Multiple sequence alignment - TraesCS6A01G105700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G105700 chr6A 100.000 2524 0 0 1 2524 73979175 73981698 0 4662
1 TraesCS6A01G105700 chr6B 92.524 2167 114 25 355 2503 132307755 132309891 0 3061
2 TraesCS6A01G105700 chr6D 94.961 635 26 2 1869 2503 58689365 58689993 0 990


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G105700 chr6A 73979175 73981698 2523 False 4662 4662 100.000 1 2524 1 chr6A.!!$F1 2523
1 TraesCS6A01G105700 chr6B 132307755 132309891 2136 False 3061 3061 92.524 355 2503 1 chr6B.!!$F1 2148
2 TraesCS6A01G105700 chr6D 58689365 58689993 628 False 990 990 94.961 1869 2503 1 chr6D.!!$F1 634

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
654 656 0.25363 TCCAGGTCCTTTGCCCCTAT 60.254 55.0 0.0 0.0 0.0 2.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1539 1544 0.401105 ATCCCCTCCCCAGTCATGAG 60.401 60.0 0.0 0.0 0.0 2.9 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 8.964476 AAACATCTTATATGTAGGAACAGTGG 57.036 34.615 0.00 0.00 39.49 4.00
29 30 7.067496 ACATCTTATATGTAGGAACAGTGGG 57.933 40.000 0.00 0.00 39.49 4.61
30 31 6.844388 ACATCTTATATGTAGGAACAGTGGGA 59.156 38.462 0.00 0.00 39.49 4.37
31 32 6.978674 TCTTATATGTAGGAACAGTGGGAG 57.021 41.667 0.00 0.00 39.49 4.30
32 33 6.441222 TCTTATATGTAGGAACAGTGGGAGT 58.559 40.000 0.00 0.00 39.49 3.85
33 34 7.589081 TCTTATATGTAGGAACAGTGGGAGTA 58.411 38.462 0.00 0.00 39.49 2.59
34 35 7.504911 TCTTATATGTAGGAACAGTGGGAGTAC 59.495 40.741 0.00 0.00 39.49 2.73
35 36 3.247948 TGTAGGAACAGTGGGAGTACA 57.752 47.619 0.00 0.00 0.00 2.90
36 37 3.786553 TGTAGGAACAGTGGGAGTACAT 58.213 45.455 0.00 0.00 0.00 2.29
37 38 3.513912 TGTAGGAACAGTGGGAGTACATG 59.486 47.826 0.00 0.00 0.00 3.21
38 39 2.621070 AGGAACAGTGGGAGTACATGT 58.379 47.619 2.69 2.69 0.00 3.21
39 40 2.303022 AGGAACAGTGGGAGTACATGTG 59.697 50.000 9.11 0.00 0.00 3.21
40 41 2.038557 GGAACAGTGGGAGTACATGTGT 59.961 50.000 9.11 0.00 0.00 3.72
41 42 3.259876 GGAACAGTGGGAGTACATGTGTA 59.740 47.826 9.11 0.00 0.00 2.90
42 43 4.262721 GGAACAGTGGGAGTACATGTGTAA 60.263 45.833 9.11 0.00 31.52 2.41
43 44 5.488341 GAACAGTGGGAGTACATGTGTAAT 58.512 41.667 9.11 0.00 31.52 1.89
44 45 5.499004 ACAGTGGGAGTACATGTGTAATT 57.501 39.130 9.11 0.00 31.52 1.40
45 46 5.876357 ACAGTGGGAGTACATGTGTAATTT 58.124 37.500 9.11 0.00 31.52 1.82
46 47 6.303839 ACAGTGGGAGTACATGTGTAATTTT 58.696 36.000 9.11 0.00 31.52 1.82
47 48 6.206634 ACAGTGGGAGTACATGTGTAATTTTG 59.793 38.462 9.11 1.17 31.52 2.44
48 49 6.206634 CAGTGGGAGTACATGTGTAATTTTGT 59.793 38.462 9.11 0.00 31.52 2.83
49 50 7.389330 CAGTGGGAGTACATGTGTAATTTTGTA 59.611 37.037 9.11 0.00 31.52 2.41
50 51 8.107095 AGTGGGAGTACATGTGTAATTTTGTAT 58.893 33.333 9.11 0.00 31.52 2.29
51 52 8.736244 GTGGGAGTACATGTGTAATTTTGTATT 58.264 33.333 9.11 0.00 31.52 1.89
52 53 8.735315 TGGGAGTACATGTGTAATTTTGTATTG 58.265 33.333 9.11 0.00 31.52 1.90
53 54 7.700656 GGGAGTACATGTGTAATTTTGTATTGC 59.299 37.037 9.11 0.00 31.52 3.56
54 55 8.458843 GGAGTACATGTGTAATTTTGTATTGCT 58.541 33.333 9.11 0.00 31.52 3.91
55 56 9.840427 GAGTACATGTGTAATTTTGTATTGCTT 57.160 29.630 9.11 0.00 31.52 3.91
56 57 9.624697 AGTACATGTGTAATTTTGTATTGCTTG 57.375 29.630 9.11 0.00 31.52 4.01
57 58 7.887996 ACATGTGTAATTTTGTATTGCTTGG 57.112 32.000 0.00 0.00 0.00 3.61
58 59 6.368516 ACATGTGTAATTTTGTATTGCTTGGC 59.631 34.615 0.00 0.00 0.00 4.52
59 60 5.847304 TGTGTAATTTTGTATTGCTTGGCA 58.153 33.333 0.00 0.00 36.47 4.92
60 61 6.462500 TGTGTAATTTTGTATTGCTTGGCAT 58.538 32.000 0.00 0.00 38.76 4.40
61 62 6.933521 TGTGTAATTTTGTATTGCTTGGCATT 59.066 30.769 0.00 0.00 38.76 3.56
62 63 7.095313 TGTGTAATTTTGTATTGCTTGGCATTG 60.095 33.333 0.00 0.00 38.76 2.82
63 64 4.950434 ATTTTGTATTGCTTGGCATTGC 57.050 36.364 0.00 0.00 38.76 3.56
64 65 1.993542 TTGTATTGCTTGGCATTGCG 58.006 45.000 1.91 0.00 38.76 4.85
65 66 0.887247 TGTATTGCTTGGCATTGCGT 59.113 45.000 1.91 3.26 38.76 5.24
66 67 1.271934 TGTATTGCTTGGCATTGCGTT 59.728 42.857 1.91 2.00 38.76 4.84
67 68 1.655099 GTATTGCTTGGCATTGCGTTG 59.345 47.619 1.91 0.00 38.76 4.10
68 69 0.317799 ATTGCTTGGCATTGCGTTGA 59.682 45.000 1.91 0.00 38.76 3.18
69 70 0.317799 TTGCTTGGCATTGCGTTGAT 59.682 45.000 1.91 0.00 38.76 2.57
70 71 0.317799 TGCTTGGCATTGCGTTGATT 59.682 45.000 1.91 0.00 31.71 2.57
71 72 1.543358 TGCTTGGCATTGCGTTGATTA 59.457 42.857 1.91 0.00 31.71 1.75
72 73 1.919918 GCTTGGCATTGCGTTGATTAC 59.080 47.619 1.91 0.00 0.00 1.89
73 74 2.415893 GCTTGGCATTGCGTTGATTACT 60.416 45.455 1.91 0.00 0.00 2.24
74 75 3.181501 GCTTGGCATTGCGTTGATTACTA 60.182 43.478 1.91 0.00 0.00 1.82
75 76 4.498009 GCTTGGCATTGCGTTGATTACTAT 60.498 41.667 1.91 0.00 0.00 2.12
76 77 5.574891 TTGGCATTGCGTTGATTACTATT 57.425 34.783 1.91 0.00 0.00 1.73
77 78 5.574891 TGGCATTGCGTTGATTACTATTT 57.425 34.783 1.91 0.00 0.00 1.40
78 79 5.577835 TGGCATTGCGTTGATTACTATTTC 58.422 37.500 1.91 0.00 0.00 2.17
79 80 5.356751 TGGCATTGCGTTGATTACTATTTCT 59.643 36.000 1.91 0.00 0.00 2.52
80 81 6.127758 TGGCATTGCGTTGATTACTATTTCTT 60.128 34.615 1.91 0.00 0.00 2.52
81 82 6.414987 GGCATTGCGTTGATTACTATTTCTTC 59.585 38.462 1.91 0.00 0.00 2.87
82 83 7.189512 GCATTGCGTTGATTACTATTTCTTCT 58.810 34.615 0.00 0.00 0.00 2.85
83 84 7.698130 GCATTGCGTTGATTACTATTTCTTCTT 59.302 33.333 0.00 0.00 0.00 2.52
84 85 9.214953 CATTGCGTTGATTACTATTTCTTCTTC 57.785 33.333 0.00 0.00 0.00 2.87
85 86 6.989437 TGCGTTGATTACTATTTCTTCTTCG 58.011 36.000 0.00 0.00 0.00 3.79
86 87 6.809689 TGCGTTGATTACTATTTCTTCTTCGA 59.190 34.615 0.00 0.00 0.00 3.71
87 88 7.491372 TGCGTTGATTACTATTTCTTCTTCGAT 59.509 33.333 0.00 0.00 0.00 3.59
88 89 8.328864 GCGTTGATTACTATTTCTTCTTCGATT 58.671 33.333 0.00 0.00 0.00 3.34
128 129 2.667418 GCTCTGCAGCCTCCTCAA 59.333 61.111 9.47 0.00 40.14 3.02
129 130 1.002868 GCTCTGCAGCCTCCTCAAA 60.003 57.895 9.47 0.00 40.14 2.69
