Multiple sequence alignment - TraesCS6A01G101000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G101000 chr6A 100.000 2310 0 0 1 2310 68975793 68973484 0.000000e+00 4266
1 TraesCS6A01G101000 chr6A 77.953 381 57 15 118 475 68975612 68975236 1.800000e-51 213
2 TraesCS6A01G101000 chr6A 77.953 381 57 15 182 558 68975676 68975319 1.800000e-51 213
3 TraesCS6A01G101000 chr6D 95.528 872 31 2 1166 2030 46930056 46930926 0.000000e+00 1387
4 TraesCS6A01G101000 chr6D 83.386 1264 115 34 808 2031 46909852 46911060 0.000000e+00 1083
5 TraesCS6A01G101000 chr6D 85.359 362 33 5 800 1151 46920125 46920476 7.850000e-95 357
6 TraesCS6A01G101000 chr6D 93.103 232 12 3 2080 2310 46930926 46931154 1.020000e-88 337
7 TraesCS6A01G101000 chr6D 93.377 151 8 1 2133 2283 46911106 46911254 2.990000e-54 222
8 TraesCS6A01G101000 chr6D 77.067 375 55 18 1522 1891 55165809 55165461 1.090000e-43 187
9 TraesCS6A01G101000 chr6D 74.292 424 91 8 1265 1679 55077488 55077074 1.840000e-36 163
10 TraesCS6A01G101000 chr6D 84.426 122 12 5 1787 1907 55077056 55076941 1.880000e-21 113
11 TraesCS6A01G101000 chr2A 94.404 822 23 2 1 799 701777660 701776839 0.000000e+00 1242
12 TraesCS6A01G101000 chr2A 80.668 419 56 13 118 513 701777478 701777062 3.730000e-78 302
13 TraesCS6A01G101000 chr2A 78.554 401 41 20 182 558 701777542 701777163 2.990000e-54 222
14 TraesCS6A01G101000 chr6B 85.176 1194 105 22 866 2024 124992860 124991704 0.000000e+00 1158
15 TraesCS6A01G101000 chr6B 94.211 190 6 4 2123 2310 124991697 124991511 3.760000e-73 285
16 TraesCS6A01G101000 chr6B 76.687 326 36 23 1594 1909 125162062 125161767 6.650000e-31 145
17 TraesCS6A01G101000 chr3A 91.636 825 22 8 1 800 195935178 195934376 0.000000e+00 1098
18 TraesCS6A01G101000 chr3A 91.152 825 26 8 1 800 195919817 195919015 0.000000e+00 1075
19 TraesCS6A01G101000 chr3A 81.146 419 54 11 118 513 195935018 195934602 1.720000e-81 313
20 TraesCS6A01G101000 chr3A 80.430 419 57 11 118 513 195919657 195919241 1.740000e-76 296
21 TraesCS6A01G101000 chr5D 80.056 356 55 9 450 800 58495453 58495109 1.370000e-62 250
22 TraesCS6A01G101000 chr5D 82.212 208 32 4 163 366 58495951 58495745 8.480000e-40 174
23 TraesCS6A01G101000 chr5D 78.912 147 29 2 224 368 58495446 58495300 5.250000e-17 99
24 TraesCS6A01G101000 chr3B 87.568 185 20 1 615 799 824151386 824151567 6.470000e-51 211
25 TraesCS6A01G101000 chr3B 87.568 185 20 1 615 799 824176459 824176640 6.470000e-51 211
