Multiple sequence alignment - TraesCS6A01G111600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G111600 chr6A 100.000 2858 0 0 1 2858 80810293 80807436 0.000000e+00 5278
1 TraesCS6A01G111600 chr6D 92.496 1959 84 26 680 2617 63332211 63330295 0.000000e+00 2745
2 TraesCS6A01G111600 chr6B 91.097 2033 103 41 375 2392 136798885 136796916 0.000000e+00 2680
3 TraesCS6A01G111600 chr6B 90.217 368 28 6 1504 1870 156279387 156279027 9.270000e-130 473
4 TraesCS6A01G111600 chr6B 86.250 160 19 2 83 239 136799037 136798878 1.360000e-38 171
5 TraesCS6A01G111600 chr3B 92.357 314 24 0 1513 1826 819915968 819916281 5.620000e-122 448
6 TraesCS6A01G111600 chr7A 94.355 248 14 0 1513 1760 648569603 648569356 5.780000e-102 381
7 TraesCS6A01G111600 chr1B 86.829 205 22 4 2571 2771 31827346 31827143 1.030000e-54 224


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G111600 chr6A 80807436 80810293 2857 True 5278.0 5278 100.0000 1 2858 1 chr6A.!!$R1 2857
1 TraesCS6A01G111600 chr6D 63330295 63332211 1916 True 2745.0 2745 92.4960 680 2617 1 chr6D.!!$R1 1937
2 TraesCS6A01G111600 chr6B 136796916 136799037 2121 True 1425.5 2680 88.6735 83 2392 2 chr6B.!!$R2 2309

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
234 238 0.110192 GCGTGTGCTAAAGGCTCAAC 60.11 55.0 0.0 0.0 44.42 3.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1931 1954 0.473326 ATCCCAGCTCATCCTTCTGC 59.527 55.0 0.0 0.0 0.0 4.26 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 4.742274 CACGACAAGTGGGTTCGA 57.258 55.556 0.00 0.00 46.77 3.71
19 20 3.210857 CACGACAAGTGGGTTCGAT 57.789 52.632 0.00 0.00 46.77 3.59
20 21 1.068474 CACGACAAGTGGGTTCGATC 58.932 55.000 0.00 0.00 46.77 3.69
21 22 0.966920 ACGACAAGTGGGTTCGATCT 59.033 50.000 0.00 0.00 0.00 2.75
22 23 2.094906 CACGACAAGTGGGTTCGATCTA 60.095 50.000 0.00 0.00 46.77 1.98
23 24 2.163815 ACGACAAGTGGGTTCGATCTAG 59.836 50.000 0.00 0.00 0.00 2.43
24 25 2.541556 GACAAGTGGGTTCGATCTAGC 58.458 52.381 0.00 0.00 0.00 3.42
25 26 2.166664 GACAAGTGGGTTCGATCTAGCT 59.833 50.000 0.00 0.00 0.00 3.32
26 27 3.362706 ACAAGTGGGTTCGATCTAGCTA 58.637 45.455 0.00 0.00 0.00 3.32
27 28 3.381908 ACAAGTGGGTTCGATCTAGCTAG 59.618 47.826 15.01 15.01 0.00 3.42
28 29 1.957877 AGTGGGTTCGATCTAGCTAGC 59.042 52.381 16.35 6.62 0.00 3.42
29 30 1.681793 GTGGGTTCGATCTAGCTAGCA 59.318 52.381 18.83 5.66 0.00 3.49
30 31 2.297597 GTGGGTTCGATCTAGCTAGCAT 59.702 50.000 18.83 10.23 0.00 3.79
31 32 2.297315 TGGGTTCGATCTAGCTAGCATG 59.703 50.000 18.83 9.09 0.00 4.06
32 33 2.297597 GGGTTCGATCTAGCTAGCATGT 59.702 50.000 18.83 0.00 0.00 3.21
33 34 3.570559 GGTTCGATCTAGCTAGCATGTC 58.429 50.000 18.83 9.86 0.00 3.06
34 35 3.004839 GGTTCGATCTAGCTAGCATGTCA 59.995 47.826 18.83 0.00 0.00 3.58
35 36 4.321601 GGTTCGATCTAGCTAGCATGTCAT 60.322 45.833 18.83 2.91 0.00 3.06
36 37 4.431661 TCGATCTAGCTAGCATGTCATG 57.568 45.455 18.83 8.56 0.00 3.07
37 38 3.192212 TCGATCTAGCTAGCATGTCATGG 59.808 47.826 18.83 4.89 0.00 3.66
38 39 3.056962 CGATCTAGCTAGCATGTCATGGT 60.057 47.826 20.57 20.57 44.27 3.55
39 40 3.740631 TCTAGCTAGCATGTCATGGTG 57.259 47.619 24.44 15.88 41.73 4.17
40 41 2.366590 TCTAGCTAGCATGTCATGGTGG 59.633 50.000 24.44 22.42 41.73 4.61
41 42 0.914644 AGCTAGCATGTCATGGTGGT 59.085 50.000 24.44 16.93 41.73 4.16
42 43 1.019673 GCTAGCATGTCATGGTGGTG 58.980 55.000 24.44 15.74 41.73 4.17
43 44 1.679944 GCTAGCATGTCATGGTGGTGT 60.680 52.381 24.44 0.00 41.73 4.16
44 45 2.283298 CTAGCATGTCATGGTGGTGTC 58.717 52.381 24.44 2.44 41.73 3.67
45 46 0.322816 AGCATGTCATGGTGGTGTCC 60.323 55.000 16.54 0.00 39.92 4.02
46 47 1.315257 GCATGTCATGGTGGTGTCCC 61.315 60.000 14.64 0.00 0.00 4.46
47 48 1.026182 CATGTCATGGTGGTGTCCCG 61.026 60.000 4.78 0.00 0.00 5.14
48 49 1.488705 ATGTCATGGTGGTGTCCCGT 61.489 55.000 0.00 0.00 0.00 5.28
49 50 1.671054 GTCATGGTGGTGTCCCGTG 60.671 63.158 0.00 0.00 39.83 4.94
50 51 2.144078 TCATGGTGGTGTCCCGTGT 61.144 57.895 0.00 0.00 39.53 4.49
51 52 1.965930 CATGGTGGTGTCCCGTGTG 60.966 63.158 0.00 0.00 34.82 3.82
52 53 3.842925 ATGGTGGTGTCCCGTGTGC 62.843 63.158 0.00 0.00 0.00 4.57
63 64 2.279517 CGTGTGCGGCCTCCTATC 60.280 66.667 0.00 0.00 0.00 2.08
64 65 2.279517 GTGTGCGGCCTCCTATCG 60.280 66.667 0.00 0.00 0.00 2.92
65 66 3.536917 TGTGCGGCCTCCTATCGG 61.537 66.667 0.00 0.00 0.00 4.18
66 67 3.224324 GTGCGGCCTCCTATCGGA 61.224 66.667 0.00 0.00 37.82 4.55
67 68 2.203640 TGCGGCCTCCTATCGGAT 60.204 61.111 0.00 0.00 39.01 4.18
68 69 2.262915 GCGGCCTCCTATCGGATG 59.737 66.667 0.00 0.00 39.01 3.51
69 70 2.973899 CGGCCTCCTATCGGATGG 59.026 66.667 0.00 0.00 39.01 3.51
70 71 1.908793 CGGCCTCCTATCGGATGGT 60.909 63.158 0.00 0.00 39.01 3.55
71 72 1.674057 GGCCTCCTATCGGATGGTG 59.326 63.158 0.00 1.87 39.01 4.17
72 73 1.674057 GCCTCCTATCGGATGGTGG 59.326 63.158 16.56 16.56 39.01 4.61
73 74 1.674057 CCTCCTATCGGATGGTGGC 59.326 63.158 0.00 0.00 39.01 5.01
74 75 1.674057 CTCCTATCGGATGGTGGCC 59.326 63.158 0.00 0.00 39.01 5.36
75 76 0.833834 CTCCTATCGGATGGTGGCCT 60.834 60.000 3.32 0.00 39.01 5.19
76 77 0.832135 TCCTATCGGATGGTGGCCTC 60.832 60.000 3.32 0.00 33.30 4.70
77 78 1.674057 CTATCGGATGGTGGCCTCC 59.326 63.158 17.33 17.33 0.00 4.30
78 79 1.074850 TATCGGATGGTGGCCTCCA 60.075 57.895 28.00 28.00 42.01 3.86
116 117 1.728490 GCATGATTTCCCTCGGCCAC 61.728 60.000 2.24 0.00 0.00 5.01
127 128 2.432444 CCTCGGCCACTAACATTTTCA 58.568 47.619 2.24 0.00 0.00 2.69
130 131 4.438744 CCTCGGCCACTAACATTTTCAATC 60.439 45.833 2.24 0.00 0.00 2.67
138 139 5.567534 CACTAACATTTTCAATCCGGTTTCG 59.432 40.000 0.00 0.00 0.00 3.46
150 151 2.316119 CGGTTTCGGCTCTCTTTTTG 57.684 50.000 0.00 0.00 0.00 2.44
151 152 1.871039 CGGTTTCGGCTCTCTTTTTGA 59.129 47.619 0.00 0.00 0.00 2.69
164 167 7.546667 GGCTCTCTTTTTGATGAATTGCAAATA 59.453 33.333 1.71 0.00 34.36 1.40
180 183 6.855763 TGCAAATATCTTGAATCTTTGGGT 57.144 33.333 0.00 0.00 0.00 4.51
184 187 8.659491 GCAAATATCTTGAATCTTTGGGTTTTC 58.341 33.333 0.00 0.00 0.00 2.29
185 188 9.709495 CAAATATCTTGAATCTTTGGGTTTTCA 57.291 29.630 0.00 0.00 0.00 2.69
186 189 9.933723 AAATATCTTGAATCTTTGGGTTTTCAG 57.066 29.630 0.00 0.00 30.45 3.02
188 191 4.588528 TCTTGAATCTTTGGGTTTTCAGGG 59.411 41.667 0.00 0.00 30.45 4.45
189 192 3.238597 TGAATCTTTGGGTTTTCAGGGG 58.761 45.455 0.00 0.00 0.00 4.79
231 235 1.227999 TGTGCGTGTGCTAAAGGCTC 61.228 55.000 0.00 0.00 43.34 4.70
232 236 1.070615 TGCGTGTGCTAAAGGCTCA 59.929 52.632 0.00 0.00 43.34 4.26
233 237 0.533978 TGCGTGTGCTAAAGGCTCAA 60.534 50.000 0.00 0.00 44.42 3.02
234 238 0.110192 GCGTGTGCTAAAGGCTCAAC 60.110 55.000 0.00 0.00 44.42 3.18
235 239 0.517316 CGTGTGCTAAAGGCTCAACC 59.483 55.000 0.00 0.00 44.42 3.77
236 240 1.604604 GTGTGCTAAAGGCTCAACCA 58.395 50.000 0.00 0.00 44.42 3.67
237 241 2.162681 GTGTGCTAAAGGCTCAACCAT 58.837 47.619 0.00 0.00 44.42 3.55
238 242 2.558359 GTGTGCTAAAGGCTCAACCATT 59.442 45.455 0.00 0.00 44.42 3.16
239 243 3.005791 GTGTGCTAAAGGCTCAACCATTT 59.994 43.478 0.00 0.00 44.42 2.32
240 244 4.217550 GTGTGCTAAAGGCTCAACCATTTA 59.782 41.667 0.00 0.00 44.42 1.40
241 245 4.830046 TGTGCTAAAGGCTCAACCATTTAA 59.170 37.500 0.00 0.00 43.14 1.52
242 246 5.480073 TGTGCTAAAGGCTCAACCATTTAAT 59.520 36.000 0.00 0.00 43.14 1.40
243 247 6.661377 TGTGCTAAAGGCTCAACCATTTAATA 59.339 34.615 0.00 0.00 43.14 0.98
244 248 7.341769 TGTGCTAAAGGCTCAACCATTTAATAT 59.658 33.333 0.00 0.00 43.14 1.28
245 249 8.197439 GTGCTAAAGGCTCAACCATTTAATATT 58.803 33.333 0.00 0.00 43.14 1.28
246 250 8.413229 TGCTAAAGGCTCAACCATTTAATATTC 58.587 33.333 0.00 0.00 43.14 1.75
247 251 8.633561 GCTAAAGGCTCAACCATTTAATATTCT 58.366 33.333 0.00 0.00 43.14 2.40
250 254 9.657419 AAAGGCTCAACCATTTAATATTCTTTG 57.343 29.630 0.00 0.00 43.14 2.77
251 255 7.267857 AGGCTCAACCATTTAATATTCTTTGC 58.732 34.615 0.00 0.00 43.14 3.68
252 256 7.041107 GGCTCAACCATTTAATATTCTTTGCA 58.959 34.615 0.00 0.00 38.86 4.08
253 257 7.010460 GGCTCAACCATTTAATATTCTTTGCAC 59.990 37.037 0.00 0.00 38.86 4.57
254 258 7.545265 GCTCAACCATTTAATATTCTTTGCACA 59.455 33.333 0.00 0.00 0.00 4.57
255 259 9.590451 CTCAACCATTTAATATTCTTTGCACAT 57.410 29.630 0.00 0.00 0.00 3.21
256 260 9.368674 TCAACCATTTAATATTCTTTGCACATG 57.631 29.630 0.00 0.00 0.00 3.21
257 261 7.775397 ACCATTTAATATTCTTTGCACATGC 57.225 32.000 0.00 0.00 42.50 4.06