130 131 0.394080 GCTCTGCAGCCTCCTCAAAT 60.394 55.000 9.47 0.00 40.14 2.32
131 132 1.954258 GCTCTGCAGCCTCCTCAAATT 60.954 52.381 9.47 0.00 40.14 1.82
132 133 2.444421 CTCTGCAGCCTCCTCAAATTT 58.556 47.619 9.47 0.00 0.00 1.82
133 134 2.824341 CTCTGCAGCCTCCTCAAATTTT 59.176 45.455 9.47 0.00 0.00 1.82
134 135 3.233507 TCTGCAGCCTCCTCAAATTTTT 58.766 40.909 9.47 0.00 0.00 1.94
154 155 5.818136 TTTTTCATTCCTAGCTTCGGATG 57.182 39.130 5.39 0.62 0.00 3.51
155 156 4.753516 TTTCATTCCTAGCTTCGGATGA 57.246 40.909 5.39 2.92 0.00 2.92
156 157 4.753516 TTCATTCCTAGCTTCGGATGAA 57.246 40.909 10.83 10.83 31.65 2.57
180 181 8.797266 AAGTATTCGAAAAATTCCTTCACAAC 57.203 30.769 0.00 0.00 0.00 3.32
181 182 7.368059 AGTATTCGAAAAATTCCTTCACAACC 58.632 34.615 0.00 0.00 0.00 3.77
182 183 5.845391 TTCGAAAAATTCCTTCACAACCT 57.155 34.783 0.00 0.00 0.00 3.50
183 184 5.432885 TCGAAAAATTCCTTCACAACCTC 57.567 39.130 0.00 0.00 0.00 3.85
184 185 4.277423 TCGAAAAATTCCTTCACAACCTCC 59.723 41.667 0.00 0.00 0.00 4.30
185 186 4.278419 CGAAAAATTCCTTCACAACCTCCT 59.722 41.667 2.27 0.00 0.00 3.69
186 187 5.562890 CGAAAAATTCCTTCACAACCTCCTC 60.563 44.000 2.27 0.00 0.00 3.71
187 188 4.453480 AAATTCCTTCACAACCTCCTCA 57.547 40.909 0.00 0.00 0.00 3.86
188 189 4.664688 AATTCCTTCACAACCTCCTCAT 57.335 40.909 0.00 0.00 0.00 2.90
189 190 3.703001 TTCCTTCACAACCTCCTCATC 57.297 47.619 0.00 0.00 0.00 2.92
190 191 2.619931 TCCTTCACAACCTCCTCATCA 58.380 47.619 0.00 0.00 0.00 3.07
191 192 2.303022 TCCTTCACAACCTCCTCATCAC 59.697 50.000 0.00 0.00 0.00 3.06
192 193 2.616510 CCTTCACAACCTCCTCATCACC 60.617 54.545 0.00 0.00 0.00 4.02
193 194 0.984230 TCACAACCTCCTCATCACCC 59.016 55.000 0.00 0.00 0.00 4.61
194 195 0.987294 CACAACCTCCTCATCACCCT 59.013 55.000 0.00 0.00 0.00 4.34
195 196 0.987294 ACAACCTCCTCATCACCCTG 59.013 55.000 0.00 0.00 0.00 4.45
196 197 0.987294 CAACCTCCTCATCACCCTGT 59.013 55.000 0.00 0.00 0.00 4.00
197 198 1.352352 CAACCTCCTCATCACCCTGTT 59.648 52.381 0.00 0.00 0.00 3.16
198 199 1.280457 ACCTCCTCATCACCCTGTTC 58.720 55.000 0.00 0.00 0.00 3.18
199 200 1.203364 ACCTCCTCATCACCCTGTTCT 60.203 52.381 0.00 0.00 0.00 3.01
200 201 1.209019 CCTCCTCATCACCCTGTTCTG 59.791 57.143 0.00 0.00 0.00 3.02
201 202 0.615331 TCCTCATCACCCTGTTCTGC 59.385 55.000 0.00 0.00 0.00 4.26
202 203 0.325933 CCTCATCACCCTGTTCTGCA 59.674 55.000 0.00 0.00 0.00 4.41
203 204 1.064906 CCTCATCACCCTGTTCTGCAT 60.065 52.381 0.00 0.00 0.00 3.96
204 205 2.619849 CCTCATCACCCTGTTCTGCATT 60.620 50.000 0.00 0.00 0.00 3.56
205 206 2.422479 CTCATCACCCTGTTCTGCATTG 59.578 50.000 0.00 0.00 0.00 2.82
206 207 2.040145 TCATCACCCTGTTCTGCATTGA 59.960 45.455 0.00 0.00 0.00 2.57
207 208 1.896220 TCACCCTGTTCTGCATTGAC 58.104 50.000 0.00 0.00 0.00 3.18
208 209 1.421268 TCACCCTGTTCTGCATTGACT 59.579 47.619 0.00 0.00 0.00 3.41
209 210 1.808945 CACCCTGTTCTGCATTGACTC 59.191 52.381 0.00 0.00 0.00 3.36
210 211 1.701847 ACCCTGTTCTGCATTGACTCT 59.298 47.619 0.00 0.00 0.00 3.24
211 212 2.289945 ACCCTGTTCTGCATTGACTCTC 60.290 50.000 0.00 0.00 0.00 3.20
212 213 2.027377 CCCTGTTCTGCATTGACTCTCT 60.027 50.000 0.00 0.00 0.00 3.10
213 214 3.001414 CCTGTTCTGCATTGACTCTCTG 58.999 50.000 0.00 0.00 0.00 3.35
214 215 2.415857 CTGTTCTGCATTGACTCTCTGC 59.584 50.000 0.00 0.00 36.45 4.26
215 216 2.038164 TGTTCTGCATTGACTCTCTGCT 59.962 45.455 0.00 0.00 36.84 4.24
216 217 3.072944 GTTCTGCATTGACTCTCTGCTT 58.927 45.455 0.00 0.00 36.84 3.91
217 218 2.969990 TCTGCATTGACTCTCTGCTTC 58.030 47.619 0.00 0.00 36.84 3.86
218 219 2.301009 TCTGCATTGACTCTCTGCTTCA 59.699 45.455 0.00 0.00 36.84 3.02
219 220 3.055312 TCTGCATTGACTCTCTGCTTCAT 60.055 43.478 0.00 0.00 36.84 2.57
220 221 3.007635 TGCATTGACTCTCTGCTTCATG 58.992 45.455 0.00 0.00 36.84 3.07
221 222 2.355132 GCATTGACTCTCTGCTTCATGG 59.645 50.000 0.00 0.00 33.15 3.66
222 223 3.870274 CATTGACTCTCTGCTTCATGGA 58.130 45.455 0.00 0.00 0.00 3.41
223 224 3.325293 TTGACTCTCTGCTTCATGGAC 57.675 47.619 0.00 0.00 0.00 4.02
224 225 1.203287 TGACTCTCTGCTTCATGGACG 59.797 52.381 0.00 0.00 0.00 4.79
225 226 1.474478 GACTCTCTGCTTCATGGACGA 59.526 52.381 0.00 0.00 0.00 4.20
226 227 2.100584 GACTCTCTGCTTCATGGACGAT 59.899 50.000 0.00 0.00 0.00 3.73
227 228 3.291584 ACTCTCTGCTTCATGGACGATA 58.708 45.455 0.00 0.00 0.00 2.92
228 229 3.894427 ACTCTCTGCTTCATGGACGATAT 59.106 43.478 0.00 0.00 0.00 1.63
229 230 4.343526 ACTCTCTGCTTCATGGACGATATT 59.656 41.667 0.00 0.00 0.00 1.28
230 231 5.163364 ACTCTCTGCTTCATGGACGATATTT 60.163 40.000 0.00 0.00 0.00 1.40
231 232 5.674525 TCTCTGCTTCATGGACGATATTTT 58.325 37.500 0.00 0.00 0.00 1.82
232 233 5.755375 TCTCTGCTTCATGGACGATATTTTC 59.245 40.000 0.00 0.00 0.00 2.29
233 234 5.674525 TCTGCTTCATGGACGATATTTTCT 58.325 37.500 0.00 0.00 0.00 2.52
234 235 5.755375 TCTGCTTCATGGACGATATTTTCTC 59.245 40.000 0.00 0.00 0.00 2.87
235 236 5.674525 TGCTTCATGGACGATATTTTCTCT 58.325 37.500 0.00 0.00 0.00 3.10
236 237 6.115446 TGCTTCATGGACGATATTTTCTCTT 58.885 36.000 0.00 0.00 0.00 2.85
237 238 6.599244 TGCTTCATGGACGATATTTTCTCTTT 59.401 34.615 0.00 0.00 0.00 2.52
238 239 7.768582 TGCTTCATGGACGATATTTTCTCTTTA 59.231 33.333 0.00 0.00 0.00 1.85
239 240 8.778358 GCTTCATGGACGATATTTTCTCTTTAT 58.222 33.333 0.00 0.00 0.00 1.40
253 254 6.963049 TTCTCTTTATACTTTTCACCGAGC 57.037 37.500 0.00 0.00 0.00 5.03
254 255 6.032956 TCTCTTTATACTTTTCACCGAGCA 57.967 37.500 0.00 0.00 0.00 4.26
255 256 6.100004 TCTCTTTATACTTTTCACCGAGCAG 58.900 40.000 0.00 0.00 0.00 4.24
256 257 5.790593 TCTTTATACTTTTCACCGAGCAGT 58.209 37.500 0.00 0.00 0.00 4.40
257 258 6.228258 TCTTTATACTTTTCACCGAGCAGTT 58.772 36.000 0.00 0.00 0.00 3.16
258 259 6.708949 TCTTTATACTTTTCACCGAGCAGTTT 59.291 34.615 0.00 0.00 0.00 2.66
259 260 6.870971 TTATACTTTTCACCGAGCAGTTTT 57.129 33.333 0.00 0.00 0.00 2.43
