAGACTCC 58.901 52.381 0.00 0.00 39.28 3.85
306 307 2.752354 TCAGAGCAACTCTAGCAGACTC 59.248 50.000 0.00 0.00 38.99 3.36
307 308 2.754552 CTCAGAGCAACTCTAGCAGACT 59.245 50.000 0.00 0.00 38.99 3.24
308 309 2.735126 GCTCAGAGCAACTCTAGCAGAC 60.735 54.545 18.17 0.00 38.99 3.51
309 310 1.476085 GCTCAGAGCAACTCTAGCAGA 59.524 52.381 18.17 3.14 38.99 4.26
310 311 1.798446 CGCTCAGAGCAACTCTAGCAG 60.798 57.143 22.49 0.00 42.58 4.24
311 312 0.172127 CGCTCAGAGCAACTCTAGCA 59.828 55.000 22.49 0.92 42.58 3.49
312 313 0.527385 CCGCTCAGAGCAACTCTAGC 60.527 60.000 22.49 12.29 42.58 3.42
313 314 1.098869 TCCGCTCAGAGCAACTCTAG 58.901 55.000 22.49 3.82 42.58 2.43
314 315 0.811915 GTCCGCTCAGAGCAACTCTA 59.188 55.000 22.49 0.00 42.58 2.43
315 316 1.589113 GTCCGCTCAGAGCAACTCT 59.411 57.895 22.49 0.00 42.58 3.24
316 317 1.446966 GGTCCGCTCAGAGCAACTC 60.447 63.158 22.49 8.92 42.58 3.01
317 318 1.758440 TTGGTCCGCTCAGAGCAACT 61.758 55.000 22.49 0.00 46.32 3.16
318 319 1.301716 TTGGTCCGCTCAGAGCAAC 60.302 57.895 22.49 17.84 46.32 4.17
320 321 2.343758 GTTGGTCCGCTCAGAGCA 59.656 61.111 22.49 0.21 42.58 4.26
321 322 2.209064 TACGTTGGTCCGCTCAGAGC 62.209 60.000 12.94 12.94 38.02 4.09
322 323 0.456312 GTACGTTGGTCCGCTCAGAG 60.456 60.000 0.00 0.00 0.00 3.35
323 324 1.582968 GTACGTTGGTCCGCTCAGA 59.417 57.895 0.00 0.00 0.00 3.27
324 325 1.445582 GGTACGTTGGTCCGCTCAG 60.446 63.158 0.00 0.00 0.00 3.35
325 326 2.652530 GGTACGTTGGTCCGCTCA 59.347 61.111 0.00 0.00 0.00 4.26
326 327 2.125793 GGGTACGTTGGTCCGCTC 60.126 66.667 0.00 0.00 0.00 5.03
327 328 3.698820 GGGGTACGTTGGTCCGCT 61.699 66.667 0.00 0.00 0.00 5.52
328 329 4.765449 GGGGGTACGTTGGTCCGC 62.765 72.222 0.00 0.12 0.00 5.54
329 330 3.312718 TGGGGGTACGTTGGTCCG 61.313 66.667 0.00 0.00 0.00 4.79
330 331 2.176314 GAGTGGGGGTACGTTGGTCC 62.176 65.000 0.00 0.00 0.00 4.46
331 332 1.294459 GAGTGGGGGTACGTTGGTC 59.706 63.158 0.00 0.00 0.00 4.02
332 333 0.838987 ATGAGTGGGGGTACGTTGGT 60.839 55.000 0.00 0.00 0.00 3.67
333 334 0.326927 AATGAGTGGGGGTACGTTGG 59.673 55.000 0.00 0.00 0.00 3.77
334 335 2.027929 TGTAATGAGTGGGGGTACGTTG 60.028 50.000 0.00 0.00 0.00 4.10
335 336 2.235402 CTGTAATGAGTGGGGGTACGTT 59.765 50.000 0.00 0.00 0.00 3.99
336 337 1.829222 CTGTAATGAGTGGGGGTACGT 59.171 52.381 0.00 0.00 0.00 3.57
337 338 1.829222 ACTGTAATGAGTGGGGGTACG 59.171 52.381 0.00 0.00 0.00 3.67
338 339 5.425196 TTTACTGTAATGAGTGGGGGTAC 57.575 43.478 0.37 0.00 0.00 3.34