269 273 2.282701 GCACATGCAATTCGACCATT 57.717 45.000 0.00 0.00 41.59 3.16
270 274 2.609350 GCACATGCAATTCGACCATTT 58.391 42.857 0.00 0.00 41.59 2.32
271 275 2.599973 GCACATGCAATTCGACCATTTC 59.400 45.455 0.00 0.00 41.59 2.17
272 276 3.181397 CACATGCAATTCGACCATTTCC 58.819 45.455 0.00 0.00 0.00 3.13
273 277 2.824936 ACATGCAATTCGACCATTTCCA 59.175 40.909 0.00 0.00 0.00 3.53
274 278 3.119388 ACATGCAATTCGACCATTTCCAG 60.119 43.478 0.00 0.00 0.00 3.86
275 279 1.818060 TGCAATTCGACCATTTCCAGG 59.182 47.619 0.00 0.00 0.00 4.45
276 280 2.091541 GCAATTCGACCATTTCCAGGA 58.908 47.619 0.00 0.00 0.00 3.86
277 281 2.159379 GCAATTCGACCATTTCCAGGAC 60.159 50.000 0.00 0.00 0.00 3.85
278 282 3.081061 CAATTCGACCATTTCCAGGACA 58.919 45.455 0.00 0.00 0.00 4.02
279 283 2.178912 TTCGACCATTTCCAGGACAC 57.821 50.000 0.00 0.00 0.00 3.67
280 284 1.052617 TCGACCATTTCCAGGACACA 58.947 50.000 0.00 0.00 0.00 3.72
281 285 1.001974 TCGACCATTTCCAGGACACAG 59.998 52.381 0.00 0.00 0.00 3.66
282 286 1.001974 CGACCATTTCCAGGACACAGA 59.998 52.381 0.00 0.00 0.00 3.41
283 287 2.704572 GACCATTTCCAGGACACAGAG 58.295 52.381 0.00 0.00 0.00 3.35
284 288 2.039084 GACCATTTCCAGGACACAGAGT 59.961 50.000 0.00 0.00 0.00 3.24
285 289 2.443255 ACCATTTCCAGGACACAGAGTT 59.557 45.455 0.00 0.00 0.00 3.01
286 290 3.117512 ACCATTTCCAGGACACAGAGTTT 60.118 43.478 0.00 0.00 0.00 2.66
287 291 3.503748 CCATTTCCAGGACACAGAGTTTC 59.496 47.826 0.00 0.00 0.00 2.78
288 292 4.392940 CATTTCCAGGACACAGAGTTTCT 58.607 43.478 0.00 0.00 0.00 2.52
300 304 4.465040 CAGAGTTTCTGCTGTCAAGAAC 57.535 45.455 0.00 0.00 37.72 3.01
301 305 3.873361 CAGAGTTTCTGCTGTCAAGAACA 59.127 43.478 0.00 0.00 37.72 3.18
302 306 4.514441 CAGAGTTTCTGCTGTCAAGAACAT 59.486 41.667 0.00 0.00 37.72 2.71
303 307 5.698089 CAGAGTTTCTGCTGTCAAGAACATA 59.302 40.000 0.00 0.00 37.72 2.29
304 308 6.370994 CAGAGTTTCTGCTGTCAAGAACATAT 59.629 38.462 0.00 0.00 37.72 1.78
305 309 6.370994 AGAGTTTCTGCTGTCAAGAACATATG 59.629 38.462 0.00 0.00 37.23 1.78
306 310 6.233434 AGTTTCTGCTGTCAAGAACATATGA 58.767 36.000 10.38 0.00 37.23 2.15
307 311 6.712095 AGTTTCTGCTGTCAAGAACATATGAA 59.288 34.615 10.38 0.00 37.23 2.57
308 312 6.486253 TTCTGCTGTCAAGAACATATGAAC 57.514 37.500 10.38 2.83 37.23 3.18
309 313 4.937620 TCTGCTGTCAAGAACATATGAACC 59.062 41.667 10.38 0.00 37.23 3.62
310 314 4.009675 TGCTGTCAAGAACATATGAACCC 58.990 43.478 10.38 0.00 37.23 4.11
311 315 3.063997 GCTGTCAAGAACATATGAACCCG 59.936 47.826 10.38 0.00 37.23 5.28
312 316 4.503910 CTGTCAAGAACATATGAACCCGA 58.496 43.478 10.38 0.00 37.23 5.14
313 317 4.900684 TGTCAAGAACATATGAACCCGAA 58.099 39.130 10.38 0.00 31.20 4.30
314 318 5.496556 TGTCAAGAACATATGAACCCGAAT 58.503 37.500 10.38 0.00 31.20 3.34
315 319 5.353956 TGTCAAGAACATATGAACCCGAATG 59.646 40.000 10.38 0.00 31.20 2.67
316 320 5.584649 GTCAAGAACATATGAACCCGAATGA 59.415 40.000 10.38 0.45 0.00 2.57
317 321 6.093495 GTCAAGAACATATGAACCCGAATGAA 59.907 38.462 10.38 0.00 0.00 2.57
318 322 6.093495 TCAAGAACATATGAACCCGAATGAAC 59.907 38.462 10.38 0.00 0.00 3.18
319 323 5.496556 AGAACATATGAACCCGAATGAACA 58.503 37.500 10.38 0.00 0.00 3.18
320 324 5.586243 AGAACATATGAACCCGAATGAACAG 59.414 40.000 10.38 0.00 0.00 3.16
321 325 4.843728 ACATATGAACCCGAATGAACAGT 58.156 39.130 10.38 0.00 0.00 3.55
322 326 5.984725 ACATATGAACCCGAATGAACAGTA 58.015 37.500 10.38 0.00 0.00 2.74
323 327 6.411376 ACATATGAACCCGAATGAACAGTAA 58.589 36.000 10.38 0.00 0.00 2.24
324 328 6.882140 ACATATGAACCCGAATGAACAGTAAA 59.118 34.615 10.38 0.00 0.00 2.01
325 329 7.556275 ACATATGAACCCGAATGAACAGTAAAT 59.444 33.333 10.38 0.00 0.00 1.40
326 330 6.834168 ATGAACCCGAATGAACAGTAAATT 57.166 33.333 0.00 0.00 0.00 1.82
327 331 6.249035 TGAACCCGAATGAACAGTAAATTC 57.751 37.500 0.00 0.00 0.00 2.17
337 341 9.993881 GAATGAACAGTAAATTCGAAAACAATG 57.006 29.630 0.00 2.07 0.00 2.82
338 342 9.743057 AATGAACAGTAAATTCGAAAACAATGA 57.257 25.926 0.00 0.00 0.00 2.57
339 343 9.912634 ATGAACAGTAAATTCGAAAACAATGAT 57.087 25.926 0.00 0.00 0.00 2.45
399 403 3.066342 GCATTGATGGATGTTCAGAGTGG 59.934 47.826 0.00 0.00 0.00 4.00
400 404 4.267536 CATTGATGGATGTTCAGAGTGGT 58.732 43.478 0.00 0.00 0.00 4.16
403 407 3.327464 TGATGGATGTTCAGAGTGGTTGA 59.673 43.478 0.00 0.00 0.00 3.18
409 413 6.206634 TGGATGTTCAGAGTGGTTGAAAATAC 59.793 38.462 0.00 0.00 33.66 1.89
423 427 6.311200 GGTTGAAAATACTGGCATTGCTTTAG 59.689 38.462 8.82 7.46 0.00 1.85
437 441 3.622627 GCTTTAGCATCTTGGAGCATC 57.377 47.619 0.00 0.00 41.59 3.91
474 482 1.314534 TTGCCACGGCTTCCATGATG 61.315 55.000 9.92 0.00 42.51 3.07
486 494 4.151157 GCTTCCATGATGAAACTTTGCAAC 59.849 41.667 0.00 0.00 0.00 4.17
487 495 4.933505 TCCATGATGAAACTTTGCAACA 57.066 36.364 0.00 0.00 0.00 3.33
491 499 5.050634 CCATGATGAAACTTTGCAACAACTG 60.051 40.000 0.00 0.00 0.00 3.16
581 589 5.508200 TTTTGAATTTACTGTTCACGGCT 57.492 34.783 0.00 0.00 35.47 5.52
587 595 2.034048 TACTGTTCACGGCTGGTGCA 62.034 55.000 0.00 0.00 46.56 4.57
588 596 1.968017 CTGTTCACGGCTGGTGCAT 60.968 57.895 0.00 0.00 46.56 3.96
636 644 1.255882 TCGCCATGTCCATTGCTTTT 58.744 45.000 2.40 0.00 0.00 2.27
671 679 9.619316 GTACACATTTGTTATAATTGCACTGAA 57.381 29.630 0.00 0.00 37.15 3.02
672 680 8.519492 ACACATTTGTTATAATTGCACTGAAC 57.481 30.769 0.00 0.00 28.43 3.18
675 683 8.147058 ACATTTGTTATAATTGCACTGAACCAA 58.853 29.630 0.00 0.00 0.00 3.67
678 686 6.908825 TGTTATAATTGCACTGAACCAAGAC 58.091 36.000 0.00 0.00 0.00 3.01
821 833 1.142060 GGGAGAGAGATGAGACGAGGA 59.858 57.143 0.00 0.00 0.00 3.71
860 872 8.411683 ACTCCCTACATACTACGAGTTAAATTG 58.588 37.037 0.00 0.00 0.00 2.32
878 893 1.448893 GCCGTCCACTAATTCGCCA 60.449 57.895 0.00 0.00 0.00 5.69
880 895 1.663695 CCGTCCACTAATTCGCCATT 58.336 50.000 0.00 0.00 0.00 3.16
927 950 0.474184 TCCTATAAAGCCAGCAGCCC 59.526 55.000 0.00 0.00 45.47 5.19
991 1014 2.434134 CGCGTACGTGGAAGCAGAC 61.434 63.158 20.84 0.00 33.53 3.51
1188 1211 4.863925 GCCGTGCTCTCCTCGCTC 62.864 72.222 0.00 0.00 0.00 5.03
1551 1574 4.254709 AGCCAGCAGTTCCACGCA 62.255 61.111 0.00 0.00 0.00 5.24
1566 1589 3.430862 GCATGGGCGCACGAGAAA 61.431 61.111 10.83 0.00 0.00 2.52
1872 1895 5.232202 CAGTTCGTAACATACATCGAGCATT 59.768 40.000 0.00 0.00 36.36 3.56
1877 1900 5.896432 CGTAACATACATCGAGCATTGTTTC 59.104 40.000 10.56 6.37 0.00 2.78
1879 1902 5.725110 ACATACATCGAGCATTGTTTCTC 57.275 39.130 0.00 0.00 0.00 2.87
1885 1908 3.030475 CGAGCATTGTTTCTCGTGATG 57.970 47.619 3.76 0.00 44.95 3.07
1887 1910 1.470098 AGCATTGTTTCTCGTGATGGC 59.530 47.619 0.00 0.00 0.00 4.40
1888 1911 1.470098 GCATTGTTTCTCGTGATGGCT 59.530 47.619 0.00 0.00 0.00 4.75
1889 1912 2.095059 GCATTGTTTCTCGTGATGGCTT 60.095 45.455 0.00 0.00 0.00 4.35
1890 1913 3.495193 CATTGTTTCTCGTGATGGCTTG 58.505 45.455 0.00 0.00 0.00 4.01
1891 1914 2.254546 TGTTTCTCGTGATGGCTTGT 57.745 45.000 0.00 0.00 0.00 3.16
1892 1915 3.394674 TGTTTCTCGTGATGGCTTGTA 57.605 42.857 0.00 0.00 0.00 2.41
1893 1916 3.064207 TGTTTCTCGTGATGGCTTGTAC 58.936 45.455 0.00 0.00 0.00 2.90
1894 1917 3.064207 GTTTCTCGTGATGGCTTGTACA 58.936 45.455 0.00 0.00 0.00 2.90
1895 1918 3.610040 TTCTCGTGATGGCTTGTACAT 57.390 42.857 0.00 0.00 0.00 2.29
1896 1919 4.729227 TTCTCGTGATGGCTTGTACATA 57.271 40.909 0.00 0.00 0.00 2.29
1897 1920 4.041740 TCTCGTGATGGCTTGTACATAC 57.958 45.455 0.00 0.00 0.00 2.39
1898 1921 3.445805 TCTCGTGATGGCTTGTACATACA 59.554 43.478 0.00 0.00 0.00 2.29
1904 1927 6.202762 CGTGATGGCTTGTACATACATACATT 59.797 38.462 0.00 0.00 35.04 2.71
1905 1928 7.355017 GTGATGGCTTGTACATACATACATTG 58.645 38.462 0.00 0.00 35.04 2.82
1943 1966 5.188434 TCAAAAGGTATGCAGAAGGATGAG 58.812 41.667 0.00 0.00 0.00 2.90
1961 1984 3.359033 TGAGCTGGGATTGAAAGGATTG 58.641 45.455 0.00 0.00 0.00 2.67
1968 1991 6.625960 GCTGGGATTGAAAGGATTGAAGTAAC 60.626 42.308 0.00 0.00 0.00 2.50
1969 1992 6.310941 TGGGATTGAAAGGATTGAAGTAACA 58.689 36.000 0.00 0.00 0.00 2.41
1970 1993 6.780031 TGGGATTGAAAGGATTGAAGTAACAA 59.220 34.615 0.00 0.00 0.00 2.83
1971 1994 7.039784 TGGGATTGAAAGGATTGAAGTAACAAG 60.040 37.037 0.00 0.00 33.22 3.16
1972 1995 7.039714 GGGATTGAAAGGATTGAAGTAACAAGT 60.040 37.037 0.00 0.00 33.22 3.16
1973 1996 8.360390 GGATTGAAAGGATTGAAGTAACAAGTT 58.640 33.333 0.00 0.00 33.22 2.66