260 261 3.420839 ACTTTTCACCGAGCAGTTTTG 57.579 42.857 0.00 0.00 0.00 2.44
261 262 2.099098 ACTTTTCACCGAGCAGTTTTGG 59.901 45.455 0.00 0.00 0.00 3.28
262 263 1.757682 TTTCACCGAGCAGTTTTGGT 58.242 45.000 0.00 0.00 37.84 3.67
263 264 2.623878 TTCACCGAGCAGTTTTGGTA 57.376 45.000 0.00 0.00 34.61 3.25
264 265 2.851263 TCACCGAGCAGTTTTGGTAT 57.149 45.000 0.00 0.00 34.61 2.73
265 266 3.965379 TCACCGAGCAGTTTTGGTATA 57.035 42.857 0.00 0.00 34.61 1.47
266 267 4.274602 TCACCGAGCAGTTTTGGTATAA 57.725 40.909 0.00 0.00 34.61 0.98
267 268 4.250464 TCACCGAGCAGTTTTGGTATAAG 58.750 43.478 0.00 0.00 34.61 1.73
268 269 3.007635 ACCGAGCAGTTTTGGTATAAGC 58.992 45.455 0.00 0.00 34.61 3.09
269 270 3.006940 CCGAGCAGTTTTGGTATAAGCA 58.993 45.455 0.00 0.00 34.61 3.91
270 271 3.181510 CCGAGCAGTTTTGGTATAAGCAC 60.182 47.826 0.00 0.00 34.61 4.40
271 272 3.684788 CGAGCAGTTTTGGTATAAGCACT 59.315 43.478 0.00 0.00 34.61 4.40
272 273 4.154195 CGAGCAGTTTTGGTATAAGCACTT 59.846 41.667 0.00 0.00 34.61 3.16
273 274 5.334879 CGAGCAGTTTTGGTATAAGCACTTT 60.335 40.000 0.00 0.00 34.61 2.66
274 275 5.772521 AGCAGTTTTGGTATAAGCACTTTG 58.227 37.500 0.00 0.00 32.18 2.77
275 276 4.385748 GCAGTTTTGGTATAAGCACTTTGC 59.614 41.667 0.00 0.00 45.46 3.68
276 277 8.132352 AGCAGTTTTGGTATAAGCACTTTGCA 62.132 38.462 0.22 0.00 38.50 4.08
288 289 3.904571 GCACTTTGCACAGATCATTTGA 58.095 40.909 6.92 0.00 44.26 2.69
289 290 4.300803 GCACTTTGCACAGATCATTTGAA 58.699 39.130 6.92 0.00 44.26 2.69
290 291 4.746115 GCACTTTGCACAGATCATTTGAAA 59.254 37.500 6.92 0.00 44.26 2.69
291 292 5.407387 GCACTTTGCACAGATCATTTGAAAT 59.593 36.000 6.92 0.00 44.26 2.17
292 293 6.617741 GCACTTTGCACAGATCATTTGAAATG 60.618 38.462 11.54 11.54 44.26 2.32
293 294 5.407387 ACTTTGCACAGATCATTTGAAATGC 59.593 36.000 12.86 1.94 0.00 3.56
294 295 3.852286 TGCACAGATCATTTGAAATGCC 58.148 40.909 12.86 7.39 0.00 4.40
295 296 3.512329 TGCACAGATCATTTGAAATGCCT 59.488 39.130 12.86 9.37 0.00 4.75
296 297 4.020928 TGCACAGATCATTTGAAATGCCTT 60.021 37.500 12.86 0.82 0.00 4.35
297 298 4.933400 GCACAGATCATTTGAAATGCCTTT 59.067 37.500 12.86 3.60 0.00 3.11
298 299 5.063060 GCACAGATCATTTGAAATGCCTTTC 59.937 40.000 12.86 7.45 41.01 2.62
299 300 6.160684 CACAGATCATTTGAAATGCCTTTCA 58.839 36.000 12.86 12.47 46.92 2.69
330 331 5.466127 TTTTTCCCCTAGCATGTATCCTT 57.534 39.130 0.00 0.00 0.00 3.36
331 332 5.466127 TTTTCCCCTAGCATGTATCCTTT 57.534 39.130 0.00 0.00 0.00 3.11
332 333 5.466127 TTTCCCCTAGCATGTATCCTTTT 57.534 39.130 0.00 0.00 0.00 2.27
333 334 5.466127 TTCCCCTAGCATGTATCCTTTTT 57.534 39.130 0.00 0.00 0.00 1.94
334 335 6.584471 TTCCCCTAGCATGTATCCTTTTTA 57.416 37.500 0.00 0.00 0.00 1.52
335 336 6.584471 TCCCCTAGCATGTATCCTTTTTAA 57.416 37.500 0.00 0.00 0.00 1.52
336 337 6.975949 TCCCCTAGCATGTATCCTTTTTAAA 58.024 36.000 0.00 0.00 0.00 1.52
337 338 7.591821 TCCCCTAGCATGTATCCTTTTTAAAT 58.408 34.615 0.00 0.00 0.00 1.40
338 339 8.729047 TCCCCTAGCATGTATCCTTTTTAAATA 58.271 33.333 0.00 0.00 0.00 1.40
339 340 8.793592 CCCCTAGCATGTATCCTTTTTAAATAC 58.206 37.037 0.00 0.00 0.00 1.89
340 341 9.349713 CCCTAGCATGTATCCTTTTTAAATACA 57.650 33.333 0.00 2.07 39.47 2.29
342 343 9.884465 CTAGCATGTATCCTTTTTAAATACAGC 57.116 33.333 0.00 7.81 38.77 4.40
343 344 8.525290 AGCATGTATCCTTTTTAAATACAGCT 57.475 30.769 12.26 12.26 38.77 4.24
344 345 8.624776 AGCATGTATCCTTTTTAAATACAGCTC 58.375 33.333 12.26 3.86 38.77 4.09
345 346 8.624776 GCATGTATCCTTTTTAAATACAGCTCT 58.375 33.333 0.00 0.00 38.77 4.09
367 368 9.170584 GCTCTAGTTTAACATTTCTTGTCAAAC 57.829 33.333 0.00 0.00 43.93 2.93
373 374 9.313118 GTTTAACATTTCTTGTCAAACCATTCT 57.687 29.630 0.00 0.00 39.59 2.40
397 398 2.805671 TGTGAATTTGCGACCTGTACAG 59.194 45.455 16.34 16.34 0.00 2.74
398 399 1.804151 TGAATTTGCGACCTGTACAGC 59.196 47.619 17.86 7.62 0.00 4.40
410 411 3.181463 ACCTGTACAGCGTTTCCAAGTTA 60.181 43.478 17.86 0.00 0.00 2.24
414 415 0.879090 CAGCGTTTCCAAGTTACCCC 59.121 55.000 0.00 0.00 0.00 4.95
433 434 5.765510 ACCCCATGATTATAAGTTTCAGCA 58.234 37.500 0.00 0.00 0.00 4.41
463 465 8.634475 AACTTTACTTTTCAGCATTCAGTTTC 57.366 30.769 0.00 0.00 0.00 2.78
464 466 6.912591 ACTTTACTTTTCAGCATTCAGTTTCG 59.087 34.615 0.00 0.00 0.00 3.46
475 477 6.474427 CAGCATTCAGTTTCGCAAATAATCAT 59.526 34.615 0.00 0.00 0.00 2.45
516 518 9.722056 GCACATTTTCTTTCTTATATACAGTGG 57.278 33.333 0.00 0.00 0.00 4.00
535 537 6.881602 ACAGTGGGAAACTTCTGATATTCTTC 59.118 38.462 0.00 0.00 36.83 2.87
537 539 7.555554 CAGTGGGAAACTTCTGATATTCTTCAT 59.444 37.037 0.00 0.00 36.83 2.57
543 545 5.862845 ACTTCTGATATTCTTCATCCGCAT 58.137 37.500 0.00 0.00 0.00 4.73
575 577 1.341156 ACCTGCTATGTGGAGCTCCC 61.341 60.000 29.95 20.55 43.27 4.30
583 585 1.682684 GTGGAGCTCCCGGAGAAGA 60.683 63.158 29.95 5.60 37.93 2.87
591 593 1.896465 CTCCCGGAGAAGAACAAGTCT 59.104 52.381 9.01 0.00 38.69 3.24
592 594 1.618837 TCCCGGAGAAGAACAAGTCTG 59.381 52.381 0.73 0.00 36.40 3.51
599 601 1.265365 GAAGAACAAGTCTGGCTGCAC 59.735 52.381 0.50 0.00 36.40 4.57
634 636 4.750598 CAGTAGAGCGTATACTGCAGTCTA 59.249 45.833 25.56 15.77 42.54 2.59
654 656 0.253630 TCCAGGTCCTTTGCCCCTAT 60.254 55.000 0.00 0.00 0.00 2.57
748 750 2.159476 CCATGCTTCACTGGATCAAACG 60.159 50.000 0.00 0.00 34.24 3.60
752 754 2.160417 GCTTCACTGGATCAAACGAAGG 59.840 50.000 13.02 0.81 32.41 3.46
783 785 1.813753 CCTGCACGATGGGTTACCG 60.814 63.158 0.00 0.00 40.75 4.02
789 791 4.821177 GATGGGTTACCGTCGGAC 57.179 61.111 20.51 6.40 42.60 4.79
794 796 1.271871 TGGGTTACCGTCGGACTCTTA 60.272 52.381 20.51 0.00 40.75 2.10
795 797 1.403323 GGGTTACCGTCGGACTCTTAG 59.597 57.143 20.51 0.00 0.00 2.18
798 800 3.006247 GTTACCGTCGGACTCTTAGACT 58.994 50.000 20.51 0.00 33.10 3.24
799 801 2.197283 ACCGTCGGACTCTTAGACTT 57.803 50.000 20.51 0.00 33.10 3.01
823 825 8.818141 TTTTGTTATCCAAAATGTATTTCGCA 57.182 26.923 0.00 0.00 45.68 5.10
