Multiple sequence alignment - TraesCS6A01G139700

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G139700 chr6A 100.000 2780 0 0 1 2780 114460086 114457307 0.000000e+00 5134
1 TraesCS6A01G139700 chr6A 85.090 389 56 2 1075 1462 422328667 422328280 2.010000e-106 396
2 TraesCS6A01G139700 chr6A 84.556 259 26 7 2443 2687 91923347 91923089 7.690000e-61 244
3 TraesCS6A01G139700 chr6A 83.774 265 29 5 2438 2688 80727557 80727293 3.580000e-59 239
4 TraesCS6A01G139700 chr6D 92.225 2148 77 27 1 2099 94601273 94603379 0.000000e+00 2959
5 TraesCS6A01G139700 chr6D 84.833 389 57 2 1075 1462 296348046 296347659 9.340000e-105 390
6 TraesCS6A01G139700 chr6D 83.824 272 30 4 2431 2688 80113591 80113862 2.140000e-61 246
7 TraesCS6A01G139700 chr6D 92.405 158 11 1 2111 2268 94603363 94603519 1.000000e-54 224
8 TraesCS6A01G139700 chr6D 95.522 67 3 0 2373 2439 94603874 94603940 1.050000e-19 108
9 TraesCS6A01G139700 chr6B 91.459 2002 94 35 1 1950 178274328 178272352 0.000000e+00 2678
10 TraesCS6A01G139700 chr6B 93.711 159 7 1 1943 2098 178272275 178272117 4.630000e-58 235
11 TraesCS6A01G139700 chr6B 82.707 266 28 8 2437 2687 654096304 654096566 1.300000e-53 220
12 TraesCS6A01G139700 chr6B 91.083 157 14 0 2112 2268 178272067 178271911 2.170000e-51 213
13 TraesCS6A01G139700 chr6B 91.011 89 8 0 2351 2439 178271063 178270975 1.350000e-23 121
14 TraesCS6A01G139700 chr7A 87.915 422 48 3 1071 1492 662967093 662967511 6.920000e-136 494
15 TraesCS6A01G139700 chr7A 84.906 265 26 4 2435 2685 67687375 67687111 3.550000e-64 255
16 TraesCS6A01G139700 chr7A 82.642 265 32 8 2434 2684 9731145 9731409 3.600000e-54 222
17 TraesCS6A01G139700 chr7A 82.576 264 31 10 2435 2684 465760867 465760605 4.660000e-53 219
18 TraesCS6A01G139700 chr7A 87.234 94 10 1 2432 2523 675403814 675403907 3.790000e-19 106
19 TraesCS6A01G139700 chr7B 87.209 430 52 3 1063 1492 631405256 631405682 1.160000e-133 486
20 TraesCS6A01G139700 chr7B 81.884 276 33 11 2433 2692 436122541 436122815 1.680000e-52 217
21 TraesCS6A01G139700 chr7D 86.854 426 53 3 1067 1492 573192880 573193302 9.010000e-130 473
22 TraesCS6A01G139700 chr1D 87.042 355 46 0 1068 1422 214068344 214067990 4.310000e-108 401
23 TraesCS6A01G139700 chr1D 84.238 387 57 4 1078 1462 393750473 393750089 9.400000e-100 374
24 TraesCS6A01G139700 chr4A 86.397 272 22 5 2429 2685 577889814 577889543 1.630000e-72 283
25 TraesCS6A01G139700 chr4A 82.562 281 32 13 2434 2700 621420761 621421038 5.990000e-57 231
26 TraesCS6A01G139700 chr1A 84.906 265 24 5 2436 2684 27248272 27248008 1.280000e-63 254
27 TraesCS6A01G139700 chr1A 84.528 265 26 5 2437 2687 38321641 38321904 5.950000e-62 248
28 TraesCS6A01G139700 chr5D 83.209 268 31 5 2433 2686 450172905 450172638 1.660000e-57 233
29 TraesCS6A01G139700 chr5B 81.433 307 36 12 2438 2726 67902179 67901876 5.990000e-57 231
30 TraesCS6A01G139700 chr5B 81.712 257 33 9 2432 2684 45707996 45707750 4.690000e-48 202
31 TraesCS6A01G139700 chr3A 82.657 271 31 7 2438 2693 365823491 365823222 2.790000e-55 226
32 TraesCS6A01G139700 chr3A 80.970 268 32 10 2433 2685 477319247 477319510 7.860000e-46 195
33 TraesCS6A01G139700 chr2D 82.510 263 32 6 2436 2685 256956303 256956564 4.660000e-53 219
34 TraesCS6A01G139700 chr1B 82.222 270 31 8 2432 2685 575916876 575916608 1.680000e-52 217
35 TraesCS6A01G139700 chr3D 82.264 265 29 7 2437 2684 391430591 391430328 2.170000e-51 213
36 TraesCS6A01G139700 chr2A 82.258 248 27 10 2438 2669 588288114 588287868 6.070000e-47 198
37 TraesCS6A01G139700 chr2B 76.190 273 38 19 2433 2684 206286913 206287179 4.860000e-23 119
38 TraesCS6A01G139700 chr5A 83.333 108 16 1 2432 2537 688838679 688838572 6.340000e-17 99


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G139700 chr6A 114457307 114460086 2779 True 5134.00 5134 100.000 1 2780 1 chr6A.!!$R3 2779