1997 2020 9.112725 GTTAAGATTATAGTTAGGCGGGAAAAA 57.887 33.333 0.00 0.00 0.00 1.94
1998 2021 9.856162 TTAAGATTATAGTTAGGCGGGAAAAAT 57.144 29.630 0.00 0.00 0.00 1.82
2057 2080 2.095314 TGCAAATCTTGTGGTGTATGCG 60.095 45.455 0.00 0.00 35.40 4.73
2065 2088 2.959516 TGTGGTGTATGCGAAGAGAAG 58.040 47.619 0.00 0.00 0.00 2.85
2075 2098 7.690224 GTGTATGCGAAGAGAAGAGAATTTTTC 59.310 37.037 0.00 0.00 0.00 2.29
2079 2102 7.968246 TGCGAAGAGAAGAGAATTTTTCATAG 58.032 34.615 0.00 0.00 0.00 2.23
2156 2179 0.317269 CACAGCTTTCTTGTGGTGCG 60.317 55.000 0.00 0.00 35.37 5.34
2165 2188 1.266718 TCTTGTGGTGCGAATGCTTTC 59.733 47.619 2.28 2.28 43.34 2.62
2264 2287 5.749588 TGATCAACTCTTTGCAACAACATTG 59.250 36.000 0.00 0.92 32.17 2.82
2268 2291 2.540931 CTCTTTGCAACAACATTGGCAC 59.459 45.455 0.00 0.00 35.74 5.01
2352 2378 4.526262 TGTGTTAATCCATCCACCAAAAGG 59.474 41.667 0.00 0.00 0.00 3.11
2446 2472 8.525290 TGTGAATCACATGTCTAGAGATTCTA 57.475 34.615 24.71 16.36 41.01 2.10
2511 2539 3.887716 AGATGAAGCAACAGAAACAAGCT 59.112 39.130 0.00 0.00 37.08 3.74
2513 2541 3.016031 TGAAGCAACAGAAACAAGCTGA 58.984 40.909 0.00 0.00 36.86 4.26
2531 2559 0.310854 GACACTTCCAAAACTGCGGG 59.689 55.000 0.00 0.00 0.00 6.13
2534 2562 1.530655 CTTCCAAAACTGCGGGGGT 60.531 57.895 0.00 0.00 0.00 4.95
2535 2563 1.805428 CTTCCAAAACTGCGGGGGTG 61.805 60.000 0.00 0.00 0.00 4.61
2537 2565 3.302344 CAAAACTGCGGGGGTGGG 61.302 66.667 0.00 0.00 0.00 4.61
2539 2567 3.507377 AAAACTGCGGGGGTGGGAG 62.507 63.158 0.00 0.00 0.00 4.30
2549 2578 3.775654 GGTGGGAGCCAGAGGACG 61.776 72.222 0.00 0.00 32.34 4.79
2553 2582 2.726351 GGGAGCCAGAGGACGGAAG 61.726 68.421 0.00 0.00 0.00 3.46
2554 2583 2.726351 GGAGCCAGAGGACGGAAGG 61.726 68.421 0.00 0.00 0.00 3.46
2569 2598 2.158842 CGGAAGGCTGAAGATGAATCCT 60.159 50.000 0.00 0.00 0.00 3.24
2594 2623 0.317160 TGGAAGTACTGCTGACCGTG 59.683 55.000 0.00 0.00 0.00 4.94
2599 2628 1.301401 TACTGCTGACCGTGGCAAC 60.301 57.895 0.00 0.00 38.02 4.17
2626 2655 2.799371 GCAAGGAGATGCTGCTGC 59.201 61.111 8.89 8.89 43.06 5.25
2641 2670 6.075762 TGCTGCTGCATACCTTATAAATTG 57.924 37.500 14.93 0.00 45.31 2.32
2642 2671 5.593909 TGCTGCTGCATACCTTATAAATTGT 59.406 36.000 14.93 0.00 45.31 2.71
2643 2672 6.145535 GCTGCTGCATACCTTATAAATTGTC 58.854 40.000 11.11 0.00 39.41 3.18
2644 2673 6.016777 GCTGCTGCATACCTTATAAATTGTCT 60.017 38.462 11.11 0.00 39.41 3.41
2645 2674 7.469181 GCTGCTGCATACCTTATAAATTGTCTT 60.469 37.037 11.11 0.00 39.41 3.01
2646 2675 8.292444 TGCTGCATACCTTATAAATTGTCTTT 57.708 30.769 0.00 0.00 0.00 2.52
2647 2676 8.748412 TGCTGCATACCTTATAAATTGTCTTTT 58.252 29.630 0.00 0.00 0.00 2.27
2648 2677 9.586435 GCTGCATACCTTATAAATTGTCTTTTT 57.414 29.630 0.00 0.00 0.00 1.94
2665 2694 9.567848 TTGTCTTTTTCTTCACACAAATAGAAC 57.432 29.630 0.00 0.00 0.00 3.01
2666 2695 8.735315 TGTCTTTTTCTTCACACAAATAGAACA 58.265 29.630 0.00 0.00 0.00 3.18
2667 2696 9.736023 GTCTTTTTCTTCACACAAATAGAACAT 57.264 29.630 0.00 0.00 0.00 2.71
2668 2697 9.950680 TCTTTTTCTTCACACAAATAGAACATC 57.049 29.630 0.00 0.00 0.00 3.06
2669 2698 9.734620 CTTTTTCTTCACACAAATAGAACATCA 57.265 29.630 0.00 0.00 0.00 3.07
2670 2699 9.515020 TTTTTCTTCACACAAATAGAACATCAC 57.485 29.630 0.00 0.00 0.00 3.06
2671 2700 8.450578 TTTCTTCACACAAATAGAACATCACT 57.549 30.769 0.00 0.00 0.00 3.41
2672 2701 7.658179 TCTTCACACAAATAGAACATCACTC 57.342 36.000 0.00 0.00 0.00 3.51
2673 2702 7.445121 TCTTCACACAAATAGAACATCACTCT 58.555 34.615 0.00 0.00 0.00 3.24
2674 2703 7.600375 TCTTCACACAAATAGAACATCACTCTC 59.400 37.037 0.00 0.00 0.00 3.20
2675 2704 6.166279 TCACACAAATAGAACATCACTCTCC 58.834 40.000 0.00 0.00 0.00 3.71
2676 2705 6.014242 TCACACAAATAGAACATCACTCTCCT 60.014 38.462 0.00 0.00 0.00 3.69
2677 2706 6.091849 CACACAAATAGAACATCACTCTCCTG 59.908 42.308 0.00 0.00 0.00 3.86
2678 2707 6.169094 CACAAATAGAACATCACTCTCCTGT 58.831 40.000 0.00 0.00 0.00 4.00
2679 2708 6.652481 CACAAATAGAACATCACTCTCCTGTT 59.348 38.462 0.00 0.00 35.89 3.16
2680 2709 6.652481 ACAAATAGAACATCACTCTCCTGTTG 59.348 38.462 0.00 0.00 33.46 3.33
2681 2710 6.365970 AATAGAACATCACTCTCCTGTTGT 57.634 37.500 0.00 0.00 33.46 3.32
2682 2711 4.000331 AGAACATCACTCTCCTGTTGTG 58.000 45.455 0.00 0.00 33.46 3.33
2683 2712 2.175878 ACATCACTCTCCTGTTGTGC 57.824 50.000 0.00 0.00 0.00 4.57
2684 2713 1.073964 CATCACTCTCCTGTTGTGCG 58.926 55.000 0.00 0.00 0.00 5.34
2685 2714 0.036952 ATCACTCTCCTGTTGTGCGG 60.037 55.000 0.00 0.00 0.00 5.69
2686 2715 1.069765 CACTCTCCTGTTGTGCGGT 59.930 57.895 0.00 0.00 0.00 5.68
2687 2716 0.946221 CACTCTCCTGTTGTGCGGTC 60.946 60.000 0.00 0.00 0.00 4.79
2688 2717 1.374758 CTCTCCTGTTGTGCGGTCC 60.375 63.158 0.00 0.00 0.00 4.46
2689 2718 2.099652 CTCTCCTGTTGTGCGGTCCA 62.100 60.000 0.00 0.00 0.00 4.02
2690 2719 1.961277 CTCCTGTTGTGCGGTCCAC 60.961 63.158 0.00 0.00 44.90 4.02
2699 2728 1.209128 GTGCGGTCCACATAATCTCG 58.791 55.000 0.00 0.00 44.06 4.04
2700 2729 1.107945 TGCGGTCCACATAATCTCGA 58.892 50.000 0.00 0.00 0.00 4.04
2701 2730 1.067060 TGCGGTCCACATAATCTCGAG 59.933 52.381 5.93 5.93 0.00 4.04
2702 2731 1.337071 GCGGTCCACATAATCTCGAGA 59.663 52.381 19.19 19.19 0.00 4.04
2703 2732 2.859032 GCGGTCCACATAATCTCGAGAC 60.859 54.545 19.30 1.89 0.00 3.36
2704 2733 2.357952 CGGTCCACATAATCTCGAGACA 59.642 50.000 19.30 9.29 0.00 3.41
2705 2734 3.181490 CGGTCCACATAATCTCGAGACAA 60.181 47.826 19.30 9.27 0.00 3.18
2706 2735 4.676986 CGGTCCACATAATCTCGAGACAAA 60.677 45.833 19.30 6.46 0.00 2.83
2707 2736 5.360591 GGTCCACATAATCTCGAGACAAAT 58.639 41.667 19.30 8.69 0.00 2.32
2708 2737 5.817816 GGTCCACATAATCTCGAGACAAATT 59.182 40.000 19.30 10.78 0.00 1.82
2709 2738 6.984474 GGTCCACATAATCTCGAGACAAATTA 59.016 38.462 19.30 12.76 0.00 1.40
2710 2739 7.042658 GGTCCACATAATCTCGAGACAAATTAC 60.043 40.741 19.30 9.34 0.00 1.89
2711 2740 7.707035 GTCCACATAATCTCGAGACAAATTACT 59.293 37.037 19.30 0.00 0.00 2.24
2712 2741 8.258007 TCCACATAATCTCGAGACAAATTACTT 58.742 33.333 19.30 8.07 0.00 2.24
2713 2742 8.543774 CCACATAATCTCGAGACAAATTACTTC 58.456 37.037 19.30 0.00 0.00 3.01
2714 2743 9.087424 CACATAATCTCGAGACAAATTACTTCA 57.913 33.333 19.30 0.00 0.00 3.02
2715 2744 9.307121 ACATAATCTCGAGACAAATTACTTCAG 57.693 33.333 19.30 4.54 0.00 3.02
2716 2745 9.521503 CATAATCTCGAGACAAATTACTTCAGA 57.478 33.333 19.30 0.00 0.00 3.27
2717 2746 7.820044 AATCTCGAGACAAATTACTTCAGAC 57.180 36.000 19.30 0.00 0.00 3.51
2718 2747 6.327279 TCTCGAGACAAATTACTTCAGACA 57.673 37.500 12.08 0.00 0.00 3.41
2719 2748 6.382608 TCTCGAGACAAATTACTTCAGACAG 58.617 40.000 12.08 0.00 0.00 3.51
2720 2749 4.923871 TCGAGACAAATTACTTCAGACAGC 59.076 41.667 0.00 0.00 0.00 4.40
2721 2750 4.686091 CGAGACAAATTACTTCAGACAGCA 59.314 41.667 0.00 0.00 0.00 4.41
2722 2751 5.164012 CGAGACAAATTACTTCAGACAGCAG 60.164 44.000 0.00 0.00 0.00 4.24
2723 2752 4.453819 AGACAAATTACTTCAGACAGCAGC 59.546 41.667 0.00 0.00 0.00 5.25
2724 2753 4.136796 ACAAATTACTTCAGACAGCAGCA 58.863 39.130 0.00 0.00 0.00 4.41
2725 2754 4.580167 ACAAATTACTTCAGACAGCAGCAA 59.420 37.500 0.00 0.00 0.00 3.91
2726 2755 5.152097 CAAATTACTTCAGACAGCAGCAAG 58.848 41.667 0.00 0.00 0.00 4.01
2727 2756 3.751479 TTACTTCAGACAGCAGCAAGA 57.249 42.857 0.00 0.00 0.00 3.02
2728 2757 2.627515 ACTTCAGACAGCAGCAAGAA 57.372 45.000 0.00 0.00 0.00 2.52
2729 2758 2.923121 ACTTCAGACAGCAGCAAGAAA 58.077 42.857 0.00 0.00 0.00 2.52
2730 2759 3.484407 ACTTCAGACAGCAGCAAGAAAT 58.516 40.909 0.00 0.00 0.00 2.17
2731 2760 4.645535 ACTTCAGACAGCAGCAAGAAATA 58.354 39.130 0.00 0.00 0.00 1.40
2732 2761 5.251764 ACTTCAGACAGCAGCAAGAAATAT 58.748 37.500 0.00 0.00 0.00 1.28
2733 2762 5.709164 ACTTCAGACAGCAGCAAGAAATATT 59.291 36.000 0.00 0.00 0.00 1.28
2734 2763 5.556355 TCAGACAGCAGCAAGAAATATTG 57.444 39.130 0.00 0.00 0.00 1.90
2735 2764 5.247862 TCAGACAGCAGCAAGAAATATTGA 58.752 37.500 0.00 0.00 31.55 2.57
2736 2765 5.122869 TCAGACAGCAGCAAGAAATATTGAC 59.877 40.000 0.00 0.00 31.55 3.18
2737 2766 5.005740 AGACAGCAGCAAGAAATATTGACA 58.994 37.500 0.00 0.00 31.55 3.58
2738 2767 5.474532 AGACAGCAGCAAGAAATATTGACAA 59.525 36.000 0.00 0.00 31.55 3.18
2739 2768 5.706916 ACAGCAGCAAGAAATATTGACAAG 58.293 37.500 0.00 0.00 31.55 3.16
2740 2769 4.561606 CAGCAGCAAGAAATATTGACAAGC 59.438 41.667 0.00 0.00 31.55 4.01
2741 2770 4.219070 AGCAGCAAGAAATATTGACAAGCA 59.781 37.500 0.00 0.00 31.55 3.91