845 847 9.001542 TCGCATCAATATCAATATCAACAATCA 57.998 29.630 0.00 0.00 0.00 2.57
872 877 6.413052 AGAGCAAGAAGAAGCATGATAAGAA 58.587 36.000 0.00 0.00 0.00 2.52
879 884 7.047271 AGAAGAAGCATGATAAGAAGAGTTCC 58.953 38.462 0.00 0.00 0.00 3.62
881 886 6.112058 AGAAGCATGATAAGAAGAGTTCCAC 58.888 40.000 0.00 0.00 0.00 4.02
901 906 4.696877 CCACTTGTGATAATCAGTGCTCAA 59.303 41.667 1.89 0.00 0.00 3.02
915 920 4.391830 CAGTGCTCAACGGTAATTGTGTAT 59.608 41.667 0.00 0.00 0.00 2.29
917 922 4.630069 GTGCTCAACGGTAATTGTGTATCT 59.370 41.667 0.00 0.00 0.00 1.98
919 924 6.311935 GTGCTCAACGGTAATTGTGTATCTAA 59.688 38.462 0.00 0.00 0.00 2.10
984 989 2.975851 GACGCTTGTTTCTCAAATGCAG 59.024 45.455 0.00 0.00 35.48 4.41
1075 1080 4.331717 GTGTCAACCGTATCATTAAGGTGG 59.668 45.833 0.00 0.00 38.99 4.61
1127 1132 1.216977 CGGTGTTGTATGAGCGGGA 59.783 57.895 0.00 0.00 0.00 5.14
1140 1145 2.998097 CGGGATGGCCAGAAGGAA 59.002 61.111 13.05 0.00 36.89 3.36
1194 1199 1.792993 CGCTCGGAGGTACAAGTTACG 60.793 57.143 7.20 0.00 0.00 3.18
1218 1223 5.870978 GCTTGCAACAACCATCATATTTCTT 59.129 36.000 0.00 0.00 0.00 2.52
1223 1228 7.037438 GCAACAACCATCATATTTCTTCATGT 58.963 34.615 0.00 0.00 0.00 3.21
1231 1236 6.017211 TCATATTTCTTCATGTGGATGGGT 57.983 37.500 0.00 0.00 0.00 4.51
1255 1260 7.293745 GTGTCACTTTGTGAATGACTTGATAG 58.706 38.462 1.73 0.00 44.49 2.08
1283 1288 9.545611 GACAAATAAATTCATTTTTGGCATGTC 57.454 29.630 0.00 0.00 29.92 3.06
1303 1308 2.768527 TCTAGATCTGTTTGGAGCCAGG 59.231 50.000 5.18 0.00 0.00 4.45
1304 1309 1.661463 AGATCTGTTTGGAGCCAGGA 58.339 50.000 0.00 0.00 0.00 3.86
1358 1363 1.504359 TCTTTAACGGCTGGTTCGTG 58.496 50.000 0.00 0.00 40.96 4.35
1407 1412 3.752704 GCACTTTTGGGCCGTACA 58.247 55.556 0.00 0.00 44.67 2.90
1424 1429 2.681778 AGGGAGGAGACAGGCACG 60.682 66.667 0.00 0.00 0.00 5.34
1490 1495 2.125512 CGTTCGGAAGGCCTCCTG 60.126 66.667 5.23 0.00 42.85 3.86
1539 1544 2.829120 GGCTAGGTATGGACATCTCCTC 59.171 54.545 10.69 1.64 37.48 3.71
1543 1548 4.484026 AGGTATGGACATCTCCTCTCAT 57.516 45.455 4.01 0.00 37.48 2.90
1596 1601 7.223582 CGGGATGCTATGTAATGCTTAATCTAG 59.776 40.741 0.00 0.00 0.00 2.43
1603 1608 9.862371 CTATGTAATGCTTAATCTAGGTAGGTG 57.138 37.037 0.00 0.00 0.00 4.00
1659 1664 1.935873 TGCTTCTGCTGTATCGCATTC 59.064 47.619 0.00 0.00 39.52 2.67
1689 1694 3.370103 GGTTGATGAAGGAACATCCCGTA 60.370 47.826 0.00 0.00 43.96 4.02
1702 1707 3.898123 ACATCCCGTAGAGTGAATGCTAT 59.102 43.478 0.00 0.00 0.00 2.97
1748 1753 3.244422 TGGTGCTCGTTTCCTAGTTTGAT 60.244 43.478 0.00 0.00 0.00 2.57
1755 1760 4.216902 TCGTTTCCTAGTTTGATCGAGTGA 59.783 41.667 0.00 0.00 0.00 3.41
1761 1766 7.165460 TCCTAGTTTGATCGAGTGAATGTAA 57.835 36.000 0.00 0.00 0.00 2.41
1763 1768 7.706607 TCCTAGTTTGATCGAGTGAATGTAATG 59.293 37.037 0.00 0.00 0.00 1.90
1764 1769 7.706607 CCTAGTTTGATCGAGTGAATGTAATGA 59.293 37.037 0.00 0.00 0.00 2.57
1765 1770 7.295952 AGTTTGATCGAGTGAATGTAATGAC 57.704 36.000 0.00 0.00 0.00 3.06
1766 1771 7.099764 AGTTTGATCGAGTGAATGTAATGACT 58.900 34.615 0.00 0.00 0.00 3.41
1767 1772 8.251026 AGTTTGATCGAGTGAATGTAATGACTA 58.749 33.333 0.00 0.00 0.00 2.59
1768 1773 8.869897 GTTTGATCGAGTGAATGTAATGACTAA 58.130 33.333 0.00 0.00 0.00 2.24
1769 1774 9.599866 TTTGATCGAGTGAATGTAATGACTAAT 57.400 29.630 0.00 0.00 0.00 1.73
1770 1775 8.579682 TGATCGAGTGAATGTAATGACTAATG 57.420 34.615 0.00 0.00 0.00 1.90
1771 1776 8.413229 TGATCGAGTGAATGTAATGACTAATGA 58.587 33.333 0.00 0.00 0.00 2.57
1772 1777 8.809159 ATCGAGTGAATGTAATGACTAATGAG 57.191 34.615 0.00 0.00 0.00 2.90
1773 1778 7.203218 TCGAGTGAATGTAATGACTAATGAGG 58.797 38.462 0.00 0.00 0.00 3.86
1774 1779 7.068226 TCGAGTGAATGTAATGACTAATGAGGA 59.932 37.037 0.00 0.00 0.00 3.71
1775 1780 7.168302 CGAGTGAATGTAATGACTAATGAGGAC 59.832 40.741 0.00 0.00 0.00 3.85
1776 1781 7.851228 AGTGAATGTAATGACTAATGAGGACA 58.149 34.615 0.00 0.00 0.00 4.02
1777 1782 7.984050 AGTGAATGTAATGACTAATGAGGACAG 59.016 37.037 0.00 0.00 0.00 3.51
1778 1783 7.225538 GTGAATGTAATGACTAATGAGGACAGG 59.774 40.741 0.00 0.00 0.00 4.00
1779 1784 6.814954 ATGTAATGACTAATGAGGACAGGT 57.185 37.500 0.00 0.00 0.00 4.00
1780 1785 7.914427 ATGTAATGACTAATGAGGACAGGTA 57.086 36.000 0.00 0.00 0.00 3.08
1815 1820 4.695455 TGCTACTGTTAAAGCATGAACCTC 59.305 41.667 0.00 0.00 43.56 3.85
1821 1826 4.213270 TGTTAAAGCATGAACCTCGAACAG 59.787 41.667 0.00 0.00 0.00 3.16
1857 1862 7.174772 TGCTGAATTGCTGATGTTCTAAACTAA 59.825 33.333 0.00 0.00 0.00 2.24
1965 1970 4.100189 AGCTCCACACATTCAGTAGGATAC 59.900 45.833 0.00 0.00 43.47 2.24
1979 1985 5.429957 GTAGGATACGAATACGACCACTT 57.570 43.478 0.00 0.00 46.39 3.16
1980 1986 4.303086 AGGATACGAATACGACCACTTG 57.697 45.455 0.00 0.00 46.39 3.16
1981 1987 2.793232 GGATACGAATACGACCACTTGC 59.207 50.000 0.00 0.00 42.66 4.01
1982 1988 3.441163 GATACGAATACGACCACTTGCA 58.559 45.455 0.00 0.00 42.66 4.08
2020 2026 2.924105 GCAACAGGCCAGGTTCAGC 61.924 63.158 5.01 6.20 36.11 4.26
2053 2059 4.435121 CGGTGTTTGATCTAAAAGTACGCC 60.435 45.833 0.00 0.00 0.00 5.68
2307 2320 1.138661 CTCTGGAGGTGGCAGATCTTC 59.861 57.143 0.00 0.00 0.00 2.87
2506 2522 4.047059 CGAGTACGTGCCGGTGGT 62.047 66.667 1.90 0.83 34.56 4.16
2507 2523 2.126189 GAGTACGTGCCGGTGGTC 60.126 66.667 1.90 0.00 0.00 4.02
2508 2524 3.958822 GAGTACGTGCCGGTGGTCG 62.959 68.421 1.90 5.75 38.88 4.79
2509 2525 4.347453 GTACGTGCCGGTGGTCGT 62.347 66.667 1.90 11.54 38.37 4.34
2510 2526 4.041917 TACGTGCCGGTGGTCGTC 62.042 66.667 15.55 0.00 36.94 4.20
2516 2532 4.203076 CCGGTGGTCGTCGGGATC 62.203 72.222 0.00 0.00 42.32 3.36
2517 2533 4.547905 CGGTGGTCGTCGGGATCG 62.548 72.222 0.00 0.00 37.82 3.69
2518 2534 3.136123 GGTGGTCGTCGGGATCGA 61.136 66.667 0.00 0.00 43.86 3.59
2519 2535 2.408022 GTGGTCGTCGGGATCGAG 59.592 66.667 0.00 0.00 46.91 4.04
