Multiple sequence alignment - TraesCS6A01G148200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G148200 chr6A 100.000 2654 0 0 1 2654 129339881 129342534 0.000000e+00 4902.0
1 TraesCS6A01G148200 chr6D 95.925 1546 41 8 709 2241 106079617 106081153 0.000000e+00 2486.0
2 TraesCS6A01G148200 chr6D 83.502 297 40 7 2267 2559 41542630 41542339 4.350000e-68 268.0
3 TraesCS6A01G148200 chr6D 91.406 128 11 0 82 209 42515934 42516061 2.720000e-40 176.0
4 TraesCS6A01G148200 chr6B 95.968 992 28 3 715 1705 192925922 192926902 0.000000e+00 1600.0
5 TraesCS6A01G148200 chr6B 93.738 511 21 4 1720 2221 192931262 192931770 0.000000e+00 756.0
6 TraesCS6A01G148200 chr7A 87.308 717 76 9 978 1686 251254153 251253444 0.000000e+00 806.0
7 TraesCS6A01G148200 chr7A 92.308 377 23 3 221 596 9156124 9155753 5.030000e-147 531.0
8 TraesCS6A01G148200 chr7A 91.821 379 28 3 220 596 602423549 602423172 2.340000e-145 525.0
9 TraesCS6A01G148200 chr7A 93.909 197 12 0 3 199 34082704 34082508 5.550000e-77 298.0
10 TraesCS6A01G148200 chr7B 83.484 884 112 19 817 1686 212419368 212418505 0.000000e+00 793.0
11 TraesCS6A01G148200 chr7B 82.759 290 41 7 2268 2555 529611857 529611575 1.580000e-62 250.0
12 TraesCS6A01G148200 chr7B 81.185 287 44 9 2272 2553 382277411 382277130 3.440000e-54 222.0
13 TraesCS6A01G148200 chr7D 86.192 717 84 9 978 1686 236010780 236010071 0.000000e+00 761.0
14 TraesCS6A01G148200 chr4A 94.400 375 19 1 219 593 188749440 188749068 2.290000e-160 575.0
15 TraesCS6A01G148200 chr4A 93.834 373 21 2 221 593 379457222 379457592 6.420000e-156 560.0
16 TraesCS6A01G148200 chr4A 92.761 373 25 2 225 596 551327395 551327024 3.010000e-149 538.0
17 TraesCS6A01G148200 chr4A 94.737 209 11 0 1 209 295261086 295260878 2.550000e-85 326.0
18 TraesCS6A01G148200 chr4A 86.111 288 26 13 2267 2546 92740992 92741273 5.550000e-77 298.0
19 TraesCS6A01G148200 chr3A 94.609 371 18 2 221 591 555446197 555445829 8.240000e-160 573.0
20 TraesCS6A01G148200 chr3A 91.457 199 17 0 1 199 336050106 336049908 9.360000e-70 274.0
21 TraesCS6A01G148200 chr3A 81.481 108 19 1 603 710 62437682 62437788 1.310000e-13 87.9
22 TraesCS6A01G148200 chr5A 92.593 378 26 2 221 596 203869594 203869217 2.320000e-150 542.0
23 TraesCS6A01G148200 chr5A 92.500 200 15 0 1 200 662357008 662357207 1.200000e-73 287.0
24 TraesCS6A01G148200 chr5A 75.049 513 105 17 1166 1656 321328886 321328375 1.600000e-52 217.0
25 TraesCS6A01G148200 chr1A 92.308 377 26 3 221 596 454355203 454355577 1.400000e-147 532.0
26 TraesCS6A01G148200 chr1A 83.107 515 61 13 1 491 50524896 50524384 1.870000e-121 446.0
27 TraesCS6A01G148200 chr2A 92.042 377 28 2 219 594 30697072 30697447 1.810000e-146 529.0
28 TraesCS6A01G148200 chr2A 91.878 197 14 2 6 202 529723575 529723769 9.360000e-70 274.0
29 TraesCS6A01G148200 chr2A 90.099 202 17 3 1 202 529709577 529709775 2.620000e-65 259.0
30 TraesCS6A01G148200 chr2A 80.363 331 50 8 2234 2551 545171244 545171572 1.230000e-58 237.0
31 TraesCS6A01G148200 chr5B 82.986 288 44 4 2267 2552 407219534 407219250 3.390000e-64 255.0
32 TraesCS6A01G148200 chr5B 87.719 114 13 1 597 710 651222063 651221951 5.960000e-27 132.0
33 TraesCS6A01G148200 chr5B 85.556 90 12 1 622 711 181558901 181558989 2.810000e-15 93.5
34 TraesCS6A01G148200 chrUn 86.192 239 23 6 2267 2503 243337306 243337536 1.580000e-62 250.0
35 TraesCS6A01G148200 chrUn 86.192 239 23 6 2267 2503 248708711 248708941 1.580000e-62 250.0
36 TraesCS6A01G148200 chrUn 82.353 119 19 2 597 715 291743836 291743952 4.670000e-18 102.0
37 TraesCS6A01G148200 chr3B 81.404 285 49 4 2271 2552 545070577 545070294 2.050000e-56 230.0
38 TraesCS6A01G148200 chr3B 83.636 110 16 2 609 718 805128814 805128707 4.670000e-18 102.0
39 TraesCS6A01G148200 chr3B 83.333 108 14 3 1879 1983 673169695 673169589 2.170000e-16 97.1
40 TraesCS6A01G148200 chr3D 91.406 128 11 0 82 209 100201152 100201025 2.720000e-40 176.0
41 TraesCS6A01G148200 chr2B 86.441 118 15 1 597 714 227685208 227685092 7.710000e-26 128.0
42 TraesCS6A01G148200 chr4B 83.761 117 17 2 595 710 364488629 364488514 2.790000e-20 110.0
43 TraesCS6A01G148200 chr1B 82.301 113 15 4 597 707 569767163 569767272 2.810000e-15 93.5
44 TraesCS6A01G148200 chr5D 79.832 119 22 2 597 715 379969416 379969300 4.710000e-13 86.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G148200 chr6A 129339881 129342534 2653 False 4902 4902 100.000 1 2654 1 chr6A.!!$F1 2653
1 TraesCS6A01G148200 chr6D 106079617 106081153 1536 False 2486 2486 95.925 709 2241 1 chr6D.!!$F2 1532
2 TraesCS6A01G148200 chr6B 192925922 192926902 980 False 1600 1600 95.968 715 1705 1 chr6B.!!$F1 990
3 TraesCS6A01G148200 chr6B 192931262 192931770 508 False 756 756 93.738 1720 2221 1 chr6B.!!$F2 501
4 TraesCS6A01G148200 chr7A 251253444 251254153 709 True 806 806 87.308 978 1686 1 chr7A.!!$R3 708
5 TraesCS6A01G148200 chr7B 212418505 212419368 863 True 793 793 83.484 817 1686 1 chr7B.!!$R1 869
6 TraesCS6A01G148200 chr7D 236010071 236010780 709 True 761 761 86.192 978 1686 1 chr7D.!!$R1 708
7 TraesCS6A01G148200 chr5A 321328375 321328886 511 True 217 217 75.049 1166 1656 1 chr5A.!!$R2 490
8 TraesCS6A01G148200 chr1A 50524384 50524896 512 True 446 446 83.107 1 491 1 chr1A.!!$R1 490

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
832 857 1.077429 GGGGATGTCACTGGCTTCC 60.077 63.158 6.97 6.97 0.0 3.46 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2095 2174 2.170397 TGGAAAGCGATCTAAGCCATGA 59.83 45.455 0.0 0.0 34.64 3.07 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
80 83 3.610677 CGAGTCACATTGTGCGTACATAA 59.389 43.478 7.30 0.00 36.53 1.90
86 89 9.489084 AGTCACATTGTGCGTACATAATATATT 57.511 29.630 7.30 2.97 35.64 1.28
130 133 6.604795 CCATTCTCTCTCCACCAATTAATGTT 59.395 38.462 0.00 0.00 0.00 2.71
133 136 5.415701 TCTCTCTCCACCAATTAATGTTTGC 59.584 40.000 0.00 0.00 0.00 3.68
134 137 4.462483 TCTCTCCACCAATTAATGTTTGCC 59.538 41.667 0.00 0.00 0.00 4.52
202 206 2.435372 TTAAATGCTAGGTGCCTGGG 57.565 50.000 0.12 0.00 42.00 4.45
237 261 4.422073 AAATGCTATTCGTCATCCTGGA 57.578 40.909 0.00 0.00 0.00 3.86
264 288 8.785329 GATGAATAGTTATTCTTCATCCCCTC 57.215 38.462 16.66 0.00 44.77 4.30
273 297 9.061435 GTTATTCTTCATCCCCTCTCTATTTTG 57.939 37.037 0.00 0.00 0.00 2.44
274 298 6.891306 TTCTTCATCCCCTCTCTATTTTGA 57.109 37.500 0.00 0.00 0.00 2.69
287 311 5.945191 TCTCTATTTTGACATCAATGCACCA 59.055 36.000 0.00 0.00 35.55 4.17
290 314 8.467963 TCTATTTTGACATCAATGCACCATAT 57.532 30.769 0.00 0.00 35.55 1.78
296 320 9.964303 TTTGACATCAATGCACCATATTTATAC 57.036 29.630 0.00 0.00 35.55 1.47
