>input_sequence_69095
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--------------------------------ATGGACATGTCTGGCGTGAGCGCGGTGGACAGCCCTGGAGGCGGCAGC
GCGTCGTCGGTGTTGGGAGCGCCGCGGCCGAGCAGGTACGAGTCGCAGAAGCGGCGGGACTGGCAGACGTTCGGGCAGTA
CCTACGGAACCACCGCCCCCCGCTGGAGCTGGCGCGGTGCAGCGGCGCGCACGTGCTGGAGTTCCTCCGGTACCTGGACC
AGTTCGGCAAGACCAAGGTGCACAACGCAGGGTGCCCTTTCTTCGGCCACCCCTCGCCGCCGGCGCCATGCCCGTGCCCG
CTGAAGCAGGCGTGGGGGTCCCTGGACGCGCTGGTGGGCCGCCTCCGCGCCGCCTTCGAGGAGCACGGCGGCCGCCCGGA
GGCCAACCCGTTCGGGGCGCGCGCCGTCAGGCTCTACCTCCGCGACGTCCGCGACGGCCAGGCCAAGGCGCGCGGCATCG
CCTACGAGAAGAAGCGCCGGAAGAGGCACCCCCAGACGTCGTCGAAGCAGAAGCAGCAGGCGGAGCCGGCCTCCGCCGCG
GCCAGCCCGGCGCCCGTGGACAGGCCCGACATGCGGCATGGCATGCTGGAGCAGACGCACTACCTGTTCCCCATGCACGC
GCACCTGTTCCAGGGACACTTCCTGGCGCCGGCGCCCGACGGCGACCCCGTGGGAGCCCTGGATGGCGTAGTCC---CCG
CCGGGGATGACATCGTGATGGTGATGGCGGCCGCGGCAGCCGCCGCCGAGGCGCACGCTGCCGGGTGCATGATGCCGCTG
TCCGTGTTCAACTAG-----------------------------------------------------------------
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>chr6A_1_TraesCS6A01G139700
ATCGTGCCGGCTGATCGAGCAGCTGGTTTTCCTGGTTGCTTGCCTTCTTGCTCGTCGTCGCCCACTTTCATCGTCTTCTT
GGTGAGTGCGTACGTTTTCTGCTTCATCGGGTTGCAGATTTGCGCGCGCTTTCCTCTCGATCTTGATCCATGCTCTCTGA
TTTC------------TGCTTGATTGATTATGTGCCTTGAACTGCTGCATCTTGGCATGTGTTAGTCAAATCTAGGGCAT
GCTTGTCTGA----------------CCTTTCAATTTGGGAATCAAGAACCAAGAAGCTTTATTTAATCATGCGCCTCCC
CTCCCCCCGGTCGATTTAGTTTTAGTTTTCTTCGTCTTCATCGTCATGGACTAGATTTTTTGCGTGCCTGTGTGAA--TA
TATCTTCACTGTACCAAGAAAGAAAGAAAAAGCTAGTACCAGATCTTAC------------------TACTAGCGCTAGC
TAGGGTTCCATTAATTCCATCCATGCGTGCGAGTTAGGGCT-------TTTTCAATGAAGTAATCTCACCCGTCGATCGC
CATCACTGTGCGTCTGCGCAGGTAGCTAGCCTCGGAGCTCTTGCTACATCCTACAGCGTGTTTCTGTTTTTGCCATGTCC
CGTGTTGTTTTTTCCCCTTCTGCATGTCTCAGGTTGTGTCAGCTCG-TTGCATCATTGCATGGCTGCCCTGCCAAACCTC
AGCTCAGC--------TGAGATCGTAGGTTTGAGAAACATGCGGCCTGAGAAACACTTGTCCTCATGCTAGTTAG--GTG
TCAGCTAACCTGAAACCCTAGTTCTCGCTGAATCTTGATCTGCCA----TAGCTAGAATCGGAGGGAGATACTAGTTCGC
CAAGAATTTCAAGAAACCCACGAGCTCTTGACAGTACACTGGGACACTAAGCCATAAATATAGCTATAGATATATATTTA
TTGCAGTCGTTTGACCATTGGTCAAGGCCGGCTTTGTTTATTAATGCCATGTCATCGGTGCAGATCTGAGG--TGAGAAG
CGGCGAGGAGGCAAGTTGGTCGGCCGGCGGCGATGGACATGTCTGGCGTGAGCGCGGTGGACAGCCCTGGAGGCGGCAGC
GCGTCGTCGGTGTTGGGAGCGCCGCGGCCGAGCAGGTACGAGTCGCAGAAGCGGCGGGACTGGCAGACGTTCGGGCAGTA
CCTACGGAACCACCGCCCCCCGCTGGAGCTGGCGCGGTGCAGCGGCGCGCACGTGCTGGAGTTCCTCCGGTACCTGGACC
AGTTCGGCAAGACCAAGGTGCACAACGCAGGGTGCCCTTTCTTCGGCCACCCCTCGCCGCCGGCGCCATGCCCGTGCCCG
