>input_sequence_84290
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--------------------------------------------------------------------ATGGGTCCCGTT
GCTGGAGGCGGGGTAGACA---------GAAGCACATGTGCATCCGCGAGCAGTGAGTCTATGTCGCCTC-GACTAGAAC
AATTGAAGATGGGATCATGAGGACGATTAAAGCAATGAAAATACTTGCACCCATTCTTGTTCAGAAGCAGAGGTTAAGGT
AGTTGAG--------------------CATGGTCCCGACCAAGCTTTGTATATCGCCACCGTCCAGCCTGTTGAGACGAA
CATAGAGGCACATGATTTGCTTGCGC------GCAATCTTGAGGAACCACTTGGCCTTGGTAAGGAGA---TAGCTTGGG
CGAAGGCCAAGGC---TTGA------------------------------------------------------------
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>chr6A_1_TraesCS6A01G101000
CGAAGGCCGGAGTCGGGCGCCGCTCGCCGCCGGTGATGCAACGCAGCACACAAGGAGGAGGCTCGGCTGCTCGCGTCGGT
GTTGCCCTGGAAGCTTTA-TCGCGCCGCGGGAGCTGCAATGGAGCGCCGCCTGGGCTGCGATGGAGCCGCCGCGGAGCTC
CATTGAAGCTTCGCCGGAGTTGATGAAGCGCCGCCCGGGCTGCGATGGAGCCGCCGCGGAGCTCCATTGAAGCTTCGCCG
GAGTTGATGAAGCACTGCCGGAGCTGAAACGAAGAGAAGCCGGAGCTACAATGAAGCGCAGCGGGGGGTCGTTGAAGCTT
CGCCAGAGTCAATGATGCACCGCCGGAGTTGCAACGAAGCGTCGCCGGAGCTGCAATGAAGCGCAGCGGGGGGTTGTTGA
AGCTTCGCCGGAGTCGATGAAGCACCGCCGGAGTTG----------------------CAATGAAGCGCAGTGGGGGCTC
GTTGAAGCTTCGCCGGAGTCGATGAGGCACCACCGGAGCTGCAACGAAGAGTCACCGGAGCTGCAATGAAGCGTTGAGGG
GTCGTTGAAGCTCCACCGGAGATGCAATGGAGCGTCGCCCTCGCCGGTGATGCAATGGAGCGCCGCCGGACGCCGAAGGT
GCTGCCATGGGAGCTGCGAGCGGTGAACAGGTGTTGCACTGGAGAGACGAGGATTCAATTTTCTCT--TGGGCTGTGCAC
GTGGCCTAGCTGGCACAATGGACGGCTGCGCAAAGCCTCATCTAACGGCTCACGAGGAGGTTTAAAATTGGGTAGCGTCA
GCCGGATGATTTGTAGTAGCGCCCTAGAAAGAATGGACACTCCCTAATAATTAGGTACGAGCTTTTT-TGAGGGACTATC
TTAAAATTGCTCTTTAAGCAAACAGTTCCAGACGGTGAGCAGGAGCTCTTGTCTCACGCGCACATGCAG-GA-TAGCAAG
GTACTTGCGTTATCATGGGTCCCGAAGGATGAAGCACCTCCACCAGATCGGTGAAGTTGATCACTACAATGGGTCCCGTT
GCTGGAGGCGGGGTAGACA---------GAAGCACATGTGCATCCGCGAGCAGTGAGTCTATGTCGCCTC-GACTAGAAC
AATTGAAGATGGGATCATGAGGACGATTAAAGCAATGAAAATACTTGCACCCATTCTTGTTCAGAAGCAGAGGTTAAGGT
AGTTGAG--------------------CATGGTCCCGACCAAGCTTTGTATATCGCCACCGTCCAGCCTGTTGAGACGAA
CATAGAGGCACATGATTTGCTTGCGC------GCAATCTTGAGGAACCACTTGGCCTTGGTAAGGAGA---TAGCTTGGG
CGAAGGCCAAGGC---TTGACCCCAGACCTTGATCTGTCGGCTGGTCCAGAATGTAGGAGCGGGTGAAGAGTACGAGGTG
TTCCACCAAAAACTTGCGGCCTTCTTGGTCCAGATGCAGGCGGATCATCTCCGATAGAAGCGAAATTACGACATGCCTCC
TGTTGGCGGCATGGTCAACAAAACACATGAAAAATAAACCTCTCCAGACGACGCACCTAAGGACGGCGCAACCAATGAGG
TAATCCATGTAGTCTTGAAGTATGCACATCAGGCATCTCTAGAGTATGATGCTTCTATCCTGATTCCTGATGGCTCCTAT
TCCTACACCTTGACATCAACCATTTTTGTTTTGAATAATATCCCATGTCATGTGTTTATGTTATATTATAACAACAAACT
G-------GTATATACTAATGTGTTATGAGACTGAAAGAAAGAGCAAAGTGTGGATGAGTGCACTAGTGTGGATGTGATT
GATGTATATATTATCTACCCGATGAAGATGGAAGTGTTTGTATATGTAGGAGGAGGAGAGAACATACCATTTTCTATACA
TTTAAAGAAGGTTGGTGGGCTATTCATTTGCACCGATTTCACCTCATAAT---------ACTTGTGCTCTATTTTGACTT