300 324 8.629158 ACATCAATGCACCATATTTATACGTTT 58.371 29.630 0.00 0.00 0.00 3.60
306 330 8.194433 TGCACCATATTTATACGTTTCGTAAA 57.806 30.769 0.00 0.00 45.39 2.01
321 345 9.719279 ACGTTTCGTAAATTTTGTCTTATTTCA 57.281 25.926 0.00 0.00 38.73 2.69
551 576 9.901172 ATTTAGGAAACGAACATAAGATTACCT 57.099 29.630 0.00 0.00 0.00 3.08
552 577 8.937634 TTAGGAAACGAACATAAGATTACCTC 57.062 34.615 0.00 0.00 0.00 3.85
553 578 6.040878 AGGAAACGAACATAAGATTACCTCG 58.959 40.000 0.00 0.00 0.00 4.63
554 579 5.233689 GGAAACGAACATAAGATTACCTCGG 59.766 44.000 0.00 0.00 0.00 4.63
555 580 4.317671 ACGAACATAAGATTACCTCGGG 57.682 45.455 0.00 0.00 0.00 5.14
556 581 3.703052 ACGAACATAAGATTACCTCGGGT 59.297 43.478 0.00 1.14 40.16 5.28
557 582 4.049186 CGAACATAAGATTACCTCGGGTG 58.951 47.826 5.90 0.00 36.19 4.61
558 583 4.202080 CGAACATAAGATTACCTCGGGTGA 60.202 45.833 5.90 0.00 36.19 4.02
559 584 5.667466 GAACATAAGATTACCTCGGGTGAA 58.333 41.667 5.90 0.00 36.19 3.18
560 585 5.687166 ACATAAGATTACCTCGGGTGAAA 57.313 39.130 5.90 0.00 36.19 2.69
561 586 6.057321 ACATAAGATTACCTCGGGTGAAAA 57.943 37.500 5.90 0.00 36.19 2.29
562 587 6.478129 ACATAAGATTACCTCGGGTGAAAAA 58.522 36.000 5.90 0.00 36.19 1.94
563 588 7.116736 ACATAAGATTACCTCGGGTGAAAAAT 58.883 34.615 5.90 0.00 36.19 1.82
564 589 8.269317 ACATAAGATTACCTCGGGTGAAAAATA 58.731 33.333 5.90 0.00 36.19 1.40
565 590 9.116067 CATAAGATTACCTCGGGTGAAAAATAA 57.884 33.333 5.90 0.00 36.19 1.40
566 591 6.997239 AGATTACCTCGGGTGAAAAATAAC 57.003 37.500 5.90 0.00 36.19 1.89
567 592 6.718294 AGATTACCTCGGGTGAAAAATAACT 58.282 36.000 5.90 0.00 36.19 2.24
568 593 7.173032 AGATTACCTCGGGTGAAAAATAACTT 58.827 34.615 5.90 0.00 36.19 2.66
569 594 8.323567 AGATTACCTCGGGTGAAAAATAACTTA 58.676 33.333 5.90 0.00 36.19 2.24
570 595 9.117183 GATTACCTCGGGTGAAAAATAACTTAT 57.883 33.333 5.90 0.00 36.19 1.73
571 596 8.866970 TTACCTCGGGTGAAAAATAACTTATT 57.133 30.769 5.90 0.00 36.19 1.40
572 597 7.770366 ACCTCGGGTGAAAAATAACTTATTT 57.230 32.000 1.48 1.48 35.69 1.40
573 598 8.185506 ACCTCGGGTGAAAAATAACTTATTTT 57.814 30.769 12.06 12.06 41.03 1.82
574 599 8.085909 ACCTCGGGTGAAAAATAACTTATTTTG 58.914 33.333 16.74 6.77 39.71 2.44
575 600 8.085909 CCTCGGGTGAAAAATAACTTATTTTGT 58.914 33.333 16.74 9.46 44.98 2.83
577 602 9.896263 TCGGGTGAAAAATAACTTATTTTGTAC 57.104 29.630 16.74 16.62 44.98 2.90
578 603 9.131416 CGGGTGAAAAATAACTTATTTTGTACC 57.869 33.333 24.93 24.93 44.98 3.34
583 608 9.647797 GAAAAATAACTTATTTTGTACCCTGGG 57.352 33.333 12.28 12.28 44.98 4.45
584 609 8.730093 AAAATAACTTATTTTGTACCCTGGGT 57.270 30.769 24.15 24.15 44.29 4.51
585 610 7.712204 AATAACTTATTTTGTACCCTGGGTG 57.288 36.000 28.64 10.45 36.19 4.61
586 611 5.327737 AACTTATTTTGTACCCTGGGTGA 57.672 39.130 28.64 11.95 36.19 4.02
587 612 5.530176 ACTTATTTTGTACCCTGGGTGAT 57.470 39.130 28.64 15.15 36.19 3.06
588 613 5.261216 ACTTATTTTGTACCCTGGGTGATG 58.739 41.667 28.64 9.83 36.19 3.07
589 614 5.014755 ACTTATTTTGTACCCTGGGTGATGA 59.985 40.000 28.64 5.14 36.19 2.92
590 615 3.885976 TTTTGTACCCTGGGTGATGAA 57.114 42.857 28.64 14.38 36.19 2.57
591 616 4.396357 TTTTGTACCCTGGGTGATGAAT 57.604 40.909 28.64 1.34 36.19 2.57
592 617 5.522315 TTTTGTACCCTGGGTGATGAATA 57.478 39.130 28.64 3.01 36.19 1.75
593 618 4.771114 TTGTACCCTGGGTGATGAATAG 57.229 45.455 28.64 0.00 36.19 1.73
594 619 3.731431 TGTACCCTGGGTGATGAATAGT 58.269 45.455 28.64 0.00 36.19 2.12
595 620 4.886163 TGTACCCTGGGTGATGAATAGTA 58.114 43.478 28.64 0.50 36.19 1.82
596 621 4.652421 TGTACCCTGGGTGATGAATAGTAC 59.348 45.833 28.64 14.22 36.19 2.73
597 622 3.046374 ACCCTGGGTGATGAATAGTACC 58.954 50.000 19.82 0.00 32.98 3.34
602 627 3.662247 GGTGATGAATAGTACCCTCCG 57.338 52.381 0.00 0.00 0.00 4.63
603 628 2.963782 GGTGATGAATAGTACCCTCCGT 59.036 50.000 0.00 0.00 0.00 4.69
604 629 3.005578 GGTGATGAATAGTACCCTCCGTC 59.994 52.174 0.00 0.00 0.00 4.79
605 630 3.890147 GTGATGAATAGTACCCTCCGTCT 59.110 47.826 0.00 0.00 0.00 4.18
606 631 3.889538 TGATGAATAGTACCCTCCGTCTG 59.110 47.826 0.00 0.00 0.00 3.51
607 632 3.657398 TGAATAGTACCCTCCGTCTGA 57.343 47.619 0.00 0.00 0.00 3.27
608 633 3.972133 TGAATAGTACCCTCCGTCTGAA 58.028 45.455 0.00 0.00 0.00 3.02
609 634 4.346730 TGAATAGTACCCTCCGTCTGAAA 58.653 43.478 0.00 0.00 0.00 2.69
610 635 4.773674 TGAATAGTACCCTCCGTCTGAAAA 59.226 41.667 0.00 0.00 0.00 2.29
611 636 5.424252 TGAATAGTACCCTCCGTCTGAAAAT 59.576 40.000 0.00 0.00 0.00 1.82
612 637 6.608405 TGAATAGTACCCTCCGTCTGAAAATA 59.392 38.462 0.00 0.00 0.00 1.40
613 638 4.732672 AGTACCCTCCGTCTGAAAATAC 57.267 45.455 0.00 0.00 0.00 1.89
614 639 4.351127 AGTACCCTCCGTCTGAAAATACT 58.649 43.478 0.00 0.00 0.00 2.12
615 640 3.889520 ACCCTCCGTCTGAAAATACTC 57.110 47.619 0.00 0.00 0.00 2.59
616 641 2.165845 ACCCTCCGTCTGAAAATACTCG 59.834 50.000 0.00 0.00 0.00 4.18
617 642 2.165845 CCCTCCGTCTGAAAATACTCGT 59.834 50.000 0.00 0.00 0.00 4.18
618 643 3.436496 CCTCCGTCTGAAAATACTCGTC 58.564 50.000 0.00 0.00 0.00 4.20
619 644 3.099362 CTCCGTCTGAAAATACTCGTCG 58.901 50.000 0.00 0.00 0.00 5.12
620 645 2.743664 TCCGTCTGAAAATACTCGTCGA 59.256 45.455 0.00 0.00 0.00 4.20
621 646 3.189080 TCCGTCTGAAAATACTCGTCGAA 59.811 43.478 0.00 0.00 0.00 3.71
622 647 3.916172 CCGTCTGAAAATACTCGTCGAAA 59.084 43.478 0.00 0.00 0.00 3.46
623 648 4.383649 CCGTCTGAAAATACTCGTCGAAAA 59.616 41.667 0.00 0.00 0.00 2.29
624 649 5.107760 CCGTCTGAAAATACTCGTCGAAAAA 60.108 40.000 0.00 0.00 0.00 1.94
697 722 6.867662 ATTTCTCCTGATAAGTATTTGCGG 57.132 37.500 0.00 0.00 0.00 5.69
698 723 5.607939 TTCTCCTGATAAGTATTTGCGGA 57.392 39.130 0.00 0.00 0.00 5.54
699 724 5.808366 TCTCCTGATAAGTATTTGCGGAT 57.192 39.130 0.00 0.00 0.00 4.18
700 725 5.541845 TCTCCTGATAAGTATTTGCGGATG 58.458 41.667 0.00 0.00 0.00 3.51
701 726 4.641396 TCCTGATAAGTATTTGCGGATGG 58.359 43.478 0.00 0.00 0.00 3.51
702 727 4.346709 TCCTGATAAGTATTTGCGGATGGA 59.653 41.667 0.00 0.00 0.00 3.41
703 728 4.692625 CCTGATAAGTATTTGCGGATGGAG 59.307 45.833 0.00 0.00 0.00 3.86
704 729 4.641396 TGATAAGTATTTGCGGATGGAGG 58.359 43.478 0.00 0.00 0.00 4.30
705 730 2.348411 AAGTATTTGCGGATGGAGGG 57.652 50.000 0.00 0.00 0.00 4.30
706 731 1.507140 AGTATTTGCGGATGGAGGGA 58.493 50.000 0.00 0.00 0.00 4.20
707 732 1.417890 AGTATTTGCGGATGGAGGGAG 59.582 52.381 0.00 0.00 0.00 4.30
708 733 1.141053 GTATTTGCGGATGGAGGGAGT 59.859 52.381 0.00 0.00 0.00 3.85
709 734 1.507140 ATTTGCGGATGGAGGGAGTA 58.493 50.000 0.00 0.00 0.00 2.59
710 735 1.507140 TTTGCGGATGGAGGGAGTAT 58.493 50.000 0.00 0.00 0.00 2.12
759 784 7.199766 TGAATGACAATAACCAAGTGAACAAC 58.800 34.615 0.00 0.00 0.00 3.32