339 340 4.472108 CCTTTACTGTAATGAGTGGGGGTA 59.528 45.833 13.28 0.00 0.00 3.69
340 341 3.265995 CCTTTACTGTAATGAGTGGGGGT 59.734 47.826 13.28 0.00 0.00 4.95
341 342 3.521937 TCCTTTACTGTAATGAGTGGGGG 59.478 47.826 13.28 2.65 0.00 5.40
342 343 4.469945 TCTCCTTTACTGTAATGAGTGGGG 59.530 45.833 18.94 10.33 0.00 4.96
343 344 5.677319 TCTCCTTTACTGTAATGAGTGGG 57.323 43.478 18.94 9.13 0.00 4.61
344 345 7.979444 TTTTCTCCTTTACTGTAATGAGTGG 57.021 36.000 18.94 10.36 0.00 4.00
345 346 9.831737 CATTTTTCTCCTTTACTGTAATGAGTG 57.168 33.333 18.94 11.01 0.00 3.51
346 347 8.515414 GCATTTTTCTCCTTTACTGTAATGAGT 58.485 33.333 18.94 0.00 0.00 3.41
347 348 8.514594 TGCATTTTTCTCCTTTACTGTAATGAG 58.485 33.333 13.28 14.73 0.00 2.90
348 349 8.296713 GTGCATTTTTCTCCTTTACTGTAATGA 58.703 33.333 13.28 7.35 0.00 2.57
349 350 8.081633 TGTGCATTTTTCTCCTTTACTGTAATG 58.918 33.333 0.37 3.93 0.00 1.90
350 351 8.177119 TGTGCATTTTTCTCCTTTACTGTAAT 57.823 30.769 0.37 0.00 0.00 1.89
351 352 7.575414 TGTGCATTTTTCTCCTTTACTGTAA 57.425 32.000 0.00 0.00 0.00 2.41
352 353 7.575414 TTGTGCATTTTTCTCCTTTACTGTA 57.425 32.000 0.00 0.00 0.00 2.74
353 354 6.463995 TTGTGCATTTTTCTCCTTTACTGT 57.536 33.333 0.00 0.00 0.00 3.55
354 355 7.095523 CCAATTGTGCATTTTTCTCCTTTACTG 60.096 37.037 4.43 0.00 0.00 2.74
355 356 6.930722 CCAATTGTGCATTTTTCTCCTTTACT 59.069 34.615 4.43 0.00 0.00 2.24
356 357 6.928492 TCCAATTGTGCATTTTTCTCCTTTAC 59.072 34.615 4.43 0.00 0.00 2.01
357 358 7.060383 TCCAATTGTGCATTTTTCTCCTTTA 57.940 32.000 4.43 0.00 0.00 1.85
358 359 5.927819 TCCAATTGTGCATTTTTCTCCTTT 58.072 33.333 4.43 0.00 0.00 3.11
359 360 5.549742 TCCAATTGTGCATTTTTCTCCTT 57.450 34.783 4.43 0.00 0.00 3.36
360 361 5.482878 AGATCCAATTGTGCATTTTTCTCCT 59.517 36.000 4.43 0.00 0.00 3.69
361 362 5.727434 AGATCCAATTGTGCATTTTTCTCC 58.273 37.500 4.43 0.00 0.00 3.71
362 363 7.977853 ACATAGATCCAATTGTGCATTTTTCTC 59.022 33.333 4.43 0.00 0.00 2.87
363 364 7.762615 CACATAGATCCAATTGTGCATTTTTCT 59.237 33.333 4.43 0.00 33.78 2.52
364 365 7.546667 ACACATAGATCCAATTGTGCATTTTTC 59.453 33.333 4.43 0.00 42.45 2.29
365 366 7.388437 ACACATAGATCCAATTGTGCATTTTT 58.612 30.769 4.43 0.00 42.45 1.94
366 367 6.938507 ACACATAGATCCAATTGTGCATTTT 58.061 32.000 4.43 0.00 42.45 1.82
367 368 6.153170 TGACACATAGATCCAATTGTGCATTT 59.847 34.615 4.43 0.00 42.45 2.32
368 369 5.653330 TGACACATAGATCCAATTGTGCATT 59.347 36.000 4.43 0.00 42.45 3.56
369 370 5.195185 TGACACATAGATCCAATTGTGCAT 58.805 37.500 4.43 0.00 42.45 3.96