1 TraesCS6A01G139700 chr6D 94601273 94603940 2667 False 1097.00 2959 93.384 1 2439 3 chr6D.!!$F2 2438
2 TraesCS6A01G139700 chr6B 178270975 178274328 3353 True 811.75 2678 91.816 1 2439 4 chr6B.!!$R1 2438

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
50 51 0.319297 CTGGTTGCTTGCCTTCTTGC 60.319 55.0 0.0 0.0 0.0 4.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1828 1904 1.696988 CCAAAACTAACATGCACGCC 58.303 50.0 0.0 0.0 0.0 5.68 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 4.928398 CTGATCGAGCAGCTGGTT 57.072 55.556 21.18 3.68 0.00 3.67
50 51 0.319297 CTGGTTGCTTGCCTTCTTGC 60.319 55.000 0.00 0.00 0.00 4.01
59 60 2.437343 GCCTTCTTGCTCGTCGTCG 61.437 63.158 0.00 0.00 38.55 5.12
163 164 5.366460 TCTTGATCCATGCTCTCTGATTTC 58.634 41.667 0.00 0.00 0.00 2.17
201 214 1.402456 GCCTTGAACTGCTGCATCTTG 60.402 52.381 1.31 0.00 0.00 3.02
233 246 3.019564 GTCAAATCTAGGGCATGCTTGT 58.980 45.455 18.92 4.92 0.00 3.16
315 344 3.264998 CCCCCGGTCGATTTAGTTTTA 57.735 47.619 0.00 0.00 0.00 1.52
316 345 3.200483 CCCCCGGTCGATTTAGTTTTAG 58.800 50.000 0.00 0.00 0.00 1.85
317 346 3.369787 CCCCCGGTCGATTTAGTTTTAGT 60.370 47.826 0.00 0.00 0.00 2.24
334 363 7.564988 AGTTTTAGTTTTCTTCGTCTTCATCG 58.435 34.615 0.00 0.00 0.00 3.84
405 436 8.621286 TGTACCAAGAAAGAAAGAAAAAGCTAG 58.379 33.333 0.00 0.00 0.00 3.42
467 516 0.809636 CCATCCATGCGTGCGAGTTA 60.810 55.000 0.00 0.00 0.00 2.24
468 517 0.578683 CATCCATGCGTGCGAGTTAG 59.421 55.000 0.00 0.00 0.00 2.34
469 518 0.530650 ATCCATGCGTGCGAGTTAGG 60.531 55.000 0.00 0.00 0.00 2.69
470 519 2.173669 CCATGCGTGCGAGTTAGGG 61.174 63.158 0.00 0.00 0.00 3.53
471 520 2.511600 ATGCGTGCGAGTTAGGGC 60.512 61.111 0.00 0.00 0.00 5.19
472 521 3.019003 ATGCGTGCGAGTTAGGGCT 62.019 57.895 0.00 0.00 0.00 5.19
496 552 6.494893 TTTTCAATGAAGTAATCTCACCCG 57.505 37.500 0.00 0.00 0.00 5.28
521 577 3.031964 GCCATCACTGTGCGTCTGC 62.032 63.158 2.12 0.00 43.20 4.26
538 594 2.333225 CGCAGGTAGCTAGCCTCG 59.667 66.667 19.06 17.51 42.61 4.63
542 598 1.529713 AGGTAGCTAGCCTCGGAGC 60.530 63.158 19.06 1.77 39.08 4.70
768 835 2.741145 ACCCTAGTTCTCGCTGAATCT 58.259 47.619 0.00 0.00 36.99 2.40
786 857 5.541484 TGAATCTTGATCTGCCATAGCTAGA 59.459 40.000 0.00 0.00 40.80 2.43
789 860 6.035368 TCTTGATCTGCCATAGCTAGAATC 57.965 41.667 0.00 0.00 40.80 2.52
816 887 4.039366 GGGAGATACTAGTTCGCCAAGAAT 59.961 45.833 20.64 0.78 41.49 2.40
828 899 3.005367 TCGCCAAGAATTTCAAGAAACCC 59.995 43.478 0.00 0.00 32.51 4.11
861 932 2.960819 CAGTACACTGGGACACTAAGC 58.039 52.381 1.21 0.00 40.20 3.09
862 933 1.900486 AGTACACTGGGACACTAAGCC 59.100 52.381 0.00 0.00 0.00 4.35
863 934 1.621814 GTACACTGGGACACTAAGCCA 59.378 52.381 0.00 0.00 0.00 4.75
864 935 1.362224 ACACTGGGACACTAAGCCAT 58.638 50.000 0.00 0.00 0.00 4.40
865 936 2.546899 ACACTGGGACACTAAGCCATA 58.453 47.619 0.00 0.00 0.00 2.74
866 937 2.910319 ACACTGGGACACTAAGCCATAA 59.090 45.455 0.00 0.00 0.00 1.90
922 993 2.361610 CATTGGTCAAGGCCGGCT 60.362 61.111 28.56 9.77 0.00 5.52
930 1001 1.544246 GTCAAGGCCGGCTTTGTTTAT 59.456 47.619 39.80 11.73 35.05 1.40
941 1012 5.108517 CGGCTTTGTTTATTAATGCCATGT 58.891 37.500 10.34 0.00 44.27 3.21
960 1031 0.749049 TCATCGGTGCAGATCTGAGG 59.251 55.000 27.04 11.11 0.00 3.86
967 1040 2.418471 GGTGCAGATCTGAGGTGAGAAG 60.418 54.545 27.04 0.00 0.00 2.85
1232 1305 1.391157 GGCAAGACCAAGGTGCACAA 61.391 55.000 20.43 0.00 40.12 3.33
1491 1564 4.415332 CACCCCCAGACGTCGTCG 62.415 72.222 19.11 13.66 37.67 5.12
1828 1904 9.747293 GTAATTAAGTAGGCCTAAGTAAGTCAG 57.253 37.037 15.83 0.00 0.00 3.51
1890 1967 2.083774 TCATCTCGCCATTTGAACACC 58.916 47.619 0.00 0.00 0.00 4.16
1893 1970 0.609131 CTCGCCATTTGAACACCCCT 60.609 55.000 0.00 0.00 0.00 4.79
1894 1971 0.693622 TCGCCATTTGAACACCCCTA 59.306 50.000 0.00 0.00 0.00 3.53