ACTAAGACTATTTTT--CTCCTCTAAATCAATAATGACTCAACATCTCTTTTTAGACAAAAGGCATCTTCCCATATG-TA
AAGCCTCGAAAAGACCCGATGAATGGTTTCACACACACACACACACACAAACACACACATACACACACACACACAC--AG
AGAGAGAGAGAGATCTAAGCACACATTGAGAGATAGGGATCTAAGCGCACATTGAGAGAGAGAGAGAGAGAGAGAGAGAG
AGATCTAAGCACATTGAGCAACCTGACACCGACATTTGCCATCTCCAATGAAGACTTGTCCTCCCTCTTCACTGATTGGA
TCAAAGCTACATAAACATAAGTATTCTATAAATAAGCAATCAACCTGTTGATTAGGGATAATCTACTCATGTTGCTAACC
T
>chr2A_1
CGAAGGCCGGAGTCGGGCGCCGCTCGCCGCCGGTGATGCAACGCAGCACACAAGGAGGAGGCTCGGCTGCTCGCGTCGAT
GTTGCCCTGGAAGCTTTTGTCGCGCCGCGGGAGCTGCAATGGAGCGCCGCCCGGGCTGCGATGGAGCCGCCGCGGAGCTC
CATTGAAGCTTCGCCGGAGTTGATGAAGCGCCGCCCGGGCTGCGATGGAGTCGCCGCGGAGCTCCATTGAAGCTTCGCCG
GAGTTGATGAAGCACTGTCGGAGCTAAAACGAAGAGAAGCCGGAGCTACAATGAAGCGCAGCAGGGGGTCGTTGAAGCTT
CGCCAGAGTCAATGATGCACCGCCGGAGTTGCAATGAAGCGTCGCCGAAGCTGCAATGAAGCGCAGCGGGGGGTCGTTGA
AGCTTCGCCGGAGTCGATGAAGCACCGCCGGAGTTGCAACGAAGCATTGCCGGAGCTGCAATGAAGCGCAGTGGGGGGTC
GTCGAAGCTTCGCCGGAGTCGATGAAGCACCACCGAAGCTGCAACGAAGGGTCATCGGAGCTGCAATGAAGCATTGAGGG
GTCGTTGAAGCTCCACCGGAGATGCAATGGAGCGTCGCCCTCGCCGGTGATGCAATGGAGCGCCGCCGGACGCCGAAGGT
GCTGCCACGGGAGCTGCGAGCGGTGAACGGGTGTTGCACTGGAGAGACGAGGATTCAATTTTCTAT--TGGGCTGTGCAC
GTGGCCTAGCTGGCACAACGGACGGCTGCGCAAAGCCTCATCTAACGGCTCACGAGGAGGTTTAAAATTGGCTAGCGTCA
GCCGGATGATTTGTAGCAGCGCCC--------------------------------------------------------
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>chr3A_1
CGAAGGCCGGAGTCAGGCGCCGCTCGCCGCCGGTGATGCAACGCAGCACACAAGGAGGAGGCTCAGCTGCTCGCGTCGGT
GTTGCCCTGGAAGCTTTTGTCGCGCCACGGGAGCTGCAATGCATCACCG----------------------GCGGAGCTC
CATTGAAGCTTCGCCGGAGTTGATGAAGCGCCGCCCGGGCTGCGATGGAGCCGCCGCGGAGCTCCATTGAAGCTTCGCCG
GAGTTGATGAAGCACTGCCGGAGCTAAAACGAAGAGAAGCCGGAGCTACAATGAAGCGCAGCGGGGGGTCGTTGAAGCTT
CGCCAGAGTCAATGATGCACCGCCGGAGTTGCAACGAAGCGTCGCCGGAGCTGCAATGAAGCGCAGCGGGGGGTCATTGA
AGCTTCGCCGGAGTCGATGAAGCACCGCCGGAGTTGCAACGAAGCGTTGCCGGAGTTGCAATGAAGCGCAGTGGGGGGCC
GTTGAAGCTTCGCCGGAGTCGATGAAGCACCACCGGAGCTGCAACGAAGGATCACCGGAGCTGCAATGAAGCGTTGAGGG
GTCGTTGAAGCTCCACCGGAGATGCAATGGAGCGTCGCCCTCGCCGGTGATGCAATGGAGCGCCGCCGGACGCCGAAGGT
GCTGCCACGGGAGCTGCGAGCGGTGAACGGGTGTTGCACTGGAGAGACGAGGATTCAATTTTCTATATTGGGCTGTGCAT
GTGGCCTAGCTGGCACAACGGACGGCTGTGCAAAGCCTCATCTAACGGCTCACGAGAAGGTTTAAAATTGGCTAGCGTCA
GCCGGATGATTTGTAGCAGCGCCCT-------------------------------------------------------
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>chr3A_1
CGAAGGCCGGAGTCGGGTGCCGCTCGCCACCGGTGATGCAACGCAGCACACAAGGAGGAGGCTCAGCTGCTCGCGTCGGT
GTTGCCCTGGAAGCTTTTGTCGCGCCGCGGGAGCTGCAATGCATCACCG----------------------GCGGAGCTC
CATTGAAGCTTCGCCGGAGTTGATGAAGCGCCGCCCGGGCTGCGATGGAGCCGCCGCGGAGCTCCATTGAAGCTTCGCCG
GAGTTGATGAAGCACTACCGGAGCTAAAACGAAGAGAAGCCGGAGCTACAATGAAGCGCAGCGGGGGGTCGTTGAAGCTT