370 371 4.587891 TGACACATAGATCCAATTGTGCA 58.412 39.130 4.43 9.59 42.45 4.57
371 372 4.497006 GCTGACACATAGATCCAATTGTGC 60.497 45.833 4.43 7.87 42.45 4.57
372 373 4.880120 AGCTGACACATAGATCCAATTGTG 59.120 41.667 4.43 11.30 43.88 3.33
373 374 5.108187 AGCTGACACATAGATCCAATTGT 57.892 39.130 4.43 0.00 0.00 2.71
374 375 5.587443 TCAAGCTGACACATAGATCCAATTG 59.413 40.000 0.00 0.00 0.00 2.32
375 376 5.748402 TCAAGCTGACACATAGATCCAATT 58.252 37.500 0.00 0.00 0.00 2.32
376 377 5.363562 TCAAGCTGACACATAGATCCAAT 57.636 39.130 0.00 0.00 0.00 3.16
377 378 4.824479 TCAAGCTGACACATAGATCCAA 57.176 40.909 0.00 0.00 0.00 3.53
378 379 4.824479 TTCAAGCTGACACATAGATCCA 57.176 40.909 0.00 0.00 0.00 3.41
379 380 6.054295 AGAATTCAAGCTGACACATAGATCC 58.946 40.000 8.44 0.00 0.00 3.36
380 381 8.830201 ATAGAATTCAAGCTGACACATAGATC 57.170 34.615 8.44 0.00 0.00 2.75
381 382 9.926158 CTATAGAATTCAAGCTGACACATAGAT 57.074 33.333 8.44 0.00 0.00 1.98
382 383 8.363390 CCTATAGAATTCAAGCTGACACATAGA 58.637 37.037 8.44 0.00 0.00 1.98
383 384 8.363390 TCCTATAGAATTCAAGCTGACACATAG 58.637 37.037 8.44 0.00 0.00 2.23
384 385 8.250143 TCCTATAGAATTCAAGCTGACACATA 57.750 34.615 8.44 0.00 0.00 2.29
385 386 7.129457 TCCTATAGAATTCAAGCTGACACAT 57.871 36.000 8.44 0.00 0.00 3.21
386 387 6.544928 TCCTATAGAATTCAAGCTGACACA 57.455 37.500 8.44 0.00 0.00 3.72
387 388 9.202273 CTAATCCTATAGAATTCAAGCTGACAC 57.798 37.037 8.44 0.00 0.00 3.67
388 389 8.370940 CCTAATCCTATAGAATTCAAGCTGACA 58.629 37.037 8.44 0.00 0.00 3.58
389 390 8.589338 TCCTAATCCTATAGAATTCAAGCTGAC 58.411 37.037 8.44 0.00 0.00 3.51
390 391 8.727100 TCCTAATCCTATAGAATTCAAGCTGA 57.273 34.615 8.44 0.00 0.00 4.26
391 392 9.956640 ATTCCTAATCCTATAGAATTCAAGCTG 57.043 33.333 8.44 0.00 0.00 4.24
435 436 7.602517 TTTTCATGTGGAATCAAACGTTTTT 57.397 28.000 11.66 4.00 34.91 1.94
436 437 7.118390 TGTTTTTCATGTGGAATCAAACGTTTT 59.882 29.630 11.66 0.00 38.31 2.43
437 438 6.591834 TGTTTTTCATGTGGAATCAAACGTTT 59.408 30.769 7.96 7.96 38.31 3.60
438 439 6.102663 TGTTTTTCATGTGGAATCAAACGTT 58.897 32.000 0.00 0.00 38.31 3.99
439 440 5.655488 TGTTTTTCATGTGGAATCAAACGT 58.345 33.333 0.00 0.00 38.31 3.99
440 441 6.580963 TTGTTTTTCATGTGGAATCAAACG 57.419 33.333 0.00 0.00 38.31 3.60
441 442 8.610896 TCATTTGTTTTTCATGTGGAATCAAAC 58.389 29.630 12.39 0.00 37.01 2.93
442 443 8.728337 TCATTTGTTTTTCATGTGGAATCAAA 57.272 26.923 12.46 12.46 36.45 2.69
443 444 8.728337 TTCATTTGTTTTTCATGTGGAATCAA 57.272 26.923 0.00 0.00 34.91 2.57
444 445 8.905660 ATTCATTTGTTTTTCATGTGGAATCA 57.094 26.923 0.00 0.00 34.91 2.57
