Multiple sequence alignment - TraesCS6A01G099800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G099800 chr6A 100.000 3814 0 0 1 3814 67371332 67375145 0.000000e+00 7044.0
1 TraesCS6A01G099800 chr6D 89.414 1672 115 30 212 1856 47807027 47805391 0.000000e+00 2050.0
2 TraesCS6A01G099800 chr6D 86.814 1130 78 34 1867 2963 47805345 47804254 0.000000e+00 1195.0
3 TraesCS6A01G099800 chr6D 86.780 590 48 10 3230 3814 47792294 47791730 6.950000e-177 630.0
4 TraesCS6A01G099800 chr6D 83.200 250 30 11 3008 3253 47792581 47792340 6.410000e-53 219.0
5 TraesCS6A01G099800 chr6B 86.920 1682 127 54 232 1857 123737474 123739118 0.000000e+00 1801.0
6 TraesCS6A01G099800 chr6B 89.700 767 64 12 3052 3814 123747343 123748098 0.000000e+00 965.0
7 TraesCS6A01G099800 chr6B 85.697 832 53 30 2134 2942 123745944 123746732 0.000000e+00 817.0
8 TraesCS6A01G099800 chr6B 91.892 222 11 3 1867 2083 123739163 123739382 1.720000e-78 303.0
9 TraesCS6A01G099800 chr6B 92.611 203 15 0 11 213 62761656 62761858 3.730000e-75 292.0
10 TraesCS6A01G099800 chr6B 94.086 186 11 0 29 214 8131927 8131742 2.240000e-72 283.0
11 TraesCS6A01G099800 chr6B 94.083 169 8 2 47 214 117909920 117910087 4.890000e-64 255.0
12 TraesCS6A01G099800 chr6B 100.000 30 0 0 9 38 8131966 8131937 5.320000e-04 56.5
13 TraesCS6A01G099800 chr5A 87.771 507 43 15 951 1454 471709502 471709012 3.300000e-160 575.0
14 TraesCS6A01G099800 chr5A 86.717 399 52 1 2416 2814 471708234 471707837 3.500000e-120 442.0
15 TraesCS6A01G099800 chr5B 89.027 401 44 0 2414 2814 437925758 437925358 7.360000e-137 497.0
16 TraesCS6A01G099800 chr5B 85.276 326 33 12 963 1287 437926772 437926461 4.750000e-84 322.0
17 TraesCS6A01G099800 chr5D 87.500 408 49 1 2416 2823 369306047 369305642 1.600000e-128 470.0
18 TraesCS6A01G099800 chr5D 91.000 200 18 0 12 211 476453315 476453514 1.750000e-68 270.0
19 TraesCS6A01G099800 chr3A 94.054 185 11 0 29 213 129473921 129473737 8.070000e-72 281.0
20 TraesCS6A01G099800 chr3A 75.949 316 64 9 2414 2726 740882708 740883014 6.600000e-33 152.0
21 TraesCS6A01G099800 chr7B 91.262 206 16 1 11 214 17689655 17689450 2.900000e-71 279.0
22 TraesCS6A01G099800 chr3B 92.784 194 13 1 29 222 167963922 167964114 2.900000e-71 279.0
23 TraesCS6A01G099800 chr2B 93.548 186 12 0 29 214 672040512 672040697 1.040000e-70 278.0
24 TraesCS6A01G099800 chr2B 90.909 198 18 0 17 214 92790615 92790418 2.260000e-67 267.0
25 TraesCS6A01G099800 chr3D 90.686 204 18 1 13 215 124917974 124918177 1.750000e-68 270.0
26 TraesCS6A01G099800 chr4B 88.690 168 18 1 47 214 95865756 95865590 1.800000e-48 204.0
27 TraesCS6A01G099800 chr2A 86.792 159 19 2 55 212 1890746 1890903 3.920000e-40 176.0