26 TraesCS6A01G101000 chr1A 89.262 149 14 2 1 148 29956205 29956352 3.920000e-43 185
27 TraesCS6A01G101000 chr7B 89.691 97 9 1 1 97 403036407 403036502 3.120000e-24 122


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G101000 chr6A 68973484 68975793 2309 True 1564.000000 4266 85.3020 1 2310 3 chr6A.!!$R1 2309
1 TraesCS6A01G101000 chr6D 46930056 46931154 1098 False 862.000000 1387 94.3155 1166 2310 2 chr6D.!!$F3 1144
2 TraesCS6A01G101000 chr6D 46909852 46911254 1402 False 652.500000 1083 88.3815 808 2283 2 chr6D.!!$F2 1475
3 TraesCS6A01G101000 chr2A 701776839 701777660 821 True 588.666667 1242 84.5420 1 799 3 chr2A.!!$R1 798
4 TraesCS6A01G101000 chr6B 124991511 124992860 1349 True 721.500000 1158 89.6935 866 2310 2 chr6B.!!$R2 1444
5 TraesCS6A01G101000 chr3A 195934376 195935178 802 True 705.500000 1098 86.3910 1 800 2 chr3A.!!$R2 799
6 TraesCS6A01G101000 chr3A 195919015 195919817 802 True 685.500000 1075 85.7910 1 800 2 chr3A.!!$R1 799

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
482 506 1.298713 CTTCGCCGGAGTCGATGAG 60.299 63.158 5.05 0.0 38.08 2.9 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1317 1388 0.460987 GACCAGCCGACAGATCAAGG 60.461 60.0 0.0 0.0 0.0 3.61 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
97 98 1.616159 GTGTTGCCCTGGAAGCTTTA 58.384 50.000 0.00 0.00 0.00 1.85
264 266 3.123620 GAAGCACTGCCGGAGCTG 61.124 66.667 5.05 0.00 40.82 4.24
482 506 1.298713 CTTCGCCGGAGTCGATGAG 60.299 63.158 5.05 0.00 38.08 2.90
506 530 2.048222 CCGGAGCTGCAACGAAGA 60.048 61.111 15.79 0.00 0.00 2.87
681 705 5.522097 GGAGAGACGAGGATTCAATTTTCTC 59.478 44.000 0.00 0.00 0.00 2.87
766 792 4.076394 TCACGAGGAGGTTTAAAATTGGG 58.924 43.478 0.00 0.00 0.00 4.12
791 817 2.738643 CGTCAGCCGGATGATTTGTAGT 60.739 50.000 27.42 0.00 34.22 2.73
800 826 3.006537 GGATGATTTGTAGTAGCGCCCTA 59.993 47.826 2.29 1.22 0.00 3.53
801 827 3.728076 TGATTTGTAGTAGCGCCCTAG 57.272 47.619 2.29 0.00 0.00 3.02
802 828 3.293337 TGATTTGTAGTAGCGCCCTAGA 58.707 45.455 2.29 0.00 0.00 2.43
803 829 3.702548 TGATTTGTAGTAGCGCCCTAGAA 59.297 43.478 2.29 7.00 0.00 2.10
804 830 4.160814 TGATTTGTAGTAGCGCCCTAGAAA 59.839 41.667 21.42 21.42 33.75 2.52
805 831 3.795623 TTGTAGTAGCGCCCTAGAAAG 57.204 47.619 2.29 0.00 0.00 2.62
806 832 3.008835 TGTAGTAGCGCCCTAGAAAGA 57.991 47.619 2.29 0.00 0.00 2.52
815 841 2.093447 CGCCCTAGAAAGAATGGACACT 60.093 50.000 0.00 0.00 0.00 3.55