2742 2771 4.925054 GCAGCAAGAAATATTGACAAGCAA 59.075 37.500 0.00 0.00 41.53 3.91
2743 2772 5.164022 GCAGCAAGAAATATTGACAAGCAAC 60.164 40.000 0.00 0.00 39.78 4.17
2744 2773 6.154445 CAGCAAGAAATATTGACAAGCAACT 58.846 36.000 0.00 0.00 39.78 3.16
2745 2774 7.307694 CAGCAAGAAATATTGACAAGCAACTA 58.692 34.615 0.00 0.00 39.78 2.24
2746 2775 7.484007 CAGCAAGAAATATTGACAAGCAACTAG 59.516 37.037 0.00 0.00 39.78 2.57
2747 2776 7.391554 AGCAAGAAATATTGACAAGCAACTAGA 59.608 33.333 0.00 0.00 39.78 2.43
2748 2777 8.186821 GCAAGAAATATTGACAAGCAACTAGAT 58.813 33.333 0.00 0.00 39.78 1.98
2749 2778 9.713740 CAAGAAATATTGACAAGCAACTAGATC 57.286 33.333 0.00 0.00 39.78 2.75
2750 2779 9.453572 AAGAAATATTGACAAGCAACTAGATCA 57.546 29.630 0.00 0.00 39.78 2.92
2751 2780 9.624373 AGAAATATTGACAAGCAACTAGATCAT 57.376 29.630 0.00 0.00 39.78 2.45
2755 2784 6.500684 TTGACAAGCAACTAGATCATTTCC 57.499 37.500 0.00 0.00 0.00 3.13
2756 2785 5.809001 TGACAAGCAACTAGATCATTTCCT 58.191 37.500 0.00 0.00 0.00 3.36
2757 2786 5.645067 TGACAAGCAACTAGATCATTTCCTG 59.355 40.000 0.00 0.00 0.00 3.86
2758 2787 5.564550 ACAAGCAACTAGATCATTTCCTGT 58.435 37.500 0.00 0.00 0.00 4.00
2759 2788 6.711277 ACAAGCAACTAGATCATTTCCTGTA 58.289 36.000 0.00 0.00 0.00 2.74
2760 2789 6.820656 ACAAGCAACTAGATCATTTCCTGTAG 59.179 38.462 0.00 0.00 0.00 2.74
2761 2790 6.798427 AGCAACTAGATCATTTCCTGTAGA 57.202 37.500 0.00 0.00 0.00 2.59
2762 2791 6.578023 AGCAACTAGATCATTTCCTGTAGAC 58.422 40.000 0.00 0.00 0.00 2.59
2763 2792 6.382570 AGCAACTAGATCATTTCCTGTAGACT 59.617 38.462 0.00 0.00 0.00 3.24
2764 2793 6.478344 GCAACTAGATCATTTCCTGTAGACTG 59.522 42.308 0.00 0.00 0.00 3.51
2765 2794 6.155475 ACTAGATCATTTCCTGTAGACTGC 57.845 41.667 0.00 0.00 0.00 4.40
2766 2795 5.658634 ACTAGATCATTTCCTGTAGACTGCA 59.341 40.000 0.00 0.00 0.00 4.41
2767 2796 5.021033 AGATCATTTCCTGTAGACTGCAG 57.979 43.478 13.48 13.48 0.00 4.41
2768 2797 4.713814 AGATCATTTCCTGTAGACTGCAGA 59.286 41.667 23.35 2.67 36.12 4.26
2769 2798 5.366186 AGATCATTTCCTGTAGACTGCAGAT 59.634 40.000 23.35 11.17 36.12 2.90
2770 2799 5.016051 TCATTTCCTGTAGACTGCAGATC 57.984 43.478 23.35 14.11 36.12 2.75
2771 2800 3.895232 TTTCCTGTAGACTGCAGATCC 57.105 47.619 23.35 9.04 36.12 3.36
2772 2801 2.836636 TCCTGTAGACTGCAGATCCT 57.163 50.000 23.35 15.92 36.12 3.24
2773 2802 3.107402 TCCTGTAGACTGCAGATCCTT 57.893 47.619 23.35 0.00 36.12 3.36
2774 2803 4.251103 TCCTGTAGACTGCAGATCCTTA 57.749 45.455 23.35 2.14 36.12 2.69
2775 2804 4.809193 TCCTGTAGACTGCAGATCCTTAT 58.191 43.478 23.35 0.00 36.12 1.73
2776 2805 4.586421 TCCTGTAGACTGCAGATCCTTATG 59.414 45.833 23.35 2.94 36.12 1.90
2777 2806 4.343526 CCTGTAGACTGCAGATCCTTATGT 59.656 45.833 23.35 0.00 36.12 2.29
2778 2807 5.163364 CCTGTAGACTGCAGATCCTTATGTT 60.163 44.000 23.35 0.00 36.12 2.71
2779 2808 5.664457 TGTAGACTGCAGATCCTTATGTTG 58.336 41.667 23.35 0.00 0.00 3.33
2780 2809 3.539604 AGACTGCAGATCCTTATGTTGC 58.460 45.455 23.35 0.00 35.42 4.17
2781 2810 3.199508 AGACTGCAGATCCTTATGTTGCT 59.800 43.478 23.35 0.00 35.85 3.91
2782 2811 3.276857 ACTGCAGATCCTTATGTTGCTG 58.723 45.455 23.35 6.30 38.93 4.41
2783 2812 3.276857 CTGCAGATCCTTATGTTGCTGT 58.723 45.455 8.42 0.00 35.85 4.40
2784 2813 4.080919 ACTGCAGATCCTTATGTTGCTGTA 60.081 41.667 23.35 0.00 42.50 2.74
2785 2814 4.842574 TGCAGATCCTTATGTTGCTGTAA 58.157 39.130 3.00 0.00 35.85 2.41
2786 2815 5.439721 TGCAGATCCTTATGTTGCTGTAAT 58.560 37.500 3.00 0.00 35.85 1.89
2787 2816 5.528690 TGCAGATCCTTATGTTGCTGTAATC 59.471 40.000 3.00 0.00 35.85 1.75
2788 2817 5.762218 GCAGATCCTTATGTTGCTGTAATCT 59.238 40.000 0.00 0.00 0.00 2.40
2789 2818 6.931281 GCAGATCCTTATGTTGCTGTAATCTA 59.069 38.462 0.00 0.00 0.00 1.98
2790 2819 7.442364 GCAGATCCTTATGTTGCTGTAATCTAA 59.558 37.037 0.00 0.00 0.00 2.10
2791 2820 8.768955 CAGATCCTTATGTTGCTGTAATCTAAC 58.231 37.037 0.00 0.00 0.00 2.34
2792 2821 7.653713 AGATCCTTATGTTGCTGTAATCTAACG 59.346 37.037 0.00 0.00 0.00 3.18
2793 2822 6.869695 TCCTTATGTTGCTGTAATCTAACGA 58.130 36.000 0.00 0.00 0.00 3.85
2794 2823 7.497595 TCCTTATGTTGCTGTAATCTAACGAT 58.502 34.615 0.00 0.00 0.00 3.73
2795 2824 8.635328 TCCTTATGTTGCTGTAATCTAACGATA 58.365 33.333 0.00 0.00 0.00 2.92
2796 2825 8.916654 CCTTATGTTGCTGTAATCTAACGATAG 58.083 37.037 0.00 0.00 46.19 2.08
2797 2826 9.678941 CTTATGTTGCTGTAATCTAACGATAGA 57.321 33.333 4.76 4.76 42.23 1.98
2799 2828 7.930513 TGTTGCTGTAATCTAACGATAGATG 57.069 36.000 15.11 4.99 46.01 2.90
2800 2829 6.923508 TGTTGCTGTAATCTAACGATAGATGG 59.076 38.462 15.11 7.96 46.01 3.51
2801 2830 6.650427 TGCTGTAATCTAACGATAGATGGT 57.350 37.500 15.11 4.38 46.01 3.55
2802 2831 6.447162 TGCTGTAATCTAACGATAGATGGTG 58.553 40.000 15.11 7.98 46.01 4.17
2803 2832 5.864474 GCTGTAATCTAACGATAGATGGTGG 59.136 44.000 15.11 8.25 46.01 4.61
2804 2833 5.779922 TGTAATCTAACGATAGATGGTGGC 58.220 41.667 15.11 5.88 46.01 5.01
2805 2834 4.955811 AATCTAACGATAGATGGTGGCA 57.044 40.909 15.11 0.00 46.01 4.92
2806 2835 5.489792 AATCTAACGATAGATGGTGGCAT 57.510 39.130 15.11 0.00 46.01 4.40
2807 2836 4.955811 TCTAACGATAGATGGTGGCATT 57.044 40.909 0.00 0.00 41.38 3.56
2808 2837 4.883083 TCTAACGATAGATGGTGGCATTC 58.117 43.478 0.00 0.00 41.38 2.67
2809 2838 3.845781 AACGATAGATGGTGGCATTCT 57.154 42.857 0.00 0.00 41.38 2.40
2810 2839 3.393089 ACGATAGATGGTGGCATTCTC 57.607 47.619 0.00 0.00 41.38 2.87
2811 2840 2.037772 ACGATAGATGGTGGCATTCTCC 59.962 50.000 0.00 0.00 41.38 3.71
2812 2841 2.037641 CGATAGATGGTGGCATTCTCCA 59.962 50.000 0.00 0.00 42.46 3.86
2813 2842 3.672808 GATAGATGGTGGCATTCTCCAG 58.327 50.000 0.91 0.00 41.68 3.86
2814 2843 1.293062 AGATGGTGGCATTCTCCAGT 58.707 50.000 0.91 0.00 41.68 4.00
2815 2844 1.064906 AGATGGTGGCATTCTCCAGTG 60.065 52.381 0.91 0.00 41.68 3.66
2816 2845 0.994247 ATGGTGGCATTCTCCAGTGA 59.006 50.000 0.91 0.00 41.68 3.41
2817 2846 0.770499 TGGTGGCATTCTCCAGTGAA 59.230 50.000 0.00 0.00 36.67 3.18
2818 2847 1.168714 GGTGGCATTCTCCAGTGAAC 58.831 55.000 0.00 0.00 36.67 3.18
2819 2848 0.798776 GTGGCATTCTCCAGTGAACG 59.201 55.000 0.00 0.00 36.67 3.95
2820 2849 0.955428 TGGCATTCTCCAGTGAACGC 60.955 55.000 0.00 0.00 34.83 4.84
2821 2850 0.955428 GGCATTCTCCAGTGAACGCA 60.955 55.000 3.40 0.00 36.94 5.24
2822 2851 1.089920 GCATTCTCCAGTGAACGCAT 58.910 50.000 0.00 0.00 35.54 4.73
2823 2852 1.063174 GCATTCTCCAGTGAACGCATC 59.937 52.381 0.00 0.00 35.54 3.91
2824 2853 2.625737 CATTCTCCAGTGAACGCATCT 58.374 47.619 0.00 0.00 0.00 2.90
2825 2854 2.370281 TTCTCCAGTGAACGCATCTC 57.630 50.000 0.00 0.00 0.00 2.75
2826 2855 0.171231 TCTCCAGTGAACGCATCTCG 59.829 55.000 0.00 0.00 45.38 4.04
2835 2864 4.889427 CGCATCTCGTGGAAGTCA 57.111 55.556 0.00 0.00 0.00 3.41
2836 2865 3.352447 CGCATCTCGTGGAAGTCAT 57.648 52.632 0.00 0.00 0.00 3.06
2837 2866 2.492019 CGCATCTCGTGGAAGTCATA 57.508 50.000 0.00 0.00 0.00 2.15
2838 2867 2.120232 CGCATCTCGTGGAAGTCATAC 58.880 52.381 0.00 0.00 0.00 2.39
2839 2868 2.479560 CGCATCTCGTGGAAGTCATACA 60.480 50.000 0.00 0.00 0.00 2.29
2840 2869 3.521560 GCATCTCGTGGAAGTCATACAA 58.478 45.455 0.00 0.00 0.00 2.41
2841 2870 3.553511 GCATCTCGTGGAAGTCATACAAG 59.446 47.826 0.00 0.00 0.00 3.16
2842 2871 4.748892 CATCTCGTGGAAGTCATACAAGT 58.251 43.478 0.00 0.00 0.00 3.16
2843 2872 4.436242 TCTCGTGGAAGTCATACAAGTC 57.564 45.455 0.00 0.00 0.00 3.01
2844 2873 3.824443 TCTCGTGGAAGTCATACAAGTCA 59.176 43.478 0.00 0.00 0.00 3.41
2845 2874 4.462834 TCTCGTGGAAGTCATACAAGTCAT 59.537 41.667 0.00 0.00 0.00 3.06
2846 2875 4.744570 TCGTGGAAGTCATACAAGTCATC 58.255 43.478 0.00 0.00 0.00 2.92
2847 2876 3.865745 CGTGGAAGTCATACAAGTCATCC 59.134 47.826 0.00 0.00 0.00 3.51
2848 2877 4.620567 CGTGGAAGTCATACAAGTCATCCA 60.621 45.833 0.00 0.00 33.54 3.41
2849 2878 5.245531 GTGGAAGTCATACAAGTCATCCAA 58.754 41.667 0.00 0.00 37.45 3.53
2850 2879 5.352569 GTGGAAGTCATACAAGTCATCCAAG 59.647 44.000 0.00 0.00 37.45 3.61
2851 2880 4.333926 GGAAGTCATACAAGTCATCCAAGC 59.666 45.833 0.00 0.00 0.00 4.01
2852 2881 4.558226 AGTCATACAAGTCATCCAAGCA 57.442 40.909 0.00 0.00 0.00 3.91
2853 2882 4.511527 AGTCATACAAGTCATCCAAGCAG 58.488 43.478 0.00 0.00 0.00 4.24
2854 2883 3.064545 GTCATACAAGTCATCCAAGCAGC 59.935 47.826 0.00 0.00 0.00 5.25
2855 2884 2.857186 TACAAGTCATCCAAGCAGCA 57.143 45.000 0.00 0.00 0.00 4.41