445 446 9.601971 CAATTCATTTGTTTTTCATGTGGAATC 57.398 29.630 0.00 0.00 34.91 2.52
446 447 9.122779 ACAATTCATTTGTTTTTCATGTGGAAT 57.877 25.926 0.00 0.00 46.51 3.01
447 448 8.503458 ACAATTCATTTGTTTTTCATGTGGAA 57.497 26.923 0.00 0.00 46.51 3.53
448 449 9.039870 GTACAATTCATTTGTTTTTCATGTGGA 57.960 29.630 0.00 0.00 46.51 4.02
449 450 8.281893 GGTACAATTCATTTGTTTTTCATGTGG 58.718 33.333 0.00 0.00 46.51 4.17
450 451 8.824781 TGGTACAATTCATTTGTTTTTCATGTG 58.175 29.630 0.00 0.00 46.51 3.21
451 452 8.954950 TGGTACAATTCATTTGTTTTTCATGT 57.045 26.923 0.00 0.00 46.51 3.21
452 453 9.866936 CTTGGTACAATTCATTTGTTTTTCATG 57.133 29.630 0.00 0.00 46.51 3.07
453 454 9.829507 TCTTGGTACAATTCATTTGTTTTTCAT 57.170 25.926 0.00 0.00 46.51 2.57
454 455 9.311916 CTCTTGGTACAATTCATTTGTTTTTCA 57.688 29.630 0.00 0.00 46.51 2.69
455 456 9.528018 TCTCTTGGTACAATTCATTTGTTTTTC 57.472 29.630 0.00 0.00 46.51 2.29
459 460 9.480053 CAAATCTCTTGGTACAATTCATTTGTT 57.520 29.630 0.00 0.00 46.51 2.83
470 471 5.248248 TCATCCACTCAAATCTCTTGGTACA 59.752 40.000 0.00 0.00 0.00 2.90
471 472 5.734720 TCATCCACTCAAATCTCTTGGTAC 58.265 41.667 0.00 0.00 0.00 3.34
472 473 6.373005 TTCATCCACTCAAATCTCTTGGTA 57.627 37.500 0.00 0.00 0.00 3.25
473 474 4.916041 TCATCCACTCAAATCTCTTGGT 57.084 40.909 0.00 0.00 0.00 3.67
474 475 5.105997 GGTTTCATCCACTCAAATCTCTTGG 60.106 44.000 0.00 0.00 0.00 3.61
475 476 5.105997 GGGTTTCATCCACTCAAATCTCTTG 60.106 44.000 0.00 0.00 0.00 3.02
476 477 5.012893 GGGTTTCATCCACTCAAATCTCTT 58.987 41.667 0.00 0.00 0.00 2.85
477 478 4.568592 GGGGTTTCATCCACTCAAATCTCT 60.569 45.833 0.00 0.00 0.00 3.10
478 479 3.696548 GGGGTTTCATCCACTCAAATCTC 59.303 47.826 0.00 0.00 0.00 2.75
479 480 3.564352 GGGGGTTTCATCCACTCAAATCT 60.564 47.826 0.00 0.00 0.00 2.40
480 481 2.760650 GGGGGTTTCATCCACTCAAATC 59.239 50.000 0.00 0.00 0.00 2.17
481 482 2.820178 GGGGGTTTCATCCACTCAAAT 58.180 47.619 0.00 0.00 0.00 2.32
482 483 2.302587 GGGGGTTTCATCCACTCAAA 57.697 50.000 0.00 0.00 0.00 2.69
498 499 1.272425 TGCAGTCCATTTTGTAGGGGG 60.272 52.381 0.00 0.00 0.00 5.40
499 500 2.214376 TGCAGTCCATTTTGTAGGGG 57.786 50.000 0.00 0.00 0.00 4.79
500 501 3.614870 GCTTTGCAGTCCATTTTGTAGGG 60.615 47.826 0.00 0.00 0.00 3.53
501 502 3.005684 TGCTTTGCAGTCCATTTTGTAGG 59.994 43.478 0.00 0.00 33.32 3.18
502 503 4.241590 TGCTTTGCAGTCCATTTTGTAG 57.758 40.909 0.00 0.00 33.32 2.74
503 504 4.662468 TTGCTTTGCAGTCCATTTTGTA 57.338 36.364 0.00 0.00 40.61 2.41