CTGAAGCAGGCGTGGGGGTCCCTGGACGCGCTGGTGGGCCGCCTCCGCGCCGCCTTCGAGGAGCACGGCGGCCGCCCGGA
GGCCAACCCGTTCGGGGCGCGCGCCGTCAGGCTCTACCTCCGCGACGTCCGCGACGGCCAGGCCAAGGCGCGCGGCATCG
CCTACGAGAAGAAGCGCCGGAAGAGGCACCCCCAGACGTCGTCGAAGCAGAAGCAGCAGGCGGAGCCGGCCTCCGCCGCG
GCCAGCCCGGCGCCCGTGGACAGGCCCGACATGCGGCATGGCATGCTGGAGCAGACGCACTACCTGTTCCCCATGCACGC
GCACCTGTTCCAGGGACACTTCCTGGCGCCGGCGCCCGACGGCGACCCCGTGGGAGCCCTGGATGGCGTAGTCC---CCG
CCGGGGATGACATCGTGATGGTGATGGCGGCCGCGGCAGCCGCCGCCGAGGCGCACGCTGCCGGGTGCATGATGCCGCTG
TCCGTGTTCAACTAGCTAGCTCGACGCTGAGAATTAAGTAATTAAGTAGGCCTAAGTAAGTCAGGCGTGCATGTTAGT-T
TTGGCAATGGCGATGCCTTGGCTTGGTCATCTCGCCATTTGAACACCCCTAGGTTACTTTGTACGCAGTGCGCTCCATCT
CTTCGAGCGTAATCCACTAGTA----------------------------------------------------------
-------------------------GCTCTTTTGGTGAATTTGCATTAGCGACTGAGGTAATTGATCATGGTTATCTGTA
ATG---TAATCTGCATGGTTGTGTACGTGAAGTTACAAAAGTTGGCAGGTTTGAAATGTTGGCTTAATGAAACTCACAGC
CAATTAAGTGCTATGTTTGTGGTTGTAAAACATAAGTGC------------------------------------TATGT
TTGTGTTACTCCATTTCATGGTTAGCTAGCACAGAATGTTTCTCTAATAAGTGTCTAATTTAGTTCACCAAGTCATTTCT
CATTCTAGTTCGCTGAGAAATACTAAAAAATAGTGAATATAAATGTAGGGTCACTGGTCATATCTACTAGTACTAGTTTA
TAAAATCCCGG---------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------CCCAACAGTCATATCTTCAGTTATACTTTACTTT
TCTATTCGTATATTAAT---------------------------------------------------------------
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--------------------------------------------GAA------------------------TACAACATT
ACTGTCGTGCGGCGATGCTTCTGATGGCATACCTAGCCAAACACAACTAACGCTCATGCACCTGTCGGATCCAGCTACAA
GTACTTCCTTCGTTTCTTTTTAGTCTGCATATAACATTTGATCAAAGTCAAATTTTATTAATTTTGATTAAATTTATAAA
AAAATATTAAGATTCACAATATGAAATCAATATTACTAGATGCATCATGAAATGTATTTTCATACTTTGTGTAGATGTTC
ATATTTTTCAATATAAATTTAGTCAAACATTGTGTAGTTTGACTTTAATCAAATCTTATATGCGGAGTAAAAAGAAACGA
AAGGAGTATATGAATATACGATACTTAGAGCGTCATACATCAAATAATGCATTCCACATCAGTCGGATATCTTAAATTCA
TATTATTACGTGCAACGTAAAACG
>chr6D_1
ATCGTGCCGGCTGATCGAGCAGCCGGTGTTCTTCTCTGCTTGCCTTCTTGTTCGTCGTCTCCCACTTTCATCGTCTTCTT
GGTGAGTACGTACGTTTTCTGCTTCATCGGATTGCAGATTTGCGCGCGATTCCCTCTTGATCTTGATCCATGCTCTTTGA
TTTTGCACCGTCGGTGTGCTTGATTGATTATGTGCCATGAACTGCTGCATCTTCGCATGTGTTAGTCAAATCTAGGGCAT
GCTTGCATGAGCATGACTAAACCTTTCCTTTCAATTTGGGAATCAAGAACCAAGAAGCTTTATTTAATCATGCGCCTCCC
CTCCCCCCGATCGATTTAGTTTT---TTTCTTCGTCTTCATCATCATGGACTAGATTTTTTTGTG-------------TA
TATCTTCATTGTACCAAGAAAGAAAGAAAAAGCTACCAGATCT--TTAC------------------TACTAGCGCTAGC