818 844 3.118223 CCCTAGAAAGAATGGACACTCCC 60.118 52.174 0.00 0.00 35.03 4.30
982 1011 1.903877 AAGCACCTCCACCAGATCGG 61.904 60.000 2.55 2.55 42.50 4.18
1004 1033 5.551760 GTGAAGTTGATCACTACAATGGG 57.448 43.478 0.00 0.00 44.98 4.00
1030 1059 2.363795 CTGGAGGCGGGGTAGACA 60.364 66.667 0.00 0.00 0.00 3.41
1057 1095 3.857854 GTGCATCCGCGAGCAGTG 61.858 66.667 18.51 6.47 42.14 3.66
1088 1127 3.057104 TCGCCTCGACTAGAACAATTGAA 60.057 43.478 13.59 0.00 0.00 2.69
1176 1235 2.789409 AAGGTAGTTGAGCATGGTCC 57.211 50.000 21.58 7.69 0.00 4.46
1224 1283 1.609061 CCAGCCTGTTGAGACGAACAT 60.609 52.381 0.00 0.00 35.32 2.71
1226 1285 2.926200 CAGCCTGTTGAGACGAACATAG 59.074 50.000 0.00 0.00 35.32 2.23
1314 1385 4.299796 GGCCAAGGCTTGACCCCA 62.300 66.667 28.18 0.00 40.58 4.96
1317 1388 1.303643 CCAAGGCTTGACCCCAGAC 60.304 63.158 28.18 0.00 40.58 3.51
1346 1417 0.824109 TCGGCTGGTCCAGAATGTAG 59.176 55.000 23.77 6.25 32.44 2.74
1450 1521 2.550978 CGAAATTACGACATGCCTCCT 58.449 47.619 0.00 0.00 35.09 3.69
1451 1522 2.285220 CGAAATTACGACATGCCTCCTG 59.715 50.000 0.00 0.00 35.09 3.86
1476 1547 1.202348 CGGCATGGTCAACAAAACACA 60.202 47.619 0.00 0.00 0.00 3.72
1505 1576 2.143594 AACCTCTCCAGACGACGCAC 62.144 60.000 0.00 0.00 0.00 5.34
1527 1598 3.053291 GGACGGCGCAACCAATGA 61.053 61.111 10.83 0.00 39.03 2.57
1675 1746 9.812347 ATCCCATGTCATGTGTTTATGTTATAT 57.188 29.630 11.84 0.00 0.00 0.86
1892 1970 3.884895 TGCACCGATTTCACCTCATAAT 58.115 40.909 0.00 0.00 0.00 1.28
2033 2123 1.897560 TGGTTTCACACACACACACA 58.102 45.000 0.00 0.00 0.00 3.72
2037 2127 1.884235 TTCACACACACACACACACA 58.116 45.000 0.00 0.00 0.00 3.72
2040 2130 1.265365 CACACACACACACACACACAA 59.735 47.619 0.00 0.00 0.00 3.33
2045 2135 1.950216 ACACACACACACACAAACACA 59.050 42.857 0.00 0.00 0.00 3.72
2046 2136 2.287308 ACACACACACACACAAACACAC 60.287 45.455 0.00 0.00 0.00 3.82
2050 2140 2.556189 ACACACACACAAACACACACAT 59.444 40.909 0.00 0.00 0.00 3.21
2052 2142 4.094911 CACACACACAAACACACACATAC 58.905 43.478 0.00 0.00 0.00 2.39
2054 2144 4.094911 CACACACAAACACACACATACAC 58.905 43.478 0.00 0.00 0.00 2.90
2056 2146 4.094911 CACACAAACACACACATACACAC 58.905 43.478 0.00 0.00 0.00 3.82
2058 2148 4.094911 CACAAACACACACATACACACAC 58.905 43.478 0.00 0.00 0.00 3.82
2060 2150 4.094911 CAAACACACACATACACACACAC 58.905 43.478 0.00 0.00 0.00 3.82
2062 2152 2.675844 ACACACACATACACACACACAC 59.324 45.455 0.00 0.00 0.00 3.82
