>input_sequence_66985
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--------------------------------------------------------------ATGCCAGCCATGTACGCG
CTGACCCCCCGCTGCACCCTCCCGCCGGTGCACCGCCGCGCGCCGCCGCCGTGCCGGGCGGCCTCGCCGACGCCGGCGGC
GCTGGCCCGCGCCGACCCGGACGAGCTGCGGTCCACGTGGCCGCAGCGCGCGTGGACGCTGGCCGGCTCGGCCGCCGTGC
TCTCCTCGCTCTCCGCGTCCGCCTCCCTCGCCGCCGACTCCGGCTCCTACGCCGAGCCGCTCGCCGCCGCCCTCGCCGCC
TACACCGTCGCCGACCTCGCCACGGGCGTCTACCACTGGCTCGTCGACAACTACGGGGACGCCTCCACGCCCCTCGTCGG
CGCGCAGATCGCCGCCTTCCAGGGCCACCACCGCCACCCCTCCACCATCACGCGCCGGGAGCCCTGCAACAACCTGCACG
CGCTGGCGCGCGCCGTCGCGCTCGCGCTCCCCGCCGTGGAGGGCGCGGCGGCCGCCGCCCACGCGCCGGCCGCCGCGCAC
GCCTTCGCGGGGACCTTCGCGGCGTGCGTGGTGCTGAGCCAGCAGTTCCACGCATGGGCGCACGAGAAACGCCGCCGGCT
GCCGCCCGGCGTCGAGGCGCTGCAGGCCGCCGGCGTGCTGGTGTCGCGCGCGCAGCACGCCGCGCACCACCGCCAGCCCT
ACAGCACCAACTACTGCATCCTCAGCGGCGTGTGGAACGGGGTGCTGGACAGGCACAAGGTGTTCGAGGCGCTGGAGATG
GTCGTCTTCTTCCGCACCGGCGTCCGCCCGCGGTCGTGGGACGAAACGCAGGCCGCCTGGATGGAGGACACCAGCGGCGC
CGCCGCCGTCACCGCCATCGCTGTTACTGACAGTTCGTAA----------------------------------------
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>chr6A_1_TraesCS6A01G111600
ACACGACAAGTGGGTTCGATCTAGCTAGCATGTCATGGTGGTGTCCCGTGTGCGGCCTCCTATCGGATGGTGGCCTCCAT
CACTTGTTTGGTTTTCGGCATGATTTCCCTCGGCCACTAACATTTTCAATCCGGTTTCGGCTCTCTTTTTGATGAATTGC
--AAATATCTTGAATCTTTGGGTTTTCAGGGG-AAAAAAAGGCAAAATCACAAATTGTGCGTGTGCTAAAGGCTCAACCA
TTTAATATTCTTTGCACATGCAATTCGACCATTTCCAGGACACAGAGTTTCTGCTGTCAAGAACATATGAACCCGAATGA
ACAGTAAATTCGAAAACAATGATAAAAATATTCAAAAATCAGATTTTTCTTTTGTGGCAAGCATTGATGGATGTTCAGAG
TGGTTGAAAATACTGGCATTGCTTTAGCATCTTGGAGCATCGATTTTTTATTATTTTTTTGCCACGGC----TTCCATGA
TGAAACTTTGCAACAACTGAACACATTCAGCAATGTTTTATACACATATAAAAAGTTCATATTCTTTTGAGAAAATTTAC
CATTATTTTTGAATTTACTGTTCACGGCTGGTGCATATATGTGCTCGAGTGCAGAAGAGCAATTTCGCCATGTCCATTGC
TTTTAAGTGTCAGTACACATTTGTTATAATTGCACTGAACCAAGACGACGCACCTTCTTTTGACGCAAACACCAC----A
AGTTACCACGTAGTTCATCACTCCACCACATACATGGCTCACAAGTAAACAGCCATAACCCTGCACTTTCCCAGAGAGAA
AGCGATTTGAGAGGGAGAGAGATGAGACGAGGAGAGAGCGAGAGAACTCCCTACATACTACGAGTTAAATTGCCGTCCAC
TAAT---TCGCCATTGTGGACTCACCATCTGCTATG--------ATCCACTCCTATAAAGCCAGCAGCCCGCGCAACTTC
TGGCTGGAATTCGTTTTGAACGAAAGCGGATCACGCGCGTACGTGGAAGCAGACACCAAGCCATGCCAGCCATGTACGCG
CTGACCCCCCGCTGCACCCTCCCGCCGGTGCACCGCCGCGCGCCGCCGCCGTGCCGGGCGGCCTCGCCGACGCCGGCGGC
GCTGGCCCGCGCCGACCCGGACGAGCTGCGGTCCACGTGGCCGCAGCGCGCGTGGACGCTGGCCGGCTCGGCCGCCGTGC