2520 2536 2.110967 GTGGTCGTCGGGATCGAGA 61.111 63.158 0.00 0.00 46.91 4.04
2521 2537 1.818363 TGGTCGTCGGGATCGAGAG 60.818 63.158 0.00 0.00 46.91 3.20
2522 2538 2.544698 GGTCGTCGGGATCGAGAGG 61.545 68.421 0.00 3.33 46.91 3.69
2523 2539 2.900838 TCGTCGGGATCGAGAGGC 60.901 66.667 0.00 0.00 46.91 4.70
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 9.396022 CCACTGTTCCTACATATAAGATGTTTT 57.604 33.333 0.00 0.00 32.86 2.43
3 4 7.993183 CCCACTGTTCCTACATATAAGATGTTT 59.007 37.037 0.00 0.00 32.86 2.83
4 5 7.347222 TCCCACTGTTCCTACATATAAGATGTT 59.653 37.037 0.00 0.00 32.86 2.71
5 6 6.844388 TCCCACTGTTCCTACATATAAGATGT 59.156 38.462 0.00 0.00 32.86 3.06
6 7 7.015682 ACTCCCACTGTTCCTACATATAAGATG 59.984 40.741 0.00 0.00 32.86 2.90
7 8 7.076446 ACTCCCACTGTTCCTACATATAAGAT 58.924 38.462 0.00 0.00 32.86 2.40
8 9 6.441222 ACTCCCACTGTTCCTACATATAAGA 58.559 40.000 0.00 0.00 32.86 2.10
9 10 6.732896 ACTCCCACTGTTCCTACATATAAG 57.267 41.667 0.00 0.00 32.86 1.73
10 11 7.127405 TGTACTCCCACTGTTCCTACATATAA 58.873 38.462 0.00 0.00 32.86 0.98
11 12 6.675565 TGTACTCCCACTGTTCCTACATATA 58.324 40.000 0.00 0.00 32.86 0.86
12 13 5.525484 TGTACTCCCACTGTTCCTACATAT 58.475 41.667 0.00 0.00 32.86 1.78
13 14 4.938028 TGTACTCCCACTGTTCCTACATA 58.062 43.478 0.00 0.00 32.86 2.29
14 15 3.786553 TGTACTCCCACTGTTCCTACAT 58.213 45.455 0.00 0.00 32.86 2.29
15 16 3.247948 TGTACTCCCACTGTTCCTACA 57.752 47.619 0.00 0.00 0.00 2.74
16 17 3.514309 ACATGTACTCCCACTGTTCCTAC 59.486 47.826 0.00 0.00 0.00 3.18
17 18 3.513912 CACATGTACTCCCACTGTTCCTA 59.486 47.826 0.00 0.00 0.00 2.94
18 19 2.303022 CACATGTACTCCCACTGTTCCT 59.697 50.000 0.00 0.00 0.00 3.36
19 20 2.038557 ACACATGTACTCCCACTGTTCC 59.961 50.000 0.00 0.00 0.00 3.62
20 21 3.402628 ACACATGTACTCCCACTGTTC 57.597 47.619 0.00 0.00 0.00 3.18
21 22 4.967084 TTACACATGTACTCCCACTGTT 57.033 40.909 0.00 0.00 0.00 3.16
22 23 5.499004 AATTACACATGTACTCCCACTGT 57.501 39.130 0.00 0.00 0.00 3.55
23 24 6.206634 ACAAAATTACACATGTACTCCCACTG 59.793 38.462 0.00 0.00 0.00 3.66
24 25 6.303839 ACAAAATTACACATGTACTCCCACT 58.696 36.000 0.00 0.00 0.00 4.00
25 26 6.569179 ACAAAATTACACATGTACTCCCAC 57.431 37.500 0.00 0.00 0.00 4.61
26 27 8.735315 CAATACAAAATTACACATGTACTCCCA 58.265 33.333 0.00 0.00 31.65 4.37
27 28 7.700656 GCAATACAAAATTACACATGTACTCCC 59.299 37.037 0.00 0.00 31.65 4.30
28 29 8.458843 AGCAATACAAAATTACACATGTACTCC 58.541 33.333 0.00 0.00 31.65 3.85
29 30 9.840427 AAGCAATACAAAATTACACATGTACTC 57.160 29.630 0.00 0.00 31.65 2.59
30 31 9.624697 CAAGCAATACAAAATTACACATGTACT 57.375 29.630 0.00 0.00 31.65 2.73
31 32 8.859156 CCAAGCAATACAAAATTACACATGTAC 58.141 33.333 0.00 0.00 31.65 2.90
32 33 7.543868 GCCAAGCAATACAAAATTACACATGTA 59.456 33.333 0.00 0.00 33.24 2.29
33 34 6.368516 GCCAAGCAATACAAAATTACACATGT 59.631 34.615 0.00 0.00 0.00 3.21
34 35 6.368243 TGCCAAGCAATACAAAATTACACATG 59.632 34.615 0.00 0.00 34.76 3.21
35 36 6.462500 TGCCAAGCAATACAAAATTACACAT 58.538 32.000 0.00 0.00 34.76 3.21
36 37 5.847304 TGCCAAGCAATACAAAATTACACA 58.153 33.333 0.00 0.00 34.76 3.72
37 38 6.966435 ATGCCAAGCAATACAAAATTACAC 57.034 33.333 0.00 0.00 43.62 2.90
38 39 6.128336 GCAATGCCAAGCAATACAAAATTACA 60.128 34.615 0.00 0.00 43.62 2.41
39 40 6.250089 GCAATGCCAAGCAATACAAAATTAC 58.750 36.000 0.00 0.00 43.62 1.89
40 41 5.063186 CGCAATGCCAAGCAATACAAAATTA 59.937 36.000 0.00 0.00 43.62 1.40
41 42 4.142859 CGCAATGCCAAGCAATACAAAATT 60.143 37.500 0.00 0.00 43.62 1.82
42 43 3.371591 CGCAATGCCAAGCAATACAAAAT 59.628 39.130 0.00 0.00 43.62 1.82
43 44 2.735663 CGCAATGCCAAGCAATACAAAA 59.264 40.909 0.00 0.00 43.62 2.44
44 45 2.288702 ACGCAATGCCAAGCAATACAAA 60.289 40.909 0.00 0.00 43.62 2.83
45 46 1.271934 ACGCAATGCCAAGCAATACAA 59.728 42.857 0.00 0.00 43.62 2.41
46 47 0.887247 ACGCAATGCCAAGCAATACA 59.113 45.000 0.00 0.00 43.62 2.29
47 48 1.655099 CAACGCAATGCCAAGCAATAC 59.345 47.619 0.00 0.00 43.62 1.89
48 49 1.543358 TCAACGCAATGCCAAGCAATA 59.457 42.857 0.00 0.00 43.62 1.90
49 50 0.317799 TCAACGCAATGCCAAGCAAT 59.682 45.000 0.00 0.00 43.62 3.56
50 51 0.317799 ATCAACGCAATGCCAAGCAA 59.682 45.000 0.00 0.00 43.62 3.91
51 52 0.317799 AATCAACGCAATGCCAAGCA 59.682 45.000 0.00 0.00 44.86 3.91
52 53 1.919918 GTAATCAACGCAATGCCAAGC 59.080 47.619 0.00 0.00 0.00 4.01
53 54 3.492421 AGTAATCAACGCAATGCCAAG 57.508 42.857 0.00 0.00 0.00 3.61
54 55 5.574891 AATAGTAATCAACGCAATGCCAA 57.425 34.783 0.00 0.00 0.00 4.52
55 56 5.356751 AGAAATAGTAATCAACGCAATGCCA 59.643 36.000 0.00 0.00 0.00 4.92
56 57 5.821204 AGAAATAGTAATCAACGCAATGCC 58.179 37.500 0.00 0.00 0.00 4.40
57 58 7.189512 AGAAGAAATAGTAATCAACGCAATGC 58.810 34.615 0.00 0.00 0.00 3.56
58 59 9.214953 GAAGAAGAAATAGTAATCAACGCAATG 57.785 33.333 0.00 0.00 0.00 2.82
59 60 8.116753 CGAAGAAGAAATAGTAATCAACGCAAT 58.883 33.333 0.00 0.00 0.00 3.56
60 61 7.329962 TCGAAGAAGAAATAGTAATCAACGCAA 59.670 33.333 0.00 0.00 0.00 4.85
61 62 6.809689 TCGAAGAAGAAATAGTAATCAACGCA 59.190 34.615 0.00 0.00 0.00 5.24
62 63 7.218145 TCGAAGAAGAAATAGTAATCAACGC 57.782 36.000 0.00 0.00 0.00 4.84
99 100 3.056607 GGCTGCAGAGCTGGAAATAAAAA 60.057 43.478 20.43 0.00 45.44 1.94
100 101 2.493278 GGCTGCAGAGCTGGAAATAAAA 59.507 45.455 20.43 0.00 45.44 1.52
101 102 2.094675 GGCTGCAGAGCTGGAAATAAA 58.905 47.619 20.43 0.00 45.44 1.40
102 103 1.283029 AGGCTGCAGAGCTGGAAATAA 59.717 47.619 20.43 0.00 45.44 1.40
103 104 0.914644 AGGCTGCAGAGCTGGAAATA 59.085 50.000 20.43 0.00 45.44 1.40
104 105 0.394080 GAGGCTGCAGAGCTGGAAAT 60.394 55.000 20.43 0.00 45.44 2.17
105 106 1.002868 GAGGCTGCAGAGCTGGAAA 60.003 57.895 20.43 0.00 45.44 3.13
106 107 2.667418 GAGGCTGCAGAGCTGGAA 59.333 61.111 20.43 0.00 45.44 3.53
107 108 3.397439 GGAGGCTGCAGAGCTGGA 61.397 66.667 20.43 0.00 45.44 3.86
108 109 3.388703 GAGGAGGCTGCAGAGCTGG 62.389 68.421 20.43 0.00 45.44 4.85