832 857 1.077429 GGGGATGTCACTGGCTTCC 60.077 63.158 6.97 6.97 0.00 3.46
1012 1044 1.304381 TTCACAATGGCCTCCCAGC 60.304 57.895 3.32 0.00 46.24 4.85
1309 1365 4.130554 TGCACAACCCCAACCGGT 62.131 61.111 0.00 0.00 37.93 5.28
1707 1766 1.133025 GAGCGTGATCAATGGTTTGGG 59.867 52.381 0.00 0.00 33.44 4.12
1715 1774 5.418840 GTGATCAATGGTTTGGGAGTTATGT 59.581 40.000 0.00 0.00 33.44 2.29
1877 1949 6.090358 CAGGCATTGAAGCAATCTTTTTACAG 59.910 38.462 0.00 0.00 31.05 2.74
1896 1968 9.489084 TTTTACAGCCACAATAGCTATATGTAG 57.511 33.333 6.68 8.08 38.95 2.74
1917 1989 7.946207 TGTAGGTTGACTGAATTTGCAATTTA 58.054 30.769 0.00 0.00 0.00 1.40
2093 2172 0.890996 CTGCTCCACAAACCCAGGTC 60.891 60.000 0.00 0.00 0.00 3.85
2094 2173 1.352622 TGCTCCACAAACCCAGGTCT 61.353 55.000 0.00 0.00 0.00 3.85
2095 2174 0.178990 GCTCCACAAACCCAGGTCTT 60.179 55.000 0.00 0.00 0.00 3.01
2096 2175 1.897560 CTCCACAAACCCAGGTCTTC 58.102 55.000 0.00 0.00 0.00 2.87
2242 2321 8.702819 ACATACTCCCTTGTAAACTAATACTCC 58.297 37.037 0.00 0.00 0.00 3.85
2243 2322 8.701895 CATACTCCCTTGTAAACTAATACTCCA 58.298 37.037 0.00 0.00 0.00 3.86
2244 2323 7.750947 ACTCCCTTGTAAACTAATACTCCAT 57.249 36.000 0.00 0.00 0.00 3.41
2245 2324 7.793036 ACTCCCTTGTAAACTAATACTCCATC 58.207 38.462 0.00 0.00 0.00 3.51
2246 2325 6.812998 TCCCTTGTAAACTAATACTCCATCG 58.187 40.000 0.00 0.00 0.00 3.84
2247 2326 5.989777 CCCTTGTAAACTAATACTCCATCGG 59.010 44.000 0.00 0.00 0.00 4.18
2248 2327 6.407752 CCCTTGTAAACTAATACTCCATCGGT 60.408 42.308 0.00 0.00 0.00 4.69
2249 2328 7.046033 CCTTGTAAACTAATACTCCATCGGTT 58.954 38.462 0.00 0.00 0.00 4.44
2250 2329 7.224167 CCTTGTAAACTAATACTCCATCGGTTC 59.776 40.741 0.00 0.00 0.00 3.62
2251 2330 6.576185 TGTAAACTAATACTCCATCGGTTCC 58.424 40.000 0.00 0.00 0.00 3.62
2252 2331 5.952347 AAACTAATACTCCATCGGTTCCT 57.048 39.130 0.00 0.00 0.00 3.36
2253 2332 7.560991 TGTAAACTAATACTCCATCGGTTCCTA 59.439 37.037 0.00 0.00 0.00 2.94
2254 2333 7.427989 AAACTAATACTCCATCGGTTCCTAA 57.572 36.000 0.00 0.00 0.00 2.69
2255 2334 7.427989 AACTAATACTCCATCGGTTCCTAAA 57.572 36.000 0.00 0.00 0.00 1.85
2256 2335 7.613551 ACTAATACTCCATCGGTTCCTAAAT 57.386 36.000 0.00 0.00 0.00 1.40
2257 2336 8.716674 ACTAATACTCCATCGGTTCCTAAATA 57.283 34.615 0.00 0.00 0.00 1.40
2258 2337 8.583296 ACTAATACTCCATCGGTTCCTAAATAC 58.417 37.037 0.00 0.00 0.00 1.89
2259 2338 7.613551 AATACTCCATCGGTTCCTAAATACT 57.386 36.000 0.00 0.00 0.00 2.12
2260 2339 5.532664 ACTCCATCGGTTCCTAAATACTC 57.467 43.478 0.00 0.00 0.00 2.59
2261 2340 5.209659 ACTCCATCGGTTCCTAAATACTCT 58.790 41.667 0.00 0.00 0.00 3.24
2262 2341 5.302313 ACTCCATCGGTTCCTAAATACTCTC 59.698 44.000 0.00 0.00 0.00 3.20
2263 2342 5.455872 TCCATCGGTTCCTAAATACTCTCT 58.544 41.667 0.00 0.00 0.00 3.10
2264 2343 5.535406 TCCATCGGTTCCTAAATACTCTCTC 59.465 44.000 0.00 0.00 0.00 3.20
2265 2344 5.279056 CCATCGGTTCCTAAATACTCTCTCC 60.279 48.000 0.00 0.00 0.00 3.71
2266 2345 4.863548 TCGGTTCCTAAATACTCTCTCCA 58.136 43.478 0.00 0.00 0.00 3.86
2267 2346 5.455872 TCGGTTCCTAAATACTCTCTCCAT 58.544 41.667 0.00 0.00 0.00 3.41
2268 2347 6.607970 TCGGTTCCTAAATACTCTCTCCATA 58.392 40.000 0.00 0.00 0.00 2.74
2269 2348 7.064866 TCGGTTCCTAAATACTCTCTCCATAA 58.935 38.462 0.00 0.00 0.00 1.90
2270 2349 7.230913 TCGGTTCCTAAATACTCTCTCCATAAG 59.769 40.741 0.00 0.00 0.00 1.73
2271 2350 7.014422 CGGTTCCTAAATACTCTCTCCATAAGT 59.986 40.741 0.00 0.00 0.00 2.24
2272 2351 8.361889 GGTTCCTAAATACTCTCTCCATAAGTC 58.638 40.741 0.00 0.00 0.00 3.01
2273 2352 9.138596 GTTCCTAAATACTCTCTCCATAAGTCT 57.861 37.037 0.00 0.00 0.00 3.24
2274 2353 9.716556 TTCCTAAATACTCTCTCCATAAGTCTT 57.283 33.333 0.00 0.00 0.00 3.01
2275 2354 9.716556 TCCTAAATACTCTCTCCATAAGTCTTT 57.283 33.333 0.00 0.00 0.00 2.52
2276 2355 9.757227 CCTAAATACTCTCTCCATAAGTCTTTG 57.243 37.037 0.00 0.00 0.00 2.77
2280 2359 9.702253 AATACTCTCTCCATAAGTCTTTGTAGA 57.298 33.333 0.00 0.00 0.00 2.59
2281 2360 7.639113 ACTCTCTCCATAAGTCTTTGTAGAG 57.361 40.000 9.26 9.26 34.36 2.43
2282 2361 7.406916 ACTCTCTCCATAAGTCTTTGTAGAGA 58.593 38.462 13.90 13.90 36.72 3.10
2283 2362 8.058847 ACTCTCTCCATAAGTCTTTGTAGAGAT 58.941 37.037 14.49 7.61 37.99 2.75
2284 2363 8.830915 TCTCTCCATAAGTCTTTGTAGAGATT 57.169 34.615 12.08 0.00 34.75 2.40
2285 2364 8.908903 TCTCTCCATAAGTCTTTGTAGAGATTC 58.091 37.037 12.08 0.00 34.75 2.52
2286 2365 8.012957 TCTCCATAAGTCTTTGTAGAGATTCC 57.987 38.462 0.00 0.00 0.00 3.01
2287 2366 7.619698 TCTCCATAAGTCTTTGTAGAGATTCCA 59.380 37.037 0.00 0.00 0.00 3.53
2288 2367 7.556844 TCCATAAGTCTTTGTAGAGATTCCAC 58.443 38.462 0.00 0.00 0.00 4.02
2289 2368 7.400339 TCCATAAGTCTTTGTAGAGATTCCACT 59.600 37.037 0.00 0.00 0.00 4.00
2290 2369 8.696374 CCATAAGTCTTTGTAGAGATTCCACTA 58.304 37.037 0.00 0.00 0.00 2.74
2291 2370 9.743057 CATAAGTCTTTGTAGAGATTCCACTAG 57.257 37.037 0.00 0.00 0.00 2.57
2292 2371 6.783708 AGTCTTTGTAGAGATTCCACTAGG 57.216 41.667 0.00 0.00 0.00 3.02
2293 2372 6.257586 AGTCTTTGTAGAGATTCCACTAGGT 58.742 40.000 0.00 0.00 35.89 3.08
2294 2373 6.153680 AGTCTTTGTAGAGATTCCACTAGGTG 59.846 42.308 0.00 0.00 35.89 4.00
2295 2374 6.153000 GTCTTTGTAGAGATTCCACTAGGTGA 59.847 42.308 0.00 0.00 35.23 4.02
2296 2375 6.724441 TCTTTGTAGAGATTCCACTAGGTGAA 59.276 38.462 0.00 0.00 35.23 3.18
2297 2376 5.916661 TGTAGAGATTCCACTAGGTGAAC 57.083 43.478 0.00 0.00 35.23 3.18
2298 2377 5.580998 TGTAGAGATTCCACTAGGTGAACT 58.419 41.667 0.00 0.00 35.23 3.01
2299 2378 6.728411 TGTAGAGATTCCACTAGGTGAACTA 58.272 40.000 0.00 0.00 35.23 2.24
2300 2379 6.602406 TGTAGAGATTCCACTAGGTGAACTAC 59.398 42.308 0.00 5.54 35.23 2.73
2301 2380 5.580998 AGAGATTCCACTAGGTGAACTACA 58.419 41.667 0.00 0.00 35.23 2.74
2302 2381 6.198639 AGAGATTCCACTAGGTGAACTACAT 58.801 40.000 0.00 0.00 35.23 2.29
2303 2382 7.355101 AGAGATTCCACTAGGTGAACTACATA 58.645 38.462 0.00 0.00 35.23 2.29
2304 2383 7.285858 AGAGATTCCACTAGGTGAACTACATAC 59.714 40.741 0.00 0.00 35.23 2.39
2305 2384 5.571784 TTCCACTAGGTGAACTACATACG 57.428 43.478 0.00 0.00 35.23 3.06
2306 2385 3.949754 TCCACTAGGTGAACTACATACGG 59.050 47.826 0.00 0.00 35.23 4.02
2307 2386 3.949754 CCACTAGGTGAACTACATACGGA 59.050 47.826 0.00 0.00 35.23 4.69
2308 2387 4.036498 CCACTAGGTGAACTACATACGGAG 59.964 50.000 0.00 0.00 35.23 4.63
2309 2388 3.631227 ACTAGGTGAACTACATACGGAGC 59.369 47.826 0.00 0.00 0.00 4.70
2310 2389 2.453521 AGGTGAACTACATACGGAGCA 58.546 47.619 0.00 0.00 0.00 4.26
2311 2390 2.829720 AGGTGAACTACATACGGAGCAA 59.170 45.455 0.00 0.00 0.00 3.91
2312 2391 3.259876 AGGTGAACTACATACGGAGCAAA 59.740 43.478 0.00 0.00 0.00 3.68