TCTCCTCGCTCTCCGCGTCCGCCTCCCTCGCCGCCGACTCCGGCTCCTACGCCGAGCCGCTCGCCGCCGCCCTCGCCGCC
TACACCGTCGCCGACCTCGCCACGGGCGTCTACCACTGGCTCGTCGACAACTACGGGGACGCCTCCACGCCCCTCGTCGG
CGCGCAGATCGCCGCCTTCCAGGGCCACCACCGCCACCCCTCCACCATCACGCGCCGGGAGCCCTGCAACAACCTGCACG
CGCTGGCGCGCGCCGTCGCGCTCGCGCTCCCCGCCGTGGAGGGCGCGGCGGCCGCCGCCCACGCGCCGGCCGCCGCGCAC
GCCTTCGCGGGGACCTTCGCGGCGTGCGTGGTGCTGAGCCAGCAGTTCCACGCATGGGCGCACGAGAAACGCCGCCGGCT
GCCGCCCGGCGTCGAGGCGCTGCAGGCCGCCGGCGTGCTGGTGTCGCGCGCGCAGCACGCCGCGCACCACCGCCAGCCCT
ACAGCACCAACTACTGCATCCTCAGCGGCGTGTGGAACGGGGTGCTGGACAGGCACAAGGTGTTCGAGGCGCTGGAGATG
GTCGTCTTCTTCCGCACCGGCGTCCGCCCGCGGTCGTGGGACGAAACGCAGGCCGCCTGGATGGAGGACACCAGCGGCGC
CGCCGCCGTCACCGCCATCGCTGTTACTGACAGTTCGTAACATACATCGAGCATTGTTTCTCGTGATGGCTTGTACATAC
ATACATTGATACATACTACGATTCAAAAGGTATGCAGAAGGATGAGCTGGGATTGAAAGGATTGAAGTAACAAGTTAAGA
TTATAGTTAGGCGGGAAAAATATAATATTTAATGTATATTTTAGGTTGGTTTTGAGGATGCAAATCTTGTGGTGTATGCG
AAGAGAAGAGAATTTTTCATAGTTGAAAATGTGATGATTTTTTATGGTCTTCAGTCTGTCTACGACAACTTTTGTTACCC
ACAGCTTTCTTGTGGTGCGAATGCTTTCGTTCTGGTGGCATGTTCTTCGGATATCCAGTATCCTCTTGTCCACTTGCCAG
AAAAAAGCACAGCCAGTTGAGATGATCAACTCTTTGCAACAACATTGGCACGAAGGCAAGTCACACAGCCACACATGCAT
ATGTCTTAAATCTGCTTATATCTATCGAA---TATGTGTTAATCCATCCACCAAAAGGGTGTACAACATCGGCTAAAAAG
CTTATTTGAGGCTCAGACCATCTGATCTTGATTCAAATGGCATGGATGTGAATCACATGTCTAGAGATTCTAT--TTTTT
GGCGCCTCAATCTCGAGCATCGATCCTGGATCAGGCAGATGAAGCAACAGAAACAAGCTGACACTTCCAAAACTGCGGGG
GTGGGAGCC-AGAGGACGGAAGGCTGAAGATGAATCCTTCAGCTGGAAGTACTGCTGACCGTGGCAACCGCTTCCAAGCA
AGGAGATGCTGCTGCATACCTTATAAATTGTCTTTTTCTTCACACAAATAGAACATCACTCTCCTGTTGTGCGGTCCACA
TAATCTCGAGACAAATTACTTCAGACAGCAGCAAGAAATATTGACAAGCAACTAGATCATTTCCTGTAGACTGCAGATCC
TTATGTTGCTGTAATCTAACGATAGATGGTGGCATTCTCCAGTGAACGCATCTCGTGGAAGTCATACAAGTCATCCAAGC
AGCAGG
>chr6B_83
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--CTTGTTTGGTTTTCGGCATGATTTCCCTCGGCCATTAACATTTTCGATACGGTTTCAACTCTCTTCTTAGTGAATTGC
AAAAATGTCTTGAATCTTTGGGGTTTGGCGCAAAAAAAAAGGCAAAACCACAATTTGTGCATGTGCTAAAGGCT------
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---------------------------------------------------------CAAGCATTGATGAACGTTTAGAG
TGCATGGAAATAATGGCATTGCTTTAACATCTTGGAGCACTGATTTTTTTTCAAGGACTTCTGCGAATGTCATTCCATGA
TAAAACTTTGCAAGCACTCAACACATTCAGCAATGTTTTATACACACACAAAAAGTTCATATTCTTTTGAGAAAATTTAC
CATTATTTTTGAGTTTACTGTTCACGGCAGGTGC--ATATGTGCTCGAGTGCAGAAGAGCATTTTGGCCATGTCCATTGC