109 110 2.181445 TTGAGGAGGCTGCAGAGCTG 62.181 60.000 20.43 0.00 45.44 4.24
110 111 1.486997 TTTGAGGAGGCTGCAGAGCT 61.487 55.000 20.43 0.00 45.44 4.09
111 112 0.394080 ATTTGAGGAGGCTGCAGAGC 60.394 55.000 20.43 2.97 45.40 4.09
112 113 2.125773 AATTTGAGGAGGCTGCAGAG 57.874 50.000 20.43 0.00 0.00 3.35
113 114 2.592102 AAATTTGAGGAGGCTGCAGA 57.408 45.000 20.43 0.00 0.00 4.26
114 115 3.672767 AAAAATTTGAGGAGGCTGCAG 57.327 42.857 10.11 10.11 0.00 4.41
132 133 5.496556 TCATCCGAAGCTAGGAATGAAAAA 58.503 37.500 13.94 0.00 41.69 1.94
133 134 5.097742 TCATCCGAAGCTAGGAATGAAAA 57.902 39.130 13.94 0.00 41.69 2.29
134 135 4.753516 TCATCCGAAGCTAGGAATGAAA 57.246 40.909 13.94 0.00 41.69 2.69
135 136 4.697514 CTTCATCCGAAGCTAGGAATGAA 58.302 43.478 20.90 20.90 42.17 2.57
136 137 4.327982 CTTCATCCGAAGCTAGGAATGA 57.672 45.455 13.94 13.87 42.17 2.57
147 148 7.335924 AGGAATTTTTCGAATACTTCATCCGAA 59.664 33.333 16.42 0.00 37.45 4.30
148 149 6.821665 AGGAATTTTTCGAATACTTCATCCGA 59.178 34.615 16.42 0.00 0.00 4.55
149 150 7.016361 AGGAATTTTTCGAATACTTCATCCG 57.984 36.000 16.42 0.00 0.00 4.18
150 151 8.458843 TGAAGGAATTTTTCGAATACTTCATCC 58.541 33.333 16.62 10.42 38.39 3.51
151 152 9.278734 GTGAAGGAATTTTTCGAATACTTCATC 57.721 33.333 21.25 16.24 43.11 2.92
152 153 8.792633 TGTGAAGGAATTTTTCGAATACTTCAT 58.207 29.630 21.25 11.99 43.11 2.57
153 154 8.160521 TGTGAAGGAATTTTTCGAATACTTCA 57.839 30.769 16.62 16.62 40.26 3.02
154 155 8.902735 GTTGTGAAGGAATTTTTCGAATACTTC 58.097 33.333 12.59 12.59 35.05 3.01
155 156 7.865889 GGTTGTGAAGGAATTTTTCGAATACTT 59.134 33.333 0.00 0.00 0.00 2.24
156 157 7.230712 AGGTTGTGAAGGAATTTTTCGAATACT 59.769 33.333 0.00 0.00 0.00 2.12
157 158 7.368059 AGGTTGTGAAGGAATTTTTCGAATAC 58.632 34.615 0.00 0.00 0.00 1.89
158 159 7.308951 GGAGGTTGTGAAGGAATTTTTCGAATA 60.309 37.037 0.00 0.00 0.00 1.75
159 160 6.405278 AGGTTGTGAAGGAATTTTTCGAAT 57.595 33.333 0.00 0.00 0.00 3.34
160 161 5.221165 GGAGGTTGTGAAGGAATTTTTCGAA 60.221 40.000 0.00 0.00 0.00 3.71
161 162 4.277423 GGAGGTTGTGAAGGAATTTTTCGA 59.723 41.667 0.00 0.00 0.00 3.71
162 163 4.278419 AGGAGGTTGTGAAGGAATTTTTCG 59.722 41.667 0.00 0.00 0.00 3.46
163 164 5.301805 TGAGGAGGTTGTGAAGGAATTTTTC 59.698 40.000 0.00 0.00 0.00 2.29
164 165 5.208121 TGAGGAGGTTGTGAAGGAATTTTT 58.792 37.500 0.00 0.00 0.00 1.94
165 166 4.803452 TGAGGAGGTTGTGAAGGAATTTT 58.197 39.130 0.00 0.00 0.00 1.82
166 167 4.453480 TGAGGAGGTTGTGAAGGAATTT 57.547 40.909 0.00 0.00 0.00 1.82
167 168 4.043310 TGATGAGGAGGTTGTGAAGGAATT 59.957 41.667 0.00 0.00 0.00 2.17
168 169 3.588842 TGATGAGGAGGTTGTGAAGGAAT 59.411 43.478 0.00 0.00 0.00 3.01
169 170 2.978978 TGATGAGGAGGTTGTGAAGGAA 59.021 45.455 0.00 0.00 0.00 3.36
170 171 2.303022 GTGATGAGGAGGTTGTGAAGGA 59.697 50.000 0.00 0.00 0.00 3.36
171 172 2.616510 GGTGATGAGGAGGTTGTGAAGG 60.617 54.545 0.00 0.00 0.00 3.46
172 173 2.616510 GGGTGATGAGGAGGTTGTGAAG 60.617 54.545 0.00 0.00 0.00 3.02
173 174 1.351017 GGGTGATGAGGAGGTTGTGAA 59.649 52.381 0.00 0.00 0.00 3.18
174 175 0.984230 GGGTGATGAGGAGGTTGTGA 59.016 55.000 0.00 0.00 0.00 3.58
175 176 0.987294 AGGGTGATGAGGAGGTTGTG 59.013 55.000 0.00 0.00 0.00 3.33
176 177 0.987294 CAGGGTGATGAGGAGGTTGT 59.013 55.000 0.00 0.00 0.00 3.32
177 178 0.987294 ACAGGGTGATGAGGAGGTTG 59.013 55.000 0.00 0.00 0.00 3.77
178 179 1.630878 GAACAGGGTGATGAGGAGGTT 59.369 52.381 0.00 0.00 0.00 3.50
179 180 1.203364 AGAACAGGGTGATGAGGAGGT 60.203 52.381 0.00 0.00 0.00 3.85
180 181 1.209019 CAGAACAGGGTGATGAGGAGG 59.791 57.143 0.00 0.00 0.00 4.30
181 182 1.406614 GCAGAACAGGGTGATGAGGAG 60.407 57.143 0.00 0.00 0.00 3.69
182 183 0.615331 GCAGAACAGGGTGATGAGGA 59.385 55.000 0.00 0.00 0.00 3.71
183 184 0.325933 TGCAGAACAGGGTGATGAGG 59.674 55.000 0.00 0.00 0.00 3.86
184 185 2.414994 ATGCAGAACAGGGTGATGAG 57.585 50.000 0.00 0.00 0.00 2.90
185 186 2.040145 TCAATGCAGAACAGGGTGATGA 59.960 45.455 0.00 0.00 0.00 2.92
186 187 2.163010 GTCAATGCAGAACAGGGTGATG 59.837 50.000 0.00 0.00 0.00 3.07
187 188 2.040813 AGTCAATGCAGAACAGGGTGAT 59.959 45.455 0.00 0.00 0.00 3.06
188 189 1.421268 AGTCAATGCAGAACAGGGTGA 59.579 47.619 0.00 0.00 0.00 4.02
189 190 1.808945 GAGTCAATGCAGAACAGGGTG 59.191 52.381 0.00 0.00 0.00 4.61
190 191 1.701847 AGAGTCAATGCAGAACAGGGT 59.298 47.619 0.00 0.00 0.00 4.34
191 192 2.027377 AGAGAGTCAATGCAGAACAGGG 60.027 50.000 0.00 0.00 0.00 4.45
192 193 3.001414 CAGAGAGTCAATGCAGAACAGG 58.999 50.000 0.00 0.00 0.00 4.00
193 194 2.415857 GCAGAGAGTCAATGCAGAACAG 59.584 50.000 13.09 0.00 39.75 3.16
194 195 2.038164 AGCAGAGAGTCAATGCAGAACA 59.962 45.455 18.41 0.00 42.45 3.18
195 196 2.697654 AGCAGAGAGTCAATGCAGAAC 58.302 47.619 18.41 0.00 42.45 3.01
196 197 3.244318 TGAAGCAGAGAGTCAATGCAGAA 60.244 43.478 18.41 4.03 42.45 3.02
197 198 2.301009 TGAAGCAGAGAGTCAATGCAGA 59.699 45.455 18.41 2.89 42.45 4.26
198 199 2.696506 TGAAGCAGAGAGTCAATGCAG 58.303 47.619 18.41 0.00 42.45 4.41
199 200 2.845363 TGAAGCAGAGAGTCAATGCA 57.155 45.000 18.41 0.00 42.45 3.96
200 201 2.355132 CCATGAAGCAGAGAGTCAATGC 59.645 50.000 10.69 10.69 40.29 3.56
201 202 3.622163 GTCCATGAAGCAGAGAGTCAATG 59.378 47.826 0.00 0.00 0.00 2.82
202 203 3.678252 CGTCCATGAAGCAGAGAGTCAAT 60.678 47.826 0.00 0.00 0.00 2.57
203 204 2.353109 CGTCCATGAAGCAGAGAGTCAA 60.353 50.000 0.00 0.00 0.00 3.18
204 205 1.203287 CGTCCATGAAGCAGAGAGTCA 59.797 52.381 0.00 0.00 0.00 3.41
205 206 1.474478 TCGTCCATGAAGCAGAGAGTC 59.526 52.381 0.00 0.00 0.00 3.36
206 207 1.550327 TCGTCCATGAAGCAGAGAGT 58.450 50.000 0.00 0.00 0.00 3.24
207 208 2.886862 ATCGTCCATGAAGCAGAGAG 57.113 50.000 0.00 0.00 0.00 3.20
208 209 4.944619 AATATCGTCCATGAAGCAGAGA 57.055 40.909 0.00 0.00 0.00 3.10
209 210 5.757320 AGAAAATATCGTCCATGAAGCAGAG 59.243 40.000 0.00 0.00 0.00 3.35
210 211 5.674525 AGAAAATATCGTCCATGAAGCAGA 58.325 37.500 0.00 0.00 0.00 4.26