2313 2392 3.998341 GGTGAACTACATACGGAGCAAAA 59.002 43.478 0.00 0.00 0.00 2.44
2314 2393 4.634443 GGTGAACTACATACGGAGCAAAAT 59.366 41.667 0.00 0.00 0.00 1.82
2315 2394 5.447279 GGTGAACTACATACGGAGCAAAATG 60.447 44.000 0.00 0.00 0.00 2.32
2316 2395 4.634004 TGAACTACATACGGAGCAAAATGG 59.366 41.667 0.00 0.00 0.00 3.16
2317 2396 4.481368 ACTACATACGGAGCAAAATGGA 57.519 40.909 0.00 0.00 0.00 3.41
2318 2397 5.036117 ACTACATACGGAGCAAAATGGAT 57.964 39.130 0.00 0.00 0.00 3.41
2319 2398 4.816385 ACTACATACGGAGCAAAATGGATG 59.184 41.667 0.00 0.00 0.00 3.51
2320 2399 3.884895 ACATACGGAGCAAAATGGATGA 58.115 40.909 0.00 0.00 0.00 2.92
2321 2400 4.269183 ACATACGGAGCAAAATGGATGAA 58.731 39.130 0.00 0.00 0.00 2.57
2322 2401 4.889409 ACATACGGAGCAAAATGGATGAAT 59.111 37.500 0.00 0.00 0.00 2.57
2323 2402 5.009010 ACATACGGAGCAAAATGGATGAATC 59.991 40.000 0.00 0.00 0.00 2.52
2324 2403 3.624777 ACGGAGCAAAATGGATGAATCT 58.375 40.909 0.00 0.00 0.00 2.40
2325 2404 4.780815 ACGGAGCAAAATGGATGAATCTA 58.219 39.130 0.00 0.00 0.00 1.98
2326 2405 4.576463 ACGGAGCAAAATGGATGAATCTAC 59.424 41.667 0.00 0.00 0.00 2.59
2327 2406 4.576053 CGGAGCAAAATGGATGAATCTACA 59.424 41.667 0.00 0.00 0.00 2.74
2328 2407 5.504665 CGGAGCAAAATGGATGAATCTACAC 60.505 44.000 0.00 0.00 0.00 2.90
2329 2408 5.591877 GGAGCAAAATGGATGAATCTACACT 59.408 40.000 0.00 0.00 0.00 3.55
2330 2409 6.096001 GGAGCAAAATGGATGAATCTACACTT 59.904 38.462 0.00 0.00 0.00 3.16
2331 2410 7.283127 GGAGCAAAATGGATGAATCTACACTTA 59.717 37.037 0.00 0.00 0.00 2.24
2332 2411 8.579850 AGCAAAATGGATGAATCTACACTTAA 57.420 30.769 0.00 0.00 0.00 1.85
2333 2412 9.023962 AGCAAAATGGATGAATCTACACTTAAA 57.976 29.630 0.00 0.00 0.00 1.52
2334 2413 9.638239 GCAAAATGGATGAATCTACACTTAAAA 57.362 29.630 0.00 0.00 0.00 1.52
2337 2416 9.807649 AAATGGATGAATCTACACTTAAAATGC 57.192 29.630 0.00 0.00 0.00 3.56
2338 2417 7.936496 TGGATGAATCTACACTTAAAATGCA 57.064 32.000 0.00 0.00 0.00 3.96
2339 2418 8.523915 TGGATGAATCTACACTTAAAATGCAT 57.476 30.769 0.00 0.00 0.00 3.96
2340 2419 8.623903 TGGATGAATCTACACTTAAAATGCATC 58.376 33.333 0.00 0.00 0.00 3.91
2341 2420 8.844244 GGATGAATCTACACTTAAAATGCATCT 58.156 33.333 0.00 0.00 0.00 2.90
2353 2432 9.944376 ACTTAAAATGCATCTATATACATCCGT 57.056 29.630 0.00 0.00 0.00 4.69
2358 2437 8.877808 AATGCATCTATATACATCCGTATGTG 57.122 34.615 3.56 0.00 45.99 3.21
2359 2438 6.805713 TGCATCTATATACATCCGTATGTGG 58.194 40.000 3.56 0.00 45.99 4.17
2360 2439 6.379988 TGCATCTATATACATCCGTATGTGGT 59.620 38.462 3.56 0.00 45.99 4.16
2361 2440 7.093509 TGCATCTATATACATCCGTATGTGGTT 60.094 37.037 3.56 0.00 45.99 3.67
2362 2441 7.764443 GCATCTATATACATCCGTATGTGGTTT 59.236 37.037 3.56 0.00 45.99 3.27
2363 2442 9.653287 CATCTATATACATCCGTATGTGGTTTT 57.347 33.333 3.56 0.00 45.99 2.43
2369 2448 8.740123 ATACATCCGTATGTGGTTTTTAATGA 57.260 30.769 3.56 0.00 45.99 2.57
2370 2449 7.455641 ACATCCGTATGTGGTTTTTAATGAA 57.544 32.000 0.00 0.00 44.79 2.57
2371 2450 7.887381 ACATCCGTATGTGGTTTTTAATGAAA 58.113 30.769 0.00 0.00 44.79 2.69
2372 2451 8.527810 ACATCCGTATGTGGTTTTTAATGAAAT 58.472 29.630 0.00 0.00 44.79 2.17
2373 2452 9.019764 CATCCGTATGTGGTTTTTAATGAAATC 57.980 33.333 0.00 0.00 0.00 2.17
2374 2453 8.343168 TCCGTATGTGGTTTTTAATGAAATCT 57.657 30.769 0.00 0.00 0.00 2.40
2375 2454 8.798402 TCCGTATGTGGTTTTTAATGAAATCTT 58.202 29.630 0.00 0.00 0.00 2.40
2376 2455 9.418045 CCGTATGTGGTTTTTAATGAAATCTTT 57.582 29.630 0.00 0.00 0.00 2.52
2402 2481 8.943909 ACAAAGACTTATATTTAGGAACGGAG 57.056 34.615 0.00 0.00 0.00 4.63
2403 2482 7.985752 ACAAAGACTTATATTTAGGAACGGAGG 59.014 37.037 0.00 0.00 0.00 4.30
2404 2483 6.667558 AGACTTATATTTAGGAACGGAGGG 57.332 41.667 0.00 0.00 0.00 4.30
2405 2484 6.379579 AGACTTATATTTAGGAACGGAGGGA 58.620 40.000 0.00 0.00 0.00 4.20
2406 2485 6.494146 AGACTTATATTTAGGAACGGAGGGAG 59.506 42.308 0.00 0.00 0.00 4.30
2407 2486 6.141790 ACTTATATTTAGGAACGGAGGGAGT 58.858 40.000 0.00 0.00 0.00 3.85
2408 2487 7.300658 ACTTATATTTAGGAACGGAGGGAGTA 58.699 38.462 0.00 0.00 0.00 2.59
2409 2488 7.954620 ACTTATATTTAGGAACGGAGGGAGTAT 59.045 37.037 0.00 0.00 0.00 2.12
2410 2489 9.471702 CTTATATTTAGGAACGGAGGGAGTATA 57.528 37.037 0.00 0.00 0.00 1.47
2411 2490 9.827198 TTATATTTAGGAACGGAGGGAGTATAA 57.173 33.333 0.00 0.00 0.00 0.98
2412 2491 6.667558 ATTTAGGAACGGAGGGAGTATAAG 57.332 41.667 0.00 0.00 0.00 1.73
2413 2492 3.684408 AGGAACGGAGGGAGTATAAGT 57.316 47.619 0.00 0.00 0.00 2.24
2414 2493 3.564264 AGGAACGGAGGGAGTATAAGTC 58.436 50.000 0.00 0.00 0.00 3.01
2415 2494 3.204831 AGGAACGGAGGGAGTATAAGTCT 59.795 47.826 0.00 0.00 0.00 3.24
2416 2495 3.959449 GGAACGGAGGGAGTATAAGTCTT 59.041 47.826 0.00 0.00 0.00 3.01
2417 2496 4.405036 GGAACGGAGGGAGTATAAGTCTTT 59.595 45.833 0.00 0.00 0.00 2.52
2418 2497 5.105023 GGAACGGAGGGAGTATAAGTCTTTT 60.105 44.000 0.00 0.00 0.00 2.27
2419 2498 6.097412 GGAACGGAGGGAGTATAAGTCTTTTA 59.903 42.308 0.00 0.00 0.00 1.52
2420 2499 6.712179 ACGGAGGGAGTATAAGTCTTTTAG 57.288 41.667 0.00 0.00 0.00 1.85
2421 2500 6.430007 ACGGAGGGAGTATAAGTCTTTTAGA 58.570 40.000 0.00 0.00 0.00 2.10
2422 2501 6.320926 ACGGAGGGAGTATAAGTCTTTTAGAC 59.679 42.308 0.00 0.00 45.38 2.59
2455 2534 8.917414 ATGGACTACAATATAGGGATGTATGT 57.083 34.615 0.00 0.00 0.00 2.29
2457 2536 9.475620 TGGACTACAATATAGGGATGTATGTAG 57.524 37.037 8.12 8.12 34.61 2.74
2458 2537 9.696572 GGACTACAATATAGGGATGTATGTAGA 57.303 37.037 14.79 0.00 33.24 2.59
2504 2583 9.478768 TCACTTATTTTGTTTCGTATGTAGTCA 57.521 29.630 0.00 0.00 0.00 3.41
2505 2584 9.525007 CACTTATTTTGTTTCGTATGTAGTCAC 57.475 33.333 0.00 0.00 0.00 3.67
2506 2585 9.485206 ACTTATTTTGTTTCGTATGTAGTCACT 57.515 29.630 0.00 0.00 0.00 3.41
2509 2588 7.542534 TTTTGTTTCGTATGTAGTCACTTGT 57.457 32.000 0.00 0.00 0.00 3.16
2510 2589 7.542534 TTTGTTTCGTATGTAGTCACTTGTT 57.457 32.000 0.00 0.00 0.00 2.83
2511 2590 6.519353 TGTTTCGTATGTAGTCACTTGTTG 57.481 37.500 0.00 0.00 0.00 3.33
2512 2591 6.274579 TGTTTCGTATGTAGTCACTTGTTGA 58.725 36.000 0.00 0.00 0.00 3.18
2513 2592 6.757478 TGTTTCGTATGTAGTCACTTGTTGAA 59.243 34.615 0.00 0.00 35.39 2.69
2514 2593 7.278203 TGTTTCGTATGTAGTCACTTGTTGAAA 59.722 33.333 0.00 0.00 35.39 2.69
2515 2594 7.956420 TTCGTATGTAGTCACTTGTTGAAAT 57.044 32.000 0.00 0.00 35.39 2.17
2516 2595 7.576750 TCGTATGTAGTCACTTGTTGAAATC 57.423 36.000 0.00 0.00 35.39 2.17
2517 2596 7.375834 TCGTATGTAGTCACTTGTTGAAATCT 58.624 34.615 0.00 0.00 35.39 2.40
2518 2597 7.870954 TCGTATGTAGTCACTTGTTGAAATCTT 59.129 33.333 0.00 0.00 35.39 2.40
2519 2598 8.495949 CGTATGTAGTCACTTGTTGAAATCTTT 58.504 33.333 0.00 0.00 35.39 2.52
2564 2643 9.930693 AGACAGAGGAAGTACTAAAATTTAGTG 57.069 33.333 24.11 9.75 0.00 2.74