TTTCAAGTGTCAGTACAATTTTGTTAGAATTGCACTGAGTCAGGATGACGCACCTTCTTTTGA-GCAAACACCAC----A
AGTTACCACGTAGTTCATCACTCCACCACATACATGGCTCACAAGTAAACAGCCATAGCCGTGCACTTTCCCAGAGAGAA
AGCGATTTGAGAGGGAGAGAGATGAGACGAGGGGAGATGGAGAGAACTCCCTACATACGAGTTCATCACTCCA---CCAC
TAATAATTCGCCGTCGTCGACTCACCATTTGCTATG--------ATCTACTCCTATAAAGCCAGCAGACTGCGCAACTTC
TGGCTGGAATTCGTTTTGAACGAAAGCCGATCACGCGCGTACGTGGAAGCAGAGGCCAAGCCATGCCAGCCATGTACGCG
CTGACCCCCCGCTGCACCCTCCCGCCG---CACCGCCGGGCGCCGCCGCCGTGCCGGGCGGCCTCGCCGACGCCGGCGGC
GCTGGCCCGCGCCGACCCGGACGAGCTGCGGTCCACGTGGCCGCAGCGCGCGTGGACGCTGGCCGGCTCGGCCGCCGTCC
TCTCCTCGCTGTCCGCGTCCGCCTCCCTCGCCGCTGACTCCGGCTCCTACGCCGAGCCGCTCGCCGCCGCGCTCGCCGCC
TACACCGTCGCCGACCTCGCCACGGGCGTCTACCACTGGCTCGTCGACAACTACGGGGACGCCTCCACGCCGCTCGTCGG
CGCGCAGATCGCCGCCTTCCAGGGCCACCACCGCCACCCCTCCACCATCACGCGCCGGGAGCCCTGCAACAACCTGCACG
CGCTGGCGCGCGCCGTGGCGCTCGCGCTCCCCGCCGTGGAGGCCGCGGCCGCGGCCGCCCACGCGCCGGCCGCCGCGCAC
GCCTTCGCGGGCACCTTCGCGGCGTGCGTGGTGCTGAGCCAGCAGTTCCACGCGTGGGCGCACGAGAAGCGCCGCCGGCT
GCCGCCCGGCGTCGAGGCGCTGCAGGCCGCCGGCGTGCTGGTGTCGCGCGCGCAGCACGCCGCGCACCACCGCCAGCCCT
ACAGCACCAACTACTGCATCCTCAGCGGCGTGTGGAACGGGGTGCTGGACAGGCACAAGGTGTTCGAGGCGCTGGAGATG
GTCGTCTTCTTCCGCACCGGCGTCCGCCCGCGCTCATGGGACGAAACGCAGGCCGCCTGGATGGAGGACACCGGCAGCGC
CG---------CCGCCGTCGCTCTGACTGACAGTTCGTAACATACATCGAGCATCTTTTTTGAGTGATGGCCTG------
-----TACATACATACTACGGTTCAAAAGGTATACAGA-GGATGAACTGGGATTGAATGGATTCAAGTAA------ACGA
GTTTAGCTAGGTGGGAAAATATAAATATTTAATGTATATTTTAGGTTGGTTTTGAGGATGCAAATCTTGTGGTGTATGCA
AAGAGAAAAGAATTCTTTTCAATTGAAAATGTGATGATTTTTCATGGTCTTCAGTCTGTCTACGACAACTTTTGTTACCC
ACGGCTTTCTTGTGGTGCAAATGCATTTGTTCTGGTGGCATGTTCGTCGGATATCCA-TATCTTCTTGTCCACTTGCCAG
AAAAAAGCACAACCAGTTGAGATGATCAACTCTTTGCAATCACAG---------------------AGCCACACATGCAT
ATGTCTTAAATCTACATATATCTATCGAGTACTATGTGTTAATTCATCCACCAAAAGTGCGTACAACATCGGCTAAAAAG
CTTATTTGAGACTCAGA---------------------------------------------------------------
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>chr6D_680
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----------------------------------------------GACGCGGCTTCTTTTGACGCAAACACCACCACAA
AGTTACCACGTAGTTCATCACTCCACCACATACATGGCTCACAAGTAAACAGCCATAGCCCTGCACTTTTCCAGAGAGAA
AGCGATTTGAGAGGGAGAGAGATGAGACGAGGGGAGAGCGAGAAAACTCCTACTACA-TACGAGTTAAATTTCCGTCCAC
TAATAATTCGCCGTCGTGGACTCACCATTTGCTATGAGCCTATGATCCACTCCTACAAAGCCAGCAGCCTTCACAACTTC