1895 1972 1.094785 CGCCATTTGAACACCCCTAG 58.905 55.000 0.00 0.00 0.00 3.02
1896 1973 1.474330 GCCATTTGAACACCCCTAGG 58.526 55.000 0.06 0.06 40.04 3.02
1925 2002 2.186384 GCAGTGCGCTCCATCTCT 59.814 61.111 9.73 0.00 37.77 3.10
1959 2119 4.591498 TCCACTAGTAGCTCTTTTGGTGAA 59.409 41.667 0.00 0.00 32.14 3.18
1963 2123 7.301054 CACTAGTAGCTCTTTTGGTGAATTTG 58.699 38.462 0.00 0.00 0.00 2.32
2031 2194 2.289547 GCATGGTTGTGTACGTGAAGTT 59.710 45.455 0.00 0.00 0.00 2.66
2088 2251 3.923017 AACTCACAGCCAATTAAGTGC 57.077 42.857 0.00 0.00 32.25 4.40
2098 2261 5.574055 CAGCCAATTAAGTGCTATGTTTGTG 59.426 40.000 0.00 0.00 33.16 3.33
2099 2262 4.864247 GCCAATTAAGTGCTATGTTTGTGG 59.136 41.667 0.00 0.00 0.00 4.17
2100 2263 5.566627 GCCAATTAAGTGCTATGTTTGTGGT 60.567 40.000 0.00 0.00 0.00 4.16
2101 2264 6.454795 CCAATTAAGTGCTATGTTTGTGGTT 58.545 36.000 0.00 0.00 0.00 3.67
2102 2265 6.365789 CCAATTAAGTGCTATGTTTGTGGTTG 59.634 38.462 0.00 0.00 0.00 3.77
2103 2266 6.648879 ATTAAGTGCTATGTTTGTGGTTGT 57.351 33.333 0.00 0.00 0.00 3.32
2104 2267 7.753309 ATTAAGTGCTATGTTTGTGGTTGTA 57.247 32.000 0.00 0.00 0.00 2.41
2108 2271 6.270064 AGTGCTATGTTTGTGGTTGTAAAAC 58.730 36.000 0.00 0.00 34.97 2.43
2156 2355 4.551702 TTTCATGGTTAGCTAGCACAGA 57.448 40.909 18.83 4.08 37.02 3.41
2200 2399 9.827411 GTCTAATTTAGTTCACCAAGTCATTTC 57.173 33.333 3.45 0.00 0.00 2.17
2203 2402 8.463930 AATTTAGTTCACCAAGTCATTTCTCA 57.536 30.769 0.00 0.00 0.00 3.27
2268 2467 5.138276 TGTAGGGTCACTGGTCATATCTAC 58.862 45.833 0.00 0.00 0.00 2.59
2270 2469 5.664815 AGGGTCACTGGTCATATCTACTA 57.335 43.478 0.00 0.00 0.00 1.82
2271 2470 5.636123 AGGGTCACTGGTCATATCTACTAG 58.364 45.833 0.00 0.00 0.00 2.57
2272 2471 5.134679 AGGGTCACTGGTCATATCTACTAGT 59.865 44.000 0.00 0.00 39.00 2.57
2273 2472 6.332103 AGGGTCACTGGTCATATCTACTAGTA 59.668 42.308 1.89 1.89 36.64 1.82
2275 2474 7.225725 GGTCACTGGTCATATCTACTAGTACT 58.774 42.308 0.00 0.00 36.64 2.73
2277 2476 9.426837 GTCACTGGTCATATCTACTAGTACTAG 57.573 40.741 25.30 25.30 36.64 2.57
2312 2706 3.209410 GGCCCAACAGTCATATCTTCAG 58.791 50.000 0.00 0.00 0.00 3.02
2313 2707 3.370953 GGCCCAACAGTCATATCTTCAGT 60.371 47.826 0.00 0.00 0.00 3.41
2314 2708 4.265073 GCCCAACAGTCATATCTTCAGTT 58.735 43.478 0.00 0.00 0.00 3.16
2315 2709 5.428253 GCCCAACAGTCATATCTTCAGTTA 58.572 41.667 0.00 0.00 0.00 2.24
2427 3432 0.531532 CTCATGCACCTGTCGGATCC 60.532 60.000 0.00 0.00 0.00 3.36
2433 3438 0.103208 CACCTGTCGGATCCAGCTAC 59.897 60.000 13.41 4.64 0.00 3.58
2439 3444 2.426024 TGTCGGATCCAGCTACAAGTAC 59.574 50.000 13.41 0.00 0.00 2.73
2440 3445 2.688958 GTCGGATCCAGCTACAAGTACT 59.311 50.000 13.41 0.00 0.00 2.73
2441 3446 3.130693 GTCGGATCCAGCTACAAGTACTT 59.869 47.826 13.41 1.12 0.00 2.24
2442 3447 3.380637 TCGGATCCAGCTACAAGTACTTC 59.619 47.826 13.41 0.00 0.00 3.01
2443 3448 3.491104 CGGATCCAGCTACAAGTACTTCC 60.491 52.174 13.41 0.00 0.00 3.46
2444 3449 3.707102 GGATCCAGCTACAAGTACTTCCT 59.293 47.826 6.95 0.00 0.00 3.36
2445 3450 4.162509 GGATCCAGCTACAAGTACTTCCTT 59.837 45.833 6.95 0.00 0.00 3.36
2446 3451 4.803098 TCCAGCTACAAGTACTTCCTTC 57.197 45.455 4.77 0.00 0.00 3.46
2447 3452 3.192844 TCCAGCTACAAGTACTTCCTTCG 59.807 47.826 4.77 0.00 0.00 3.79
2448 3453 3.056749 CCAGCTACAAGTACTTCCTTCGT 60.057 47.826 4.77 2.93 0.00 3.85
2449 3454 4.557205 CAGCTACAAGTACTTCCTTCGTT 58.443 43.478 4.77 0.00 0.00 3.85
2450 3455 4.989168 CAGCTACAAGTACTTCCTTCGTTT 59.011 41.667 4.77 0.00 0.00 3.60
2451 3456 5.118817 CAGCTACAAGTACTTCCTTCGTTTC 59.881 44.000 4.77 0.00 0.00 2.78
2452 3457 5.010820 AGCTACAAGTACTTCCTTCGTTTCT 59.989 40.000 4.77 0.00 0.00 2.52
2453 3458 5.695363 GCTACAAGTACTTCCTTCGTTTCTT 59.305 40.000 4.77 0.00 0.00 2.52
2454 3459 6.202379 GCTACAAGTACTTCCTTCGTTTCTTT 59.798 38.462 4.77 0.00 0.00 2.52
2455 3460 6.997239 ACAAGTACTTCCTTCGTTTCTTTT 57.003 33.333 4.77 0.00 0.00 2.27