2565 2644 9.924650 GACAGAGGAAGTACTAAAATTTAGTGA 57.075 33.333 24.11 9.06 0.00 3.41
2627 2706 8.761575 TTTTTGTTAATACTAGGTCGTGGTAG 57.238 34.615 0.00 0.00 0.00 3.18
2628 2707 7.701539 TTTGTTAATACTAGGTCGTGGTAGA 57.298 36.000 0.00 0.00 0.00 2.59
2629 2708 7.886629 TTGTTAATACTAGGTCGTGGTAGAT 57.113 36.000 0.00 0.00 0.00 1.98
2630 2709 7.886629 TGTTAATACTAGGTCGTGGTAGATT 57.113 36.000 0.00 0.00 0.00 2.40
2631 2710 8.297470 TGTTAATACTAGGTCGTGGTAGATTT 57.703 34.615 0.00 0.00 0.00 2.17
2632 2711 8.752187 TGTTAATACTAGGTCGTGGTAGATTTT 58.248 33.333 0.00 0.00 0.00 1.82
2633 2712 9.242477 GTTAATACTAGGTCGTGGTAGATTTTC 57.758 37.037 0.00 0.00 0.00 2.29
2634 2713 7.414222 AATACTAGGTCGTGGTAGATTTTCA 57.586 36.000 0.00 0.00 0.00 2.69
2635 2714 5.934402 ACTAGGTCGTGGTAGATTTTCAT 57.066 39.130 0.00 0.00 0.00 2.57
2636 2715 6.295719 ACTAGGTCGTGGTAGATTTTCATT 57.704 37.500 0.00 0.00 0.00 2.57
2637 2716 6.708285 ACTAGGTCGTGGTAGATTTTCATTT 58.292 36.000 0.00 0.00 0.00 2.32
2638 2717 6.817140 ACTAGGTCGTGGTAGATTTTCATTTC 59.183 38.462 0.00 0.00 0.00 2.17
2639 2718 5.805728 AGGTCGTGGTAGATTTTCATTTCT 58.194 37.500 0.00 0.00 0.00 2.52
2640 2719 5.875359 AGGTCGTGGTAGATTTTCATTTCTC 59.125 40.000 0.00 0.00 0.00 2.87
2641 2720 5.875359 GGTCGTGGTAGATTTTCATTTCTCT 59.125 40.000 0.00 0.00 0.00 3.10
2642 2721 7.039882 GGTCGTGGTAGATTTTCATTTCTCTA 58.960 38.462 0.00 0.00 0.00 2.43
2643 2722 7.010275 GGTCGTGGTAGATTTTCATTTCTCTAC 59.990 40.741 0.00 0.00 39.44 2.59
2644 2723 6.750501 TCGTGGTAGATTTTCATTTCTCTACG 59.249 38.462 0.00 0.00 40.51 3.51
2645 2724 6.530534 CGTGGTAGATTTTCATTTCTCTACGT 59.469 38.462 0.00 0.00 40.51 3.57
2646 2725 7.253684 CGTGGTAGATTTTCATTTCTCTACGTC 60.254 40.741 0.00 0.00 40.51 4.34
2647 2726 7.544566 GTGGTAGATTTTCATTTCTCTACGTCA 59.455 37.037 0.00 0.00 40.51 4.35
2648 2727 8.258007 TGGTAGATTTTCATTTCTCTACGTCAT 58.742 33.333 0.00 0.00 40.51 3.06
2649 2728 8.543774 GGTAGATTTTCATTTCTCTACGTCATG 58.456 37.037 0.00 0.00 40.51 3.07
2650 2729 9.302345 GTAGATTTTCATTTCTCTACGTCATGA 57.698 33.333 0.00 0.00 33.10 3.07
2651 2730 8.954950 AGATTTTCATTTCTCTACGTCATGAT 57.045 30.769 0.00 0.00 0.00 2.45
2652 2731 8.824781 AGATTTTCATTTCTCTACGTCATGATG 58.175 33.333 13.53 13.53 0.00 3.07
2653 2732 6.908870 TTTCATTTCTCTACGTCATGATGG 57.091 37.500 18.97 7.47 0.00 3.51
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
47 50 0.744281 TGTGACTCGTCAGCTTGTGA 59.256 50.000 0.00 0.00 40.75 3.58
53 56 0.164647 GCACAATGTGACTCGTCAGC 59.835 55.000 18.66 0.00 40.75 4.26
86 89 7.734942 AGAATGGCAGAATAAAAAGGAAACAA 58.265 30.769 0.00 0.00 0.00 2.83
102 105 0.907486 TGGTGGAGAGAGAATGGCAG 59.093 55.000 0.00 0.00 0.00 4.85
105 108 6.125029 ACATTAATTGGTGGAGAGAGAATGG 58.875 40.000 0.00 0.00 0.00 3.16
202 206 7.095187 ACGAATAGCATTTAATAGCTTAGGTGC 60.095 37.037 7.38 0.00 42.05 5.01
209 213 7.332926 CAGGATGACGAATAGCATTTAATAGCT 59.667 37.037 7.26 7.26 41.40 3.32
211 215 7.819415 TCCAGGATGACGAATAGCATTTAATAG 59.181 37.037 0.00 0.00 39.69 1.73
212 216 7.676004 TCCAGGATGACGAATAGCATTTAATA 58.324 34.615 0.00 0.00 39.69 0.98
213 217 6.533730 TCCAGGATGACGAATAGCATTTAAT 58.466 36.000 0.00 0.00 39.69 1.40
214 218 5.924356 TCCAGGATGACGAATAGCATTTAA 58.076 37.500 0.00 0.00 39.69 1.52
215 219 5.545063 TCCAGGATGACGAATAGCATTTA 57.455 39.130 0.00 0.00 39.69 1.40
216 220 4.422073 TCCAGGATGACGAATAGCATTT 57.578 40.909 0.00 0.00 39.69 2.32
219 223 2.965147 TCATCCAGGATGACGAATAGCA 59.035 45.455 26.17 2.92 43.11 3.49
241 265 7.791766 AGAGAGGGGATGAAGAATAACTATTCA 59.208 37.037 11.15 0.00 43.43 2.57
247 271 9.061435 CAAAATAGAGAGGGGATGAAGAATAAC 57.939 37.037 0.00 0.00 0.00 1.89
253 277 5.994250 TGTCAAAATAGAGAGGGGATGAAG 58.006 41.667 0.00 0.00 0.00 3.02
258 282 6.359804 CATTGATGTCAAAATAGAGAGGGGA 58.640 40.000 0.00 0.00 39.55 4.81
262 286 6.094464 TGGTGCATTGATGTCAAAATAGAGAG 59.906 38.462 0.00 0.00 39.55 3.20
263 287 5.945191 TGGTGCATTGATGTCAAAATAGAGA 59.055 36.000 0.00 0.00 39.55 3.10
264 288 6.198650 TGGTGCATTGATGTCAAAATAGAG 57.801 37.500 0.00 0.00 39.55 2.43
273 297 7.806690 ACGTATAAATATGGTGCATTGATGTC 58.193 34.615 0.00 0.00 0.00 3.06
274 298 7.744087 ACGTATAAATATGGTGCATTGATGT 57.256 32.000 0.00 0.00 0.00 3.06
525 550 9.901172 AGGTAATCTTATGTTCGTTTCCTAAAT 57.099 29.630 0.00 0.00 0.00 1.40
526 551 9.374838 GAGGTAATCTTATGTTCGTTTCCTAAA 57.625 33.333 0.00 0.00 0.00 1.85
527 552 7.703621 CGAGGTAATCTTATGTTCGTTTCCTAA 59.296 37.037 0.00 0.00 0.00 2.69
528 553 7.198390 CGAGGTAATCTTATGTTCGTTTCCTA 58.802 38.462 0.00 0.00 0.00 2.94
529 554 6.040878 CGAGGTAATCTTATGTTCGTTTCCT 58.959 40.000 0.00 0.00 0.00 3.36
530 555 5.233689 CCGAGGTAATCTTATGTTCGTTTCC 59.766 44.000 0.00 0.00 0.00 3.13
531 556 5.233689 CCCGAGGTAATCTTATGTTCGTTTC 59.766 44.000 0.00 0.00 0.00 2.78
532 557 5.114081 CCCGAGGTAATCTTATGTTCGTTT 58.886 41.667 0.00 0.00 0.00 3.60
533 558 4.161001 ACCCGAGGTAATCTTATGTTCGTT 59.839 41.667 0.00 0.00 32.11 3.85
534 559 3.703052 ACCCGAGGTAATCTTATGTTCGT 59.297 43.478 0.00 0.00 32.11 3.85
535 560 4.049186 CACCCGAGGTAATCTTATGTTCG 58.951 47.826 0.00 0.00 32.11 3.95
536 561 5.272283 TCACCCGAGGTAATCTTATGTTC 57.728 43.478 0.00 0.00 32.11 3.18
537 562 5.687166 TTCACCCGAGGTAATCTTATGTT 57.313 39.130 0.00 0.00 32.11 2.71
538 563 5.687166 TTTCACCCGAGGTAATCTTATGT 57.313 39.130 0.00 0.00 32.11 2.29
539 564 6.995511 TTTTTCACCCGAGGTAATCTTATG 57.004 37.500 0.00 0.00 32.11 1.90
540 565 9.117183 GTTATTTTTCACCCGAGGTAATCTTAT 57.883 33.333 0.00 0.00 32.11 1.73
541 566 8.323567 AGTTATTTTTCACCCGAGGTAATCTTA 58.676 33.333 0.00 0.00 32.11 2.10
542 567 7.173032 AGTTATTTTTCACCCGAGGTAATCTT 58.827 34.615 0.00 0.00 32.11 2.40
543 568 6.718294 AGTTATTTTTCACCCGAGGTAATCT 58.282 36.000 0.00 0.00 32.11 2.40
544 569 6.997239 AGTTATTTTTCACCCGAGGTAATC 57.003 37.500 0.00 0.00 32.11 1.75
545 570 9.470399 AATAAGTTATTTTTCACCCGAGGTAAT 57.530 29.630 2.10 0.00 32.11 1.89
546 571 8.866970 AATAAGTTATTTTTCACCCGAGGTAA 57.133 30.769 2.10 0.00 32.11 2.85
547 572 8.866970 AAATAAGTTATTTTTCACCCGAGGTA 57.133 30.769 13.95 0.00 34.91 3.08
548 573 7.770366 AAATAAGTTATTTTTCACCCGAGGT 57.230 32.000 13.95 0.00 34.91 3.85
549 574 8.085909 ACAAAATAAGTTATTTTTCACCCGAGG 58.914 33.333 24.55 15.19 43.71 4.63
551 576 9.896263 GTACAAAATAAGTTATTTTTCACCCGA 57.104 29.630 24.55 7.92 43.71 5.14
552 577 9.131416 GGTACAAAATAAGTTATTTTTCACCCG 57.869 33.333 28.14 20.19 43.71 5.28
557 582 9.647797 CCCAGGGTACAAAATAAGTTATTTTTC 57.352 33.333 24.55 18.27 43.71 2.29
558 583 9.161572 ACCCAGGGTACAAAATAAGTTATTTTT 57.838 29.630 24.55 18.82 38.99 1.94