CGCCAGAGTCAATGATGCACCGCCGGAGTTGCAACGAAGCGTCGCCGGAGCTGCAATGAAGCGCAGCGGGGAGTCATTGA
AGCTTTGCCGGAGTCGATGAAGCACCGCCGGAGTTGCAACGAAGCGTTGCCGGAGTTGCAATGAAGCGCAGTGGGGGGCC
GTTGAAGCTTCGCCGGAGTCGATGAAGCACCACCGGAGCTGCAACGAAGGATCACCGGAGCTGCAATGAAGCGTTGAGGG
GTCGTTGAAGCTCCACCGGAGATGCAATGGAGCGTCGCCCTCGCCGGTGATGCAATGGAGCGCCGCCGGACGCTGAAGGT
GCTGCCACGGGAGCTGCGAGCGGTGAACGGGTGTTGCACTGGAGAGACGAGGATTCAATTTTCTATACTGGGTTGTGCAT
GTGGCCTAGCTGGCACAACGGACGGCTGCGCAAAGCCTCATCTAACGGCTCACGAGGAGGTTTAAAATTGGCTAGCGTCA
GCCGAATGATTTGTAGCAGCGCCCT-------------------------------------------------------
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>chr6D_808
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--------------------------------ATGGACACACCATAATAATTAGGAACAAACTTTTTTTGAGGGACCATC
TTAAATTTGCTCTTTAAGCAAACAGTTC------GTGCGCAGGAGCTCTAGTCTCACGCGCACATGCAGCGA-TAGCAAG
GTACTTGCGTCATCATGGATACCGAAGGCTGGAGCCA---------------------GATCACTACAATGGTTCCCGTT
GCTGGAGGCGAGGCAGAT---------GGAAGCACATGTGCATCTACGAGCAGTAAGTCTATGTCGCCTCTGACCAGTAC
AATTGACGATGGGATCATGAGGACAATTAAGGCAATGAAAATACTTGCACCCATTCTTGTTCAGAAGCAGAGGTTAAGGT
AGTTGATCATGTTGATCTCCTTGTGACCATGGTGTCGACCATGCTCTGTGTATCTCTACAGTCCAGCATGTTGAGACAAA
CACACATGCACATGATTTGCTTGCGCTCC---GCAATCTTGAGGAACAAGTTAGCCTTCACAATGAGA---TAGCTTGGA
CGAAGGCCAAGGCCACTTGACCCTGGA---TGATCCGTAGGCTTGTCTAGAATGTACAGGCGGGTGAAGAATACGAGGTG
TTCCATCAAAATATTGCGGCCTTCTCGAAGTAGCTGCAGGCGTATCATCTCCGACAGAAGCAAAATTGTGACATGCCTCC
CCTTGGCGGCATGGTGAACAAAGCGCGTGAAAAATAAACTTCTCCAGATGACGCAGCTAAGGACGGCGCAACCAATGGGG
TAATCCAAGTAGTCTTGACGTATGCACATCATGCATCTGTAGAGTATGATGCTTCTGTCCTGAT-------GCCTCCTAT
TCCTACACCTTGACATCAACCATTTTTGTTTTAAATACTATCCCATGTCATGTGTTTACGTTATAGTATAACAATAAACT
T-------GTATATACAAAAGTTTTATGAAAATGAAATAAAGAGCAA------------------AGTGTGGATGTGATC
GATGCATATACTATCTGCCGGGTGAAGATGGAAGTGGTTGTATATGTAGGAGGAGGAGAGAGCATACCATTCTCTATACA
TTTAAAGAAGGTTGGTGGACTATTCATTTGCACCGATTTCACCTCATAACAGTAACGACACTTGTGCTCTATTTTGACTT
ACTAGAACTATTTTTTTCTCCTCTGAATCAATAACGACTCAAGTTCTCTTTTTAGACAAAAGGCAACTTCCCATATG-TA
AAGCCTCGAAAAGACCTGATGAATGGTTTCACACACACACGCGCGCGCGCGCGCCTGC----------------------
AGAGGGAGAGAGATCTAAGCACACATTGA------------------------------------GAGAGAGAGAGAGAG
AGATCTAAGCACAATGAGCAACCTGGCACCGACATTTGCCATCTCCAATGAAGACTCGTCCTCCCTCCTCACTGATTGGA
CCAAAGCTACATAAACATAAGTATTCTA--AATAAGCAACCCACTTGTTGATTA--------------------------
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>chr6B_866
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-----------CTTTAAGCAAACAGTTCATGACGGTGAGCAGGAGCTCTTGTCTCACGCGCACATGCAG-GGCTAGCAAG
GTACTTACGTCATCATCGGTCCCGGAGGCTGGAGCACCTCCACCAGATCGTTGAAGTTGATCACTGT----------GTT
GCTGGAGGCGAGGTAGACTCCACGAGGGGAAGCACATGTGCATCCGC------------------------GACCAGTAC