TAGGGTTCCATTAATTCCATCCGTGCGTGCGAGTTGACCGGTCAGGGCTTTTCAATGAAGTAATCTCACCCATCGATCGC
CATCACTGTGCGTCTGTGCAGGTAGCTAGCCTCAGAGTTCTTGCTACATCCTGCAGCGTGTTTCTGTTTTTGCCATGTCC
TGTGTTGTTTTTTCCCCTACTGCATGTCTCAGGTTGTGTCAGCTCG-TTGCATCATTGCATGG-----CTGCCAAAGCTC
AGCTCAGC--------TCAGATCGTAGGTTTGAGAAACATGCGGCCTGAGAAACACTTGTCCTCAAGCTAGTTAGGCGTG
TCAGCTAACCTGAAACCCTAGTTCTCGCTGAATCCTCATCTGCCGTAGCTAGCTAGGATTGGAGGGAGATACTACTTCGC
CAAGAACTTCAAGAAACCGACGAGCTCTTGAGAGTACACTGGGACACTATAAGCC--ATATAGCTATACAGATATATTTA
TTGCAGTCGTTTGACCATTGGTCAAGGCCAGCATTGTTTACTAAGGCCATGCCATCGGTGCAGATCTGAGCGCTGAGAAC
CGGCGAGGAGGCAAGTTGGTCGGCCGGTGGCGATGGAAATGTCTGGCGTGAGCGCGGTGGACAGCCCTGGAAGCGGCAGC
GCGTCGTCGGCGCTGGGAGCGCCGCGGCCGAGCAGGTACGAGTCGCAGAAGCGGCGGGACTGGCAGACGTTCGGGCAGTA
CCTACGGAACCACCGCCCCCCGCTGGAGCTGGCGCGGTGCAGCGGCGCGCACGTGCTGGAGTTCCTCCGGTACCTGGACC
AGTTCGGCAAGACCAAGGTGCACACCGCGGGGTGCCCCTTCTTCGGCCACCCATCGCCGCCGGCCCCGTGCCCGTGCCCG
CTGAAGCAGGCGTGGGGGTCCCTGGACGCGCTGGTGGGCCGTCTCCGCGCCGCCTTCGAGGAGCACGGCGGACGCCCGGA
GGCCAACCCGTTCGGGGCGCGCGCCGTGAGGCTCTACCTCCGCGACGTCCGCGACGGCCAGGCCAAGGCGCGCGGCATCG
CCTACGAGAAGAAGCGCCGGAAGAGGCACCCCCAGACGTCGTCCAAGCAGAAGCAGCAGGCGGCGGCGGCCTCCGCCGCG
GCCAGCCCGGCGCCCGTGGACAGGCCCGACATGCGGCATGGCATGCTGGAGCAGACGCACTACCTGTTCCCCATGCACGC
GCACCTGTTCCAGGGACACTTCCTGGCGCCGGCGCCCGACGGCGACCCCGTGGGAGCCCTGGATGGCGTAGTCC---CCG
CCGGGGATGACATCGTGATGGTGATGGCGGCCGCGGCAGCCGCCGCCGAGGCGCACGCTGCCGGGTGCATGATGCCGCTG
TCCGTGTTCAACTAGCTAGCTCGACGCAGAGAATCAAGTAATTAAGTAGGCCTAAGTAAGTCAAGCGTGCATGTAG--TT
TTGGCAATGGCGATGCCTCGGCTTGGTCATCTCGCCATTTGAACACACCCCTAGG--TTTGTACGCAGTGCGCGCCAACT
CGTCGAGCGTAATCCACTAGTA----------------------------------------------------------
-------------------------GCTCTTTTG---------CATTAGCGACTGAGGTAATTAGTCATGGTTATCTGTA
ATGTAC---TCTGCATGGTTGTGTACGTGAAGTCACGGAAGTTGGCAGGTTTGAAATGTTGGCTTAATGAAACTCACAGC
CAATTAAGT----------------------------------------------------------------GTTATGT
TTGTGTTACTCCATTTCATGGTTAGCTAGCACAGGATGTTTCTCTGATAAGTGTCTAATTTAGTTCACCAAGTCATTTAT
TTTTCTAGTTCGCTGAGAAATATTAAAAA-TAGTGAATATAAATGTTGGGACACATGTCATATCTAGTTTGTCAAATTAG
GTTTTCTAAGTCTCAGTCGGCTGAGTTGATGCTATATTTCTTTGATCTTTTAC-ACAAAATGTTTTTTTTCAGTTTTTTC
TTCTTTAATCTTATATACTATATTA-------------------------------------------------------
------------TTGGACTGAGACCTAGCCACACCCTAAAATCAGTCCCAACGGTCATATCTTCAAC--TACTTTATTTT
CCTACTCGTATATAGCGAG-------------------------------------------------------------
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-----------------------------------------------------------------------TACTCCCTT