559 584 8.590204 CACCCAGGGTACAAAATAAGTTATTTT 58.410 33.333 22.38 22.38 40.34 1.82
560 585 7.951245 TCACCCAGGGTACAAAATAAGTTATTT 59.049 33.333 12.21 13.95 35.43 1.40
561 586 7.471890 TCACCCAGGGTACAAAATAAGTTATT 58.528 34.615 12.21 2.10 32.11 1.40
562 587 7.034967 TCACCCAGGGTACAAAATAAGTTAT 57.965 36.000 12.21 0.00 32.11 1.89
563 588 6.451292 TCACCCAGGGTACAAAATAAGTTA 57.549 37.500 12.21 0.00 32.11 2.24
564 589 5.327737 TCACCCAGGGTACAAAATAAGTT 57.672 39.130 12.21 0.00 32.11 2.66
565 590 5.014755 TCATCACCCAGGGTACAAAATAAGT 59.985 40.000 12.21 0.00 32.11 2.24
566 591 5.505780 TCATCACCCAGGGTACAAAATAAG 58.494 41.667 12.21 0.00 32.11 1.73
567 592 5.522315 TCATCACCCAGGGTACAAAATAA 57.478 39.130 12.21 0.00 32.11 1.40
568 593 5.522315 TTCATCACCCAGGGTACAAAATA 57.478 39.130 12.21 0.00 32.11 1.40
569 594 4.396357 TTCATCACCCAGGGTACAAAAT 57.604 40.909 12.21 0.00 32.11 1.82
570 595 3.885976 TTCATCACCCAGGGTACAAAA 57.114 42.857 12.21 0.89 32.11 2.44
571 596 4.538490 ACTATTCATCACCCAGGGTACAAA 59.462 41.667 12.21 4.04 32.11 2.83
572 597 4.108570 ACTATTCATCACCCAGGGTACAA 58.891 43.478 12.21 0.00 32.11 2.41
573 598 3.731431 ACTATTCATCACCCAGGGTACA 58.269 45.455 12.21 0.36 32.11 2.90
574 599 4.040095 GGTACTATTCATCACCCAGGGTAC 59.960 50.000 12.21 1.01 32.11 3.34
575 600 4.228824 GGTACTATTCATCACCCAGGGTA 58.771 47.826 12.21 0.00 32.11 3.69
576 601 3.046374 GGTACTATTCATCACCCAGGGT 58.954 50.000 4.76 4.76 35.62 4.34
577 602 3.771577 GGTACTATTCATCACCCAGGG 57.228 52.381 2.85 2.85 0.00 4.45
582 607 2.963782 ACGGAGGGTACTATTCATCACC 59.036 50.000 0.00 0.00 0.00 4.02
583 608 3.890147 AGACGGAGGGTACTATTCATCAC 59.110 47.826 0.00 0.00 0.00 3.06
584 609 3.889538 CAGACGGAGGGTACTATTCATCA 59.110 47.826 0.00 0.00 0.00 3.07
585 610 4.142790 TCAGACGGAGGGTACTATTCATC 58.857 47.826 0.00 0.00 0.00 2.92
586 611 4.180377 TCAGACGGAGGGTACTATTCAT 57.820 45.455 0.00 0.00 0.00 2.57
587 612 3.657398 TCAGACGGAGGGTACTATTCA 57.343 47.619 0.00 0.00 0.00 2.57
588 613 4.996788 TTTCAGACGGAGGGTACTATTC 57.003 45.455 0.00 0.00 0.00 1.75
589 614 5.952347 ATTTTCAGACGGAGGGTACTATT 57.048 39.130 0.00 0.00 0.00 1.73
590 615 6.134754 AGTATTTTCAGACGGAGGGTACTAT 58.865 40.000 0.00 0.00 0.00 2.12
591 616 5.513233 AGTATTTTCAGACGGAGGGTACTA 58.487 41.667 0.00 0.00 0.00 1.82
592 617 4.351127 AGTATTTTCAGACGGAGGGTACT 58.649 43.478 0.00 0.00 0.00 2.73
593 618 4.680702 GAGTATTTTCAGACGGAGGGTAC 58.319 47.826 0.00 0.00 0.00 3.34
594 619 3.379372 CGAGTATTTTCAGACGGAGGGTA 59.621 47.826 0.00 0.00 0.00 3.69
595 620 2.165845 CGAGTATTTTCAGACGGAGGGT 59.834 50.000 0.00 0.00 0.00 4.34
596 621 2.165845 ACGAGTATTTTCAGACGGAGGG 59.834 50.000 0.00 0.00 0.00 4.30
597 622 3.436496 GACGAGTATTTTCAGACGGAGG 58.564 50.000 0.00 0.00 0.00 4.30
598 623 3.099362 CGACGAGTATTTTCAGACGGAG 58.901 50.000 0.00 0.00 0.00 4.63
599 624 2.743664 TCGACGAGTATTTTCAGACGGA 59.256 45.455 0.00 0.00 0.00 4.69
600 625 3.127081 TCGACGAGTATTTTCAGACGG 57.873 47.619 0.00 0.00 0.00 4.79
601 626 5.490472 TTTTCGACGAGTATTTTCAGACG 57.510 39.130 0.00 0.00 0.00 4.18
671 696 8.836413 CCGCAAATACTTATCAGGAGAAATAAA 58.164 33.333 0.00 0.00 0.00 1.40
672 697 8.208224 TCCGCAAATACTTATCAGGAGAAATAA 58.792 33.333 0.00 0.00 0.00 1.40
673 698 7.732025 TCCGCAAATACTTATCAGGAGAAATA 58.268 34.615 0.00 0.00 0.00 1.40
674 699 6.591935 TCCGCAAATACTTATCAGGAGAAAT 58.408 36.000 0.00 0.00 0.00 2.17
675 700 5.984725 TCCGCAAATACTTATCAGGAGAAA 58.015 37.500 0.00 0.00 0.00 2.52
676 701 5.607939 TCCGCAAATACTTATCAGGAGAA 57.392 39.130 0.00 0.00 0.00 2.87
677 702 5.511373 CCATCCGCAAATACTTATCAGGAGA 60.511 44.000 0.00 0.00 0.00 3.71
678 703 4.692625 CCATCCGCAAATACTTATCAGGAG 59.307 45.833 0.00 0.00 0.00 3.69
679 704 4.346709 TCCATCCGCAAATACTTATCAGGA 59.653 41.667 0.00 0.00 0.00 3.86
680 705 4.641396 TCCATCCGCAAATACTTATCAGG 58.359 43.478 0.00 0.00 0.00 3.86
681 706 4.692625 CCTCCATCCGCAAATACTTATCAG 59.307 45.833 0.00 0.00 0.00 2.90
682 707 4.504864 CCCTCCATCCGCAAATACTTATCA 60.505 45.833 0.00 0.00 0.00 2.15
683 708 4.003648 CCCTCCATCCGCAAATACTTATC 58.996 47.826 0.00 0.00 0.00 1.75
684 709 3.650942 TCCCTCCATCCGCAAATACTTAT 59.349 43.478 0.00 0.00 0.00 1.73
685 710 3.042682 TCCCTCCATCCGCAAATACTTA 58.957 45.455 0.00 0.00 0.00 2.24
686 711 1.843851 TCCCTCCATCCGCAAATACTT 59.156 47.619 0.00 0.00 0.00 2.24
687 712 1.417890 CTCCCTCCATCCGCAAATACT 59.582 52.381 0.00 0.00 0.00 2.12
688 713 1.141053 ACTCCCTCCATCCGCAAATAC 59.859 52.381 0.00 0.00 0.00 1.89
689 714 1.507140 ACTCCCTCCATCCGCAAATA 58.493 50.000 0.00 0.00 0.00 1.40
690 715 1.507140 TACTCCCTCCATCCGCAAAT 58.493 50.000 0.00 0.00 0.00 2.32
691 716 1.507140 ATACTCCCTCCATCCGCAAA 58.493 50.000 0.00 0.00 0.00 3.68
692 717 2.391926 TATACTCCCTCCATCCGCAA 57.608 50.000 0.00 0.00 0.00 4.85
693 718 2.623418 ATATACTCCCTCCATCCGCA 57.377 50.000 0.00 0.00 0.00 5.69
694 719 4.024670 AGTAATATACTCCCTCCATCCGC 58.975 47.826 0.00 0.00 32.47 5.54
695 720 4.402793 CCAGTAATATACTCCCTCCATCCG 59.597 50.000 0.00 0.00 36.76 4.18
696 721 5.342866 ACCAGTAATATACTCCCTCCATCC 58.657 45.833 0.00 0.00 36.76 3.51
697 722 6.270231 ACAACCAGTAATATACTCCCTCCATC 59.730 42.308 0.00 0.00 36.76 3.51
698 723 6.151049 ACAACCAGTAATATACTCCCTCCAT 58.849 40.000 0.00 0.00 36.76 3.41
699 724 5.535029 ACAACCAGTAATATACTCCCTCCA 58.465 41.667 0.00 0.00 36.76 3.86
700 725 6.289064 CAACAACCAGTAATATACTCCCTCC 58.711 44.000 0.00 0.00 36.76 4.30
701 726 5.758784 GCAACAACCAGTAATATACTCCCTC 59.241 44.000 0.00 0.00 36.76 4.30
702 727 5.397559 GGCAACAACCAGTAATATACTCCCT 60.398 44.000 0.00 0.00 36.76 4.20
703 728 4.820173 GGCAACAACCAGTAATATACTCCC 59.180 45.833 0.00 0.00 36.76 4.30
704 729 5.681639 AGGCAACAACCAGTAATATACTCC 58.318 41.667 0.00 0.00 36.22 3.85
705 730 7.498443 ACTAGGCAACAACCAGTAATATACTC 58.502 38.462 0.00 0.00 36.22 2.59
706 731 7.433537 ACTAGGCAACAACCAGTAATATACT 57.566 36.000 0.00 0.00 38.44 2.12
707 732 8.502105 AAACTAGGCAACAACCAGTAATATAC 57.498 34.615 0.00 0.00 41.41 1.47
709 734 9.120538 CATAAACTAGGCAACAACCAGTAATAT 57.879 33.333 0.00 0.00 41.41 1.28
710 735 8.322828 TCATAAACTAGGCAACAACCAGTAATA 58.677 33.333 0.00 0.00 41.41 0.98
759 784 3.307242 GTGTATCTCTTGGCTGCTTTACG 59.693 47.826 0.00 0.00 0.00 3.18
791 816 1.674057 GACCAGCTAGCAGTGTGGT 59.326 57.895 22.52 22.52 46.24 4.16
1309 1365 1.685491 GGAGGCGTAGGAGAAGGAGAA 60.685 57.143 0.00 0.00 0.00 2.87
1707 1766 6.961576 ACGCTATAGAGAACTCACATAACTC 58.038 40.000 10.73 0.00 0.00 3.01
1715 1774 9.249457 CAATTAATCAACGCTATAGAGAACTCA 57.751 33.333 10.73 0.00 0.00 3.41
1877 1949 6.369065 GTCAACCTACATATAGCTATTGTGGC 59.631 42.308 21.70 9.95 0.00 5.01