TGGCTGGAATTCGTTTTGAACAAAAGCCGATCACGCGCGTACGTGGAAGCAGAGACCAAGCCATGCCAGCCATGTACGCG
CTGACCCCCCGCTGCACCCTCCCGCCG---CACCGCCGCGCGCCGCCGCCGTGCCGGGCGGCCTCGCCGACGCCGGCGGC
ACTGGCCCGCGCCGACCCGGACGAGCTGCGGTCCACGTGGCCGCAGCGCGCGTGGACGCTGGCGGGCTCGGCCGCCGTCC
TCTCCTCGCTGTCCGCGTCCGCCTCCCTCGCCGCCGACTCCGGCTCCTACGCCGAGCCGCTCGCCGCGGCCCTCGCCGCG
TACACCGTCGCCGACCTCGCCACGGGCGTCTACCACTGGCTCGTCGACAACTACGGGGACGCCTCCACGCCGCTCGTCGG
CGCGCAGATCGCCGCCTTCCAGGGCCACCACCGCCACCCCTCCACCATCACGCGCCGGGAGCCCTGCAACAACCTGCACG
CGCTGGCGCGCGCCGTCGCGCTCGCGCTCCCCGCCGTGGAGGCCGCCGCCGCGGCCGCCCACGCGCCGGCCGCCGCGCAC
GCCTTCGCGGGCACCTTCGCGGCGTGCGTGGTGCTGAGCCAGCAGTTCCACGCGTGGGCGCACGAGAAGCGCCGCCGGCT
GCCGCCCGGCGTCGAGGCGCTGCAGGCCGCCGGCGTGCTGGTGTCGCGCGCGCAGCACGCCGCGCACCACCGCCAGCCCT
ACAGCACCAACTACTGCATCCTCAGCGGCATGTGGAACGGGGTGCTGGACAGGCACAAGGTGTTCGAGGCGCTGGAGATG
GTCGTCTTCTTCCGCACCGGCGTCCGCCCGCGCTCATGGGACGAAACGCAGGCCGCCTGGATGGAGGACACCAGCGGCT-
-----CCGTCACCGCCGTCGCTGTTACTGACAGTTCGTAACATACATCGACCATCGTG----------------------
-TACATACATACATACTACGATTCAAAAGGTATACAGAAAGATGAACTGGGATTGAAAGGATTCAAATAT------ACGA
GTTTAGCTAGGTGGAAAAATATAAATATTTAATGTATATTTTAGGTTGTTTTTGAGGATGCAAATCTTGTGGTGTATGCA
AAGAGAGAAGAATTTTTTATAATTGAAAATGTGATGATTTTTTATGGTCTTCAGTCTGTCTACGACAACTTTTGTTACCC
ACAGCTTTCTTGTGGTGCAAATGATTTTGTTCTGGTGGCATGTTCTTCGGATATCCAGTATCTTCTTGTCCACTTGCCAG
AAAAAAGCACATCCAGTTGAGATGATCAACTCTTTGCAACAACATTCGCAAGAAGGCAAGTCACACAGCCACACATGCAT
ATGTCTTAAATCTGCTTATATCTATCGAA---TATGTGTTAATCCATCCGCCAAAAGTGTGACCAACATCGGCTAAAAGG
CTTATTTGAGGCTCAGACCATCTGCTCTTGATTCAAATGGCATGGATGTGAATCACATGTCTGTACAAATTCTGCTTTTT
GGCGTCTCAATCTCGAGCATCGATCCTGAATCAGGCAGATGAAGCAACAGAAACAAGCCGGCACTTCCAAAACTGCGGAG
GGCGAAACCTAGAGGACCGAAAACTGAAGATGAATCCCTCAGCTGGAAGAGCTGCTGACCGTAGCAATCGCTTCGAAGCA
AGGAG---------------------------------------------------------------------------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SS----------------------------------S----------S--S-------SS-------S--SS--------
------S---------------S---SSS-SS---------------S-----S------S-------------SSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS------------S-S---S----
--SS--S-----S-------------S------------SS--------S-S-SSSSS--SSSSSSSS------------
-S-----------SS---S---------------------------S-S-------------------------------
------------S---------------S-----SS-------------------------S---S--------------