CGTTTCTAAATATAAGTCTTTGTAAAGATTTTACCATGAACCACGTATGGATGTAGATGCATTTTAAAATGTAGATTGAC
ATGGTGAAATCTCTACAAAGACTTATATTTAAGTAACGGAGGGAGTA------------------------TATAATATT
ACTATC----------GCTTCTGATGGCATACCTAGCCAGACACAACTAACGCTCATGCACCTGTCGGATCGAGCTAGAA
GTA-----------------------------------------------------------------------------
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>chr6B_1
ATCGTGCCGGCTGATCGAGCAGCTGGTGTTCCTGGTTGCCTGCCTTCTTGTTCGTCGTCTCCCACCTTCATCGTCTTCTT
GGTGAGTGCGTACGTTTTCTGCTTCATCGGGTTGCAGATTTGCGCGCGCTTTCCTCTCGATCTTGATCCATGCTCTCTGA
TT------------TGTCCTTGATTGATTATGTGCCTTGAACTGCTGCATCCTCGGATGTGTTAGTCAAATCTAGGGCAT
GCTTGCCTGAGCATGACTAAAT-----CTTTCAATTTGGGAATCAAGAACCAAGAAGCGTTATTTAGTCATGCACTCCCG
A----CCCTATCGATTTAG---T---TTTCTTCGTCTTCATCATCATCGACTAGGTTTTGTGTGTGTGTGTGTGAATATA
TCTTTTTACTGCACCAAGAAAGAAAGAAAAAGCTACTACCAGATCTTTACTAGCGCTTGCCAGGGAGTACTAGCGCTAGC
TAGGGTTCCATTAATTCCATCCAAGCGTGCGAGTTGACCGGTCAGAGGTTTTCAATGAAGTAATCTCACCCATCGATCGC
CATCACTGTGCTTCTGTGCAGGTAGCTAGCCTCAGAGTTCTTGCTACATCCTGCAGCATGTTTCTGTTTTTGCCATGTCC
CGTGTTGTTTTTTCCCCTTCTGCATGTCTCAGGTTGTGTCAGCTCATTTGCATCATTGCATGG-----CTGCCAAAGCTC
AGCTCAGCCGAGAGCCTGAGATCGTAGGTTTGAGAAACATGCG-CCTGAGAAACACTTGTCCTCATGC----TAG--GTG
TCAGCTAACCTGAAACCCTAGTTCTCGCTGAATCCTGATATGCCA----TGGCTAGGATTGGAGGGAGATACTAGTTCGC
CAAGAACTTCAAGAAACCGACGAGCTCTTGACAGTACACTGGGACACTATAAGCC--ATATGGCCATAGAAATATA-TTA
TTGCAGTTGTTTGACCATTGGTCAAGGCCGGCATTGTTTACTAATGCCATGCCATCGGTGCAGATCTGAGCGCTGAGAAC
CGGCGAGGAGGCAAGTTGGTCGGCCGGTGGCGATGGACATGTCTGGCGTGAGCGCGGTGGACAGCCCTGGAGGCGGCAGC
GCGTCGTCGGCGCTGGGAGCGCCGCGGCCGAGCAGGTACGAGTCGCAGAAGCGGCGGGACTGGCAGACGTTCGGACAGTA
CCTACGGAACCACCGCCCCCCGCTGGAGCTGGCGCGGTGCAGCGGCGCGCACGTGCTGGAGTTCCTCCGGTACCTGGACC
AGTTCGGCAAGACCAAGGTGCACGCCGCGGGGTGCCCCTTCTTCGGCCACCCCTCGCCGCCGGCCCCGTGCCCGTGCCCA
CTGAAGCAGGCGTGGGGCTCCCTGGATGCGCTGGTGGGCCGTCTCCGCGCCGCCTTCGAGGAGCACGGCGGCCGCCCGGA
GGCCAACCCGTTCGGGGCGCGCGCCGTCAGGCTCTACCTCCGCGACGTCCGCGACGGCCAGGCCAAGGCGCGCGGCATCG
CCTACGAGAAGAAGCGCCGGAAGAGGAACCCCCAGACGTCGTCCAAGCAGAAGCAGCAGCAGGCGGCGGCCGCCGCCGCG
GCCAGCCCGGCGCCCGTGGACAGGCCCGACATGCGGCATGGCATGCTGGAGCAGACGCACTACCTGTTCCCCATGCACGC
GCACCTGTTCCAGGGACACTTCCTGGCGCCGGCGCCCGACGGTGACCCCGTGGGAGCCCTAGATGGCGTAGTCCCGGCCG
CCGGGGATGACATCGTGATGGTGATGGCGGCCGCGGCCGCCGCCGCCGAGGCGCACGCTGCCGGGTGCATGATGCCGCTG
TCCGTGTTCAACTAGCTAGCTCGATGCAGACAATTAAGTAATTAAGTAGGCCTAAGTAAGTCAAGCGTGCATGTTAGTTT
TTGGCAATGGCGATGCCTCGGCTTGGTCATCTCGCCATTTGAACACACCCCTAGG--TTTGTACGCAGTGCGCGCCAACT