28 TraesCS6A01G099800 chr7A 80.631 222 24 8 2051 2258 21001120 21000904 1.830000e-33 154.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G099800 chr6A 67371332 67375145 3813 False 7044.0 7044 100.0000 1 3814 1 chr6A.!!$F1 3813
1 TraesCS6A01G099800 chr6D 47804254 47807027 2773 True 1622.5 2050 88.1140 212 2963 2 chr6D.!!$R2 2751
2 TraesCS6A01G099800 chr6D 47791730 47792581 851 True 424.5 630 84.9900 3008 3814 2 chr6D.!!$R1 806
3 TraesCS6A01G099800 chr6B 123737474 123739382 1908 False 1052.0 1801 89.4060 232 2083 2 chr6B.!!$F3 1851
4 TraesCS6A01G099800 chr6B 123745944 123748098 2154 False 891.0 965 87.6985 2134 3814 2 chr6B.!!$F4 1680
5 TraesCS6A01G099800 chr5A 471707837 471709502 1665 True 508.5 575 87.2440 951 2814 2 chr5A.!!$R1 1863
6 TraesCS6A01G099800 chr5B 437925358 437926772 1414 True 409.5 497 87.1515 963 2814 2 chr5B.!!$R1 1851

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
637 652 0.041535 TCCCGGCCTACTTCCACTAA 59.958 55.0 0.0 0.0 0.00 2.24 F
2044 2240 0.099082 CGCCGGTAAGAGAGACTCAC 59.901 60.0 1.9 0.0 32.06 3.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2397 2632 0.179156 GCAATGCCAATGTCGACAGG 60.179 55.0 24.41 20.53 0.00 4.00 R
3251 4090 0.109597 CATTTGTGCGCAGGGAACTC 60.110 55.0 12.22 0.00 40.21 3.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 4.439253 GTCATCCTAATAAGGCCCAGTT 57.561 45.455 0.00 0.00 43.31 3.16
22 23 4.390264 GTCATCCTAATAAGGCCCAGTTC 58.610 47.826 0.00 0.00 43.31 3.01
23 24 4.103311 GTCATCCTAATAAGGCCCAGTTCT 59.897 45.833 0.00 0.00 43.31 3.01
24 25 4.726825 TCATCCTAATAAGGCCCAGTTCTT 59.273 41.667 0.00 0.00 43.31 2.52
25 26 5.193728 TCATCCTAATAAGGCCCAGTTCTTT 59.806 40.000 0.00 0.00 43.31 2.52
26 27 5.530176 TCCTAATAAGGCCCAGTTCTTTT 57.470 39.130 0.00 0.00 43.31 2.27
28 29 3.961480 AATAAGGCCCAGTTCTTTTGC 57.039 42.857 0.00 0.00 0.00 3.68
31 32 0.829182 AGGCCCAGTTCTTTTGCCAG 60.829 55.000 0.00 0.00 44.60 4.85
32 33 0.827507 GGCCCAGTTCTTTTGCCAGA 60.828 55.000 0.00 0.00 41.76 3.86
33 34 1.039856 GCCCAGTTCTTTTGCCAGAA 58.960 50.000 0.00 0.00 0.00 3.02
34 35 1.620323 GCCCAGTTCTTTTGCCAGAAT 59.380 47.619 0.00 0.00 35.23 2.40
35 36 2.353109 GCCCAGTTCTTTTGCCAGAATC 60.353 50.000 0.00 0.00 35.23 2.52
36 37 3.160269 CCCAGTTCTTTTGCCAGAATCT 58.840 45.455 0.00 0.00 35.23 2.40
37 38 3.057033 CCCAGTTCTTTTGCCAGAATCTG 60.057 47.826 2.68 2.68 35.23 2.90
38 39 3.822735 CCAGTTCTTTTGCCAGAATCTGA 59.177 43.478 12.53 0.00 35.79 3.27
39 40 4.320788 CCAGTTCTTTTGCCAGAATCTGAC 60.321 45.833 12.53 0.00 35.79 3.51
40 41 3.823304 AGTTCTTTTGCCAGAATCTGACC 59.177 43.478 12.53 2.97 35.23 4.02
41 42 2.795329 TCTTTTGCCAGAATCTGACCC 58.205 47.619 12.53 0.41 32.44 4.46
42 43 1.821136 CTTTTGCCAGAATCTGACCCC 59.179 52.381 12.53 0.00 32.44 4.95