504 505 3.540314 TTGCTTTGCAGTCCATTTTGT 57.460 38.095 0.00 0.00 40.61 2.83
505 506 4.753107 AGAATTGCTTTGCAGTCCATTTTG 59.247 37.500 0.00 0.00 40.61 2.44
506 507 4.964593 AGAATTGCTTTGCAGTCCATTTT 58.035 34.783 0.00 0.00 40.61 1.82
507 508 4.612264 AGAATTGCTTTGCAGTCCATTT 57.388 36.364 0.00 0.00 40.61 2.32
508 509 4.612264 AAGAATTGCTTTGCAGTCCATT 57.388 36.364 0.00 0.00 40.61 3.16
509 510 4.159135 CCTAAGAATTGCTTTGCAGTCCAT 59.841 41.667 0.00 0.00 40.61 3.41
510 511 3.507233 CCTAAGAATTGCTTTGCAGTCCA 59.493 43.478 0.00 0.00 40.61 4.02
511 512 3.758554 TCCTAAGAATTGCTTTGCAGTCC 59.241 43.478 0.00 0.00 40.61 3.85
512 513 4.457257 ACTCCTAAGAATTGCTTTGCAGTC 59.543 41.667 0.00 0.00 40.61 3.51
513 514 4.401925 ACTCCTAAGAATTGCTTTGCAGT 58.598 39.130 0.00 0.00 40.61 4.40
514 515 5.382618 AACTCCTAAGAATTGCTTTGCAG 57.617 39.130 0.00 0.00 40.61 4.41
515 516 5.789643 AAACTCCTAAGAATTGCTTTGCA 57.210 34.783 0.00 0.00 38.05 4.08
516 517 5.635280 GGAAAACTCCTAAGAATTGCTTTGC 59.365 40.000 0.00 0.00 38.05 3.68
517 518 6.986250 AGGAAAACTCCTAAGAATTGCTTTG 58.014 36.000 0.00 0.00 38.58 2.77
518 519 8.706322 TTAGGAAAACTCCTAAGAATTGCTTT 57.294 30.769 9.15 0.00 44.75 3.51
531 532 9.847224 TGTATGATAAATCCTTAGGAAAACTCC 57.153 33.333 4.56 0.00 34.34 3.85
581 582 9.768215 TTTAGGATTCAGATTCATAGGGTTTTT 57.232 29.630 0.00 0.00 0.00 1.94
582 583 9.768215 TTTTAGGATTCAGATTCATAGGGTTTT 57.232 29.630 0.00 0.00 0.00 2.43
583 584 9.768215 TTTTTAGGATTCAGATTCATAGGGTTT 57.232 29.630 0.00 0.00 0.00 3.27
612 613 9.736023 GCTCTTTAATTCAAACGAATTCCATAT 57.264 29.630 3.81 0.00 41.22 1.78
613 614 8.188139 GGCTCTTTAATTCAAACGAATTCCATA 58.812 33.333 3.81 0.00 41.22 2.74
614 615 7.035612 GGCTCTTTAATTCAAACGAATTCCAT 58.964 34.615 3.81 0.00 41.22 3.41
615 616 6.015856 TGGCTCTTTAATTCAAACGAATTCCA 60.016 34.615 3.81 2.59 41.22 3.53
631 632 6.237901 TGCTCTAACTTTTCATGGCTCTTTA 58.762 36.000 0.00 0.00 0.00 1.85
633 634 4.655963 TGCTCTAACTTTTCATGGCTCTT 58.344 39.130 0.00 0.00 0.00 2.85
637 638 4.860907 CACATTGCTCTAACTTTTCATGGC 59.139 41.667 0.00 0.00 0.00 4.40
654 655 3.443045 GGCCGTCCCAGCACATTG 61.443 66.667 0.00 0.00 0.00 2.82
655 656 3.965258 TGGCCGTCCCAGCACATT 61.965 61.111 0.00 0.00 39.18 2.71
734 740 1.081108 AGCTGCTTCACGTCTCGAC 60.081 57.895 0.00 0.00 0.00 4.20
768 774 3.512516 GGACTGCTGGCGAATGGC 61.513 66.667 0.00 0.00 42.51 4.40
809 815 1.187271 CGATCGATTTTGTAGGCGTCG 59.813 52.381 10.26 0.00 0.00 5.12
817 823 0.035439 AGGGTGCCGATCGATTTTGT 60.035 50.000 18.66 0.00 0.00 2.83
