>input_sequence_72719
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--------------------------------------------------------------------ATGGCCTCC---
CAGCCCCAGGCGTGCAGCCTCCCGATCCACACCGCGCCCTCCCCCGATGCCAAGCCCCTGGACGACGACGACCTCCGCCT
GCGCAGACGCCGCCGCCGCTGCCGT------TGCATCTGCGCCCTGGTCACCCTCGGCGTGCTCCTGCTGCTGGGCGTGA
CCCTCCTGGTCCTCTTCCTCACCGTGCTCCGCGTGCGCGACCCCAGCACGCGCGTGCTCTCCGCCCGCTTCGTCGGCCCC
GTCCCCAGCCTCGCC------------------CAGCCCAACTTCACGGTGCAGCTCACCGCGGCCGTGCACAACCCCAA
CCGGTTCTCCTTCTCCTACGCCTCCGGCGC---CGCCGAGCTCTGGTACCGGGGCACCCACGTCGGGGACGCCCAGGTTG
ACCCCGGCCGCATCCCTGGCAGGGGGGACGAGACCGTGCAGCTGGACATGACGGTGCTCACCGCCAGCTTCACCAAGGAC
ATGGCGCAGCTGATCAAGGACATCGAGGCCGGGACGCTGCCGCTGGACGCGAGCGCGAGGATCCAGGGGAGGGTGGCCAT
CTTCGGCGTGTTCAAGCTCAGCGTGGTGGCCTACTCCGACTGCCACGTCGTCGTCGGATTCCCGAGCATGGACATCCGAG
GCCAGGAGTGCCACGACCACGCTAAGCTCTGA------------------------------------------------
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>chr6A_1_TraesCS6A01G148200
GTATCAACTTTTATGTATACATTTAATCATCTGTGCC--TAGAAAAAATTCACAAGCTGACGAGTCACATTGTGCGTACA
TAATATATTTGTTTCCTTTTTATTCTGCCATTCTCTCTCCACCAATTAATGTTTGCCTTAATTCTATTCAAATCAATAAA
TAC-AAATGGGTGGACATGCGAGCTATTAAATGCTAGGTGCCTGGGCACCTAAGCTATTAAAT-----------------
---GCTATTCGTCATCCTGGATGATGAATAGTTATTCTTCATCCCCTCTCTATTTTGACATCAATGCACCATATTTATAC
GTTTCGTAAATTTTGTCTTATTTCATACATAAAAAGAAAATGTAAGAAAATATATACTTGCCGTAAAAAATATTTTATGT
TACATAAAATTACAATTATAAAAATATAGTGTAAAACATACATAAAATGTGATTTTTCTGG-TTTATAACCTATATTTTT
AATTTTTTATACCAACTTTTACATATTGAATCAATATGCATGTAACTATTTATATTCTAAACATAATTTATTTAGGAAAC
GAACATAAGATTACCTCGGGTGAAAAATAACTTATTTTGTACCCTGGGTGATGAATAGTACCCTCCGTCTGAAAATACTC
GTCGAAAAAATGGATGTATCTAAATATATTTTAGTTCTAGATACTTTCATTTTTATTTATTTCTCCTGATAAGTATTTGC
GGATGGAGGGAGTATATTACTGGTTGTTGCCTAGTTTATGAATGACAATAACCAAGTGAACAACGTAAAGCAGCCAAGAG
ATACACGGCGACGGCACCACACTGCTAGCTGGTCCAACGGGGATGTCACTGGCTTCCTGTCCGTGCGGCACCATCCACCG
TCAAACAAGTCCAATCATTTATTTTATTATATCAGCATCTGCATGTTATAGTTTGTCCCGCCCTCGCTCACTTTGCACCG
CCAACTGGAGTAGATCATTAGCCCCTTCAATTCTATCGTCT---CTTGCAGGGCTCGGACGTTC-ACAATGGCCTCC---
CAGCCCCAGGCGTGCAGCCTCCCGATCCACACCGCGCCCTCCCCCGATGCCAAGCCCCTGGACGACGACGACCTCCGCCT
GCGCAGACGCCGCCGCCGCTGCCGT------TGCATCTGCGCCCTGGTCACCCTCGGCGTGCTCCTGCTGCTGGGCGTGA
CCCTCCTGGTCCTCTTCCTCACCGTGCTCCGCGTGCGCGACCCCAGCACGCGCGTGCTCTCCGCCCGCTTCGTCGGCCCC
GTCCCCAGCCTCGCC------------------CAGCCCAACTTCACGGTGCAGCTCACCGCGGCCGTGCACAACCCCAA