2064 2154 2.675844 ACACACATACACACACACACAC 59.324 45.455 0.00 0.00 0.00 3.82
2066 2156 2.675844 ACACATACACACACACACACAC 59.324 45.455 0.00 0.00 0.00 3.82
2098 2190 5.904941 AGAGAGATCTAAGCACACATTGAG 58.095 41.667 0.00 0.00 0.00 3.02
2099 2191 5.655974 AGAGAGATCTAAGCACACATTGAGA 59.344 40.000 0.00 0.00 0.00 3.27
2100 2192 5.904941 AGAGATCTAAGCACACATTGAGAG 58.095 41.667 0.00 0.00 0.00 3.20
2101 2193 5.655974 AGAGATCTAAGCACACATTGAGAGA 59.344 40.000 0.00 0.00 0.00 3.10
2102 2194 6.324512 AGAGATCTAAGCACACATTGAGAGAT 59.675 38.462 0.00 0.00 0.00 2.75
2103 2195 7.505248 AGAGATCTAAGCACACATTGAGAGATA 59.495 37.037 0.00 0.00 0.00 1.98
2104 2196 7.660112 AGATCTAAGCACACATTGAGAGATAG 58.340 38.462 0.00 0.00 0.00 2.08
2105 2197 6.154203 TCTAAGCACACATTGAGAGATAGG 57.846 41.667 0.00 0.00 0.00 2.57
2106 2198 3.834489 AGCACACATTGAGAGATAGGG 57.166 47.619 0.00 0.00 0.00 3.53
2107 2199 3.378512 AGCACACATTGAGAGATAGGGA 58.621 45.455 0.00 0.00 0.00 4.20
2108 2200 3.972638 AGCACACATTGAGAGATAGGGAT 59.027 43.478 0.00 0.00 0.00 3.85
2109 2201 4.040217 AGCACACATTGAGAGATAGGGATC 59.960 45.833 0.00 0.00 0.00 3.36
2110 2202 4.040217 GCACACATTGAGAGATAGGGATCT 59.960 45.833 0.00 0.00 45.59 2.75
2111 2203 5.244851 GCACACATTGAGAGATAGGGATCTA 59.755 44.000 0.00 0.00 42.80 1.98
2112 2204 6.239430 GCACACATTGAGAGATAGGGATCTAA 60.239 42.308 0.00 0.00 42.80 2.10
2113 2205 7.377398 CACACATTGAGAGATAGGGATCTAAG 58.623 42.308 0.00 0.00 42.80 2.18
2114 2206 6.014669 ACACATTGAGAGATAGGGATCTAAGC 60.015 42.308 0.00 0.00 42.80 3.09
2115 2207 5.184864 ACATTGAGAGATAGGGATCTAAGCG 59.815 44.000 0.00 0.00 42.80 4.68
2116 2208 3.085533 TGAGAGATAGGGATCTAAGCGC 58.914 50.000 0.00 0.00 42.80 5.92
2117 2209 3.085533 GAGAGATAGGGATCTAAGCGCA 58.914 50.000 11.47 0.00 42.80 6.09
2118 2210 2.823154 AGAGATAGGGATCTAAGCGCAC 59.177 50.000 11.47 0.00 42.80 5.34
2119 2211 2.558795 GAGATAGGGATCTAAGCGCACA 59.441 50.000 11.47 0.00 42.80 4.57
2120 2212 3.169099 AGATAGGGATCTAAGCGCACAT 58.831 45.455 11.47 0.00 40.85 3.21
2121 2213 3.580458 AGATAGGGATCTAAGCGCACATT 59.420 43.478 11.47 0.00 40.85 2.71
2122 2214 1.959042 AGGGATCTAAGCGCACATTG 58.041 50.000 11.47 0.00 0.00 2.82
2123 2215 1.486310 AGGGATCTAAGCGCACATTGA 59.514 47.619 11.47 2.02 0.00 2.57
2124 2216 1.869767 GGGATCTAAGCGCACATTGAG 59.130 52.381 11.47 0.00 0.00 3.02
2125 2217 2.483714 GGGATCTAAGCGCACATTGAGA 60.484 50.000 11.47 0.00 0.00 3.27