863 870 4.348495 GGTGGGGGAGGGGAGACA 62.348 72.222 0.00 0.00 0.00 3.41
922 930 1.982958 GGGGAATAAATAGGAGGCGGA 59.017 52.381 0.00 0.00 0.00 5.54
1009 1018 1.540435 GGATGGGAGATCGGAGAGGC 61.540 65.000 0.00 0.00 43.63 4.70
1270 1280 1.941734 GAAGTCCTGCGCGATCTCG 60.942 63.158 12.10 0.00 43.27 4.04
1473 1483 4.742201 ACACCTAGCAGTGCGGCG 62.742 66.667 10.00 0.51 41.67 6.46
1476 1486 1.732259 CCTAAAACACCTAGCAGTGCG 59.268 52.381 10.00 0.00 41.67 5.34
1477 1487 1.468914 GCCTAAAACACCTAGCAGTGC 59.531 52.381 7.13 7.13 41.67 4.40
1480 1490 2.633488 GGAGCCTAAAACACCTAGCAG 58.367 52.381 0.00 0.00 0.00 4.24
1496 1506 3.692406 ACGACGGGAACAGGGAGC 61.692 66.667 0.00 0.00 0.00 4.70
1497 1507 2.095978 AACACGACGGGAACAGGGAG 62.096 60.000 2.90 0.00 0.00 4.30
1500 1510 1.666872 GGAACACGACGGGAACAGG 60.667 63.158 2.90 0.00 0.00 4.00
1531 1541 3.375299 GCAACAAGCCAGTTACATAGGAG 59.625 47.826 0.00 0.00 37.23 3.69
1570 1580 8.758829 TGGTAGCCATATTTCATCGATATAAGT 58.241 33.333 0.00 0.00 0.00 2.24
1579 1589 5.809001 TCATCCTGGTAGCCATATTTCATC 58.191 41.667 0.00 0.00 30.82 2.92
1630 1646 2.508526 GGTGGAGACAAGCACAGAAAT 58.491 47.619 0.00 0.00 46.06 2.17
1673 1689 1.324383 TACAGAACGCCTGACAGACA 58.676 50.000 3.32 0.00 45.78 3.41
1687 1703 6.340522 TCGAAAGATGCATTCAGATTACAGA 58.659 36.000 0.00 0.00 33.31 3.41
1688 1704 6.594284 TCGAAAGATGCATTCAGATTACAG 57.406 37.500 0.00 0.00 33.31 2.74
1689 1705 6.983474 TTCGAAAGATGCATTCAGATTACA 57.017 33.333 0.00 0.00 41.60 2.41
1690 1706 6.854892 CCATTCGAAAGATGCATTCAGATTAC 59.145 38.462 0.00 0.00 41.60 1.89
1691 1707 6.767423 TCCATTCGAAAGATGCATTCAGATTA 59.233 34.615 0.00 0.00 41.60 1.75
1692 1708 5.591472 TCCATTCGAAAGATGCATTCAGATT 59.409 36.000 0.00 0.00 41.60 2.40
1693 1709 5.128205 TCCATTCGAAAGATGCATTCAGAT 58.872 37.500 0.00 0.00 41.60 2.90
1717 1733 7.328249 CAGCCGCAATTTTAATTTTGAAGTAGA 59.672 33.333 0.00 0.00 0.00 2.59
1720 1736 5.179182 CCAGCCGCAATTTTAATTTTGAAGT 59.821 36.000 0.00 0.00 0.00 3.01
1721 1737 5.179182 ACCAGCCGCAATTTTAATTTTGAAG 59.821 36.000 0.00 0.00 0.00 3.02
1722 1738 5.049818 CACCAGCCGCAATTTTAATTTTGAA 60.050 36.000 0.00 0.00 0.00 2.69
1723 1739 4.450419 CACCAGCCGCAATTTTAATTTTGA 59.550 37.500 0.00 0.00 0.00 2.69
1724 1740 4.213059 ACACCAGCCGCAATTTTAATTTTG 59.787 37.500 0.00 0.00 0.00 2.44
1725 1741 4.213059 CACACCAGCCGCAATTTTAATTTT 59.787 37.500 0.00 0.00 0.00 1.82
1726 1742 3.745458 CACACCAGCCGCAATTTTAATTT 59.255 39.130 0.00 0.00 0.00 1.82