AATTGACAATAGGATCATGAGGACGTTTAAAGCAATGAAAATACGTGCACCCATTCTTGTTCATAAGCAGAGGTTAAGGT
AGTTGATCATGTTGATCTCCTCGTGCACATGGTCTCGACCAAGCTCTGTATATCGCCACCGTCCAGCCTGTTGACACGAA
TACACAGGCACGTGATTTGGTTGCGCTCCGCAGCAATCTTGAGGAACGACTTGCCCTTGGCAAGGAGATACTAGCTTGGG
CGAAGGCCAAGGCCACTTGACCCCGGA---TGATCCGTTGGCTGGTCCAGAATGTACGCACGGGTGAAGACGACGAGGTG
TTTCGTCAAAATATTGCGGCCTTCTCGGTCCAGCTGCAGGCGCATCATCTCTGACAGAAGCGAAATCATGACATGCCTCC
CCTTGGCGGCATGGTGGACAAAGCACGTGAAAAATAAACTTGTCCGGATGACGCAGCTAAGGACGCCGCAACCAATGGGG
TAATCCAAGTAGTCTGGAAGTATGCACATCAGGCATCTCTAGAGTATGATGCTTCTA-------TCCTGATGCCTCCTAT
TCCTACAACTTGACATCAACCATTTTTGTTTTGAATACTATCACATGTCATGTGTTTACGTTATAGTATAACAATAAACT
G-------GTATATACTAAAGTGTTATGAGAATGAAAGAAAGAGCAAAGTGTGGATGAGTGCACTAGTGTGGATGTGATC
GATGCATATACTATCTGCCGGGTGAAGATGGAAGTGGTTGTATATGT---AGGAGGAGAGAACAGACCATTTTCTATACA
TTTAAAGAAGGTTGGTGGACTATTCATTTGCACTGGTTTTACCTCATA---------ACACTTGTGCTCTATTTTGATTT
ACTAGAACTA-TTTTTTCTCCTCTGAATCAATAACGATTCAAGATCTCTTTTTAGACAAAAGGCATCTTCCCATACTATA
AAGCCTCGAAAAGACCCGATGAATGGTTTTACA----------------------------------------GAGAGAG
AGAGAGAGAGAGAG-----------------------------------------------------GAGGGAGATAGAG
AGATCTAAGCACATTGAGCAACCTGATCACCGACATTGCCATCTCCAAGGAAGACTTGTCCTCCCTCTTCACTGATTGGA
CCAAAGCTACATAAACATAAGTATTCTA--AATAAGCAATCAACCTGTTGATTAAGTATAATCTACTCATGTTGCTAACC
T
>chr6D_1166
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---TGAG--------------------CATGGTCTCGACCAAGCTGTGTATATCGCCACCGTCCAGCCTGTTGAGACGAA
CACATAGGCACATGATTTGCTTGCGC------GCAATCTTCAGGAACCACTTGGCCTTGGTAAGGAGA---TAGCTTGGG
CGAAGGCCAAGGC---TTGACCCCGGATCTTGATCTGTCGGCTGGTCTAGAATGTACGAGCGGGTGAAGAGTACGAGGTG
TTCCAC-AAAAGCTTGCGGCCTTCTTGGTCCAGATGCAGGCGGATCATCTCCGATAGAAGCGAAATTACGACATGCCTCC
CTTTAGCGGCATGGTCAACACAACACGTGAAAAATAAACCTCTCCAGACGACGCAGCTAAGGACGGCGCAACCAATGGGG
TAACCCACGTAGTCTTGAAGTATGCACATCAGGCATCTCTAGAGTATGATGCTTCTATCCTGATTCCTGATGGCTCCTAT
TCCTACACCTTGACATCAACCATTTTTGTTTTGAATAATATCCCATGTCATGTGTTTATGTTATAGTATAACAACAAACT
GGTATATAGTATACACTAATGTGTTATGAGACTGAAAGAAAGAGCAAAGTGTGGATGAGTGCACTAGTGTGGATGTGATT
GATGTATATATTATCTGCCCGGTGAAGATGGAAGTTTTTGTATATGTAGGAGGAGGAGAGAACATACCATTTTCTATACA
TTTAAAGAAGGTTGGTGGGCTATTCATTTGCACCGAGTTCACCTCATA---------ACACTTGTGCTCTATTTTGACTT
ACTAGGACAATTTTT--CTCCTCTAAATCAATAACGACACAACATCTCTATTTAGACAAAAGGCATCTTCCCATATG-TA
AAGCCTCGAAAAGACTCGATGAATGGTTTCACACACACAGATCTAAGCACACATTGAGAGAGAGAGAGAGAGAGAGAGAG
AGAGAGAGAGAGAGA----------------------------------------------------GAGAGAGAGAGAG
AGATCTAAGCACATTGAGCAACCTGACACCAACATTTGCCATCTCCAATGAAGACTTGTCCTCCCTCTTCACTGATTGGA
CCAAAGCTACATAAACATAAGTATTCTA--AATAAGCAATCAACCTGTTGATTAGGGATAATCTAGTCATGTTGCTAACC
T
>SNPs
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-----------------S---------------------------------S----------------------------