2456 3461 7.387119 ACAAGTACTTCCTTCGTTTCTTTTT 57.613 32.000 4.77 0.00 0.00 1.94
2457 3462 8.496707 ACAAGTACTTCCTTCGTTTCTTTTTA 57.503 30.769 4.77 0.00 0.00 1.52
2458 3463 8.610035 ACAAGTACTTCCTTCGTTTCTTTTTAG 58.390 33.333 4.77 0.00 0.00 1.85
2459 3464 8.610035 CAAGTACTTCCTTCGTTTCTTTTTAGT 58.390 33.333 4.77 0.00 0.00 2.24
2460 3465 8.362860 AGTACTTCCTTCGTTTCTTTTTAGTC 57.637 34.615 0.00 0.00 0.00 2.59
2461 3466 8.202811 AGTACTTCCTTCGTTTCTTTTTAGTCT 58.797 33.333 0.00 0.00 0.00 3.24
2462 3467 7.247929 ACTTCCTTCGTTTCTTTTTAGTCTG 57.752 36.000 0.00 0.00 0.00 3.51
2463 3468 5.668558 TCCTTCGTTTCTTTTTAGTCTGC 57.331 39.130 0.00 0.00 0.00 4.26
2464 3469 5.120399 TCCTTCGTTTCTTTTTAGTCTGCA 58.880 37.500 0.00 0.00 0.00 4.41
2465 3470 5.763204 TCCTTCGTTTCTTTTTAGTCTGCAT 59.237 36.000 0.00 0.00 0.00 3.96
2466 3471 6.932400 TCCTTCGTTTCTTTTTAGTCTGCATA 59.068 34.615 0.00 0.00 0.00 3.14
2467 3472 7.606456 TCCTTCGTTTCTTTTTAGTCTGCATAT 59.394 33.333 0.00 0.00 0.00 1.78
2468 3473 8.879759 CCTTCGTTTCTTTTTAGTCTGCATATA 58.120 33.333 0.00 0.00 0.00 0.86
2471 3476 9.210329 TCGTTTCTTTTTAGTCTGCATATAACA 57.790 29.630 0.00 0.00 0.00 2.41
2472 3477 9.988350 CGTTTCTTTTTAGTCTGCATATAACAT 57.012 29.630 0.00 0.00 0.00 2.71
2483 3488 9.182214 AGTCTGCATATAACATTTGATCAAAGT 57.818 29.630 24.17 18.46 33.32 2.66
2484 3489 9.443283 GTCTGCATATAACATTTGATCAAAGTC 57.557 33.333 24.17 10.73 33.32 3.01
2485 3490 9.176460 TCTGCATATAACATTTGATCAAAGTCA 57.824 29.630 24.17 10.61 33.32 3.41
2486 3491 9.791820 CTGCATATAACATTTGATCAAAGTCAA 57.208 29.630 24.17 11.64 36.38 3.18
2661 3666 9.554395 TGACTTTAATCAAATCTTATATGCGGA 57.446 29.630 0.00 0.00 0.00 5.54
2663 3668 9.561069 ACTTTAATCAAATCTTATATGCGGAGT 57.439 29.630 0.00 0.00 0.00 3.85
2670 3675 9.607988 TCAAATCTTATATGCGGAGTAAAAAGA 57.392 29.630 0.00 0.00 0.00 2.52
2674 3679 7.902032 TCTTATATGCGGAGTAAAAAGAAACG 58.098 34.615 0.00 0.00 0.00 3.60
2675 3680 7.760794 TCTTATATGCGGAGTAAAAAGAAACGA 59.239 33.333 0.00 0.00 0.00 3.85
2676 3681 6.730960 ATATGCGGAGTAAAAAGAAACGAA 57.269 33.333 0.00 0.00 0.00 3.85
2677 3682 4.879104 TGCGGAGTAAAAAGAAACGAAA 57.121 36.364 0.00 0.00 0.00 3.46
2678 3683 4.839796 TGCGGAGTAAAAAGAAACGAAAG 58.160 39.130 0.00 0.00 0.00 2.62
2679 3684 4.216731 GCGGAGTAAAAAGAAACGAAAGG 58.783 43.478 0.00 0.00 0.00 3.11
2680 3685 4.024641 GCGGAGTAAAAAGAAACGAAAGGA 60.025 41.667 0.00 0.00 0.00 3.36
2681 3686 5.676953 CGGAGTAAAAAGAAACGAAAGGAG 58.323 41.667 0.00 0.00 0.00 3.69
2682 3687 5.235831 CGGAGTAAAAAGAAACGAAAGGAGT 59.764 40.000 0.00 0.00 0.00 3.85
2683 3688 6.421801 CGGAGTAAAAAGAAACGAAAGGAGTA 59.578 38.462 0.00 0.00 0.00 2.59
2684 3689 7.117379 CGGAGTAAAAAGAAACGAAAGGAGTAT 59.883 37.037 0.00 0.00 0.00 2.12
2685 3690 9.428097 GGAGTAAAAAGAAACGAAAGGAGTATA 57.572 33.333 0.00 0.00 0.00 1.47
2710 3715 7.662604 TGAATATACGATACTTAGAGCGTCA 57.337 36.000 0.00 0.00 38.09 4.35
2711 3716 8.265165 TGAATATACGATACTTAGAGCGTCAT 57.735 34.615 0.00 0.00 38.09 3.06
2712 3717 9.374838 TGAATATACGATACTTAGAGCGTCATA 57.625 33.333 0.00 0.00 38.09 2.15
2713 3718 9.635632 GAATATACGATACTTAGAGCGTCATAC 57.364 37.037 0.00 0.00 38.09 2.39
2714 3719 8.713737 ATATACGATACTTAGAGCGTCATACA 57.286 34.615 0.00 0.00 38.09 2.29
2715 3720 5.943706 ACGATACTTAGAGCGTCATACAT 57.056 39.130 0.00 0.00 30.15 2.29
2716 3721 5.929278 ACGATACTTAGAGCGTCATACATC 58.071 41.667 0.00 0.00 30.15 3.06
2717 3722 5.469084 ACGATACTTAGAGCGTCATACATCA 59.531 40.000 0.00 0.00 30.15 3.07
2718 3723 6.017357 ACGATACTTAGAGCGTCATACATCAA 60.017 38.462 0.00 0.00 30.15 2.57
2719 3724 6.856426 CGATACTTAGAGCGTCATACATCAAA 59.144 38.462 0.00 0.00 0.00 2.69
2720 3725 7.539022 CGATACTTAGAGCGTCATACATCAAAT 59.461 37.037 0.00 0.00 0.00 2.32
2721 3726 9.841880 GATACTTAGAGCGTCATACATCAAATA 57.158 33.333 0.00 0.00 0.00 1.40