2856 2885 1.531423 ACAAGTCATCCAAGCAGCAG 58.469 50.000 0.00 0.00 0.00 4.24
2857 2886 0.809385 CAAGTCATCCAAGCAGCAGG 59.191 55.000 0.00 0.00 0.00 4.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.391597 ATCGAACCCACTTGTCGTGT 59.608 50.000 0.00 0.00 42.20 4.49
1 2 1.068474 GATCGAACCCACTTGTCGTG 58.932 55.000 0.00 0.00 43.41 4.35
2 3 0.966920 AGATCGAACCCACTTGTCGT 59.033 50.000 0.00 0.00 0.00 4.34
3 4 2.798680 CTAGATCGAACCCACTTGTCG 58.201 52.381 0.00 0.00 0.00 4.35
4 5 2.166664 AGCTAGATCGAACCCACTTGTC 59.833 50.000 0.00 0.00 0.00 3.18
5 6 2.180276 AGCTAGATCGAACCCACTTGT 58.820 47.619 0.00 0.00 0.00 3.16
6 7 2.969628 AGCTAGATCGAACCCACTTG 57.030 50.000 0.00 0.00 0.00 3.16
7 8 2.362717 GCTAGCTAGATCGAACCCACTT 59.637 50.000 25.15 0.00 0.00 3.16
8 9 1.957877 GCTAGCTAGATCGAACCCACT 59.042 52.381 25.15 0.00 0.00 4.00
9 10 1.681793 TGCTAGCTAGATCGAACCCAC 59.318 52.381 25.15 2.96 0.00 4.61
10 11 2.067365 TGCTAGCTAGATCGAACCCA 57.933 50.000 25.15 7.12 0.00 4.51
11 12 2.297597 ACATGCTAGCTAGATCGAACCC 59.702 50.000 25.15 4.42 0.00 4.11
12 13 3.004839 TGACATGCTAGCTAGATCGAACC 59.995 47.826 25.15 5.17 0.00 3.62
13 14 4.230314 TGACATGCTAGCTAGATCGAAC 57.770 45.455 25.15 10.41 0.00 3.95
14 15 4.321527 CCATGACATGCTAGCTAGATCGAA 60.322 45.833 25.15 5.03 0.00 3.71
15 16 3.192212 CCATGACATGCTAGCTAGATCGA 59.808 47.826 25.15 4.88 0.00 3.59
16 17 3.056962 ACCATGACATGCTAGCTAGATCG 60.057 47.826 25.15 12.82 0.00 3.69
17 18 4.244066 CACCATGACATGCTAGCTAGATC 58.756 47.826 25.15 14.74 0.00 2.75
18 19 3.007723 CCACCATGACATGCTAGCTAGAT 59.992 47.826 25.15 11.76 0.00 1.98
19 20 2.366590 CCACCATGACATGCTAGCTAGA 59.633 50.000 25.15 9.92 0.00 2.43
20 21 2.103771 ACCACCATGACATGCTAGCTAG 59.896 50.000 16.84 16.84 0.00 3.42
21 22 2.118679 ACCACCATGACATGCTAGCTA 58.881 47.619 17.23 2.58 0.00 3.32
22 23 0.914644 ACCACCATGACATGCTAGCT 59.085 50.000 17.23 0.00 0.00 3.32
23 24 1.019673 CACCACCATGACATGCTAGC 58.980 55.000 8.10 8.10 0.00 3.42
24 25 2.283298 GACACCACCATGACATGCTAG 58.717 52.381 10.10 2.95 0.00 3.42
25 26 1.065491 GGACACCACCATGACATGCTA 60.065 52.381 10.10 0.00 0.00 3.49
26 27 0.322816 GGACACCACCATGACATGCT 60.323 55.000 10.10 0.00 0.00 3.79
27 28 1.315257 GGGACACCACCATGACATGC 61.315 60.000 10.10 0.00 36.50 4.06
28 29 1.026182 CGGGACACCACCATGACATG 61.026 60.000 8.56 8.56 36.13 3.21
29 30 1.299648 CGGGACACCACCATGACAT 59.700 57.895 0.00 0.00 36.13 3.06
30 31 2.144078 ACGGGACACCACCATGACA 61.144 57.895 0.00 0.00 36.13 3.58
31 32 1.671054 CACGGGACACCACCATGAC 60.671 63.158 0.00 0.00 36.13 3.06
32 33 2.144078 ACACGGGACACCACCATGA 61.144 57.895 0.00 0.00 36.13 3.07
33 34 1.965930 CACACGGGACACCACCATG 60.966 63.158 0.00 0.00 36.13 3.66
34 35 2.429930 CACACGGGACACCACCAT 59.570 61.111 0.00 0.00 36.13 3.55
35 36 4.555709 GCACACGGGACACCACCA 62.556 66.667 0.00 0.00 36.13 4.17
46 47 2.279517 GATAGGAGGCCGCACACG 60.280 66.667 9.31 0.00 39.67 4.49
47 48 2.279517 CGATAGGAGGCCGCACAC 60.280 66.667 9.31 0.00 0.00 3.82
59 60 1.121407 TGGAGGCCACCATCCGATAG 61.121 60.000 19.11 0.00 38.52 2.08
60 61 0.473694 ATGGAGGCCACCATCCGATA 60.474 55.000 27.34 1.98 46.24 2.92
61 62 1.771746 ATGGAGGCCACCATCCGAT 60.772 57.895 27.34 7.69 46.24 4.18
62 63 2.366837 ATGGAGGCCACCATCCGA 60.367 61.111 27.34 3.57 46.24 4.55
67 68 1.379916 CAAGTGATGGAGGCCACCA 59.620 57.895 25.10 25.10 44.41 4.17
68 69 0.251341 AACAAGTGATGGAGGCCACC 60.251 55.000 13.09 13.09 35.80 4.61
69 70 1.270550 CAAACAAGTGATGGAGGCCAC 59.729 52.381 5.01 0.00 35.80 5.01
70 71 1.619654 CAAACAAGTGATGGAGGCCA 58.380 50.000 5.01 0.00 38.19 5.36
71 72 0.890683 CCAAACAAGTGATGGAGGCC 59.109 55.000 0.00 0.00 36.27 5.19
72 73 1.620822 ACCAAACAAGTGATGGAGGC 58.379 50.000 11.05 0.00 37.66 4.70
73 74 4.620982 GAAAACCAAACAAGTGATGGAGG 58.379 43.478 11.05 0.00 37.66 4.30
74 75 4.290155 CGAAAACCAAACAAGTGATGGAG 58.710 43.478 11.05 0.00 37.66 3.86
75 76 3.067461 CCGAAAACCAAACAAGTGATGGA 59.933 43.478 11.05 0.00 37.66 3.41
76 77 3.380142 CCGAAAACCAAACAAGTGATGG 58.620 45.455 4.32 4.32 40.16 3.51
77 78 2.794350 GCCGAAAACCAAACAAGTGATG 59.206 45.455 0.00 0.00 0.00 3.07
78 79 2.428890 TGCCGAAAACCAAACAAGTGAT 59.571 40.909 0.00 0.00 0.00 3.06
79 80 1.819288 TGCCGAAAACCAAACAAGTGA 59.181 42.857 0.00 0.00 0.00 3.41
80 81 2.285827 TGCCGAAAACCAAACAAGTG 57.714 45.000 0.00 0.00 0.00 3.16
81 82 2.428890 TCATGCCGAAAACCAAACAAGT 59.571 40.909 0.00 0.00 0.00 3.16
127 128 0.613777 AAGAGAGCCGAAACCGGATT 59.386 50.000 9.46 0.57 46.90 3.01
138 139 4.813027 TGCAATTCATCAAAAAGAGAGCC 58.187 39.130 0.00 0.00 0.00 4.70
139 140 6.774354 TTTGCAATTCATCAAAAAGAGAGC 57.226 33.333 0.00 0.00 30.19 4.09
164 167 5.246883 CCCTGAAAACCCAAAGATTCAAGAT 59.753 40.000 0.00 0.00 31.94 2.40
210 214 0.240945 GCCTTTAGCACACGCACAAT 59.759 50.000 0.00 0.00 42.97 2.71
231 235 8.117988 GCATGTGCAAAGAATATTAAATGGTTG 58.882 33.333 0.00 0.00 41.59 3.77
232 236 8.200364 GCATGTGCAAAGAATATTAAATGGTT 57.800 30.769 0.00 0.00 41.59 3.67
233 237 7.775397 GCATGTGCAAAGAATATTAAATGGT 57.225 32.000 0.00 0.00 41.59 3.55
250 254 2.282701 AATGGTCGAATTGCATGTGC 57.717 45.000 0.00 0.00 42.50 4.57
251 255 3.181397 GGAAATGGTCGAATTGCATGTG 58.819 45.455 0.00 0.00 0.00 3.21
252 256 2.824936 TGGAAATGGTCGAATTGCATGT 59.175 40.909 0.00 0.00 0.00 3.21
253 257 3.441163 CTGGAAATGGTCGAATTGCATG 58.559 45.455 0.00 0.00 0.00 4.06
254 258 2.428171 CCTGGAAATGGTCGAATTGCAT 59.572 45.455 0.00 0.00 0.00 3.96
255 259 1.818060 CCTGGAAATGGTCGAATTGCA 59.182 47.619 0.00 0.00 0.00 4.08
256 260 2.091541 TCCTGGAAATGGTCGAATTGC 58.908 47.619 0.00 0.00 0.00 3.56
257 261 3.081061 TGTCCTGGAAATGGTCGAATTG 58.919 45.455 0.00 0.00 0.00 2.32
258 262 3.081804 GTGTCCTGGAAATGGTCGAATT 58.918 45.455 0.00 0.00 0.00 2.17
259 263 2.039746 TGTGTCCTGGAAATGGTCGAAT 59.960 45.455 0.00 0.00 0.00 3.34
260 264 1.418264 TGTGTCCTGGAAATGGTCGAA 59.582 47.619 0.00 0.00 0.00 3.71
261 265 1.001974 CTGTGTCCTGGAAATGGTCGA 59.998 52.381 0.00 0.00 0.00 4.20
262 266 1.001974 TCTGTGTCCTGGAAATGGTCG 59.998 52.381 0.00 0.00 0.00 4.79
263 267 2.039084 ACTCTGTGTCCTGGAAATGGTC 59.961 50.000 0.00 0.00 0.00 4.02
264 268 2.057922 ACTCTGTGTCCTGGAAATGGT 58.942 47.619 0.00 0.00 0.00 3.55
265 269 2.867109 ACTCTGTGTCCTGGAAATGG 57.133 50.000 0.00 0.00 0.00 3.16
266 270 4.214971 CAGAAACTCTGTGTCCTGGAAATG 59.785 45.833 0.00 0.00 39.58 2.32
267 271 4.392940 CAGAAACTCTGTGTCCTGGAAAT 58.607 43.478 0.00 0.00 39.58 2.17
268 272 3.808728 CAGAAACTCTGTGTCCTGGAAA 58.191 45.455 0.00 0.00 39.58 3.13
269 273 2.485479 GCAGAAACTCTGTGTCCTGGAA 60.485 50.000 0.00 0.00 45.94 3.53
270 274 1.070758 GCAGAAACTCTGTGTCCTGGA 59.929 52.381 5.61 0.00 45.94 3.86
271 275 1.071385 AGCAGAAACTCTGTGTCCTGG 59.929 52.381 5.61 0.00 45.94 4.45
272 276 2.141517 CAGCAGAAACTCTGTGTCCTG 58.858 52.381 5.61 1.17 45.94 3.86
273 277 1.765314 ACAGCAGAAACTCTGTGTCCT 59.235 47.619 5.61 0.00 45.94 3.85
274 278 2.139118 GACAGCAGAAACTCTGTGTCC 58.861 52.381 18.53 8.79 45.94 4.02
275 279 2.826428 TGACAGCAGAAACTCTGTGTC 58.174 47.619 20.51 20.51 45.94 3.67
276 280 2.988010 TGACAGCAGAAACTCTGTGT 57.012 45.000 5.61 8.12 45.94 3.72
277 281 3.461061 TCTTGACAGCAGAAACTCTGTG 58.539 45.455 5.61 5.45 45.94 3.66
278 282 3.827008 TCTTGACAGCAGAAACTCTGT 57.173 42.857 5.61 0.00 45.94 3.41
279 283 3.873361 TGTTCTTGACAGCAGAAACTCTG 59.127 43.478 0.00 0.00 39.33 3.35
280 284 4.142609 TGTTCTTGACAGCAGAAACTCT 57.857 40.909 0.00 0.00 33.40 3.24
281 285 6.369890 TCATATGTTCTTGACAGCAGAAACTC 59.630 38.462 1.90 0.00 42.62 3.01
282 286 6.233434 TCATATGTTCTTGACAGCAGAAACT 58.767 36.000 1.90 0.00 42.62 2.66
283 287 6.486253 TCATATGTTCTTGACAGCAGAAAC 57.514 37.500 1.90 0.00 42.62 2.78
284 288 6.072508 GGTTCATATGTTCTTGACAGCAGAAA 60.073 38.462 1.90 0.00 42.62 2.52
285 289 5.412594 GGTTCATATGTTCTTGACAGCAGAA 59.587 40.000 1.90 0.00 42.62 3.02
286 290 4.937620 GGTTCATATGTTCTTGACAGCAGA 59.062 41.667 1.90 0.00 42.62 4.26
287 291 4.095483 GGGTTCATATGTTCTTGACAGCAG 59.905 45.833 1.90 0.00 42.62 4.24
288 292 4.009675 GGGTTCATATGTTCTTGACAGCA 58.990 43.478 1.90 0.00 42.62 4.41
289 293 3.063997 CGGGTTCATATGTTCTTGACAGC 59.936 47.826 1.90 0.00 42.62 4.40
290 294 4.503910 TCGGGTTCATATGTTCTTGACAG 58.496 43.478 1.90 0.00 42.62 3.51