1727 1743 3.324993 CACACCAGCCGCAATTTTAATT 58.675 40.909 0.00 0.00 0.00 1.40
1728 1744 2.353605 CCACACCAGCCGCAATTTTAAT 60.354 45.455 0.00 0.00 0.00 1.40
1746 1762 1.247567 CCCACACAGAAATCACCCAC 58.752 55.000 0.00 0.00 0.00 4.61
1748 1764 1.613437 CAACCCACACAGAAATCACCC 59.387 52.381 0.00 0.00 0.00 4.61
1761 1777 4.454161 GGTTCAATATTTTTGCCAACCCAC 59.546 41.667 0.00 0.00 0.00 4.61
1764 1780 5.546526 TCTGGTTCAATATTTTTGCCAACC 58.453 37.500 0.00 0.00 33.73 3.77
1766 1782 5.237048 GCTCTGGTTCAATATTTTTGCCAA 58.763 37.500 0.00 0.00 0.00 4.52
1770 1786 5.865552 CACAGGCTCTGGTTCAATATTTTTG 59.134 40.000 7.06 0.00 35.51 2.44
1772 1788 5.324409 TCACAGGCTCTGGTTCAATATTTT 58.676 37.500 7.06 0.00 35.51 1.82
1773 1789 4.922206 TCACAGGCTCTGGTTCAATATTT 58.078 39.130 7.06 0.00 35.51 1.40
1775 1791 4.574674 TTCACAGGCTCTGGTTCAATAT 57.425 40.909 7.06 0.00 35.51 1.28
1777 1793 2.957402 TTCACAGGCTCTGGTTCAAT 57.043 45.000 7.06 0.00 35.51 2.57
1780 1796 2.421619 CTCTTTCACAGGCTCTGGTTC 58.578 52.381 7.06 0.00 35.51 3.62
1781 1797 1.072965 CCTCTTTCACAGGCTCTGGTT 59.927 52.381 7.06 0.00 35.51 3.67
1782 1798 0.689623 CCTCTTTCACAGGCTCTGGT 59.310 55.000 7.06 0.00 35.51 4.00
1783 1799 0.979665 TCCTCTTTCACAGGCTCTGG 59.020 55.000 7.06 0.00 35.51 3.86
1797 1861 8.409358 AACTGCAAATAAATTACAACTCCTCT 57.591 30.769 0.00 0.00 0.00 3.69
1801 1865 7.509797 GCCAAACTGCAAATAAATTACAACTC 58.490 34.615 0.00 0.00 0.00 3.01
1804 1868 5.986135 ACGCCAAACTGCAAATAAATTACAA 59.014 32.000 0.00 0.00 0.00 2.41
1805 1869 5.533482 ACGCCAAACTGCAAATAAATTACA 58.467 33.333 0.00 0.00 0.00 2.41
1806 1870 5.219951 CGACGCCAAACTGCAAATAAATTAC 60.220 40.000 0.00 0.00 0.00 1.89
1829 1893 7.294676 TCAGACTGATTTAATCACAACATCG 57.705 36.000 3.20 0.00 35.06 3.84
1847 1911 4.841246 AGGAAGTGAGGTTTGTATCAGACT 59.159 41.667 0.00 0.00 0.00 3.24
1848 1912 5.153950 AGGAAGTGAGGTTTGTATCAGAC 57.846 43.478 0.00 0.00 0.00 3.51
1849 1913 8.603898 TTATAGGAAGTGAGGTTTGTATCAGA 57.396 34.615 0.00 0.00 0.00 3.27
1850 1914 7.439655 GCTTATAGGAAGTGAGGTTTGTATCAG 59.560 40.741 0.00 0.00 0.00 2.90
1851 1915 7.272978 GCTTATAGGAAGTGAGGTTTGTATCA 58.727 38.462 0.00 0.00 0.00 2.15
1852 1916 6.706716 GGCTTATAGGAAGTGAGGTTTGTATC 59.293 42.308 0.00 0.00 0.00 2.24
1853 1917 6.387220 AGGCTTATAGGAAGTGAGGTTTGTAT 59.613 38.462 0.00 0.00 0.00 2.29
1854 1918 5.724854 AGGCTTATAGGAAGTGAGGTTTGTA 59.275 40.000 0.00 0.00 0.00 2.41
1865 1956 6.183360 TGCTTCTCTTGTAGGCTTATAGGAAG 60.183 42.308 0.00 2.10 0.00 3.46