43 44 1.075601 TTTGCCAGAATCTGACCCCT 58.924 50.000 12.53 0.00 32.44 4.79
44 45 1.965414 TTGCCAGAATCTGACCCCTA 58.035 50.000 12.53 0.00 32.44 3.53
45 46 2.196742 TGCCAGAATCTGACCCCTAT 57.803 50.000 12.53 0.00 32.44 2.57
46 47 2.050144 TGCCAGAATCTGACCCCTATC 58.950 52.381 12.53 0.00 32.44 2.08
47 48 1.349357 GCCAGAATCTGACCCCTATCC 59.651 57.143 12.53 0.00 32.44 2.59
48 49 2.694397 CCAGAATCTGACCCCTATCCA 58.306 52.381 12.53 0.00 32.44 3.41
49 50 2.636893 CCAGAATCTGACCCCTATCCAG 59.363 54.545 12.53 0.00 32.44 3.86
50 51 2.038295 CAGAATCTGACCCCTATCCAGC 59.962 54.545 3.77 0.00 32.44 4.85
51 52 2.090267 AGAATCTGACCCCTATCCAGCT 60.090 50.000 0.00 0.00 0.00 4.24
52 53 2.503869 ATCTGACCCCTATCCAGCTT 57.496 50.000 0.00 0.00 0.00 3.74
53 54 1.794714 TCTGACCCCTATCCAGCTTC 58.205 55.000 0.00 0.00 0.00 3.86
54 55 1.292242 TCTGACCCCTATCCAGCTTCT 59.708 52.381 0.00 0.00 0.00 2.85
55 56 1.691434 CTGACCCCTATCCAGCTTCTC 59.309 57.143 0.00 0.00 0.00 2.87
56 57 1.052617 GACCCCTATCCAGCTTCTCC 58.947 60.000 0.00 0.00 0.00 3.71
57 58 0.400670 ACCCCTATCCAGCTTCTCCC 60.401 60.000 0.00 0.00 0.00 4.30
58 59 0.400525 CCCCTATCCAGCTTCTCCCA 60.401 60.000 0.00 0.00 0.00 4.37
59 60 1.055040 CCCTATCCAGCTTCTCCCAG 58.945 60.000 0.00 0.00 0.00 4.45
60 61 1.413662 CCCTATCCAGCTTCTCCCAGA 60.414 57.143 0.00 0.00 0.00 3.86
61 62 2.402564 CCTATCCAGCTTCTCCCAGAA 58.597 52.381 0.00 0.00 32.50 3.02
62 63 2.978278 CCTATCCAGCTTCTCCCAGAAT 59.022 50.000 0.00 0.00 33.13 2.40
63 64 3.007831 CCTATCCAGCTTCTCCCAGAATC 59.992 52.174 0.00 0.00 33.13 2.52
64 65 2.260639 TCCAGCTTCTCCCAGAATCT 57.739 50.000 0.00 0.00 33.13 2.40
65 66 2.555664 TCCAGCTTCTCCCAGAATCTT 58.444 47.619 0.00 0.00 33.13 2.40
66 67 2.915604 TCCAGCTTCTCCCAGAATCTTT 59.084 45.455 0.00 0.00 33.13 2.52
67 68 3.015327 CCAGCTTCTCCCAGAATCTTTG 58.985 50.000 0.00 0.00 33.13 2.77
68 69 3.307975 CCAGCTTCTCCCAGAATCTTTGA 60.308 47.826 0.00 0.00 33.13 2.69
69 70 3.940221 CAGCTTCTCCCAGAATCTTTGAG 59.060 47.826 0.00 0.62 33.13 3.02
70 71 2.682352 GCTTCTCCCAGAATCTTTGAGC 59.318 50.000 1.93 0.00 33.13 4.26
71 72 3.277715 CTTCTCCCAGAATCTTTGAGCC 58.722 50.000 1.93 0.00 33.13 4.70
72 73 2.555664 TCTCCCAGAATCTTTGAGCCT 58.444 47.619 1.93 0.00 0.00 4.58
73 74 2.503356 TCTCCCAGAATCTTTGAGCCTC 59.497 50.000 1.93 0.00 0.00 4.70
74 75 2.238144 CTCCCAGAATCTTTGAGCCTCA 59.762 50.000 0.00 0.00 0.00 3.86
75 76 2.848694 TCCCAGAATCTTTGAGCCTCAT 59.151 45.455 0.00 0.00 0.00 2.90
76 77 3.267812 TCCCAGAATCTTTGAGCCTCATT 59.732 43.478 0.00 0.00 0.00 2.57
77 78 4.021916 CCCAGAATCTTTGAGCCTCATTT 58.978 43.478 0.00 0.00 0.00 2.32
78 79 4.465305 CCCAGAATCTTTGAGCCTCATTTT 59.535 41.667 0.00 0.00 0.00 1.82
79 80 5.046807 CCCAGAATCTTTGAGCCTCATTTTT 60.047 40.000 0.00 0.00 0.00 1.94