CCGGTTCTCCTTCTCCTACGCCTCCGGCGC---CGCCGAGCTCTGGTACCGGGGCACCCACGTCGGGGACGCCCAGGTTG
ACCCCGGCCGCATCCCTGGCAGGGGGGACGAGACCGTGCAGCTGGACATGACGGTGCTCACCGCCAGCTTCACCAAGGAC
ATGGCGCAGCTGATCAAGGACATCGAGGCCGGGACGCTGCCGCTGGACGCGAGCGCGAGGATCCAGGGGAGGGTGGCCAT
CTTCGGCGTGTTCAAGCTCAGCGTGGTGGCCTACTCCGACTGCCACGTCGTCGTCGGATTCCCGAGCATGGACATCCGAG
GCCAGGAGTGCCACGACCACGCTAAGCTCTGATCGGCCGGCTTGGCTGTTTGTTCGTTTTATGGAGAGCGTGATCAATGG
TTTGGGAGTTATGTGAGTTCTCTATAGCGTTGATTAATTGTCGTTATGTCTTGGTCTCATCGTATACAGAAGAAAAAGAT
TGTTGTTATGTCTTGGTCTCATCGTGTACAAAAGG-------------ATCATGTTTGTTAAAGTCAAGCGTTTGAAAAC
CACCAGGCATTGAAGCAATCTTTTTACAGCCACAATAGCTATATGTAGGTTGACTGAATTTGCAATTTAGATAAGTCGAT
TTTGTGAGAGGAGTAAACGGTTGAAGGAGGAAAAAAGTTGAACGAAGAAAAAAGAAGCACGGCTGTTGGATCTTGTACAC
CCCACGTTATGAAAACGTCCAGCACTAACATGACGCAAATGGTGAAGGGAAAGTAACA-------AAAAAACCTGCTCCA
CAAACCCAGGTCTTCATGGCTTAGATCGCTTTCCACGAGAATACAATGGTCAGAAAACATGTGCACGGGGGCTGATCTAG
CAAGGCGAGTAGTTGGCGAATGTCCAATCTTGTTGTGTTAGTTTCCAAATAATTACATACTCCCTTGTAAACTAATACTC
CATCGGTTCCTAAATACTCTCTCCATAAGTCTTTGTAGAGATTCCACTAGGTGAACTACATACGGAGCAAAATGGATGAA
TCTACACTTAAAATGCATCTATATACATCCGTATGTGGTTTTTAATGAAATCTTTACAAAGACTTATATTTAGGAACGGA
GGGAGTATAAGTCTTTTAGACATTTTAAATGGACTACAATATAGGGATGTATGTAGATATATTTTAAAGTATAGATTCAC
TTATTTTGTTTCGTATGTAGTCACTTGTTGAAATCTTTAAAAAGATTTATATTTAGAGACAGAGGAAGTACTAAAATTTA
GTGATCTAAACGTCTTTATATTATTTTATGGAGGAAGCATTTTTTGTTAATACTAGGTCGTGGTAGATTTTCATTTCTCT
ACGTCATGATGG
>chr1A_1
GTATCAACTTTTATGTATACATTTATTCATCTCTGTATGTAGAAAAAATCCACAAACTGACGAGTCACATTGTGCGTACA
TAGTATATATGTTTCCTTTTTATTATGACATTCTCTCTCCACCAATTAATGTGTGTTTTAATTCTATTCAAATCAATAAA
TACAAAATGGGTGGACATGCGAGCTATTAAATGCTAGGTGCCTGGACACCTAGGTGCCCCAAACAATTTATCTATACGGT
CGCGCTATTCGTCATCCTGGGTGAGGAATAATTATTTTTCACCCCT--TCTATTTTACCATCAATGCACCGTAATTTTAT
GTTCCGTAAGTTTTGTCTTATTTCCGACGCAAAAAAAGACCGTAAGGAAATTTATAATCGCCGTAAAAAATATTTTATGT
TATATAAAATTACAAACGTAAAAACATAGTTTAAAAAATACATAAACTGCAAATTTTCTTATTTTATGACCTATATTTTT
ATTTTCTTATGTCAAATTTTACGTAGTGAATCAAT---------------------------------------------
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>chr6D_709
TAG-----------------------------------------------------------------------------
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---------------ATTACTGGTTGTTGCCTAGTTTATGAATGACAATAAC-AAGTGAACAATGTAAAGCAGCCAAGAG
ATACACGGCGACGGCGCCACACTGCTAGCTGGTCCAACGGGGATGTCACTGGCTTCATGTCCGTGCGGCACCATCCACCG