291 295 4.545208 TCGGGTTCATATGTTCTTGACA 57.455 40.909 1.90 0.00 43.71 3.58
292 296 5.584649 TCATTCGGGTTCATATGTTCTTGAC 59.415 40.000 1.90 0.00 0.00 3.18
293 297 5.739959 TCATTCGGGTTCATATGTTCTTGA 58.260 37.500 1.90 0.00 0.00 3.02
294 298 6.128035 TGTTCATTCGGGTTCATATGTTCTTG 60.128 38.462 1.90 0.00 0.00 3.02
295 299 5.943416 TGTTCATTCGGGTTCATATGTTCTT 59.057 36.000 1.90 0.00 0.00 2.52
296 300 5.496556 TGTTCATTCGGGTTCATATGTTCT 58.503 37.500 1.90 0.00 0.00 3.01
297 301 5.354234 ACTGTTCATTCGGGTTCATATGTTC 59.646 40.000 1.90 0.00 0.00 3.18
298 302 5.253330 ACTGTTCATTCGGGTTCATATGTT 58.747 37.500 1.90 0.00 0.00 2.71
299 303 4.843728 ACTGTTCATTCGGGTTCATATGT 58.156 39.130 1.90 0.00 0.00 2.29
300 304 6.918892 TTACTGTTCATTCGGGTTCATATG 57.081 37.500 0.00 0.00 0.00 1.78
301 305 8.519799 AATTTACTGTTCATTCGGGTTCATAT 57.480 30.769 0.00 0.00 0.00 1.78
302 306 7.201574 CGAATTTACTGTTCATTCGGGTTCATA 60.202 37.037 18.85 0.00 43.56 2.15
303 307 6.403200 CGAATTTACTGTTCATTCGGGTTCAT 60.403 38.462 18.85 0.00 43.56 2.57
304 308 5.106869 CGAATTTACTGTTCATTCGGGTTCA 60.107 40.000 18.85 0.00 43.56 3.18
305 309 5.121142 TCGAATTTACTGTTCATTCGGGTTC 59.879 40.000 22.95 3.24 46.03 3.62
306 310 4.998672 TCGAATTTACTGTTCATTCGGGTT 59.001 37.500 22.95 0.00 46.03 4.11
307 311 4.571919 TCGAATTTACTGTTCATTCGGGT 58.428 39.130 22.95 0.00 46.03 5.28
308 312 5.539582 TTCGAATTTACTGTTCATTCGGG 57.460 39.130 22.95 6.98 46.03 5.14
309 313 6.853872 TGTTTTCGAATTTACTGTTCATTCGG 59.146 34.615 22.95 11.95 46.03 4.30
310 314 7.830217 TGTTTTCGAATTTACTGTTCATTCG 57.170 32.000 19.84 19.84 46.92 3.34
311 315 9.993881 CATTGTTTTCGAATTTACTGTTCATTC 57.006 29.630 0.00 0.00 0.00 2.67
312 316 9.743057 TCATTGTTTTCGAATTTACTGTTCATT 57.257 25.926 0.00 0.00 0.00 2.57
313 317 9.912634 ATCATTGTTTTCGAATTTACTGTTCAT 57.087 25.926 0.00 0.00 0.00 2.57
351 355 7.862512 TGCCACAAAAGAAAAATCTGATTTT 57.137 28.000 19.79 19.79 43.83 1.82
352 356 7.467675 GCTTGCCACAAAAGAAAAATCTGATTT 60.468 33.333 9.76 9.76 0.00 2.17
353 357 6.017687 GCTTGCCACAAAAGAAAAATCTGATT 60.018 34.615 0.00 0.00 0.00 2.57
354 358 5.467735 GCTTGCCACAAAAGAAAAATCTGAT 59.532 36.000 0.00 0.00 0.00 2.90
355 359 4.810491 GCTTGCCACAAAAGAAAAATCTGA 59.190 37.500 0.00 0.00 0.00 3.27
356 360 4.571580 TGCTTGCCACAAAAGAAAAATCTG 59.428 37.500 0.00 0.00 0.00 2.90
357 361 4.768583 TGCTTGCCACAAAAGAAAAATCT 58.231 34.783 0.00 0.00 0.00 2.40
358 362 5.678132 ATGCTTGCCACAAAAGAAAAATC 57.322 34.783 0.00 0.00 0.00 2.17
359 363 5.589452 TCAATGCTTGCCACAAAAGAAAAAT 59.411 32.000 0.00 0.00 0.00 1.82
360 364 4.940046 TCAATGCTTGCCACAAAAGAAAAA 59.060 33.333 0.00 0.00 0.00 1.94
361 365 4.511527 TCAATGCTTGCCACAAAAGAAAA 58.488 34.783 0.00 0.00 0.00 2.29
362 366 4.134379 TCAATGCTTGCCACAAAAGAAA 57.866 36.364 0.00 0.00 0.00 2.52
363 367 3.815856 TCAATGCTTGCCACAAAAGAA 57.184 38.095 0.00 0.00 0.00 2.52
364 368 3.555377 CCATCAATGCTTGCCACAAAAGA 60.555 43.478 0.00 0.00 0.00 2.52
365 369 2.739913 CCATCAATGCTTGCCACAAAAG 59.260 45.455 0.00 0.00 0.00 2.27
366 370 2.367894 TCCATCAATGCTTGCCACAAAA 59.632 40.909 0.00 0.00 0.00 2.44
367 371 1.969208 TCCATCAATGCTTGCCACAAA 59.031 42.857 0.00 0.00 0.00 2.83
368 372 1.630223 TCCATCAATGCTTGCCACAA 58.370 45.000 0.00 0.00 0.00 3.33
369 373 1.478916 CATCCATCAATGCTTGCCACA 59.521 47.619 0.00 0.00 0.00 4.17
370 374 1.479323 ACATCCATCAATGCTTGCCAC 59.521 47.619 0.00 0.00 0.00 5.01
371 375 1.855295 ACATCCATCAATGCTTGCCA 58.145 45.000 0.00 0.00 0.00 4.92
372 376 2.166870 TGAACATCCATCAATGCTTGCC 59.833 45.455 0.00 0.00 0.00 4.52
373 377 3.129813 TCTGAACATCCATCAATGCTTGC 59.870 43.478 0.00 0.00 0.00 4.01
386 390 7.301054 CAGTATTTTCAACCACTCTGAACATC 58.699 38.462 0.00 0.00 32.61 3.06
388 392 5.530915 CCAGTATTTTCAACCACTCTGAACA 59.469 40.000 0.00 0.00 32.61 3.18
392 396 3.820467 TGCCAGTATTTTCAACCACTCTG 59.180 43.478 0.00 0.00 0.00 3.35
399 403 6.183360 GCTAAAGCAATGCCAGTATTTTCAAC 60.183 38.462 0.00 0.00 41.59 3.18
400 404 5.868801 GCTAAAGCAATGCCAGTATTTTCAA 59.131 36.000 0.00 0.00 41.59 2.69
423 427 3.705043 AAAATCGATGCTCCAAGATGC 57.295 42.857 0.00 0.00 0.00 3.91
452 456 0.033228 CATGGAAGCCGTGGCAAAAA 59.967 50.000 14.29 0.00 44.88 1.94
453 457 0.825425 TCATGGAAGCCGTGGCAAAA 60.825 50.000 14.29 0.00 44.88 2.44
454 458 0.611618 ATCATGGAAGCCGTGGCAAA 60.612 50.000 14.29 0.00 44.88 3.68
457 461 1.031571 TTCATCATGGAAGCCGTGGC 61.032 55.000 1.67 1.67 40.65 5.01
458 462 1.133025 GTTTCATCATGGAAGCCGTGG 59.867 52.381 5.88 0.00 40.65 4.94
459 463 2.086869 AGTTTCATCATGGAAGCCGTG 58.913 47.619 0.00 0.00 41.56 4.94
460 464 2.496899 AGTTTCATCATGGAAGCCGT 57.503 45.000 0.00 0.00 0.00 5.68
461 465 3.504863 CAAAGTTTCATCATGGAAGCCG 58.495 45.455 0.00 0.00 0.00 5.52
462 466 3.256558 GCAAAGTTTCATCATGGAAGCC 58.743 45.455 0.00 0.00 0.00 4.35
463 467 3.916761 TGCAAAGTTTCATCATGGAAGC 58.083 40.909 0.00 0.00 0.00 3.86
464 468 5.291178 TGTTGCAAAGTTTCATCATGGAAG 58.709 37.500 0.00 0.00 0.00 3.46
474 482 4.683781 TGTGTTCAGTTGTTGCAAAGTTTC 59.316 37.500 0.00 0.00 0.00 2.78
565 573 2.151202 CACCAGCCGTGAACAGTAAAT 58.849 47.619 0.00 0.00 46.20 1.40
587 595 4.279420 TCTTCTGCACTCGAGCACATATAT 59.721 41.667 13.61 0.00 40.11 0.86
588 596 3.632145 TCTTCTGCACTCGAGCACATATA 59.368 43.478 13.61 0.00 40.11 0.86
614 622 1.477553 AGCAATGGACATGGCGAAAT 58.522 45.000 6.05 0.00 42.54 2.17
618 626 2.937469 TAAAAGCAATGGACATGGCG 57.063 45.000 6.05 0.00 42.54 5.69
650 658 8.531622 TTGGTTCAGTGCAATTATAACAAATG 57.468 30.769 0.00 0.00 0.00 2.32
651 659 8.584157 TCTTGGTTCAGTGCAATTATAACAAAT 58.416 29.630 0.00 0.00 0.00 2.32
659 667 3.496884 GTCGTCTTGGTTCAGTGCAATTA 59.503 43.478 0.00 0.00 0.00 1.40
671 679 1.300697 GAAGGTGCGTCGTCTTGGT 60.301 57.895 0.00 0.00 0.00 3.67
672 680 0.600255 AAGAAGGTGCGTCGTCTTGG 60.600 55.000 6.52 0.00 34.96 3.61
675 683 1.202486 TCAAAAGAAGGTGCGTCGTCT 60.202 47.619 0.00 0.00 0.00 4.18
678 686 0.111266 CGTCAAAAGAAGGTGCGTCG 60.111 55.000 0.00 0.00 0.00 5.12
766 778 0.768221 TCTCTGGGAAAGTGCAGGGT 60.768 55.000 0.00 0.00 0.00 4.34
821 833 3.184736 GGGAGTTCTCTCGCTCTCT 57.815 57.895 5.30 0.00 45.97 3.10
860 872 3.406559 GGCGAATTAGTGGACGGC 58.593 61.111 0.00 0.00 42.98 5.68
894 909 6.105333 GCTTTATAGGAGTGGATCATAGCAG 58.895 44.000 0.00 0.00 0.00 4.24
927 950 4.093952 CCAGCCAGAAGTTGCGCG 62.094 66.667 0.00 0.00 0.00 6.86
991 1014 3.766691 GGCTGGCATGGCTTGGTG 61.767 66.667 21.08 6.62 0.00 4.17
1176 1199 4.264638 GCGGAGAGCGAGGAGAGC 62.265 72.222 0.00 0.00 35.41 4.09
1551 1574 3.118454 CGTTTCTCGTGCGCCCAT 61.118 61.111 4.18 0.00 34.52 4.00
1773 1796 3.723348 GCCTGCGTTTCGTCCCAC 61.723 66.667 0.00 0.00 0.00 4.61
1872 1895 2.254546 ACAAGCCATCACGAGAAACA 57.745 45.000 0.00 0.00 0.00 2.83
1877 1900 3.780902 TGTATGTACAAGCCATCACGAG 58.219 45.455 0.00 0.00 32.40 4.18
1879 1902 5.047188 TGTATGTATGTACAAGCCATCACG 58.953 41.667 0.00 0.00 39.99 4.35
1880 1903 7.226523 TCAATGTATGTATGTACAAGCCATCAC 59.773 37.037 0.00 3.46 39.99 3.06
1881 1904 7.278875 TCAATGTATGTATGTACAAGCCATCA 58.721 34.615 0.00 4.11 39.99 3.07
1882 1905 7.728847 TCAATGTATGTATGTACAAGCCATC 57.271 36.000 0.00 0.00 39.99 3.51
1883 1906 9.219603 GTATCAATGTATGTATGTACAAGCCAT 57.780 33.333 0.00 5.14 39.99 4.40
1884 1907 8.207545 TGTATCAATGTATGTATGTACAAGCCA 58.792 33.333 0.00 0.00 39.99 4.75
1885 1908 8.601845 TGTATCAATGTATGTATGTACAAGCC 57.398 34.615 0.00 0.00 39.99 4.35
1931 1954 0.473326 ATCCCAGCTCATCCTTCTGC 59.527 55.000 0.00 0.00 0.00 4.26
1943 1966 3.766051 ACTTCAATCCTTTCAATCCCAGC 59.234 43.478 0.00 0.00 0.00 4.85
1968 1991 7.439381 TCCCGCCTAACTATAATCTTAACTTG 58.561 38.462 0.00 0.00 0.00 3.16
1969 1992 7.607615 TCCCGCCTAACTATAATCTTAACTT 57.392 36.000 0.00 0.00 0.00 2.66
1970 1993 7.607615 TTCCCGCCTAACTATAATCTTAACT 57.392 36.000 0.00 0.00 0.00 2.24
1971 1994 8.667076 TTTTCCCGCCTAACTATAATCTTAAC 57.333 34.615 0.00 0.00 0.00 2.01
1972 1995 9.856162 ATTTTTCCCGCCTAACTATAATCTTAA 57.144 29.630 0.00 0.00 0.00 1.85
2156 2179 1.401539 GCCACCAGAACGAAAGCATTC 60.402 52.381 0.00 0.00 0.00 2.67
2165 2188 1.197721 GAAGAACATGCCACCAGAACG 59.802 52.381 0.00 0.00 0.00 3.95
2200 2223 2.260844 TTCTGGCAAGTGGACAAGAG 57.739 50.000 0.00 0.00 30.64 2.85
2264 2287 1.891919 TGTGACTTGCCTTCGTGCC 60.892 57.895 0.00 0.00 0.00 5.01