105 106 9.725206 TTTTACAATCCTATCTAGTTAGGGTCT 57.275 33.333 21.70 9.96 39.45 3.85
109 110 9.900112 ACAATCCTATCTAGTTAGGGTCTAATT 57.100 33.333 21.70 13.14 39.45 1.40
132 133 9.927668 AATTAGACAGGATTGTAAAACAAATGG 57.072 29.630 0.00 0.00 41.96 3.16
133 134 6.345096 AGACAGGATTGTAAAACAAATGGG 57.655 37.500 0.00 0.00 41.96 4.00
134 135 6.074648 AGACAGGATTGTAAAACAAATGGGA 58.925 36.000 0.00 0.00 41.96 4.37
135 136 6.015434 AGACAGGATTGTAAAACAAATGGGAC 60.015 38.462 0.00 0.00 41.96 4.46
136 137 5.838521 ACAGGATTGTAAAACAAATGGGACT 59.161 36.000 0.00 0.00 41.96 3.85
137 138 6.158598 CAGGATTGTAAAACAAATGGGACTG 58.841 40.000 0.00 0.00 41.96 3.51
138 139 6.015519 CAGGATTGTAAAACAAATGGGACTGA 60.016 38.462 0.00 0.00 41.96 3.41
139 140 6.553100 AGGATTGTAAAACAAATGGGACTGAA 59.447 34.615 0.00 0.00 41.96 3.02
140 141 7.070571 AGGATTGTAAAACAAATGGGACTGAAA 59.929 33.333 0.00 0.00 41.96 2.69
141 142 7.384932 GGATTGTAAAACAAATGGGACTGAAAG 59.615 37.037 0.00 0.00 41.96 2.62
142 143 7.411486 TTGTAAAACAAATGGGACTGAAAGA 57.589 32.000 0.00 0.00 34.76 2.52
143 144 7.595819 TGTAAAACAAATGGGACTGAAAGAT 57.404 32.000 0.00 0.00 37.43 2.40
144 145 8.017418 TGTAAAACAAATGGGACTGAAAGATT 57.983 30.769 0.00 0.00 37.43 2.40
145 146 8.141268 TGTAAAACAAATGGGACTGAAAGATTC 58.859 33.333 0.00 0.00 37.43 2.52
146 147 6.983906 AAACAAATGGGACTGAAAGATTCT 57.016 33.333 0.00 0.00 37.43 2.40
147 148 5.972107 ACAAATGGGACTGAAAGATTCTG 57.028 39.130 0.00 0.00 37.43 3.02
148 149 4.768968 ACAAATGGGACTGAAAGATTCTGG 59.231 41.667 0.00 0.00 37.43 3.86
149 150 3.659183 ATGGGACTGAAAGATTCTGGG 57.341 47.619 0.00 0.00 37.43 4.45
150 151 2.631384 TGGGACTGAAAGATTCTGGGA 58.369 47.619 0.00 0.00 37.43 4.37
151 152 2.573462 TGGGACTGAAAGATTCTGGGAG 59.427 50.000 0.00 0.00 37.43 4.30
152 153 2.840651 GGGACTGAAAGATTCTGGGAGA 59.159 50.000 0.00 0.00 37.43 3.71
153 154 3.264450 GGGACTGAAAGATTCTGGGAGAA 59.736 47.826 0.00 0.00 36.48 2.87
154 155 4.512484 GGACTGAAAGATTCTGGGAGAAG 58.488 47.826 0.00 0.00 35.78 2.85
155 156 3.938334 GACTGAAAGATTCTGGGAGAAGC 59.062 47.826 0.00 0.00 40.68 3.86
159 160 3.796764 GATTCTGGGAGAAGCTGGG 57.203 57.895 0.00 0.00 37.62 4.45
160 161 0.915364 GATTCTGGGAGAAGCTGGGT 59.085 55.000 0.00 0.00 37.62 4.51
161 162 2.119495 GATTCTGGGAGAAGCTGGGTA 58.881 52.381 0.00 0.00 37.62 3.69
162 163 1.573108 TTCTGGGAGAAGCTGGGTAG 58.427 55.000 0.00 0.00 29.50 3.18
163 164 0.325671 TCTGGGAGAAGCTGGGTAGG 60.326 60.000 0.00 0.00 0.00 3.18
164 165 1.306997 TGGGAGAAGCTGGGTAGGG 60.307 63.158 0.00 0.00 0.00 3.53
165 166 1.003051 GGGAGAAGCTGGGTAGGGA 59.997 63.158 0.00 0.00 0.00 4.20
166 167 0.400670 GGGAGAAGCTGGGTAGGGAT 60.401 60.000 0.00 0.00 0.00 3.85
167 168 1.052617 GGAGAAGCTGGGTAGGGATC 58.947 60.000 0.00 0.00 0.00 3.36