2126 2218 2.799412 GGATCTAAGCGCACATTGAGAG 59.201 50.000 11.47 0.00 0.00 3.20
2127 2219 3.491619 GGATCTAAGCGCACATTGAGAGA 60.492 47.826 11.47 0.00 0.00 3.10
2128 2220 3.156511 TCTAAGCGCACATTGAGAGAG 57.843 47.619 11.47 0.00 0.00 3.20
2129 2221 2.755103 TCTAAGCGCACATTGAGAGAGA 59.245 45.455 11.47 0.00 0.00 3.10
2130 2222 2.007360 AAGCGCACATTGAGAGAGAG 57.993 50.000 11.47 0.00 0.00 3.20
2131 2223 1.180907 AGCGCACATTGAGAGAGAGA 58.819 50.000 11.47 0.00 0.00 3.10
2132 2224 1.134753 AGCGCACATTGAGAGAGAGAG 59.865 52.381 11.47 0.00 0.00 3.20
2133 2225 1.133982 GCGCACATTGAGAGAGAGAGA 59.866 52.381 0.30 0.00 0.00 3.10
2229 2321 2.776536 CCTCCCTCTTCACTGATTGGAT 59.223 50.000 0.00 0.00 0.00 3.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
264 266 1.351153 CTCCGGCTTCTCTTCGTTTC 58.649 55.000 0.00 0.00 0.00 2.78
506 530 1.376424 CATTGCAGCTCCGGTGACT 60.376 57.895 7.92 1.06 32.22 3.41
645 669 0.394565 GTCTCTCCAGTGCAACACCT 59.605 55.000 0.00 0.00 41.43 4.00
681 705 3.663176 CCACGTGCACAGCCCAAG 61.663 66.667 18.64 0.40 0.00 3.61
766 792 0.249489 AATCATCCGGCTGACGCTAC 60.249 55.000 10.77 0.00 42.52 3.58
791 817 2.102588 GTCCATTCTTTCTAGGGCGCTA 59.897 50.000 7.64 10.42 0.00 4.26
800 826 7.510675 TTATTAGGGAGTGTCCATTCTTTCT 57.489 36.000 0.00 0.00 38.64 2.52
801 827 8.753497 AATTATTAGGGAGTGTCCATTCTTTC 57.247 34.615 0.00 0.00 38.64 2.62
802 828 9.853177 CTAATTATTAGGGAGTGTCCATTCTTT 57.147 33.333 4.16 0.00 38.64 2.52
882 909 2.125753 GCTCCTGCTCACCGTCTG 60.126 66.667 0.00 0.00 36.03 3.51
942 971 3.959387 TCCTTCGGGACCCATGATA 57.041 52.632 12.15 0.00 39.58 2.15
960 989 1.211457 GATCTGGTGGAGGTGCTTCAT 59.789 52.381 0.00 0.00 0.00 2.57
963 992 1.599047 CGATCTGGTGGAGGTGCTT 59.401 57.895 0.00 0.00 0.00 3.91
982 1011 5.003804 ACCCATTGTAGTGATCAACTTCAC 58.996 41.667 0.00 0.00 45.15 3.18
1022 1051 2.350522 CACATGTGCTTCTGTCTACCC 58.649 52.381 13.94 0.00 0.00 3.69
1076 1115 7.576403 TCATGATCCCATCTTCAATTGTTCTA 58.424 34.615 5.13 0.00 0.00 2.10
1079 1118 5.597182 CCTCATGATCCCATCTTCAATTGTT 59.403 40.000 5.13 0.00 0.00 2.83
1088 1127 2.388526 TCGTCCTCATGATCCCATCT 57.611 50.000 0.00 0.00 0.00 2.90
1176 1235 2.221055 GCGATATACAAAGCTTGGTCGG 59.779 50.000 10.53 0.00 34.12 4.79
1187 1246 1.067974 CTGGACGGTGGCGATATACAA 59.932 52.381 0.00 0.00 0.00 2.41
1224 1283 2.424601 GCAAGCAAATCATGTGCCTCTA 59.575 45.455 0.00 0.00 43.27 2.43
1226 1285 1.636988 GCAAGCAAATCATGTGCCTC 58.363 50.000 0.00 0.00 43.27 4.70