1866 1957 5.661312 TGCTTCTCTTGTAGGCTTATAGGAA 59.339 40.000 0.00 0.00 0.00 3.36
1901 1993 8.999431 ACTGTACTACATTGTACCAAAAGAATG 58.001 33.333 0.00 0.00 41.34 2.67
1955 2048 8.029522 TGACTTACACTGCAATCTAAGAACTAG 58.970 37.037 0.00 0.00 0.00 2.57
1971 2064 7.889873 AGAGTATAAGCAGATGACTTACACT 57.110 36.000 7.31 7.31 39.45 3.55
2035 2129 7.805163 TGGATTCAGAAAGCCTAATATTCAGA 58.195 34.615 0.00 0.00 41.71 3.27
2050 2144 5.879763 TCAACCTCAATCTTGGATTCAGAA 58.120 37.500 0.00 0.00 0.00 3.02
2051 2145 5.503634 TCAACCTCAATCTTGGATTCAGA 57.496 39.130 0.00 0.00 0.00 3.27
2052 2146 6.579666 TTTCAACCTCAATCTTGGATTCAG 57.420 37.500 0.00 0.00 0.00 3.02
2078 2172 0.392193 AGAAGCAATCCAGCAGACCG 60.392 55.000 0.00 0.00 36.85 4.79
2083 2177 1.614903 CAAACCAGAAGCAATCCAGCA 59.385 47.619 0.00 0.00 36.85 4.41
2088 2182 3.054878 CAAGCACAAACCAGAAGCAATC 58.945 45.455 0.00 0.00 0.00 2.67
2090 2184 1.471327 GCAAGCACAAACCAGAAGCAA 60.471 47.619 0.00 0.00 0.00 3.91
2092 2186 0.386838 AGCAAGCACAAACCAGAAGC 59.613 50.000 0.00 0.00 0.00 3.86
2154 2248 5.923204 ACAATTTTTGTGGCCTTGATGTTA 58.077 33.333 3.32 0.00 43.48 2.41
2201 2295 3.441572 GCAAACACATTCCAGCTACTCAT 59.558 43.478 0.00 0.00 0.00 2.90
2209 2303 2.624838 AGTTCCTGCAAACACATTCCAG 59.375 45.455 4.19 0.00 0.00 3.86
2293 2387 7.209475 GGAAATGATCAGGTTTGAACTTCAAA 58.791 34.615 12.12 12.12 43.37 2.69
2296 2390 5.243730 TGGGAAATGATCAGGTTTGAACTTC 59.756 40.000 0.09 0.00 36.78 3.01
2299 2393 4.619160 GCTGGGAAATGATCAGGTTTGAAC 60.619 45.833 0.09 0.00 36.78 3.18
2300 2394 3.511146 GCTGGGAAATGATCAGGTTTGAA 59.489 43.478 0.09 0.00 36.78 2.69
2331 2437 6.320418 TGCAGATGATTGATCAAAATAGCAGT 59.680 34.615 13.09 0.00 40.69 4.40
2367 2473 6.816134 TGTTGCTTAAAATGCTATCACAGA 57.184 33.333 0.00 0.00 0.00 3.41
2369 2475 7.377398 ACAATGTTGCTTAAAATGCTATCACA 58.623 30.769 0.00 0.00 0.00 3.58
2478 2584 6.822676 GCAGCAAAGAAGATGATAGCCTATAT 59.177 38.462 0.00 0.00 0.00 0.86
2481 2587 4.102210 AGCAGCAAAGAAGATGATAGCCTA 59.898 41.667 0.00 0.00 0.00 3.93
2510 2616 2.094286 AGAGCATGTGGAGAAGAGAACG 60.094 50.000 0.00 0.00 0.00 3.95
2549 2655 1.603802 CATGCTTGTCGTGGAAACAGT 59.396 47.619 0.00 0.00 44.46 3.55
2569 2675 5.915196 GGCAGAACTTACTGTTTCAATCAAC 59.085 40.000 0.00 0.00 39.30 3.18
2580 2686 5.468072 GTGGATATGATGGCAGAACTTACTG 59.532 44.000 0.00 0.00 40.43 2.74
2581 2687 5.130975 TGTGGATATGATGGCAGAACTTACT 59.869 40.000 0.00 0.00 0.00 2.24


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.