2268 2291 1.571460 GCTGTGTGACTTGCCTTCG 59.429 57.895 0.00 0.00 0.00 3.79
2352 2378 4.719040 CTTTTTAGCCGATGTTGTACACC 58.281 43.478 0.00 0.00 0.00 4.16
2399 2425 5.365605 ACATCCATGCCATTTGAATCAAGAT 59.634 36.000 0.00 0.00 0.00 2.40
2481 2509 2.355132 CTGTTGCTTCATCTGCCTGATC 59.645 50.000 0.00 0.00 32.05 2.92
2511 2539 1.021202 CCGCAGTTTTGGAAGTGTCA 58.979 50.000 0.00 0.00 38.27 3.58
2513 2541 1.106944 CCCCGCAGTTTTGGAAGTGT 61.107 55.000 0.00 0.00 38.27 3.55
2531 2559 3.403558 GTCCTCTGGCTCCCACCC 61.404 72.222 0.00 0.00 0.00 4.61
2534 2562 3.539593 TTCCGTCCTCTGGCTCCCA 62.540 63.158 0.00 0.00 0.00 4.37
2535 2563 2.683933 TTCCGTCCTCTGGCTCCC 60.684 66.667 0.00 0.00 0.00 4.30
2537 2565 2.896443 CCTTCCGTCCTCTGGCTC 59.104 66.667 0.00 0.00 0.00 4.70
2539 2567 3.394836 AGCCTTCCGTCCTCTGGC 61.395 66.667 0.00 0.00 43.52 4.85
2549 2578 3.574354 AGGATTCATCTTCAGCCTTCC 57.426 47.619 0.00 0.00 0.00 3.46
2581 2610 1.301401 GTTGCCACGGTCAGCAGTA 60.301 57.895 2.96 0.00 40.73 2.74
2582 2611 2.591715 GTTGCCACGGTCAGCAGT 60.592 61.111 2.96 0.00 40.73 4.40
2619 2648 6.016777 AGACAATTTATAAGGTATGCAGCAGC 60.017 38.462 0.00 0.00 42.57 5.25
2620 2649 7.502120 AGACAATTTATAAGGTATGCAGCAG 57.498 36.000 0.00 0.00 0.00 4.24
2621 2650 7.880160 AAGACAATTTATAAGGTATGCAGCA 57.120 32.000 0.00 0.00 0.00 4.41
2622 2651 9.586435 AAAAAGACAATTTATAAGGTATGCAGC 57.414 29.630 0.00 0.00 0.00 5.25
2639 2668 9.567848 GTTCTATTTGTGTGAAGAAAAAGACAA 57.432 29.630 0.00 0.00 30.24 3.18
2640 2669 8.735315 TGTTCTATTTGTGTGAAGAAAAAGACA 58.265 29.630 0.00 0.00 30.24 3.41
2641 2670 9.736023 ATGTTCTATTTGTGTGAAGAAAAAGAC 57.264 29.630 0.00 0.00 30.24 3.01
2642 2671 9.950680 GATGTTCTATTTGTGTGAAGAAAAAGA 57.049 29.630 0.00 0.00 30.24 2.52
2643 2672 9.734620 TGATGTTCTATTTGTGTGAAGAAAAAG 57.265 29.630 0.00 0.00 30.24 2.27
2644 2673 9.515020 GTGATGTTCTATTTGTGTGAAGAAAAA 57.485 29.630 0.00 0.00 30.24 1.94
2645 2674 8.902806 AGTGATGTTCTATTTGTGTGAAGAAAA 58.097 29.630 0.00 0.00 30.24 2.29
2646 2675 8.450578 AGTGATGTTCTATTTGTGTGAAGAAA 57.549 30.769 0.00 0.00 30.24 2.52
2647 2676 7.933577 AGAGTGATGTTCTATTTGTGTGAAGAA 59.066 33.333 0.00 0.00 0.00 2.52
2648 2677 7.445121 AGAGTGATGTTCTATTTGTGTGAAGA 58.555 34.615 0.00 0.00 0.00 2.87
2649 2678 7.148507 GGAGAGTGATGTTCTATTTGTGTGAAG 60.149 40.741 0.00 0.00 0.00 3.02
2650 2679 6.650807 GGAGAGTGATGTTCTATTTGTGTGAA 59.349 38.462 0.00 0.00 0.00 3.18
2651 2680 6.014242 AGGAGAGTGATGTTCTATTTGTGTGA 60.014 38.462 0.00 0.00 0.00 3.58
2652 2681 6.091849 CAGGAGAGTGATGTTCTATTTGTGTG 59.908 42.308 0.00 0.00 0.00 3.82
2653 2682 6.169094 CAGGAGAGTGATGTTCTATTTGTGT 58.831 40.000 0.00 0.00 0.00 3.72
2654 2683 6.169094 ACAGGAGAGTGATGTTCTATTTGTG 58.831 40.000 0.00 0.00 0.00 3.33
2655 2684 6.365970 ACAGGAGAGTGATGTTCTATTTGT 57.634 37.500 0.00 0.00 0.00 2.83
2656 2685 6.652481 ACAACAGGAGAGTGATGTTCTATTTG 59.348 38.462 0.00 0.00 35.04 2.32
2657 2686 6.652481 CACAACAGGAGAGTGATGTTCTATTT 59.348 38.462 0.00 0.00 35.04 1.40
2658 2687 6.169094 CACAACAGGAGAGTGATGTTCTATT 58.831 40.000 0.00 0.00 35.04 1.73
2659 2688 5.728471 CACAACAGGAGAGTGATGTTCTAT 58.272 41.667 0.00 0.00 35.04 1.98
2660 2689 4.561530 GCACAACAGGAGAGTGATGTTCTA 60.562 45.833 0.00 0.00 35.04 2.10
2661 2690 3.805108 GCACAACAGGAGAGTGATGTTCT 60.805 47.826 0.00 0.00 35.04 3.01
2662 2691 2.481952 GCACAACAGGAGAGTGATGTTC 59.518 50.000 0.00 0.00 35.04 3.18
2663 2692 2.498167 GCACAACAGGAGAGTGATGTT 58.502 47.619 0.00 0.00 37.64 2.71
2664 2693 1.606480 CGCACAACAGGAGAGTGATGT 60.606 52.381 0.00 0.00 34.03 3.06
2665 2694 1.073964 CGCACAACAGGAGAGTGATG 58.926 55.000 0.00 0.00 35.33 3.07
2666 2695 0.036952 CCGCACAACAGGAGAGTGAT 60.037 55.000 0.00 0.00 35.33 3.06
2667 2696 1.367471 CCGCACAACAGGAGAGTGA 59.633 57.895 0.00 0.00 35.33 3.41
2668 2697 0.946221 GACCGCACAACAGGAGAGTG 60.946 60.000 0.00 0.00 36.39 3.51
2669 2698 1.367840 GACCGCACAACAGGAGAGT 59.632 57.895 0.00 0.00 0.00 3.24
2670 2699 1.374758 GGACCGCACAACAGGAGAG 60.375 63.158 0.00 0.00 0.00 3.20
2671 2700 2.137528 TGGACCGCACAACAGGAGA 61.138 57.895 0.00 0.00 0.00 3.71
2672 2701 1.961277 GTGGACCGCACAACAGGAG 60.961 63.158 0.00 0.00 0.00 3.69
2673 2702 2.050836 ATGTGGACCGCACAACAGGA 62.051 55.000 10.61 0.00 36.06 3.86
2674 2703 0.321210 TATGTGGACCGCACAACAGG 60.321 55.000 10.61 0.00 36.06 4.00
2675 2704 1.518325 TTATGTGGACCGCACAACAG 58.482 50.000 10.61 0.00 36.06 3.16
2676 2705 2.080693 GATTATGTGGACCGCACAACA 58.919 47.619 10.61 0.00 36.06 3.33
2677 2706 2.351726 GAGATTATGTGGACCGCACAAC 59.648 50.000 10.61 0.39 36.06 3.32
2678 2707 2.627945 GAGATTATGTGGACCGCACAA 58.372 47.619 10.61 5.34 36.06 3.33
2679 2708 1.470805 CGAGATTATGTGGACCGCACA 60.471 52.381 10.61 0.00 36.95 4.57
2680 2709 1.202371 TCGAGATTATGTGGACCGCAC 60.202 52.381 10.61 0.00 0.00 5.34
2681 2710 1.067060 CTCGAGATTATGTGGACCGCA 59.933 52.381 10.83 10.83 0.00 5.69
2682 2711 1.337071 TCTCGAGATTATGTGGACCGC 59.663 52.381 12.08 0.00 0.00 5.68
2683 2712 2.357952 TGTCTCGAGATTATGTGGACCG 59.642 50.000 19.90 0.00 0.00 4.79
2684 2713 4.386867 TTGTCTCGAGATTATGTGGACC 57.613 45.455 19.90 1.75 0.00 4.46
2685 2714 6.910536 AATTTGTCTCGAGATTATGTGGAC 57.089 37.500 19.90 3.47 0.00 4.02
2686 2715 7.782049 AGTAATTTGTCTCGAGATTATGTGGA 58.218 34.615 19.90 0.00 0.00 4.02
2687 2716 8.425577 AAGTAATTTGTCTCGAGATTATGTGG 57.574 34.615 19.90 0.00 0.00 4.17
2688 2717 9.087424 TGAAGTAATTTGTCTCGAGATTATGTG 57.913 33.333 19.90 0.00 0.00 3.21
2689 2718 9.307121 CTGAAGTAATTTGTCTCGAGATTATGT 57.693 33.333 19.90 7.23 0.00 2.29
2690 2719 9.521503 TCTGAAGTAATTTGTCTCGAGATTATG 57.478 33.333 19.90 3.04 0.00 1.90
2691 2720 9.522804 GTCTGAAGTAATTTGTCTCGAGATTAT 57.477 33.333 19.90 9.52 0.00 1.28
2692 2721 8.520351 TGTCTGAAGTAATTTGTCTCGAGATTA 58.480 33.333 19.90 10.17 0.00 1.75
2693 2722 7.378966 TGTCTGAAGTAATTTGTCTCGAGATT 58.621 34.615 19.90 11.24 0.00 2.40
2694 2723 6.925211 TGTCTGAAGTAATTTGTCTCGAGAT 58.075 36.000 19.90 4.39 0.00 2.75
2695 2724 6.327279 TGTCTGAAGTAATTTGTCTCGAGA 57.673 37.500 12.08 12.08 0.00 4.04
2696 2725 5.061560 GCTGTCTGAAGTAATTTGTCTCGAG 59.938 44.000 5.93 5.93 0.00 4.04
2697 2726 4.923871 GCTGTCTGAAGTAATTTGTCTCGA 59.076 41.667 0.00 0.00 0.00 4.04
2698 2727 4.686091 TGCTGTCTGAAGTAATTTGTCTCG 59.314 41.667 0.00 0.00 0.00 4.04
2699 2728 5.390356 GCTGCTGTCTGAAGTAATTTGTCTC 60.390 44.000 0.00 0.00 0.00 3.36
2700 2729 4.453819 GCTGCTGTCTGAAGTAATTTGTCT 59.546 41.667 0.00 0.00 0.00 3.41
2701 2730 4.214119 TGCTGCTGTCTGAAGTAATTTGTC 59.786 41.667 0.00 0.00 0.00 3.18
2702 2731 4.136796 TGCTGCTGTCTGAAGTAATTTGT 58.863 39.130 0.00 0.00 0.00 2.83
2703 2732 4.754372 TGCTGCTGTCTGAAGTAATTTG 57.246 40.909 0.00 0.00 0.00 2.32
2704 2733 5.065914 TCTTGCTGCTGTCTGAAGTAATTT 58.934 37.500 0.00 0.00 0.00 1.82
2705 2734 4.645535 TCTTGCTGCTGTCTGAAGTAATT 58.354 39.130 0.00 0.00 0.00 1.40
2706 2735 4.277515 TCTTGCTGCTGTCTGAAGTAAT 57.722 40.909 0.00 0.00 0.00 1.89
2707 2736 3.751479 TCTTGCTGCTGTCTGAAGTAA 57.249 42.857 0.00 0.00 0.00 2.24
2708 2737 3.751479 TTCTTGCTGCTGTCTGAAGTA 57.249 42.857 0.00 0.00 0.00 2.24
2709 2738 2.627515 TTCTTGCTGCTGTCTGAAGT 57.372 45.000 0.00 0.00 0.00 3.01
2710 2739 5.814764 ATATTTCTTGCTGCTGTCTGAAG 57.185 39.130 0.00 0.00 0.00 3.02
2711 2740 5.706833 TCAATATTTCTTGCTGCTGTCTGAA 59.293 36.000 0.00 0.00 0.00 3.02
2712 2741 5.122869 GTCAATATTTCTTGCTGCTGTCTGA 59.877 40.000 0.00 0.00 0.00 3.27
2713 2742 5.106436 TGTCAATATTTCTTGCTGCTGTCTG 60.106 40.000 0.00 0.00 0.00 3.51
2714 2743 5.005740 TGTCAATATTTCTTGCTGCTGTCT 58.994 37.500 0.00 0.00 0.00 3.41
2715 2744 5.300969 TGTCAATATTTCTTGCTGCTGTC 57.699 39.130 0.00 0.00 0.00 3.51
2716 2745 5.706916 CTTGTCAATATTTCTTGCTGCTGT 58.293 37.500 0.00 0.00 0.00 4.40
2717 2746 4.561606 GCTTGTCAATATTTCTTGCTGCTG 59.438 41.667 0.00 0.00 0.00 4.41
2718 2747 4.219070 TGCTTGTCAATATTTCTTGCTGCT 59.781 37.500 0.00 0.00 0.00 4.24
2719 2748 4.487948 TGCTTGTCAATATTTCTTGCTGC 58.512 39.130 0.00 0.00 0.00 5.25
2720 2749 6.154445 AGTTGCTTGTCAATATTTCTTGCTG 58.846 36.000 0.00 0.00 36.99 4.41
2721 2750 6.336842 AGTTGCTTGTCAATATTTCTTGCT 57.663 33.333 0.00 0.00 36.99 3.91
2722 2751 7.530010 TCTAGTTGCTTGTCAATATTTCTTGC 58.470 34.615 0.00 0.00 36.99 4.01
2723 2752 9.713740 GATCTAGTTGCTTGTCAATATTTCTTG 57.286 33.333 0.00 0.00 36.99 3.02