CGTCGAGCGTAATCCACTAGTACTCCCTCCTTAAACTAATATAAGAGCATTTAAATTACTACTTTAGTGATTTAAACGCT
CTTATATTAGTTTACAGAGGGAGTAGCTCTTTTGGTGATTTTACATTAGCGACTGAGGTAATTGATCATGGTCATCTGTA
ATGTAGTAATCTGCATGGTTGTGAACGTGAAGTCACAAAAGTTGGCAGGTTTGAAATGTTGGCTTAATGAAACTCATAGC
CAATTAAGTGTTATGTTTGTTCCCCGCAAAAAAAAAAAGTGTTATGTTTTTTTTTTTTTGGATATCTAGAAGTGTTATGT
TTGTGTTACTCCATTTCATGGTTAGCTAGCACAGGGTGTTTCTCTGATAAGTGTCTAATTTAGTTCACCAAGTCATTTAT
TTTTCTGGTTCGCTGAGAAATACTAAAATATAGTGAATATGCATGTTGGGACACTTGTCATATCTAGTTTATCAAATCAG
GTTTG-TAAGTCTCAGTCGACTGAGTTGATACTGTATTCCTTTGATCTTGTTGTACAAAATGTTCTTTTTCATTTTCTTT
AATACTTACAAAATTAATACAAAGTTAAGTCACTTATTTTGGTACTTATTTTTGATACTTATTTTAGGACGGAGGGAATA
TATCAGTGGACTTTGGACTGAGACCTAGCCACACTAC-AAATCAGTCTCAACAGTCATATTTTCAAC--TACTTTATCTT
CCTATTCGTGTATCTCTACTACTATTGTACACAAATTTTTGAACTTGAATTAGCTATCTAGCAAGACCCTGGAGTAGTTA
CAAGCCATATATTTGTTCCAGAAGCTAAACATCCACCGTTTATCAGTACCCAGCTCAAAAGATCTAACGGTTGATAATTC
ATGGGTTCATTATGTACGGATAGGCGCCAAAGCGACTCCACCAGCTTTCTGGAATGCTCCAAACTGACCCACACATGTGG
TGGTGCAGGAGTACGTAAGATCTTTTGTGGCTGTTTAGAACTTCAATTCTCAATGGCTGGAGGCTTAGAAGATCCGGCAA
ACAACAACGATAGACTATAGCTTTCTTAAAAAAAAGTAAAAAGCTATAGCTTTTATACAAATCAAAGCACTGAAATGTTT
GTATCCAGCAAACATTCGAACGCAGCAACTTTGACACTTCGACGGAATTTAACACTTATAGGCATGCATACTACTCCCTT
CGTACCAAAATATAAAATGTTTTTGCATTTCAAA-------------------------------------TAAATTCAC
AATGTGTTGATACTAAAAAGAATTAGTGAAGAACACGTGCATAGCACGTACCTTCTACTAGTAACGAGTAGTATAACATT
ACTGTCGTGCGGCGATGCTTCTTATGGCCTACCCAGCCTGACACAACTAACGCTCATGCACCCGTCGGATCGAGCTAGAA
GTA-----------------------------------------------------------------------------
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>SNPs
---------------------------S----------------------S--------S--------------------
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---S-------------------------------------------------S--------------------------
-----S--------------------------------------------------------------------------
---------S-------------SSS----------------S-------------------S---SS------------
-----------------------------------S--------------------------------------------
-----------------------------------SSSSSS------------------------------S--------
----------------S----------------S---S--------------S---------------------------
---------------------------------------------------------------SSSSS--------S---
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----------------------------------S---------------------S--S--------------------