211 212 5.757320 AGAGAAAATATCGTCCATGAAGCAG 59.243 40.000 0.00 0.00 0.00 4.24
212 213 5.674525 AGAGAAAATATCGTCCATGAAGCA 58.325 37.500 0.00 0.00 0.00 3.91
213 214 6.610741 AAGAGAAAATATCGTCCATGAAGC 57.389 37.500 0.00 0.00 0.00 3.86
227 228 8.451748 GCTCGGTGAAAAGTATAAAGAGAAAAT 58.548 33.333 0.00 0.00 0.00 1.82
228 229 7.442969 TGCTCGGTGAAAAGTATAAAGAGAAAA 59.557 33.333 0.00 0.00 0.00 2.29
229 230 6.932400 TGCTCGGTGAAAAGTATAAAGAGAAA 59.068 34.615 0.00 0.00 0.00 2.52
230 231 6.460781 TGCTCGGTGAAAAGTATAAAGAGAA 58.539 36.000 0.00 0.00 0.00 2.87
231 232 6.032956 TGCTCGGTGAAAAGTATAAAGAGA 57.967 37.500 0.00 0.00 0.00 3.10
232 233 5.869888 ACTGCTCGGTGAAAAGTATAAAGAG 59.130 40.000 0.00 0.00 0.00 2.85
233 234 5.790593 ACTGCTCGGTGAAAAGTATAAAGA 58.209 37.500 0.00 0.00 0.00 2.52
234 235 6.481954 AACTGCTCGGTGAAAAGTATAAAG 57.518 37.500 0.00 0.00 0.00 1.85
235 236 6.870971 AAACTGCTCGGTGAAAAGTATAAA 57.129 33.333 0.00 0.00 0.00 1.40
236 237 6.293735 CCAAAACTGCTCGGTGAAAAGTATAA 60.294 38.462 0.00 0.00 0.00 0.98
237 238 5.180492 CCAAAACTGCTCGGTGAAAAGTATA 59.820 40.000 0.00 0.00 0.00 1.47
238 239 4.023193 CCAAAACTGCTCGGTGAAAAGTAT 60.023 41.667 0.00 0.00 0.00 2.12
239 240 3.314080 CCAAAACTGCTCGGTGAAAAGTA 59.686 43.478 0.00 0.00 0.00 2.24
240 241 2.099098 CCAAAACTGCTCGGTGAAAAGT 59.901 45.455 0.00 0.00 0.00 2.66
241 242 2.099098 ACCAAAACTGCTCGGTGAAAAG 59.901 45.455 0.00 0.00 0.00 2.27
242 243 2.096248 ACCAAAACTGCTCGGTGAAAA 58.904 42.857 0.00 0.00 0.00 2.29
243 244 1.757682 ACCAAAACTGCTCGGTGAAA 58.242 45.000 0.00 0.00 0.00 2.69
244 245 2.623878 TACCAAAACTGCTCGGTGAA 57.376 45.000 0.00 0.00 32.81 3.18
245 246 2.851263 ATACCAAAACTGCTCGGTGA 57.149 45.000 0.00 0.00 32.81 4.02
246 247 3.181510 GCTTATACCAAAACTGCTCGGTG 60.182 47.826 0.00 0.00 32.81 4.94
247 248 3.007635 GCTTATACCAAAACTGCTCGGT 58.992 45.455 0.00 0.00 35.46 4.69
248 249 3.006940 TGCTTATACCAAAACTGCTCGG 58.993 45.455 0.00 0.00 0.00 4.63
249 250 3.684788 AGTGCTTATACCAAAACTGCTCG 59.315 43.478 0.00 0.00 0.00 5.03
250 251 5.629079 AAGTGCTTATACCAAAACTGCTC 57.371 39.130 0.00 0.00 0.00 4.26
251 252 5.772521 CAAAGTGCTTATACCAAAACTGCT 58.227 37.500 0.00 0.00 0.00 4.24
252 253 4.385748 GCAAAGTGCTTATACCAAAACTGC 59.614 41.667 0.00 0.00 40.96 4.40
253 254 5.402270 GTGCAAAGTGCTTATACCAAAACTG 59.598 40.000 1.43 0.00 45.31 3.16
254 255 5.068460 TGTGCAAAGTGCTTATACCAAAACT 59.932 36.000 1.43 0.00 45.31 2.66
255 256 5.285651 TGTGCAAAGTGCTTATACCAAAAC 58.714 37.500 1.43 0.00 45.31 2.43
256 257 5.300539 TCTGTGCAAAGTGCTTATACCAAAA 59.699 36.000 3.21 0.00 45.31 2.44
257 258 4.824537 TCTGTGCAAAGTGCTTATACCAAA 59.175 37.500 3.21 0.00 45.31 3.28
258 259 4.393834 TCTGTGCAAAGTGCTTATACCAA 58.606 39.130 3.21 0.00 45.31 3.67
259 260 4.014569 TCTGTGCAAAGTGCTTATACCA 57.985 40.909 3.21 0.00 45.31 3.25
260 261 4.635765 TGATCTGTGCAAAGTGCTTATACC 59.364 41.667 3.21 0.00 45.31 2.73
261 262 5.801350 TGATCTGTGCAAAGTGCTTATAC 57.199 39.130 3.21 0.00 45.31 1.47
262 263 7.121020 TCAAATGATCTGTGCAAAGTGCTTATA 59.879 33.333 3.21 0.00 45.31 0.98
263 264 5.909621 AATGATCTGTGCAAAGTGCTTAT 57.090 34.783 3.21 0.00 45.31 1.73
264 265 5.241285 TCAAATGATCTGTGCAAAGTGCTTA 59.759 36.000 3.21 0.00 45.31 3.09
265 266 4.038282 TCAAATGATCTGTGCAAAGTGCTT 59.962 37.500 3.21 0.00 45.31 3.91
266 267 3.570975 TCAAATGATCTGTGCAAAGTGCT 59.429 39.130 3.21 0.00 45.31 4.40
267 268 3.904571 TCAAATGATCTGTGCAAAGTGC 58.095 40.909 3.21 0.00 45.29 4.40
268 269 6.617741 GCATTTCAAATGATCTGTGCAAAGTG 60.618 38.462 14.65 0.00 0.00 3.16
269 270 5.407387 GCATTTCAAATGATCTGTGCAAAGT 59.593 36.000 14.65 0.00 0.00 2.66
270 271 5.163893 GGCATTTCAAATGATCTGTGCAAAG 60.164 40.000 14.65 0.00 33.27 2.77
271 272 4.691685 GGCATTTCAAATGATCTGTGCAAA 59.308 37.500 14.65 0.00 33.27 3.68
272 273 4.020928 AGGCATTTCAAATGATCTGTGCAA 60.021 37.500 14.65 0.00 33.27 4.08
273 274 3.512329 AGGCATTTCAAATGATCTGTGCA 59.488 39.130 14.65 0.00 33.27 4.57
274 275 4.119442 AGGCATTTCAAATGATCTGTGC 57.881 40.909 14.65 0.00 0.00 4.57
275 276 6.642683 GAAAGGCATTTCAAATGATCTGTG 57.357 37.500 18.39 0.00 43.64 3.66
308 309 5.466127 AAGGATACATGCTAGGGGAAAAA 57.534 39.130 0.00 0.00 41.41 1.94
309 310 5.466127 AAAGGATACATGCTAGGGGAAAA 57.534 39.130 0.00 0.00 41.41 2.29
310 311 5.466127 AAAAGGATACATGCTAGGGGAAA 57.534 39.130 0.00 0.00 41.41 3.13
311 312 5.466127 AAAAAGGATACATGCTAGGGGAA 57.534 39.130 0.00 0.00 41.41 3.97
312 313 6.584471 TTAAAAAGGATACATGCTAGGGGA 57.416 37.500 0.00 0.00 41.41 4.81
313 314 7.839680 ATTTAAAAAGGATACATGCTAGGGG 57.160 36.000 0.00 0.00 41.41 4.79
314 315 9.349713 TGTATTTAAAAAGGATACATGCTAGGG 57.650 33.333 0.00 0.00 41.41 3.53
316 317 9.884465 GCTGTATTTAAAAAGGATACATGCTAG 57.116 33.333 0.00 0.00 36.14 3.42
317 318 9.627123 AGCTGTATTTAAAAAGGATACATGCTA 57.373 29.630 14.41 0.00 38.04 3.49
318 319 8.525290 AGCTGTATTTAAAAAGGATACATGCT 57.475 30.769 12.26 12.26 36.14 3.79
319 320 8.624776 AGAGCTGTATTTAAAAAGGATACATGC 58.375 33.333 0.00 2.98 36.14 4.06
336 337 9.726438 ACAAGAAATGTTAAACTAGAGCTGTAT 57.274 29.630 0.00 0.00 40.06 2.29
337 338 9.204570 GACAAGAAATGTTAAACTAGAGCTGTA 57.795 33.333 0.00 0.00 44.12 2.74
338 339 7.715249 TGACAAGAAATGTTAAACTAGAGCTGT 59.285 33.333 0.00 0.00 44.12 4.40
339 340 8.087982 TGACAAGAAATGTTAAACTAGAGCTG 57.912 34.615 0.00 0.00 44.12 4.24
340 341 8.677148 TTGACAAGAAATGTTAAACTAGAGCT 57.323 30.769 0.00 0.00 44.12 4.09
350 351 9.349713 ACTAGAATGGTTTGACAAGAAATGTTA 57.650 29.630 0.00 0.00 44.12 2.41
351 352 8.137437 CACTAGAATGGTTTGACAAGAAATGTT 58.863 33.333 0.00 0.00 44.12 2.71
353 354 7.592533 CACACTAGAATGGTTTGACAAGAAATG 59.407 37.037 0.00 0.00 27.58 2.32
367 368 4.437390 GGTCGCAAATTCACACTAGAATGG 60.437 45.833 0.00 0.00 38.21 3.16
373 374 3.120321 ACAGGTCGCAAATTCACACTA 57.880 42.857 0.00 0.00 0.00 2.74