2724 3729 8.982685 ACTTAGAGCGTCATACATCAAATAATG 58.017 33.333 0.00 0.00 0.00 1.90
2725 3730 6.233430 AGAGCGTCATACATCAAATAATGC 57.767 37.500 0.00 0.00 0.00 3.56
2726 3731 5.759763 AGAGCGTCATACATCAAATAATGCA 59.240 36.000 0.00 0.00 0.00 3.96
2727 3732 6.429078 AGAGCGTCATACATCAAATAATGCAT 59.571 34.615 0.00 0.00 0.00 3.96
2728 3733 6.973843 AGCGTCATACATCAAATAATGCATT 58.026 32.000 17.56 17.56 0.00 3.56
2729 3734 7.080099 AGCGTCATACATCAAATAATGCATTC 58.920 34.615 16.86 0.00 0.00 2.67
2730 3735 6.306356 GCGTCATACATCAAATAATGCATTCC 59.694 38.462 16.86 0.00 0.00 3.01
2731 3736 7.361894 CGTCATACATCAAATAATGCATTCCA 58.638 34.615 16.86 0.00 0.00 3.53
2732 3737 7.324375 CGTCATACATCAAATAATGCATTCCAC 59.676 37.037 16.86 0.00 0.00 4.02
2733 3738 8.136800 GTCATACATCAAATAATGCATTCCACA 58.863 33.333 16.86 0.00 0.00 4.17
2734 3739 8.862085 TCATACATCAAATAATGCATTCCACAT 58.138 29.630 16.86 0.23 0.00 3.21
2735 3740 9.135843 CATACATCAAATAATGCATTCCACATC 57.864 33.333 16.86 0.00 0.00 3.06
2736 3741 7.114866 ACATCAAATAATGCATTCCACATCA 57.885 32.000 16.86 0.00 0.00 3.07
2737 3742 7.207383 ACATCAAATAATGCATTCCACATCAG 58.793 34.615 16.86 4.11 0.00 2.90
2738 3743 6.778834 TCAAATAATGCATTCCACATCAGT 57.221 33.333 16.86 0.00 0.00 3.41
2739 3744 6.798482 TCAAATAATGCATTCCACATCAGTC 58.202 36.000 16.86 0.00 0.00 3.51
2740 3745 5.428496 AATAATGCATTCCACATCAGTCG 57.572 39.130 16.86 0.00 0.00 4.18
2741 3746 1.671979 ATGCATTCCACATCAGTCGG 58.328 50.000 0.00 0.00 0.00 4.79
2742 3747 0.612744 TGCATTCCACATCAGTCGGA 59.387 50.000 0.00 0.00 0.00 4.55
2743 3748 1.210234 TGCATTCCACATCAGTCGGAT 59.790 47.619 0.00 0.00 36.39 4.18
2744 3749 2.433970 TGCATTCCACATCAGTCGGATA 59.566 45.455 0.00 0.00 33.95 2.59
2745 3750 3.071457 TGCATTCCACATCAGTCGGATAT 59.929 43.478 0.00 0.00 33.95 1.63
2746 3751 3.681897 GCATTCCACATCAGTCGGATATC 59.318 47.826 0.00 0.00 33.95 1.63
2747 3752 4.562347 GCATTCCACATCAGTCGGATATCT 60.562 45.833 2.05 0.00 33.95 1.98
2748 3753 5.545588 CATTCCACATCAGTCGGATATCTT 58.454 41.667 2.05 0.00 33.95 2.40
2749 3754 6.691508 CATTCCACATCAGTCGGATATCTTA 58.308 40.000 2.05 0.00 33.95 2.10
2750 3755 6.724893 TTCCACATCAGTCGGATATCTTAA 57.275 37.500 2.05 0.00 33.95 1.85
2751 3756 6.724893 TCCACATCAGTCGGATATCTTAAA 57.275 37.500 2.05 0.00 33.95 1.52
2752 3757 7.303182 TCCACATCAGTCGGATATCTTAAAT 57.697 36.000 2.05 0.00 33.95 1.40
2753 3758 7.735917 TCCACATCAGTCGGATATCTTAAATT 58.264 34.615 2.05 0.00 33.95 1.82
2754 3759 7.872993 TCCACATCAGTCGGATATCTTAAATTC 59.127 37.037 2.05 0.00 33.95 2.17
2755 3760 7.657354 CCACATCAGTCGGATATCTTAAATTCA 59.343 37.037 2.05 0.00 33.95 2.57
2756 3761 9.212641 CACATCAGTCGGATATCTTAAATTCAT 57.787 33.333 2.05 0.00 33.95 2.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 1.039856 GAAGGCAAGCAACCAGGAAA 58.960 50.000 0.00 0.00 0.00 3.13
50 51 2.049433 AAAGTGGGCGACGACGAG 60.049 61.111 12.29 0.00 44.74 4.18
59 60 2.100605 AGAAGACGATGAAAGTGGGC 57.899 50.000 0.00 0.00 0.00 5.36
163 164 4.913335 AGGCACATAATCAATCAAGCAG 57.087 40.909 0.00 0.00 0.00 4.24
201 214 4.576463 CCCTAGATTTGACTAACACATGCC 59.424 45.833 0.00 0.00 0.00 4.40
233 246 5.392995 TGATTCCCAAATTGAAAGGTCAGA 58.607 37.500 0.00 0.00 34.49 3.27
301 330 9.299276 GACGAAGAAAACTAAAACTAAATCGAC 57.701 33.333 0.00 0.00 0.00 4.20
315 344 4.617959 TGACGATGAAGACGAAGAAAACT 58.382 39.130 0.00 0.00 34.70 2.66
316 345 4.966850 TGACGATGAAGACGAAGAAAAC 57.033 40.909 0.00 0.00 34.70 2.43
317 346 4.388773 CCATGACGATGAAGACGAAGAAAA 59.611 41.667 0.00 0.00 34.70 2.29
354 383 5.049828 TGAAGATATATTCACACAGGCACG 58.950 41.667 8.69 0.00 34.31 5.34
405 436 4.756135 AGCGCTAGTAGTAAGATCTGGTAC 59.244 45.833 8.99 0.00 0.00 3.34
467 516 6.721208 TGAGATTACTTCATTGAAAAAGCCCT 59.279 34.615 0.01 0.00 0.00 5.19
468 517 6.808704 GTGAGATTACTTCATTGAAAAAGCCC 59.191 38.462 0.01 0.00 0.00 5.19