1896 1968 9.638239 TTATCTAAATTGCAAATTCAGTCAACC 57.362 29.630 1.71 0.00 0.00 3.77
1917 1989 6.153680 ACTCCTCTCACAAAATCGACTTATCT 59.846 38.462 0.00 0.00 0.00 1.98
2093 2172 3.249559 GGAAAGCGATCTAAGCCATGAAG 59.750 47.826 0.00 0.00 34.64 3.02
2094 2173 3.206150 GGAAAGCGATCTAAGCCATGAA 58.794 45.455 0.00 0.00 34.64 2.57
2095 2174 2.170397 TGGAAAGCGATCTAAGCCATGA 59.830 45.455 0.00 0.00 34.64 3.07
2096 2175 2.289002 GTGGAAAGCGATCTAAGCCATG 59.711 50.000 0.00 0.00 34.64 3.66
2217 2296 8.701895 TGGAGTATTAGTTTACAAGGGAGTATG 58.298 37.037 0.00 0.00 0.00 2.39
2224 2303 6.579865 ACCGATGGAGTATTAGTTTACAAGG 58.420 40.000 0.00 0.00 0.00 3.61
2237 2316 6.371278 AGAGTATTTAGGAACCGATGGAGTA 58.629 40.000 0.00 0.00 0.00 2.59
2241 2320 5.279056 GGAGAGAGTATTTAGGAACCGATGG 60.279 48.000 0.00 0.00 0.00 3.51
2242 2321 5.302059 TGGAGAGAGTATTTAGGAACCGATG 59.698 44.000 0.00 0.00 0.00 3.84
2243 2322 5.455872 TGGAGAGAGTATTTAGGAACCGAT 58.544 41.667 0.00 0.00 0.00 4.18
2244 2323 4.863548 TGGAGAGAGTATTTAGGAACCGA 58.136 43.478 0.00 0.00 0.00 4.69
2245 2324 5.793030 ATGGAGAGAGTATTTAGGAACCG 57.207 43.478 0.00 0.00 0.00 4.44
2246 2325 8.252624 ACTTATGGAGAGAGTATTTAGGAACC 57.747 38.462 0.00 0.00 0.00 3.62
2247 2326 9.138596 AGACTTATGGAGAGAGTATTTAGGAAC 57.861 37.037 0.00 0.00 0.00 3.62
2248 2327 9.716556 AAGACTTATGGAGAGAGTATTTAGGAA 57.283 33.333 0.00 0.00 0.00 3.36
2249 2328 9.716556 AAAGACTTATGGAGAGAGTATTTAGGA 57.283 33.333 0.00 0.00 34.26 2.94
2250 2329 9.757227 CAAAGACTTATGGAGAGAGTATTTAGG 57.243 37.037 0.00 0.00 34.26 2.69
2254 2333 9.702253 TCTACAAAGACTTATGGAGAGAGTATT 57.298 33.333 7.73 0.00 31.55 1.89
2261 2340 7.619698 TGGAATCTCTACAAAGACTTATGGAGA 59.380 37.037 14.19 14.19 35.27 3.71
2262 2341 7.708752 GTGGAATCTCTACAAAGACTTATGGAG 59.291 40.741 6.47 6.47 0.00 3.86
2263 2342 7.400339 AGTGGAATCTCTACAAAGACTTATGGA 59.600 37.037 0.00 0.00 29.47 3.41
2264 2343 7.560368 AGTGGAATCTCTACAAAGACTTATGG 58.440 38.462 0.00 0.00 29.47 2.74
2265 2344 9.743057 CTAGTGGAATCTCTACAAAGACTTATG 57.257 37.037 0.00 0.00 29.47 1.90
2266 2345 8.919145 CCTAGTGGAATCTCTACAAAGACTTAT 58.081 37.037 0.00 0.00 34.57 1.73
2267 2346 7.894364 ACCTAGTGGAATCTCTACAAAGACTTA 59.106 37.037 0.00 0.00 37.04 2.24
2268 2347 6.726764 ACCTAGTGGAATCTCTACAAAGACTT 59.273 38.462 0.00 0.00 37.04 3.01
2269 2348 6.153680 CACCTAGTGGAATCTCTACAAAGACT 59.846 42.308 0.00 0.00 37.04 3.24
2270 2349 6.153000 TCACCTAGTGGAATCTCTACAAAGAC 59.847 42.308 0.00 0.00 37.04 3.01
2271 2350 6.253758 TCACCTAGTGGAATCTCTACAAAGA 58.746 40.000 0.00 0.00 37.04 2.52
2272 2351 6.531503 TCACCTAGTGGAATCTCTACAAAG 57.468 41.667 0.00 0.00 37.04 2.77
2273 2352 6.497259 AGTTCACCTAGTGGAATCTCTACAAA 59.503 38.462 0.00 0.00 37.04 2.83
2274 2353 6.017192 AGTTCACCTAGTGGAATCTCTACAA 58.983 40.000 0.00 0.00 37.04 2.41
2275 2354 5.580998 AGTTCACCTAGTGGAATCTCTACA 58.419 41.667 0.00 0.00 37.04 2.74
2276 2355 6.602406 TGTAGTTCACCTAGTGGAATCTCTAC 59.398 42.308 10.11 10.11 37.04 2.59
2277 2356 6.728411 TGTAGTTCACCTAGTGGAATCTCTA 58.272 40.000 0.00 0.00 37.04 2.43
2278 2357 5.580998 TGTAGTTCACCTAGTGGAATCTCT 58.419 41.667 0.00 0.00 37.04 3.10
2279 2358 5.916661 TGTAGTTCACCTAGTGGAATCTC 57.083 43.478 0.00 0.00 37.04 2.75
2280 2359 6.039493 CGTATGTAGTTCACCTAGTGGAATCT 59.961 42.308 0.00 0.00 37.04 2.40
2281 2360 6.207213 CGTATGTAGTTCACCTAGTGGAATC 58.793 44.000 0.00 0.00 37.04 2.52
2282 2361 5.068723 CCGTATGTAGTTCACCTAGTGGAAT 59.931 44.000 0.00 0.00 37.04 3.01
2283 2362 4.400251 CCGTATGTAGTTCACCTAGTGGAA 59.600 45.833 0.00 0.00 37.04 3.53
2284 2363 3.949754 CCGTATGTAGTTCACCTAGTGGA 59.050 47.826 0.00 0.00 37.04 4.02
2285 2364 3.949754 TCCGTATGTAGTTCACCTAGTGG 59.050 47.826 0.00 0.00 39.83 4.00
2286 2365 4.497674 GCTCCGTATGTAGTTCACCTAGTG 60.498 50.000 0.00 0.00 34.45 2.74
2287 2366 3.631227 GCTCCGTATGTAGTTCACCTAGT 59.369 47.826 0.00 0.00 0.00 2.57
2288 2367 3.630769 TGCTCCGTATGTAGTTCACCTAG 59.369 47.826 0.00 0.00 0.00 3.02
2289 2368 3.623703 TGCTCCGTATGTAGTTCACCTA 58.376 45.455 0.00 0.00 0.00 3.08
2290 2369 2.453521 TGCTCCGTATGTAGTTCACCT 58.546 47.619 0.00 0.00 0.00 4.00
2291 2370 2.953466 TGCTCCGTATGTAGTTCACC 57.047 50.000 0.00 0.00 0.00 4.02
2292 2371 5.447279 CCATTTTGCTCCGTATGTAGTTCAC 60.447 44.000 0.00 0.00 0.00 3.18
2293 2372 4.634004 CCATTTTGCTCCGTATGTAGTTCA 59.366 41.667 0.00 0.00 0.00 3.18
2294 2373 4.873827 TCCATTTTGCTCCGTATGTAGTTC 59.126 41.667 0.00 0.00 0.00 3.01
2295 2374 4.839121 TCCATTTTGCTCCGTATGTAGTT 58.161 39.130 0.00 0.00 0.00 2.24
2296 2375 4.481368 TCCATTTTGCTCCGTATGTAGT 57.519 40.909 0.00 0.00 0.00 2.73
2297 2376 5.056480 TCATCCATTTTGCTCCGTATGTAG 58.944 41.667 0.00 0.00 0.00 2.74
2298 2377 5.029807 TCATCCATTTTGCTCCGTATGTA 57.970 39.130 0.00 0.00 0.00 2.29
2299 2378 3.884895 TCATCCATTTTGCTCCGTATGT 58.115 40.909 0.00 0.00 0.00 2.29
2300 2379 4.898829 TTCATCCATTTTGCTCCGTATG 57.101 40.909 0.00 0.00 0.00 2.39
2301 2380 5.380043 AGATTCATCCATTTTGCTCCGTAT 58.620 37.500 0.00 0.00 0.00 3.06
2302 2381 4.780815 AGATTCATCCATTTTGCTCCGTA 58.219 39.130 0.00 0.00 0.00 4.02
2303 2382 3.624777 AGATTCATCCATTTTGCTCCGT 58.375 40.909 0.00 0.00 0.00 4.69
2304 2383 4.576053 TGTAGATTCATCCATTTTGCTCCG 59.424 41.667 0.00 0.00 0.00 4.63
2305 2384 5.591877 AGTGTAGATTCATCCATTTTGCTCC 59.408 40.000 0.00 0.00 0.00 4.70
2306 2385 6.690194 AGTGTAGATTCATCCATTTTGCTC 57.310 37.500 0.00 0.00 0.00 4.26
2307 2386 8.579850 TTAAGTGTAGATTCATCCATTTTGCT 57.420 30.769 0.00 0.00 0.00 3.91
2308 2387 9.638239 TTTTAAGTGTAGATTCATCCATTTTGC 57.362 29.630 0.00 0.00 0.00 3.68
2311 2390 9.807649 GCATTTTAAGTGTAGATTCATCCATTT 57.192 29.630 0.00 0.00 0.00 2.32
2312 2391 8.970020 TGCATTTTAAGTGTAGATTCATCCATT 58.030 29.630 0.00 0.00 0.00 3.16
2313 2392 8.523915 TGCATTTTAAGTGTAGATTCATCCAT 57.476 30.769 0.00 0.00 0.00 3.41
2314 2393 7.936496 TGCATTTTAAGTGTAGATTCATCCA 57.064 32.000 0.00 0.00 0.00 3.41
2315 2394 8.844244 AGATGCATTTTAAGTGTAGATTCATCC 58.156 33.333 0.00 0.00 0.00 3.51
2327 2406 9.944376 ACGGATGTATATAGATGCATTTTAAGT 57.056 29.630 11.19 0.00 38.38 2.24
2331 2410 9.890629 ACATACGGATGTATATAGATGCATTTT 57.109 29.630 12.79 0.00 44.77 1.82
2332 2411 9.317936 CACATACGGATGTATATAGATGCATTT 57.682 33.333 14.23 0.00 44.82 2.32
2333 2412 7.928167 CCACATACGGATGTATATAGATGCATT 59.072 37.037 14.23 1.23 44.82 3.56
2334 2413 7.069950 ACCACATACGGATGTATATAGATGCAT 59.930 37.037 14.23 0.00 44.82 3.96
2335 2414 6.379988 ACCACATACGGATGTATATAGATGCA 59.620 38.462 14.23 0.00 44.82 3.96
2336 2415 6.806751 ACCACATACGGATGTATATAGATGC 58.193 40.000 14.23 0.00 44.82 3.91