397 398 1.201414 CATGGGGTAACTTGGAAACGC 59.799 52.381 0.00 0.00 0.00 4.84
398 399 2.785562 TCATGGGGTAACTTGGAAACG 58.214 47.619 0.00 0.00 0.00 3.60
410 411 5.765510 TGCTGAAACTTATAATCATGGGGT 58.234 37.500 0.00 0.00 0.00 4.95
448 450 3.706802 TTTGCGAAACTGAATGCTGAA 57.293 38.095 0.00 0.00 0.00 3.02
459 461 7.912949 TTATGAGCATGATTATTTGCGAAAC 57.087 32.000 0.00 0.00 43.61 2.78
475 477 8.737168 AGAAAATGTGCTATACTTTATGAGCA 57.263 30.769 0.00 0.00 42.47 4.26
516 518 6.293135 GCGGATGAAGAATATCAGAAGTTTCC 60.293 42.308 0.00 0.00 31.76 3.13
535 537 2.672874 TCGAACAAAGAAGATGCGGATG 59.327 45.455 0.00 0.00 0.00 3.51
537 539 2.066262 GTCGAACAAAGAAGATGCGGA 58.934 47.619 0.00 0.00 0.00 5.54
543 545 2.910688 AGCAGGTCGAACAAAGAAGA 57.089 45.000 1.87 0.00 0.00 2.87
575 577 1.001406 AGCCAGACTTGTTCTTCTCCG 59.999 52.381 0.00 0.00 28.96 4.63
583 585 1.529244 GGGTGCAGCCAGACTTGTT 60.529 57.895 29.70 0.00 39.65 2.83
634 636 0.253630 TAGGGGCAAAGGACCTGGAT 60.254 55.000 0.00 0.00 44.19 3.41
654 656 2.125147 GTGCAGCCATACTCCGCA 60.125 61.111 0.00 0.00 0.00 5.69
783 785 6.530887 GGATAACAAAAGTCTAAGAGTCCGAC 59.469 42.308 0.00 0.00 0.00 4.79
799 801 8.994429 ATGCGAAATACATTTTGGATAACAAA 57.006 26.923 7.04 0.00 46.82 2.83
818 820 9.830294 GATTGTTGATATTGATATTGATGCGAA 57.170 29.630 0.00 0.00 0.00 4.70
834 836 7.333323 TCTTCTTGCTCTCATGATTGTTGATA 58.667 34.615 0.00 0.00 0.00 2.15
845 847 4.217836 TCATGCTTCTTCTTGCTCTCAT 57.782 40.909 0.00 0.00 0.00 2.90
850 852 6.413052 TCTTCTTATCATGCTTCTTCTTGCT 58.587 36.000 0.00 0.00 0.00 3.91
879 884 5.625251 GTTGAGCACTGATTATCACAAGTG 58.375 41.667 8.22 8.22 0.00 3.16
881 886 4.201753 CCGTTGAGCACTGATTATCACAAG 60.202 45.833 0.00 0.00 0.00 3.16
930 935 6.705302 CCTAGCCAGATTGAAGCTATCATAA 58.295 40.000 0.00 0.00 38.37 1.90
984 989 0.601057 CCATTTTCACAACCGACCCC 59.399 55.000 0.00 0.00 0.00 4.95
1102 1107 1.665679 CTCATACAACACCGACATGGC 59.334 52.381 0.00 0.00 43.94 4.40
1127 1132 1.428912 TGGTCTTTTCCTTCTGGCCAT 59.571 47.619 5.51 0.00 0.00 4.40
1140 1145 0.111253 CTCCCCACAGCTTGGTCTTT 59.889 55.000 12.18 0.00 45.25 2.52
1194 1199 5.413499 AGAAATATGATGGTTGTTGCAAGC 58.587 37.500 0.00 4.35 0.00 4.01
1198 1203 7.009815 CACATGAAGAAATATGATGGTTGTTGC 59.990 37.037 0.00 0.00 0.00 4.17
1218 1223 1.361204 AGTGACACCCATCCACATGA 58.639 50.000 0.00 0.00 33.53 3.07
1223 1228 1.492599 TCACAAAGTGACACCCATCCA 59.507 47.619 0.84 0.00 37.67 3.41
1231 1236 6.992123 ACTATCAAGTCATTCACAAAGTGACA 59.008 34.615 0.00 0.00 42.60 3.58
1255 1260 9.332301 CATGCCAAAAATGAATTTATTTGTCAC 57.668 29.630 8.78 0.00 31.05 3.67
1269 1274 6.446781 ACAGATCTAGACATGCCAAAAATG 57.553 37.500 0.00 0.00 0.00 2.32
1270 1275 7.318141 CAAACAGATCTAGACATGCCAAAAAT 58.682 34.615 0.00 0.00 0.00 1.82
1271 1276 6.294675 CCAAACAGATCTAGACATGCCAAAAA 60.295 38.462 0.00 0.00 0.00 1.94
1283 1288 2.768527 TCCTGGCTCCAAACAGATCTAG 59.231 50.000 0.00 0.00 36.86 2.43
1303 1308 4.060900 TCTGATGTTTGTCAAGTGCTCTC 58.939 43.478 0.00 0.00 0.00 3.20
1304 1309 4.063689 CTCTGATGTTTGTCAAGTGCTCT 58.936 43.478 0.00 0.00 0.00 4.09
1358 1363 2.158449 CACAAAAGTGAGCGACCTGATC 59.842 50.000 0.00 0.00 0.00 2.92
1407 1412 2.681778 CGTGCCTGTCTCCTCCCT 60.682 66.667 0.00 0.00 0.00 4.20
1424 1429 0.750911 CTCCTGGGAGCTTGAATGCC 60.751 60.000 3.52 0.00 35.31 4.40
1457 1462 4.697756 CGCCCGTGGAAGCCAAGA 62.698 66.667 0.87 0.00 35.05 3.02
1539 1544 0.401105 ATCCCCTCCCCAGTCATGAG 60.401 60.000 0.00 0.00 0.00 2.90
1543 1548 2.135189 CAAATATCCCCTCCCCAGTCA 58.865 52.381 0.00 0.00 0.00 3.41
1596 1601 3.764972 AGAGTTCAGAGTAAGCACCTACC 59.235 47.826 0.00 0.00 0.00 3.18
1603 1608 6.390721 TCACATAACAGAGTTCAGAGTAAGC 58.609 40.000 0.00 0.00 0.00 3.09
1659 1664 1.811965 TCCTTCATCAACCAACATGCG 59.188 47.619 0.00 0.00 0.00 4.73
1702 1707 7.552687 CCAGGTTTCAAGCATCTAGTTTATGTA 59.447 37.037 0.00 0.00 0.00 2.29
1748 1753 7.068226 TCCTCATTAGTCATTACATTCACTCGA 59.932 37.037 0.00 0.00 0.00 4.04
1755 1760 7.200434 ACCTGTCCTCATTAGTCATTACATT 57.800 36.000 0.00 0.00 0.00 2.71
1761 1766 5.596361 CAGTCTACCTGTCCTCATTAGTCAT 59.404 44.000 0.00 0.00 36.37 3.06
1763 1768 5.508200 CAGTCTACCTGTCCTCATTAGTC 57.492 47.826 0.00 0.00 36.37 2.59
1776 1781 3.641906 AGTAGCAAACACACAGTCTACCT 59.358 43.478 0.00 0.00 0.00 3.08
1777 1782 3.741344 CAGTAGCAAACACACAGTCTACC 59.259 47.826 0.00 0.00 0.00 3.18
1778 1783 4.369182 ACAGTAGCAAACACACAGTCTAC 58.631 43.478 0.00 0.00 0.00 2.59
1779 1784 4.665833 ACAGTAGCAAACACACAGTCTA 57.334 40.909 0.00 0.00 0.00 2.59
1780 1785 3.543680 ACAGTAGCAAACACACAGTCT 57.456 42.857 0.00 0.00 0.00 3.24
1821 1826 1.400242 GCAATTCAGCACGAACCAGAC 60.400 52.381 0.00 0.00 36.12 3.51
1857 1862 0.694444 ACATCAGCCGGAACCCCTAT 60.694 55.000 5.05 0.00 0.00 2.57
1965 1970 2.787723 GCAATGCAAGTGGTCGTATTCG 60.788 50.000 0.00 0.00 32.96 3.34
1978 1984 6.270064 CAATAAGATCTGTCATGCAATGCAA 58.730 36.000 13.45 0.00 46.21 4.08
1979 1985 5.735070 GCAATAAGATCTGTCATGCAATGCA 60.735 40.000 11.44 11.44 46.21 3.96
1980 1986 4.680110 GCAATAAGATCTGTCATGCAATGC 59.320 41.667 14.59 0.00 46.21 3.56
1982 1988 6.459670 TTGCAATAAGATCTGTCATGCAAT 57.540 33.333 23.52 0.00 44.53 3.56
2020 2026 5.773239 AGATCAAACACCGTTTATACACG 57.227 39.130 4.42 4.42 40.02 4.49
2223 2229 0.597637 CAAGTTCTGTGTCGCGAGGT 60.598 55.000 10.24 0.00 0.00 3.85
2307 2320 2.203139 TGGTGCACGTGTGGGAAG 60.203 61.111 18.38 0.00 0.00 3.46
2403 2419 2.920384 TGTACGCCCCAGAGCACA 60.920 61.111 0.00 0.00 0.00 4.57
2503 2519 1.818363 CTCTCGATCCCGACGACCA 60.818 63.158 0.00 0.00 40.30 4.02
2504 2520 2.544698 CCTCTCGATCCCGACGACC 61.545 68.421 0.00 0.00 40.30 4.79
2505 2521 3.023950 CCTCTCGATCCCGACGAC 58.976 66.667 0.00 0.00 40.30 4.34
2506 2522 2.900838 GCCTCTCGATCCCGACGA 60.901 66.667 0.00 0.00 40.30 4.20


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.