469 518 6.808704 GGTGAGATTACTTCATTGAAAAAGCC 59.191 38.462 0.01 0.00 0.00 4.35
470 519 6.808704 GGGTGAGATTACTTCATTGAAAAAGC 59.191 38.462 0.01 1.61 0.00 3.51
471 520 7.023575 CGGGTGAGATTACTTCATTGAAAAAG 58.976 38.462 0.01 0.00 0.00 2.27
472 521 6.488683 ACGGGTGAGATTACTTCATTGAAAAA 59.511 34.615 0.01 0.00 0.00 1.94
496 552 1.756375 GCACAGTGATGGCGATCGAC 61.756 60.000 21.57 18.80 0.00 4.20
542 598 2.099921 ACGCTGTAGGATGTAGCAAGAG 59.900 50.000 0.00 0.00 37.29 2.85
647 704 1.975407 CTGAGGTTTGGCAGGGCAG 60.975 63.158 0.00 0.00 0.00 4.85
648 705 2.115910 CTGAGGTTTGGCAGGGCA 59.884 61.111 0.00 0.00 0.00 5.36
649 706 3.376918 GCTGAGGTTTGGCAGGGC 61.377 66.667 0.00 0.00 32.83 5.19
650 707 1.676967 GAGCTGAGGTTTGGCAGGG 60.677 63.158 0.00 0.00 32.83 4.45
651 708 0.959372 CTGAGCTGAGGTTTGGCAGG 60.959 60.000 0.00 0.00 32.83 4.85
768 835 4.322273 CCGATTCTAGCTATGGCAGATCAA 60.322 45.833 3.10 0.00 41.70 2.57
786 857 4.073549 CGAACTAGTATCTCCCTCCGATT 58.926 47.826 0.00 0.00 0.00 3.34
789 860 1.536331 GCGAACTAGTATCTCCCTCCG 59.464 57.143 0.00 0.00 0.00 4.63
816 887 2.158813 AGAGCTCGTGGGTTTCTTGAAA 60.159 45.455 8.37 0.00 0.00 2.69
828 899 2.030717 AGTGTACTGTCAAGAGCTCGTG 60.031 50.000 21.96 21.96 0.00 4.35
880 951 9.549078 TGGTCAAACGACTGCAATAAATATATA 57.451 29.630 0.00 0.00 33.65 0.86
922 993 6.977502 CCGATGACATGGCATTAATAAACAAA 59.022 34.615 17.03 0.00 0.00 2.83
930 1001 1.675483 GCACCGATGACATGGCATTAA 59.325 47.619 17.03 0.00 0.00 1.40
941 1012 0.749049 CCTCAGATCTGCACCGATGA 59.251 55.000 18.36 0.00 0.00 2.92
960 1031 2.202676 CTCCTCGCCGCTTCTCAC 60.203 66.667 0.00 0.00 0.00 3.51
995 1068 1.884464 CCAGACATGTCCATCGCCG 60.884 63.158 22.21 2.70 0.00 6.46
1245 1318 2.754375 GAGGGGTGGCCGAAGAAA 59.246 61.111 0.00 0.00 0.00 2.52
1491 1564 2.876219 GCCTGCTGCTTCTGCTTC 59.124 61.111 0.00 0.00 40.48 3.86
1828 1904 1.696988 CCAAAACTAACATGCACGCC 58.303 50.000 0.00 0.00 0.00 5.68
1862 1939 2.268920 GGCGAGATGACCAAGCCA 59.731 61.111 0.00 0.00 46.48 4.75
1890 1967 3.056322 ACTGCGTACAAAGTAACCTAGGG 60.056 47.826 14.81 0.00 0.00 3.53
1893 1970 3.319755 GCACTGCGTACAAAGTAACCTA 58.680 45.455 0.00 0.00 0.00 3.08
1894 1971 2.140717 GCACTGCGTACAAAGTAACCT 58.859 47.619 0.00 0.00 0.00 3.50
1895 1972 2.589338 GCACTGCGTACAAAGTAACC 57.411 50.000 0.00 0.00 0.00 2.85
1925 2002 3.003068 GCTACTAGTGGATTACGCTCGAA 59.997 47.826 10.90 0.00 41.07 3.71
1959 2119 2.991250 ACCTCAGTCGCTAATGCAAAT 58.009 42.857 0.00 0.00 39.64 2.32
1963 2123 4.119862 TCAATTACCTCAGTCGCTAATGC 58.880 43.478 0.00 0.00 0.00 3.56
2031 2194 5.407407 TTTCAAACCTGCCAACTTTTGTA 57.593 34.783 0.00 0.00 32.02 2.41
2088 2251 9.959749 ACTTATGTTTTACAACCACAAACATAG 57.040 29.630 13.54 11.27 46.44 2.23
2108 2271 7.119116 TGGAGTAACACAAACATAGCACTTATG 59.881 37.037 0.00 0.00 43.96 1.90
2110 2273 6.526526 TGGAGTAACACAAACATAGCACTTA 58.473 36.000 0.00 0.00 0.00 2.24
2113 2276 5.880054 ATGGAGTAACACAAACATAGCAC 57.120 39.130 0.00 0.00 0.00 4.40
2114 2277 6.488344 TGAAATGGAGTAACACAAACATAGCA 59.512 34.615 0.00 0.00 0.00 3.49
2115 2278 6.908825 TGAAATGGAGTAACACAAACATAGC 58.091 36.000 0.00 0.00 0.00 2.97
2116 2279 8.900511 CATGAAATGGAGTAACACAAACATAG 57.099 34.615 0.00 0.00 41.79 2.23
2200 2399 7.199766 AGTATTTCTCAGCGAACTAGAATGAG 58.800 38.462 0.00 2.71 38.97 2.90
2202 2401 8.858003 TTAGTATTTCTCAGCGAACTAGAATG 57.142 34.615 0.00 0.00 0.00 2.67
2203 2402 9.871238 TTTTAGTATTTCTCAGCGAACTAGAAT 57.129 29.630 0.00 0.00 0.00 2.40
2248 2447 4.544564 AGTAGATATGACCAGTGACCCT 57.455 45.455 0.00 0.00 0.00 4.34
2252 2451 9.156940 ACTAGTACTAGTAGATATGACCAGTGA 57.843 37.037 29.96 0.00 43.98 3.41
2268 2467 7.816513 GGCCGGGATTTTATAAACTAGTACTAG 59.183 40.741 25.30 25.30 39.04 2.57
2270 2469 6.464892 GGGCCGGGATTTTATAAACTAGTACT 60.465 42.308 2.18 0.00 0.00 2.73
2271 2470 5.702670 GGGCCGGGATTTTATAAACTAGTAC 59.297 44.000 2.18 0.00 0.00 2.73