---S-------------SS-------S-----------SS--S--S----------------------------------
---------------------------------------------------------S----------------------
--------------------------------S--------------------------------------S--------
------------S-S-------------S----------------------------------------S----------
---------------------------S-------------------------S--------------------------
---------------------------SSS--------------------------------------------------
------------------------------------------------------------------------------S-
----------S---------------------------------------------------------------------
-----------------------------------------------------------------------S--------
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------------------------------------------S------S--S---------------------------
-----------S-----------------------------------------S--------------S-----------
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--------------------------------S--S--------------------------------------------
--SSS-----------S-------------------------------------S----S-SSSSSSS-SSSSSSSSSSS
S-----SS-------------------------S-----------S-----------------S------SSSSSS-S--
S-S---S----S-------SSSS--------------------------------------------------------S
-------S---------S---S----------------------------------------------------------
------------------S--------S----------------------------------S-----------------
-----------S----------------------------------S---S-----------------------------
---------------------------------------------------------S----------------------
------------------------S-------------------------------------SS-S-SSS-S--------
----S-----------------------S-----------------------------S-S-----------------S-
-SS-S-S----------S---SS--------------S-----------SS-----------S----S------S-----
-----SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSS
>forward_238
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----------------------------------------------------------GCGTGTGCTAAAGGCTCAAC--
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>reverse_1954
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---------------------------------GCAGAAGGATGAGCTGGGAT---------------------------
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