1314 1385 0.534412 CAGCCGACAGATCAAGGTCT 59.466 55.000 0.00 0.00 31.88 3.85
1317 1388 0.460987 GACCAGCCGACAGATCAAGG 60.461 60.000 0.00 0.00 0.00 3.61
1346 1417 1.139095 CGTACTCTTCACCCGCTCC 59.861 63.158 0.00 0.00 0.00 4.70
1381 1452 1.600916 GACCAAGAAGGCCGCAAGT 60.601 57.895 0.00 0.00 43.14 3.16
1450 1521 2.203408 TTGACCATGCCGCCAACA 60.203 55.556 0.00 0.00 0.00 3.33
1451 1522 2.081425 TTGTTGACCATGCCGCCAAC 62.081 55.000 0.00 0.00 39.29 3.77
1476 1547 6.371825 GTCGTCTGGAGAGGTTTATTTTTCAT 59.628 38.462 0.00 0.00 0.00 2.57
1505 1576 2.818274 GGTTGCGCCGTCCTTAGG 60.818 66.667 4.18 0.00 0.00 2.69
1527 1598 6.875972 ACTTCAAGACTACATGGATTACCT 57.124 37.500 0.00 0.00 37.04 3.08
1537 1608 6.036577 TGATGTGCATACTTCAAGACTACA 57.963 37.500 0.00 0.00 37.84 2.74
1779 1857 1.909302 ACACTTCCATCTTCATCGGGT 59.091 47.619 0.00 0.00 0.00 5.28
1946 2035 8.731275 TTTGTCTAAAAAGAGATGTTGAGTCA 57.269 30.769 0.00 0.00 0.00 3.41
2033 2123 3.753797 TGTGTATGTGTGTGTTTGTGTGT 59.246 39.130 0.00 0.00 0.00 3.72
2037 2127 3.753797 TGTGTGTGTATGTGTGTGTTTGT 59.246 39.130 0.00 0.00 0.00 2.83
2040 2130 3.126171 GTGTGTGTGTGTATGTGTGTGTT 59.874 43.478 0.00 0.00 0.00 3.32
2045 2135 2.675844 GTGTGTGTGTGTGTGTATGTGT 59.324 45.455 0.00 0.00 0.00 3.72
2046 2136 2.675348 TGTGTGTGTGTGTGTGTATGTG 59.325 45.455 0.00 0.00 0.00 3.21
2050 2140 2.494073 TCTCTGTGTGTGTGTGTGTGTA 59.506 45.455 0.00 0.00 0.00 2.90
2052 2142 1.929169 CTCTCTGTGTGTGTGTGTGTG 59.071 52.381 0.00 0.00 0.00 3.82
2054 2144 2.099756 TCTCTCTCTGTGTGTGTGTGTG 59.900 50.000 0.00 0.00 0.00 3.82
2056 2146 2.620585 TCTCTCTCTCTGTGTGTGTGTG 59.379 50.000 0.00 0.00 0.00 3.82
2058 2148 3.145286 TCTCTCTCTCTCTGTGTGTGTG 58.855 50.000 0.00 0.00 0.00 3.82
2060 2150 3.673902 TCTCTCTCTCTCTCTGTGTGTG 58.326 50.000 0.00 0.00 0.00 3.82
2062 2152 4.774124 AGATCTCTCTCTCTCTCTGTGTG 58.226 47.826 0.00 0.00 0.00 3.82
2064 2154 5.468072 GCTTAGATCTCTCTCTCTCTCTGTG 59.532 48.000 0.00 0.00 32.66 3.66
2066 2156 5.468072 GTGCTTAGATCTCTCTCTCTCTCTG 59.532 48.000 0.00 0.00 32.66 3.35
2098 2190 2.558795 TGTGCGCTTAGATCCCTATCTC 59.441 50.000 9.73 0.00 41.71 2.75
2099 2191 2.598565 TGTGCGCTTAGATCCCTATCT 58.401 47.619 9.73 0.00 44.80 1.98
2100 2192 3.601443 ATGTGCGCTTAGATCCCTATC 57.399 47.619 9.73 0.00 0.00 2.08
2101 2193 3.324846 TCAATGTGCGCTTAGATCCCTAT 59.675 43.478 9.73 0.00 0.00 2.57
2102 2194 2.698274 TCAATGTGCGCTTAGATCCCTA 59.302 45.455 9.73 0.00 0.00 3.53