2724 2753 9.453572 TGATCTAGTTGCTTGTCAATATTTCTT 57.546 29.630 0.00 0.00 36.99 2.52
2725 2754 9.624373 ATGATCTAGTTGCTTGTCAATATTTCT 57.376 29.630 0.00 0.00 36.99 2.52
2729 2758 8.844244 GGAAATGATCTAGTTGCTTGTCAATAT 58.156 33.333 0.00 0.00 36.99 1.28
2730 2759 8.049117 AGGAAATGATCTAGTTGCTTGTCAATA 58.951 33.333 0.00 0.00 30.60 1.90
2731 2760 6.888632 AGGAAATGATCTAGTTGCTTGTCAAT 59.111 34.615 0.00 0.00 30.60 2.57
2732 2761 6.149973 CAGGAAATGATCTAGTTGCTTGTCAA 59.850 38.462 0.00 0.00 32.55 3.18
2733 2762 5.645067 CAGGAAATGATCTAGTTGCTTGTCA 59.355 40.000 0.00 0.00 32.55 3.58
2734 2763 5.645497 ACAGGAAATGATCTAGTTGCTTGTC 59.355 40.000 0.00 0.00 32.55 3.18
2735 2764 5.564550 ACAGGAAATGATCTAGTTGCTTGT 58.435 37.500 0.00 0.00 32.55 3.16
2736 2765 7.010923 GTCTACAGGAAATGATCTAGTTGCTTG 59.989 40.741 0.00 0.00 32.55 4.01
2737 2766 7.044798 GTCTACAGGAAATGATCTAGTTGCTT 58.955 38.462 0.00 0.00 32.55 3.91
2738 2767 6.382570 AGTCTACAGGAAATGATCTAGTTGCT 59.617 38.462 0.00 0.00 35.34 3.91
2739 2768 6.478344 CAGTCTACAGGAAATGATCTAGTTGC 59.522 42.308 0.00 0.00 0.00 4.17
2740 2769 6.478344 GCAGTCTACAGGAAATGATCTAGTTG 59.522 42.308 0.00 0.00 0.00 3.16
2741 2770 6.155221 TGCAGTCTACAGGAAATGATCTAGTT 59.845 38.462 0.00 0.00 0.00 2.24
2742 2771 5.658634 TGCAGTCTACAGGAAATGATCTAGT 59.341 40.000 0.00 0.00 0.00 2.57
2743 2772 6.040278 TCTGCAGTCTACAGGAAATGATCTAG 59.960 42.308 14.67 0.00 35.78 2.43
2744 2773 5.893824 TCTGCAGTCTACAGGAAATGATCTA 59.106 40.000 14.67 0.00 35.78 1.98
2745 2774 4.713814 TCTGCAGTCTACAGGAAATGATCT 59.286 41.667 14.67 0.00 35.78 2.75
2746 2775 5.016051 TCTGCAGTCTACAGGAAATGATC 57.984 43.478 14.67 0.00 35.78 2.92
2747 2776 5.454471 GGATCTGCAGTCTACAGGAAATGAT 60.454 44.000 14.67 0.00 35.78 2.45
2748 2777 4.141846 GGATCTGCAGTCTACAGGAAATGA 60.142 45.833 14.67 0.00 35.78 2.57
2749 2778 4.125703 GGATCTGCAGTCTACAGGAAATG 58.874 47.826 14.67 0.00 35.78 2.32
2750 2779 4.036518 AGGATCTGCAGTCTACAGGAAAT 58.963 43.478 14.67 0.00 35.78 2.17
2751 2780 3.445008 AGGATCTGCAGTCTACAGGAAA 58.555 45.455 14.67 0.00 35.78 3.13
2752 2781 3.107402 AGGATCTGCAGTCTACAGGAA 57.893 47.619 14.67 0.00 35.78 3.36
2753 2782 2.836636 AGGATCTGCAGTCTACAGGA 57.163 50.000 14.67 0.00 35.78 3.86
2754 2783 4.343526 ACATAAGGATCTGCAGTCTACAGG 59.656 45.833 14.67 6.42 35.78 4.00
2755 2784 5.528043 ACATAAGGATCTGCAGTCTACAG 57.472 43.478 14.67 0.00 36.44 2.74
2756 2785 5.664457 CAACATAAGGATCTGCAGTCTACA 58.336 41.667 14.67 0.00 0.00 2.74
2757 2786 4.509600 GCAACATAAGGATCTGCAGTCTAC 59.490 45.833 14.67 3.26 33.19 2.59
2758 2787 4.406972 AGCAACATAAGGATCTGCAGTCTA 59.593 41.667 14.67 0.00 35.44 2.59
2759 2788 3.199508 AGCAACATAAGGATCTGCAGTCT 59.800 43.478 14.67 7.35 35.44 3.24
2760 2789 3.311871 CAGCAACATAAGGATCTGCAGTC 59.688 47.826 14.67 10.44 35.44 3.51
2761 2790 3.276857 CAGCAACATAAGGATCTGCAGT 58.723 45.455 14.67 0.42 35.44 4.40
2762 2791 3.276857 ACAGCAACATAAGGATCTGCAG 58.723 45.455 7.63 7.63 35.44 4.41
2763 2792 3.354948 ACAGCAACATAAGGATCTGCA 57.645 42.857 4.00 0.00 35.44 4.41
2764 2793 5.762218 AGATTACAGCAACATAAGGATCTGC 59.238 40.000 0.00 0.00 0.00 4.26
2765 2794 8.768955 GTTAGATTACAGCAACATAAGGATCTG 58.231 37.037 0.00 0.00 0.00 2.90
2766 2795 7.653713 CGTTAGATTACAGCAACATAAGGATCT 59.346 37.037 0.00 0.00 0.00 2.75
2767 2796 7.652105 TCGTTAGATTACAGCAACATAAGGATC 59.348 37.037 0.00 0.00 0.00 3.36
2768 2797 7.497595 TCGTTAGATTACAGCAACATAAGGAT 58.502 34.615 0.00 0.00 0.00 3.24
2769 2798 6.869695 TCGTTAGATTACAGCAACATAAGGA 58.130 36.000 0.00 0.00 0.00 3.36
2770 2799 7.715265 ATCGTTAGATTACAGCAACATAAGG 57.285 36.000 0.00 0.00 32.03 2.69
2771 2800 9.678941 TCTATCGTTAGATTACAGCAACATAAG 57.321 33.333 0.00 0.00 38.26 1.73
2773 2802 9.626045 CATCTATCGTTAGATTACAGCAACATA 57.374 33.333 12.37 0.00 41.47 2.29
2774 2803 7.600375 CCATCTATCGTTAGATTACAGCAACAT 59.400 37.037 12.37 0.00 41.47 2.71
2775 2804 6.923508 CCATCTATCGTTAGATTACAGCAACA 59.076 38.462 12.37 0.00 41.47 3.33
2776 2805 6.924060 ACCATCTATCGTTAGATTACAGCAAC 59.076 38.462 12.37 0.00 41.47 4.17
2777 2806 6.923508 CACCATCTATCGTTAGATTACAGCAA 59.076 38.462 12.37 0.00 41.47 3.91
2778 2807 6.447162 CACCATCTATCGTTAGATTACAGCA 58.553 40.000 12.37 0.00 41.47 4.41
2779 2808 5.864474 CCACCATCTATCGTTAGATTACAGC 59.136 44.000 12.37 0.00 41.47 4.40
2780 2809 5.864474 GCCACCATCTATCGTTAGATTACAG 59.136 44.000 12.37 5.91 41.47 2.74
2781 2810 5.303333 TGCCACCATCTATCGTTAGATTACA 59.697 40.000 12.37 5.38 41.47 2.41
2782 2811 5.779922 TGCCACCATCTATCGTTAGATTAC 58.220 41.667 12.37 3.32 41.47 1.89
2783 2812 6.605471 ATGCCACCATCTATCGTTAGATTA 57.395 37.500 12.37 0.00 41.47 1.75
2784 2813 4.955811 TGCCACCATCTATCGTTAGATT 57.044 40.909 12.37 0.00 41.47 2.40
2785 2814 5.247110 AGAATGCCACCATCTATCGTTAGAT 59.753 40.000 9.73 9.73 44.39 1.98
2786 2815 4.588951 AGAATGCCACCATCTATCGTTAGA 59.411 41.667 5.71 5.71 38.79 2.10
2787 2816 4.887748 AGAATGCCACCATCTATCGTTAG 58.112 43.478 0.00 0.00 0.00 2.34
2788 2817 4.262463 GGAGAATGCCACCATCTATCGTTA 60.262 45.833 0.00 0.00 0.00 3.18
2789 2818 3.495100 GGAGAATGCCACCATCTATCGTT 60.495 47.826 0.00 0.00 0.00 3.85
2790 2819 2.037772 GGAGAATGCCACCATCTATCGT 59.962 50.000 0.00 0.00 0.00 3.73
2791 2820 2.037641 TGGAGAATGCCACCATCTATCG 59.962 50.000 0.00 0.00 31.66 2.92
2792 2821 3.072184 ACTGGAGAATGCCACCATCTATC 59.928 47.826 0.00 0.00 33.52 2.08
2793 2822 3.051581 ACTGGAGAATGCCACCATCTAT 58.948 45.455 0.00 0.00 33.52 1.98
2794 2823 2.171237 CACTGGAGAATGCCACCATCTA 59.829 50.000 0.00 0.00 33.52 1.98
2795 2824 1.064906 CACTGGAGAATGCCACCATCT 60.065 52.381 0.00 0.00 33.52 2.90
2796 2825 1.065199 TCACTGGAGAATGCCACCATC 60.065 52.381 0.00 0.00 33.52 3.51
2797 2826 0.994247 TCACTGGAGAATGCCACCAT 59.006 50.000 0.00 0.00 33.52 3.55
2798 2827 0.770499 TTCACTGGAGAATGCCACCA 59.230 50.000 0.00 0.00 33.52 4.17
2799 2828 1.168714 GTTCACTGGAGAATGCCACC 58.831 55.000 0.00 0.00 33.52 4.61
2800 2829 0.798776 CGTTCACTGGAGAATGCCAC 59.201 55.000 0.00 0.00 33.52 5.01
2801 2830 3.231734 CGTTCACTGGAGAATGCCA 57.768 52.632 0.00 0.00 36.30 4.92
2804 2833 2.606725 GAGATGCGTTCACTGGAGAATG 59.393 50.000 0.00 0.00 37.53 2.67
2805 2834 2.736719 CGAGATGCGTTCACTGGAGAAT 60.737 50.000 0.00 0.00 34.64 2.40
2806 2835 1.402852 CGAGATGCGTTCACTGGAGAA 60.403 52.381 0.00 0.00 34.64 2.87
2807 2836 0.171231 CGAGATGCGTTCACTGGAGA 59.829 55.000 0.00 0.00 34.64 3.71
2808 2837 2.658538 CGAGATGCGTTCACTGGAG 58.341 57.895 0.00 0.00 34.64 3.86
2809 2838 4.889427 CGAGATGCGTTCACTGGA 57.111 55.556 0.00 0.00 34.64 3.86
2819 2848 3.165058 TGTATGACTTCCACGAGATGC 57.835 47.619 0.00 0.00 0.00 3.91
2820 2849 4.748892 ACTTGTATGACTTCCACGAGATG 58.251 43.478 0.00 0.00 0.00 2.90
2821 2850 4.462834 TGACTTGTATGACTTCCACGAGAT 59.537 41.667 0.00 0.00 0.00 2.75
2822 2851 3.824443 TGACTTGTATGACTTCCACGAGA 59.176 43.478 0.00 0.00 0.00 4.04
2823 2852 4.174411 TGACTTGTATGACTTCCACGAG 57.826 45.455 0.00 0.00 0.00 4.18
2824 2853 4.381612 GGATGACTTGTATGACTTCCACGA 60.382 45.833 0.00 0.00 0.00 4.35
2825 2854 3.865745 GGATGACTTGTATGACTTCCACG 59.134 47.826 0.00 0.00 0.00 4.94
2826 2855 4.832248 TGGATGACTTGTATGACTTCCAC 58.168 43.478 0.00 0.00 33.66 4.02
2827 2856 5.491070 CTTGGATGACTTGTATGACTTCCA 58.509 41.667 0.00 0.00 35.49 3.53
2828 2857 4.333926 GCTTGGATGACTTGTATGACTTCC 59.666 45.833 0.00 0.00 0.00 3.46
2829 2858 4.937620 TGCTTGGATGACTTGTATGACTTC 59.062 41.667 0.00 0.00 0.00 3.01
2830 2859 4.910195 TGCTTGGATGACTTGTATGACTT 58.090 39.130 0.00 0.00 0.00 3.01
2831 2860 4.511527 CTGCTTGGATGACTTGTATGACT 58.488 43.478 0.00 0.00 0.00 3.41
2832 2861 3.064545 GCTGCTTGGATGACTTGTATGAC 59.935 47.826 0.00 0.00 0.00 3.06
2833 2862 3.273434 GCTGCTTGGATGACTTGTATGA 58.727 45.455 0.00 0.00 0.00 2.15
2834 2863 3.011818 TGCTGCTTGGATGACTTGTATG 58.988 45.455 0.00 0.00 0.00 2.39
2835 2864 3.276857 CTGCTGCTTGGATGACTTGTAT 58.723 45.455 0.00 0.00 0.00 2.29
2836 2865 2.616256 CCTGCTGCTTGGATGACTTGTA 60.616 50.000 0.00 0.00 0.00 2.41
2837 2866 1.531423 CTGCTGCTTGGATGACTTGT 58.469 50.000 0.00 0.00 0.00 3.16
2838 2867 0.809385 CCTGCTGCTTGGATGACTTG 59.191 55.000 0.00 0.00 0.00 3.16
2839 2868 3.261250 CCTGCTGCTTGGATGACTT 57.739 52.632 0.00 0.00 0.00 3.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.