2337 2416 9.653287 AAAACCACATACGGATGTATATAGATG 57.347 33.333 14.23 0.00 44.82 2.90
2343 2422 9.833917 TCATTAAAAACCACATACGGATGTATA 57.166 29.630 14.23 0.00 44.82 1.47
2344 2423 8.740123 TCATTAAAAACCACATACGGATGTAT 57.260 30.769 14.23 1.38 44.82 2.29
2345 2424 8.563123 TTCATTAAAAACCACATACGGATGTA 57.437 30.769 14.23 0.00 44.82 2.29
2347 2426 8.925161 ATTTCATTAAAAACCACATACGGATG 57.075 30.769 5.94 5.94 39.16 3.51
2348 2427 8.966868 AGATTTCATTAAAAACCACATACGGAT 58.033 29.630 0.00 0.00 0.00 4.18
2349 2428 8.343168 AGATTTCATTAAAAACCACATACGGA 57.657 30.769 0.00 0.00 0.00 4.69
2350 2429 8.980143 AAGATTTCATTAAAAACCACATACGG 57.020 30.769 0.00 0.00 0.00 4.02
2377 2456 7.985752 CCTCCGTTCCTAAATATAAGTCTTTGT 59.014 37.037 0.00 0.00 0.00 2.83
2378 2457 7.441458 CCCTCCGTTCCTAAATATAAGTCTTTG 59.559 40.741 0.00 0.00 0.00 2.77
2379 2458 7.346436 TCCCTCCGTTCCTAAATATAAGTCTTT 59.654 37.037 0.00 0.00 0.00 2.52
2380 2459 6.842807 TCCCTCCGTTCCTAAATATAAGTCTT 59.157 38.462 0.00 0.00 0.00 3.01
2381 2460 6.379579 TCCCTCCGTTCCTAAATATAAGTCT 58.620 40.000 0.00 0.00 0.00 3.24
2382 2461 6.267242 ACTCCCTCCGTTCCTAAATATAAGTC 59.733 42.308 0.00 0.00 0.00 3.01
2383 2462 6.141790 ACTCCCTCCGTTCCTAAATATAAGT 58.858 40.000 0.00 0.00 0.00 2.24
2384 2463 6.667558 ACTCCCTCCGTTCCTAAATATAAG 57.332 41.667 0.00 0.00 0.00 1.73
2385 2464 9.827198 TTATACTCCCTCCGTTCCTAAATATAA 57.173 33.333 0.00 0.00 0.00 0.98
2386 2465 9.471702 CTTATACTCCCTCCGTTCCTAAATATA 57.528 37.037 0.00 0.00 0.00 0.86
2387 2466 7.954620 ACTTATACTCCCTCCGTTCCTAAATAT 59.045 37.037 0.00 0.00 0.00 1.28
2388 2467 7.300658 ACTTATACTCCCTCCGTTCCTAAATA 58.699 38.462 0.00 0.00 0.00 1.40
2389 2468 6.141790 ACTTATACTCCCTCCGTTCCTAAAT 58.858 40.000 0.00 0.00 0.00 1.40
2390 2469 5.522641 ACTTATACTCCCTCCGTTCCTAAA 58.477 41.667 0.00 0.00 0.00 1.85
2391 2470 5.103771 AGACTTATACTCCCTCCGTTCCTAA 60.104 44.000 0.00 0.00 0.00 2.69
2392 2471 4.414846 AGACTTATACTCCCTCCGTTCCTA 59.585 45.833 0.00 0.00 0.00 2.94
2393 2472 3.204831 AGACTTATACTCCCTCCGTTCCT 59.795 47.826 0.00 0.00 0.00 3.36
2394 2473 3.564264 AGACTTATACTCCCTCCGTTCC 58.436 50.000 0.00 0.00 0.00 3.62
2395 2474 5.595257 AAAGACTTATACTCCCTCCGTTC 57.405 43.478 0.00 0.00 0.00 3.95
2396 2475 6.894103 TCTAAAAGACTTATACTCCCTCCGTT 59.106 38.462 0.00 0.00 0.00 4.44
2397 2476 6.320926 GTCTAAAAGACTTATACTCCCTCCGT 59.679 42.308 0.00 0.00 41.88 4.69
2398 2477 6.320672 TGTCTAAAAGACTTATACTCCCTCCG 59.679 42.308 8.42 0.00 45.27 4.63
2399 2478 7.657023 TGTCTAAAAGACTTATACTCCCTCC 57.343 40.000 8.42 0.00 45.27 4.30
2429 2508 9.338968 ACATACATCCCTATATTGTAGTCCATT 57.661 33.333 0.00 0.00 30.03 3.16
2430 2509 8.917414 ACATACATCCCTATATTGTAGTCCAT 57.083 34.615 0.00 0.00 30.03 3.41
2431 2510 9.475620 CTACATACATCCCTATATTGTAGTCCA 57.524 37.037 0.00 0.00 30.03 4.02
2432 2511 9.696572 TCTACATACATCCCTATATTGTAGTCC 57.303 37.037 0.00 0.00 30.03 3.85
2478 2557 9.478768 TGACTACATACGAAACAAAATAAGTGA 57.521 29.630 0.00 0.00 0.00 3.41
2479 2558 9.525007 GTGACTACATACGAAACAAAATAAGTG 57.475 33.333 0.00 0.00 0.00 3.16
2480 2559 9.485206 AGTGACTACATACGAAACAAAATAAGT 57.515 29.630 0.00 0.00 0.00 2.24
2483 2562 9.263538 ACAAGTGACTACATACGAAACAAAATA 57.736 29.630 0.00 0.00 0.00 1.40
2484 2563 8.149973 ACAAGTGACTACATACGAAACAAAAT 57.850 30.769 0.00 0.00 0.00 1.82
2485 2564 7.542534 ACAAGTGACTACATACGAAACAAAA 57.457 32.000 0.00 0.00 0.00 2.44
2486 2565 7.278203 TCAACAAGTGACTACATACGAAACAAA 59.722 33.333 0.00 0.00 0.00 2.83
2487 2566 6.757478 TCAACAAGTGACTACATACGAAACAA 59.243 34.615 0.00 0.00 0.00 2.83
2488 2567 6.274579 TCAACAAGTGACTACATACGAAACA 58.725 36.000 0.00 0.00 0.00 2.83
2489 2568 6.758593 TCAACAAGTGACTACATACGAAAC 57.241 37.500 0.00 0.00 0.00 2.78
2490 2569 7.773864 TTTCAACAAGTGACTACATACGAAA 57.226 32.000 0.00 0.00 35.39 3.46
2491 2570 7.870954 AGATTTCAACAAGTGACTACATACGAA 59.129 33.333 0.00 0.00 35.39 3.85
2492 2571 7.375834 AGATTTCAACAAGTGACTACATACGA 58.624 34.615 0.00 0.00 35.39 3.43
2493 2572 7.582435 AGATTTCAACAAGTGACTACATACG 57.418 36.000 0.00 0.00 35.39 3.06
2538 2617 9.930693 CACTAAATTTTAGTACTTCCTCTGTCT 57.069 33.333 18.85 0.00 0.00 3.41
2539 2618 9.924650 TCACTAAATTTTAGTACTTCCTCTGTC 57.075 33.333 18.85 0.00 0.00 3.51
2602 2681 8.584157 TCTACCACGACCTAGTATTAACAAAAA 58.416 33.333 0.00 0.00 0.00 1.94
2603 2682 8.121305 TCTACCACGACCTAGTATTAACAAAA 57.879 34.615 0.00 0.00 0.00 2.44
2604 2683 7.701539 TCTACCACGACCTAGTATTAACAAA 57.298 36.000 0.00 0.00 0.00 2.83
2605 2684 7.886629 ATCTACCACGACCTAGTATTAACAA 57.113 36.000 0.00 0.00 0.00 2.83
2606 2685 7.886629 AATCTACCACGACCTAGTATTAACA 57.113 36.000 0.00 0.00 0.00 2.41
2607 2686 9.242477 GAAAATCTACCACGACCTAGTATTAAC 57.758 37.037 0.00 0.00 0.00 2.01
2608 2687 8.970020 TGAAAATCTACCACGACCTAGTATTAA 58.030 33.333 0.00 0.00 0.00 1.40
2609 2688 8.523915 TGAAAATCTACCACGACCTAGTATTA 57.476 34.615 0.00 0.00 0.00 0.98
2610 2689 7.414222 TGAAAATCTACCACGACCTAGTATT 57.586 36.000 0.00 0.00 0.00 1.89
2611 2690 7.598759 ATGAAAATCTACCACGACCTAGTAT 57.401 36.000 0.00 0.00 0.00 2.12
2612 2691 7.414222 AATGAAAATCTACCACGACCTAGTA 57.586 36.000 0.00 0.00 0.00 1.82
2613 2692 5.934402 ATGAAAATCTACCACGACCTAGT 57.066 39.130 0.00 0.00 0.00 2.57
2614 2693 7.042335 AGAAATGAAAATCTACCACGACCTAG 58.958 38.462 0.00 0.00 0.00 3.02
2615 2694 6.942976 AGAAATGAAAATCTACCACGACCTA 58.057 36.000 0.00 0.00 0.00 3.08
2616 2695 5.805728 AGAAATGAAAATCTACCACGACCT 58.194 37.500 0.00 0.00 0.00 3.85
2617 2696 5.875359 AGAGAAATGAAAATCTACCACGACC 59.125 40.000 0.00 0.00 0.00 4.79
2618 2697 6.969828 AGAGAAATGAAAATCTACCACGAC 57.030 37.500 0.00 0.00 0.00 4.34
2619 2698 6.750501 CGTAGAGAAATGAAAATCTACCACGA 59.249 38.462 5.82 0.00 40.56 4.35
2620 2699 6.530534 ACGTAGAGAAATGAAAATCTACCACG 59.469 38.462 5.82 0.00 40.56 4.94
2621 2700 7.544566 TGACGTAGAGAAATGAAAATCTACCAC 59.455 37.037 0.00 2.17 40.56 4.16
2622 2701 7.608153 TGACGTAGAGAAATGAAAATCTACCA 58.392 34.615 0.00 0.00 40.56 3.25
2623 2702 8.543774 CATGACGTAGAGAAATGAAAATCTACC 58.456 37.037 0.00 0.00 40.56 3.18
2624 2703 9.302345 TCATGACGTAGAGAAATGAAAATCTAC 57.698 33.333 0.00 0.00 40.36 2.59
2626 2705 8.824781 CATCATGACGTAGAGAAATGAAAATCT 58.175 33.333 0.00 0.00 32.26 2.40
2627 2706 8.066595 CCATCATGACGTAGAGAAATGAAAATC 58.933 37.037 0.00 0.00 32.26 2.17
2628 2707 7.923888 CCATCATGACGTAGAGAAATGAAAAT 58.076 34.615 0.00 0.00 32.26 1.82
2629 2708 7.307493 CCATCATGACGTAGAGAAATGAAAA 57.693 36.000 0.00 0.00 32.26 2.29
2630 2709 6.908870 CCATCATGACGTAGAGAAATGAAA 57.091 37.500 0.00 0.00 32.26 2.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.