TCAAACAAGTCCAATCATTTATTTTATTATATCAGCATCTGAATGTTATAGTTTGTCCCGCCCTCGCTCACTTTGCACGG
CCAACTGGAGTAGATCATTAGCCCCTTCAATTCCATCGTCT---CTTGCAGGGCTCGAACGTTC-ACAATGGCCTTC---
CAGTCCCAGGCGTGCAGCCTCCCGATCCACACCGCGCCCTCCCCCAACGCCAAGCCCCTGGACGACGACGACCTCCGCCT
GCGCAGACGCCGCCGCCGCTGCCGT------TGCATCTGCGCCCTGGTCACCCTCGGCGTGCTCCTGCTGCTGGGCGTGA
CCCTCCTGGTCCTCTTCCTCACCGTGCTCCGCGTGCGCGACCCCAGCACGCGCGTGCTCTCCGCGCGCTTCGTCGGCCCC
GTCCCCAGCCTCGCC------------------CAGCCCAACTTCACGGTGCAGCTCACCGCGGCCGTGCACAACCCCAA
CCGGGTCTCCTTCTCCTACGCCTCCGGCAC---CGCCGAGCTCTGGTACCGGGGCACCCACGTCGGGGACGCCCAGGTCG
GCCCCGGCCGCATCCCTGGCAGGGGGGACGAGACCGTGCAGCTGGACATGACGGTGCTCACCGCCAGCTTCACCAAGGAC
ATGGCGCAGCTGATCAAGGACATCGAGGCTGGGACGCTGCCGCTGGACGCGAGCGCGAGGATCCAGGGGAGGGTGGCCAT
CTTCGGCGTGTTCAAGCTCAGCGTCGTGGCCTACTCCGACTGCCACGTCGTCGTCGGATTCCCGAACATGGACATCCGAA
GCCAGGAGTGCCACGACCACGCTAAGCTCTGATCGGCCGGCTTGGCTGTTTGTTCGTTTTATGGAGAGCGTGATCAATGG
TTTGGAAGTTATGGGAGTTCTCTATAGCGTTGATTAATTGTTGTTATGTCTTGGTCTCATCGTATACAAAAGAAAAAGAT
TGTTGTTATGTCTTGGTCTCATCGTATACAAAAGAAAAAGATTGTTGTATCATGTTTGTTAAAGTCAAGTGTTTGAAAAC
CACCAC-----GAAGCAATTTTTGTACAACTACAATAGCTATATGTAAGTTGATTGAATTTGCAATTTGGATAAGTCGAT
TTTGTGAGAGGAGTAAACGGTTGAAGGAGGAAAAAAGCTGAACGAAGAAAAAAGAAGCACGGCTGTTGGATCTTGTACAC
CCCATGTTATGAAAACGTCCAGCACTAACATGACGCAAATGGTGGAGGGAAAGTAACA-------AAAAAACCTGCTCCA
CAAACCCAGGTTG--ATGGCTTAGATCGCTTTCCACGAGAATACAATGGTCAGAAAACATGTGCACG-GGGCTGATCTAG
CAAGGCGAGTAGTTGGCGAATGTCCAATCTTGTTGTGTTAGTTTCCAAATAATTATATACTCTCTTGTAAACTAACACT-
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>chr6B_715
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------------------ACTGGTTGTTGCCTAGTTTATGAATGACAATAACCAAGTGAACAATGTAAAGCAGCGGAGAG
ATACACGGCGACGGCGCCTCACTGCTAGCTGGTCCAACGGGGATGTCACTGGCTTCATGTCCGTGCGGCACCATCCACCG
TCAAACAAGTCCAATCATTCATTTTATTATATCAGCATCTGCATGTTATAGTTTGTCCCGCCCTCGCTCACTTTGCACCG
CCAACT-----AGATCATTAGCCCCTTCGATTTCATCATCT---CTTGCAGGGCTCCAACGTTGGGCAATGGCC------
---TCCCAGGCGTGCAGCCTCCCGATCCACACCGCGCCCTCCCCCAACGCCAAGCCCCTGGACGACGACGACCTCCGCCT
GCGCAGACGCCGTCGCCGCTGCCGT------TGCATCTGCGCCCTGGTCACCCTCGTCGTGCTCCTGCTGCTGGGCGTGA
CCCTCCTGGTCCTCTTCCTCACCGTGCTCCGCGTGCGCGACCCCAGCACGCGCGTGCTCTCCGCCCGCTTCGTCGGCCCC
GTCCCCAGCCTCGCC------------------CAGCCCAACTTCACCGTGCAGCTCACCGCGGCCGTGCACAACCCCAA
CAGGGTCACCTTCTCCTACGCCTCCGCCAC---CGCCGAGCTCTGGTACCGGGGCACCCACGTCGGGGACGCCCAGGTCG