2272 2471 5.369110 TGGGCCGGGATTTTATAAACTAGTA 59.631 40.000 2.18 0.00 0.00 1.82
2273 2472 4.166531 TGGGCCGGGATTTTATAAACTAGT 59.833 41.667 2.18 0.00 0.00 2.57
2275 2474 4.792513 TGGGCCGGGATTTTATAAACTA 57.207 40.909 2.18 0.00 0.00 2.24
2277 2476 3.447944 TGTTGGGCCGGGATTTTATAAAC 59.552 43.478 2.18 0.00 0.00 2.01
2280 2479 2.242708 ACTGTTGGGCCGGGATTTTATA 59.757 45.455 2.18 0.00 0.00 0.98
2281 2480 1.006639 ACTGTTGGGCCGGGATTTTAT 59.993 47.619 2.18 0.00 0.00 1.40
2282 2481 0.406361 ACTGTTGGGCCGGGATTTTA 59.594 50.000 2.18 0.00 0.00 1.52
2283 2482 0.898326 GACTGTTGGGCCGGGATTTT 60.898 55.000 2.18 0.00 0.00 1.82
2284 2483 1.304134 GACTGTTGGGCCGGGATTT 60.304 57.895 2.18 0.00 0.00 2.17
2285 2484 1.863155 ATGACTGTTGGGCCGGGATT 61.863 55.000 2.18 0.00 0.00 3.01
2286 2485 0.986019 TATGACTGTTGGGCCGGGAT 60.986 55.000 2.18 0.00 0.00 3.85
2287 2486 0.986019 ATATGACTGTTGGGCCGGGA 60.986 55.000 2.18 0.00 0.00 5.14
2288 2487 0.535102 GATATGACTGTTGGGCCGGG 60.535 60.000 2.18 0.00 0.00 5.73
2289 2488 0.469917 AGATATGACTGTTGGGCCGG 59.530 55.000 0.00 0.00 0.00 6.13
2290 2489 2.213499 GAAGATATGACTGTTGGGCCG 58.787 52.381 0.00 0.00 0.00 6.13
2292 2491 3.878778 ACTGAAGATATGACTGTTGGGC 58.121 45.455 0.00 0.00 0.00 5.36
2340 2734 7.463515 CGCACGACAGTAATGTTGTATTCATTA 60.464 37.037 15.48 0.00 36.92 1.90
2341 2735 6.542852 GCACGACAGTAATGTTGTATTCATT 58.457 36.000 15.48 0.00 38.72 2.57
2342 2736 5.220397 CGCACGACAGTAATGTTGTATTCAT 60.220 40.000 15.48 0.00 34.85 2.57
2349 3354 0.179225 GCCGCACGACAGTAATGTTG 60.179 55.000 9.00 9.00 0.00 3.33
2395 3400 2.032030 GTGCATGAGCGTTAGTTGTGTT 60.032 45.455 0.00 0.00 46.23 3.32
2427 3432 4.175787 ACGAAGGAAGTACTTGTAGCTG 57.824 45.455 14.14 1.01 0.00 4.24
2433 3438 8.610035 ACTAAAAAGAAACGAAGGAAGTACTTG 58.390 33.333 14.14 0.12 0.00 3.16
2439 3444 6.136743 GCAGACTAAAAAGAAACGAAGGAAG 58.863 40.000 0.00 0.00 0.00 3.46
2440 3445 5.587043 TGCAGACTAAAAAGAAACGAAGGAA 59.413 36.000 0.00 0.00 0.00 3.36
2441 3446 5.120399 TGCAGACTAAAAAGAAACGAAGGA 58.880 37.500 0.00 0.00 0.00 3.36
2442 3447 5.418310 TGCAGACTAAAAAGAAACGAAGG 57.582 39.130 0.00 0.00 0.00 3.46
2445 3450 9.210329 TGTTATATGCAGACTAAAAAGAAACGA 57.790 29.630 0.00 0.00 0.00 3.85
2446 3451 9.988350 ATGTTATATGCAGACTAAAAAGAAACG 57.012 29.630 0.00 0.00 0.00 3.60
2457 3462 9.182214 ACTTTGATCAAATGTTATATGCAGACT 57.818 29.630 20.76 0.00 0.00 3.24
2458 3463 9.443283 GACTTTGATCAAATGTTATATGCAGAC 57.557 33.333 20.76 2.27 0.00 3.51
2459 3464 9.176460 TGACTTTGATCAAATGTTATATGCAGA 57.824 29.630 20.76 0.00 0.00 4.26
2460 3465 9.791820 TTGACTTTGATCAAATGTTATATGCAG 57.208 29.630 20.76 7.48 35.65 4.41
2635 3640 9.554395 TCCGCATATAAGATTTGATTAAAGTCA 57.446 29.630 0.00 0.00 0.00 3.41
2637 3642 9.561069 ACTCCGCATATAAGATTTGATTAAAGT 57.439 29.630 0.00 0.00 0.00 2.66
2644 3649 9.607988 TCTTTTTACTCCGCATATAAGATTTGA 57.392 29.630 0.00 0.00 0.00 2.69
2648 3653 8.548721 CGTTTCTTTTTACTCCGCATATAAGAT 58.451 33.333 0.00 0.00 0.00 2.40
2649 3654 7.760794 TCGTTTCTTTTTACTCCGCATATAAGA 59.239 33.333 0.00 0.00 0.00 2.10
2650 3655 7.902032 TCGTTTCTTTTTACTCCGCATATAAG 58.098 34.615 0.00 0.00 0.00 1.73
2651 3656 7.830940 TCGTTTCTTTTTACTCCGCATATAA 57.169 32.000 0.00 0.00 0.00 0.98
2652 3657 7.830940 TTCGTTTCTTTTTACTCCGCATATA 57.169 32.000 0.00 0.00 0.00 0.86
2653 3658 6.730960 TTCGTTTCTTTTTACTCCGCATAT 57.269 33.333 0.00 0.00 0.00 1.78
2654 3659 6.347888 CCTTTCGTTTCTTTTTACTCCGCATA 60.348 38.462 0.00 0.00 0.00 3.14
2655 3660 5.427036 TTTCGTTTCTTTTTACTCCGCAT 57.573 34.783 0.00 0.00 0.00 4.73
2656 3661 4.260866 CCTTTCGTTTCTTTTTACTCCGCA 60.261 41.667 0.00 0.00 0.00 5.69
2657 3662 4.024641 TCCTTTCGTTTCTTTTTACTCCGC 60.025 41.667 0.00 0.00 0.00 5.54
2658 3663 5.235831 ACTCCTTTCGTTTCTTTTTACTCCG 59.764 40.000 0.00 0.00 0.00 4.63