------S-----------S------------------------------SSSSSSSS-------------S---------
--------------------------------S-------S----------S------------------S--------S
---------------------------S----------------------------------------------------
----------S-S-------------------------------------------------------------------
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------------------------S---S--------S--------------------------S--S------------
-----------------------------------------S--------------------------------------
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-------------------------------------------S-------------------S-S--------------
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---------------------------S-----------------------------------S----------------
------------------S---------------------------S--SSSSSSSS----------------S---S--
-S------------------------------------------------------------------------------
--------------------------------------S---S-------------------------------------
---------------------------------S----------------------------------------------
----------S---------SSSSSSS---S-S--SSSS-----------------------------------------
----------------------------------S----------S--------------------------------S-
SS--------------------------------------------S---S----S----------S-SSSS-S-S--SS
SSSSSSSSS-S---------------------------------------------------------------------
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-----------------------------------------------------------------SSSS-------S---
S------------SSS----------------------------------------------------------------
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-------------------------------------------------------------------------S------
---------------------------------------S-------------------------------S-----S--
---SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSS
>forward_51
-------------------------------CTGGTTGCTTGCCTTCTTGC-----------------------------
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>reverse_1904
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---------------------------------------------------------------GGCGTGCATGTTAGTTT
TGG-----------------------------------------------------------------------------
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