ACCCCGGCCGCATCCCTGGCAGGGGGGACGAGACCGTGCAGCTGGACATGACGGTGCTCACCGCCAGCTTCACCAAGGAC
ATGGCGCAGCTGATCAAGGACATCGAGGCCGGGACGCTGCCGCTGGACGCGAACGCGAGGATCCAGGGGAGGGTGGCCAT
CTTCGGCGTGTTCAAGCTCAGCGTGGTGGCCTACTCCGACTGCCACGTCGTCGTCGGATTCCCGAGCATGGACATCCGAA
GCCAGGAGTGCCACGACCACGCTAAGCTCTGATCGGCCGGCTTGGCTGTTTGTTCGTTTTATGGAGAGCGTGATCAATGG
TTT-----------------------------------------------------------------------------
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>chr7B_817
GGATGCATT-----------------------------------------------------------------------
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---------------------------------------------------GCTTCATGTCCGTACGGCATCATCCGCCG
TCAAACAAGTCCAATTCATTTCTAATTCCCTCCTA---------GTTATAGTTTCTCCGTCCCTCACTCACTTTCCATTA
CAGCTCGATCACTAGC--TAGCCCATTCGATCATCTGTTGTAGCCTTGTAGGGCTCCAACGTTC-GCAATGGCCTCCTCC
CCAGCCGCAGCGTGCAGCCTGCCGACGCGCACCGCGCCTTCCCTCGACGCCGAACCTGCGGACGAGGCCGGCCTCCGCCG
CCTGAGACGCCGCCGGCGCCGCCGCTGCATCTGCATCTGCGCCCTGGTCACCCTCGGCGTGCTCCTGCTCCTGGGCGTCA
CCCTCCTCGTCCTCTTCCTCACCGTGTTCCGTGTGCGCGACCCCACCACGCGCCTGCTCTCCACCCGCTTCGTCGGCCTC
GCGCCCAGCCTCACC------------------CAGCCCAACTTCACGCTGCTGCTCACCGTGGCCGTGCACAACCCCAA
CCCGGCCTCCTTCTCCTACGCCTCCGGCAC---CACCGGCCTCTGGTACCGGGGCGCCCACGTCGGGGACGCCCAGGTCG
ACCCCGGGCGCATCCCTAGCAAGGGGGACGGGGTCGTGCAGCTGGAGATGACGGTGCTCACCGCCGGCTTCACCAAGGAC
ATGGCGCAGCTGATAAGGGACATCGAGGCCGGGTCGCTGCCGCTGGACGCCAGCGCCAGGATCCCGGGGAGGGTGGCCGT
CTTGGGCGTGCTCAAGCTCAACGTCGTGGCCTACTCTGACTGCCACATCGTCGTCGGCTTCCCGGACATGGAGATCCGAG
GACAGGACTGCCGCGACCACGCTAAGCTCTGATCAGCTTGCTTG-----TTGTTCGTTTTATGG----------------
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>chr7A_978
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--------------------------------------------CTTGCAGGGCTTCGGCGTTC-GCAATGGCCTCC---
CCAGCAGCAGCGTGCAGCCTCCCGACCCCCACAGCGCCTTCCCTCGACGCCAAACCCGTGGACGAGGCCGGCCTCCGCCG
CTTGAGACGCCGCCGGCGCCGCCGCTGCATCTGCATCTGCGCCCTGGTCACCCTCGGCGTGCTCCTGCTCCTGGGCGTCA
CCCTCCTCGTCCTCTTCCTCACCGTGTTCCGCGTGCGCGACCCCACCACGCGCCTGCTCTCCACCCGCCTCGTCGGCCTC
GCGCCCAGCCTCACC------------------CACCCAAACTTCACGCTGCTGCTCACCGTGGCCGTGCACAACCCCAA
CCCGGCCTCCTTCGCCTACGCCTCCGGCAC---CACCGGCCTCTGGTACCGGGGCGCCCACGTCGGCGACGCCCAGGTCG
ACCCCGGACGCATCCCTAGCAAGGGGGACGGGGTCGTGCAGCTGGAGATGACGGTGCTCACCGCCGGCTTCACCAAGGAC
ATGGCGCAGCTGATCAGGGACATCGAGGCCGGGTCGCTGCCGCTGGACGCCAACGCCAGGATCCCGGGGAGGGTGGTCGT