2659 3664 6.615264 ACTCCTTTCGTTTCTTTTTACTCC 57.385 37.500 0.00 0.00 0.00 3.85
2684 3689 9.374838 TGACGCTCTAAGTATCGTATATTCATA 57.625 33.333 0.00 0.00 35.12 2.15
2685 3690 8.265165 TGACGCTCTAAGTATCGTATATTCAT 57.735 34.615 0.00 0.00 35.12 2.57
2686 3691 7.662604 TGACGCTCTAAGTATCGTATATTCA 57.337 36.000 0.00 0.00 35.12 2.57
2687 3692 9.635632 GTATGACGCTCTAAGTATCGTATATTC 57.364 37.037 0.00 0.00 35.12 1.75
2688 3693 9.159364 TGTATGACGCTCTAAGTATCGTATATT 57.841 33.333 0.00 0.00 35.12 1.28
2689 3694 8.713737 TGTATGACGCTCTAAGTATCGTATAT 57.286 34.615 0.00 0.00 35.12 0.86
2690 3695 8.713737 ATGTATGACGCTCTAAGTATCGTATA 57.286 34.615 0.00 0.00 35.12 1.47
2691 3696 7.333672 TGATGTATGACGCTCTAAGTATCGTAT 59.666 37.037 0.00 0.00 35.12 3.06
2692 3697 6.647895 TGATGTATGACGCTCTAAGTATCGTA 59.352 38.462 0.00 0.00 35.12 3.43
2693 3698 5.469084 TGATGTATGACGCTCTAAGTATCGT 59.531 40.000 0.00 0.00 37.92 3.73
2694 3699 5.928153 TGATGTATGACGCTCTAAGTATCG 58.072 41.667 0.00 0.00 0.00 2.92
2695 3700 8.749841 ATTTGATGTATGACGCTCTAAGTATC 57.250 34.615 0.00 0.00 0.00 2.24
2698 3703 8.982685 CATTATTTGATGTATGACGCTCTAAGT 58.017 33.333 0.00 0.00 0.00 2.24
2699 3704 7.954248 GCATTATTTGATGTATGACGCTCTAAG 59.046 37.037 0.00 0.00 0.00 2.18
2700 3705 7.440856 TGCATTATTTGATGTATGACGCTCTAA 59.559 33.333 0.00 0.00 0.00 2.10
2701 3706 6.928492 TGCATTATTTGATGTATGACGCTCTA 59.072 34.615 0.00 0.00 0.00 2.43
2702 3707 5.759763 TGCATTATTTGATGTATGACGCTCT 59.240 36.000 0.00 0.00 0.00 4.09
2703 3708 5.989249 TGCATTATTTGATGTATGACGCTC 58.011 37.500 0.00 0.00 0.00 5.03
2704 3709 6.564709 ATGCATTATTTGATGTATGACGCT 57.435 33.333 0.00 0.00 32.22 5.07
2705 3710 6.306356 GGAATGCATTATTTGATGTATGACGC 59.694 38.462 12.97 0.00 33.48 5.19
2706 3711 7.324375 GTGGAATGCATTATTTGATGTATGACG 59.676 37.037 12.97 0.00 33.48 4.35
2707 3712 8.136800 TGTGGAATGCATTATTTGATGTATGAC 58.863 33.333 12.97 0.00 33.48 3.06
2708 3713 8.235359 TGTGGAATGCATTATTTGATGTATGA 57.765 30.769 12.97 0.00 33.48 2.15
2709 3714 9.135843 GATGTGGAATGCATTATTTGATGTATG 57.864 33.333 12.97 0.00 33.48 2.39
2710 3715 8.862085 TGATGTGGAATGCATTATTTGATGTAT 58.138 29.630 12.97 0.00 34.42 2.29
2711 3716 8.235359 TGATGTGGAATGCATTATTTGATGTA 57.765 30.769 12.97 0.00 0.00 2.29
2712 3717 7.114866 TGATGTGGAATGCATTATTTGATGT 57.885 32.000 12.97 0.00 0.00 3.06
2713 3718 7.207383 ACTGATGTGGAATGCATTATTTGATG 58.793 34.615 12.97 2.69 0.00 3.07
2714 3719 7.356089 ACTGATGTGGAATGCATTATTTGAT 57.644 32.000 12.97 1.12 0.00 2.57
2715 3720 6.458615 CGACTGATGTGGAATGCATTATTTGA 60.459 38.462 12.97 0.00 0.00 2.69
2716 3721 5.684184 CGACTGATGTGGAATGCATTATTTG 59.316 40.000 12.97 2.41 0.00 2.32
2717 3722 5.221106 CCGACTGATGTGGAATGCATTATTT 60.221 40.000 12.97 0.00 0.00 1.40
2718 3723 4.276678 CCGACTGATGTGGAATGCATTATT 59.723 41.667 12.97 0.00 0.00 1.40
2719 3724 3.817084 CCGACTGATGTGGAATGCATTAT 59.183 43.478 12.97 1.51 0.00 1.28
2720 3725 3.118445 TCCGACTGATGTGGAATGCATTA 60.118 43.478 12.97 0.00 0.00 1.90
2721 3726 2.019249 CCGACTGATGTGGAATGCATT 58.981 47.619 12.83 12.83 0.00 3.56
2722 3727 1.210234 TCCGACTGATGTGGAATGCAT 59.790 47.619 0.00 0.00 0.00 3.96
2723 3728 0.612744 TCCGACTGATGTGGAATGCA 59.387 50.000 0.00 0.00 0.00 3.96
2724 3729 1.959042 ATCCGACTGATGTGGAATGC 58.041 50.000 0.00 0.00 34.97 3.56
2725 3730 5.144692 AGATATCCGACTGATGTGGAATG 57.855 43.478 0.00 0.00 34.97 2.67
2726 3731 5.815233 AAGATATCCGACTGATGTGGAAT 57.185 39.130 0.00 0.00 34.97 3.01
2727 3732 6.724893 TTAAGATATCCGACTGATGTGGAA 57.275 37.500 0.00 0.00 34.97 3.53
2728 3733 6.724893 TTTAAGATATCCGACTGATGTGGA 57.275 37.500 0.00 0.00 34.76 4.02
2729 3734 7.657354 TGAATTTAAGATATCCGACTGATGTGG 59.343 37.037 0.00 0.00 34.76 4.17
2730 3735 8.593492 TGAATTTAAGATATCCGACTGATGTG 57.407 34.615 0.00 0.00 34.76 3.21


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.