2103 2195 1.486310 TCAATGTGCGCTTAGATCCCT 59.514 47.619 9.73 0.00 0.00 4.20
2104 2196 1.869767 CTCAATGTGCGCTTAGATCCC 59.130 52.381 9.73 0.00 0.00 3.85
2105 2197 2.799412 CTCTCAATGTGCGCTTAGATCC 59.201 50.000 9.73 0.00 0.00 3.36
2106 2198 3.711086 TCTCTCAATGTGCGCTTAGATC 58.289 45.455 9.73 0.00 0.00 2.75
2107 2199 3.382865 TCTCTCTCAATGTGCGCTTAGAT 59.617 43.478 9.73 0.00 0.00 1.98
2108 2200 2.755103 TCTCTCTCAATGTGCGCTTAGA 59.245 45.455 9.73 1.49 0.00 2.10
2109 2201 3.114809 CTCTCTCTCAATGTGCGCTTAG 58.885 50.000 9.73 0.00 0.00 2.18
2110 2202 2.755103 TCTCTCTCTCAATGTGCGCTTA 59.245 45.455 9.73 0.00 0.00 3.09
2111 2203 1.547820 TCTCTCTCTCAATGTGCGCTT 59.452 47.619 9.73 0.00 0.00 4.68
2112 2204 1.134753 CTCTCTCTCTCAATGTGCGCT 59.865 52.381 9.73 0.00 0.00 5.92
2113 2205 1.133982 TCTCTCTCTCTCAATGTGCGC 59.866 52.381 0.00 0.00 0.00 6.09
2114 2206 2.682352 TCTCTCTCTCTCTCAATGTGCG 59.318 50.000 0.00 0.00 0.00 5.34
2115 2207 3.947196 TCTCTCTCTCTCTCTCAATGTGC 59.053 47.826 0.00 0.00 0.00 4.57
2116 2208 5.430886 TCTCTCTCTCTCTCTCTCAATGTG 58.569 45.833 0.00 0.00 0.00 3.21
2117 2209 5.426509 TCTCTCTCTCTCTCTCTCTCAATGT 59.573 44.000 0.00 0.00 0.00 2.71
2118 2210 5.922053 TCTCTCTCTCTCTCTCTCTCAATG 58.078 45.833 0.00 0.00 0.00 2.82
2119 2211 5.901853 TCTCTCTCTCTCTCTCTCTCTCAAT 59.098 44.000 0.00 0.00 0.00 2.57
2120 2212 5.272402 TCTCTCTCTCTCTCTCTCTCTCAA 58.728 45.833 0.00 0.00 0.00 3.02
2121 2213 4.871822 TCTCTCTCTCTCTCTCTCTCTCA 58.128 47.826 0.00 0.00 0.00 3.27
2122 2214 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
2123 2215 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
2124 2216 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
2125 2217 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
2126 2218 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
2127 2219 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
2128 2220 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
2129 2221 5.136068 TCTCTCTCTCTCTCTCTCTCTCT 57.864 47.826 0.00 0.00 0.00 3.10
2130 2222 5.774690 AGATCTCTCTCTCTCTCTCTCTCTC 59.225 48.000 0.00 0.00 0.00 3.20
2131 2223 5.714863 AGATCTCTCTCTCTCTCTCTCTCT 58.285 45.833 0.00 0.00 0.00 3.10
2132 2224 7.531857 TTAGATCTCTCTCTCTCTCTCTCTC 57.468 44.000 0.00 0.00 32.66 3.20
2133 2225 6.014669 GCTTAGATCTCTCTCTCTCTCTCTCT 60.015 46.154 0.00 0.00 32.66 3.10


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.