CTTGGGCGTGTTCAAGCTCAACGTCGTGGCCTACTCTGACTGCCACATCGTCGTCGGCTTCCCGGACATGGAGATCCGAG
GCCAGGACTGCCGCGACCACGCTAAGCTCTGATCGGCTTGGCTG-----TCGTTCGTTTTATGG----------------
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>chr7D_978
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--------------------------------------------CTTGCAGGGCTTCAGCGTTC-GCAATGGCCTCC---
CCAGCAGCAGCGTGCAGCCTCCCGACCCACACAGCGCCTTCCCTCGACGACAAACCAGCGGACGAGGCCGGCCTCCGCCG
CCTGAGACGCCGCCGGCGCCGCCGCTGCATCTGCATCTGCGCCCTGGTCACCCTCGGCGTGCTCCTGCTCCTGGGCGTCA
CCCTCCTCGTCCTCTTCCTCACCGTGTTCCGCGTGCGCGACCCCACCACGCGCCTGCTCTCCACCCGCCTCGTCGGCCTC
GCGCCCAGCCTCACC------------------CAGCCCAACTTCACGCTGCTGCTCACCGTGGCTGTGCACAACCCCAA
CCCGGCCTCCTTCTCCTACGCCTCCGGCAC---CACGGGCCTCTGGTACCGGGGCGCCCACGTCGGCGACGCCCAGGTCG
ACCCGGGACGCATCCCTAGCAAGGGGGACGGCGTCGTGCAGCTGGAGATGACGGTGCTCACCGCCGGCTTCACCAAGGAC
ATGGCACAGCTGATTAGGGACATCGAGGCCGGGTCGCTGCCACTGGACGCCAACGCCAGGATCCCGGGGAGGGTGGCCGT
CCTGGGCGTGTTCAAGCTCAACGTCGTCGCCTACTCTGACTGCCACATCGTCGTCGGCTTCCCGGACATGGAGATCCGAG
GCCAGGACTGCCGCGACCACGCTAAGCTCTGATCGGCTTGGTTG-----TTGTTCGTTTTATGG----------------
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>chr5A_1166
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--CTCCTGATCCTCTTCCTCACCGTGCTCCGCGTGCGGGACCCGACGACGCGGCTCGTCTCCACGCGCCTCATCGGCGTG
GCCCCGCGCCTCACCTTCCCGGCGCTCAGCATCCAGCTCAACGTCACCCTCCTCATCACGGTGTCCGTGCACAACCCCAA
CCCGGCCTCCTTCTCCTTCCCCACGGGCGGCCACACGGACCTCACCTACCGCGGCGCCCACGTCGGCGACGCCGAGATCG
ACCCCGGCCGCGTCCCCAGTAAGGGGGACGCGGACGTGAAGCTGGCGCTGACGCTGCAGGCGGAGCGGTTCGCCGGGGAC
CTGGCGCAGCTGGTCGCGGACGTGGAGGCCGGATCGCTGCCGCTGGAGGCCAGCACCAGGATCCCCGGGCGGGTGGCGGT
GTTCGGCGTGTTCAAGCGCCACGCCGTCGCCTACTCCGACTGCAGCTTCGTCTTCGGCGTCGCGGAGCTGGGCGTCCGCA
GCCAGGAGTGTCGCGACCACACCAAGCTCTGATC----------------------------------------------
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>chr6B_1720
TTCTACTAG-----------------------------------------------------------------------
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------------------------TAGCGTTAATTAATTGTCGTTATGTCTTGGTCTCATCGTATGCAGAAGAAAAAGAT
TGTTGTTATGTCTTGGTCTCATCGTGTACAAAAGG-------------ATCGTGTTTGTTTAAGTCAAGCGTTTGAAAAC
CACCAGGCATTGAAGCAATCTTTTTACAACCACAATAGCTATATGTAAGTTGACTGAATTTGCAATTTGGATAAGTCTAT
TTTGTGAGAGGAGTAAATGGTTGAAGGAGGAAAAAAGCTGAACGAAGAAAAAAGAAGCACGGCTGTTGGATCTTGTACAC