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-------------------------S------------------------------------------------------
--------------------------------------------------------------------------S-----
-----------------------------------------------------------------------------S--
-------------------------S-----------------------S------------------------------
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-------S--------------------S-----------------------------------S---------------
------------------S----------------------------------------------------S--------
----------------S--------SSSSSSS--------S--S-----------S--S-S---------------S---
-----S----------------------SS--------------------------------------------------
----------S-----------------S--S------------------S---------------------S-------
----------S-------S-----------------------------------S-------------------S--S--
------S-------------------------------------------------------------------------
----------------------------------S----------S----------------------------------
--S-S---------------------------------------------------------------------------
------------------------S--S----------------------------S-----------------------
-----------S--------------------------------------------------------------------
SS------------------------S----------------------------S---------------------S--
-------S------------------------------------------------------------------------
-----------------------------------------------------------------S--------------
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----------------S----S----------------------------------------------------------
-------------------------------------------------S------------------------------
----S-----------------------------S---------------------------------------------
------------------------------------------S---S--S----SS---S-S-S-S-S-S-S-S-S----
-----------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---------------
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S---------------------------SS--------------------------------------------------
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>forward_506
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-------CTTCGCCGGAGTCGATGAG------------------------------------------------------
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>reverse_1388
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---------------------------CCTTGATCTGTCGGCTGGTC---------------------------------
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