CCCACGTTATGAAAACGACCAGCACTAACATGATGCAAATGGTGAAGGGAAAGTAACAACAACAAAAAAAAACTGCTCCA
CAAACCCAGGTTG--ATGGCTTAGATCGCTTTCCACGAGAATACAATGGTCAGAAAACATGTGCACGGGGGCTGATCTAA
CAAGGCGAGTACTTGGTGAATGTCCAATATTGTTGTGTTAGTCTCCAGATAATTAGATA---------------------
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------------
>SNPs
-------------------------S------S--SS------------S-----S------------------------
--S-----S---------------S--S------------------------S--SS-----------------------
---------------------------------------------S------S-SSSSSS--S-----------------
--------------------S---S-----S-----S----S---SSS--------SS------------S--S--S--S
---S-----S--------------SS--SS-----S-S-SS-----S----S----S-S---------------------
--S------------SSS------S-----S-----S---------S--SS-S------SS------S------------
-S---S----SS---S------S--S---------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSS------------------------------------------------S----------------
---------------S----------------------------------------S-----------------------
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---S-------------------------------------------S--------------------------------
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----S-------------------------------------------------------------------------S-
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-----S-------S------------------------------------------------------------------
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----------------------------S------------------S--------------------S-----------
-------------------------------------S------------------------------------------
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-----------SSSS-----------------------------------------------------------------
-------------------------------------------------------S------S------------S---S
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSS
>forward_857
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--------------------------------------GGGGATGTCACTGGCTTCC-----------------------
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>reverse_2174
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-------------TCATGGCTTAGATCGCTTTCCA---------------------------------------------
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