168 169 0.676736 GAGAAGCTGGGTAGGGATCG 59.323 60.000 0.00 0.00 0.00 3.69
169 170 0.261991 AGAAGCTGGGTAGGGATCGA 59.738 55.000 0.00 0.00 0.00 3.59
170 171 1.120530 GAAGCTGGGTAGGGATCGAA 58.879 55.000 0.00 0.00 0.00 3.71
171 172 1.694696 GAAGCTGGGTAGGGATCGAAT 59.305 52.381 0.00 0.00 0.00 3.34
172 173 1.807814 AGCTGGGTAGGGATCGAATT 58.192 50.000 0.00 0.00 0.00 2.17
173 174 1.694696 AGCTGGGTAGGGATCGAATTC 59.305 52.381 0.00 0.00 0.00 2.17
174 175 1.694696 GCTGGGTAGGGATCGAATTCT 59.305 52.381 3.52 0.00 0.00 2.40
175 176 2.548920 GCTGGGTAGGGATCGAATTCTG 60.549 54.545 3.52 0.00 0.00 3.02
176 177 2.037772 CTGGGTAGGGATCGAATTCTGG 59.962 54.545 3.52 0.00 0.00 3.86
177 178 2.326428 GGGTAGGGATCGAATTCTGGA 58.674 52.381 3.52 0.00 0.00 3.86
178 179 2.704065 GGGTAGGGATCGAATTCTGGAA 59.296 50.000 3.52 0.00 0.00 3.53
179 180 3.244249 GGGTAGGGATCGAATTCTGGAAG 60.244 52.174 3.52 0.00 0.00 3.46
180 181 3.641906 GGTAGGGATCGAATTCTGGAAGA 59.358 47.826 3.52 0.00 44.68 2.87
206 207 4.170292 CCAGATTCTGGCAAAAGAACTG 57.830 45.455 19.49 12.95 45.13 3.16
207 208 3.057033 CCAGATTCTGGCAAAAGAACTGG 60.057 47.826 19.49 18.64 45.13 4.00
208 209 3.057033 CAGATTCTGGCAAAAGAACTGGG 60.057 47.826 5.73 0.00 38.95 4.45
209 210 1.039856 TTCTGGCAAAAGAACTGGGC 58.960 50.000 0.00 0.00 31.19 5.36
210 211 0.827507 TCTGGCAAAAGAACTGGGCC 60.828 55.000 0.00 0.00 44.82 5.80
211 212 0.829182 CTGGCAAAAGAACTGGGCCT 60.829 55.000 4.53 0.00 44.85 5.19
212 213 0.480690 TGGCAAAAGAACTGGGCCTA 59.519 50.000 4.53 0.00 44.85 3.93
213 214 1.133325 TGGCAAAAGAACTGGGCCTAA 60.133 47.619 4.53 0.00 44.85 2.69
214 215 2.179427 GGCAAAAGAACTGGGCCTAAT 58.821 47.619 4.53 0.00 41.39 1.73
215 216 2.567169 GGCAAAAGAACTGGGCCTAATT 59.433 45.455 4.53 0.00 41.39 1.40
216 217 3.368427 GGCAAAAGAACTGGGCCTAATTC 60.368 47.826 1.48 1.48 41.39 2.17
217 218 3.368427 GCAAAAGAACTGGGCCTAATTCC 60.368 47.826 6.69 0.00 0.00 3.01
218 219 4.089361 CAAAAGAACTGGGCCTAATTCCT 58.911 43.478 6.69 0.00 0.00 3.36
219 220 4.404185 AAAGAACTGGGCCTAATTCCTT 57.596 40.909 6.69 0.00 0.00 3.36
220 221 3.653835 AGAACTGGGCCTAATTCCTTC 57.346 47.619 6.69 0.00 0.00 3.46
266 272 0.681175 GGACCAAAATGCTGCACCTT 59.319 50.000 3.57 0.00 0.00 3.50
275 281 5.573337 AAATGCTGCACCTTTTCTCTATC 57.427 39.130 3.57 0.00 0.00 2.08
279 285 2.941720 CTGCACCTTTTCTCTATCTGCC 59.058 50.000 0.00 0.00 0.00 4.85
345 351 4.289245 CCCACGGTCACGGACGTT 62.289 66.667 0.00 0.00 46.48 3.99
361 370 3.000376 GGACGTTCGTCGGATTTATCAAC 60.000 47.826 17.03 0.00 44.69 3.18
362 371 3.841643 ACGTTCGTCGGATTTATCAACT 58.158 40.909 7.51 0.00 44.69 3.16
384 393 4.488126 TTAAGCAATTCTGTGAGTGTGC 57.512 40.909 0.00 0.00 0.00 4.57
439 448 6.434028 CCAGGAGGAAAATGACATACAGAAAA 59.566 38.462 0.00 0.00 36.89 2.29
459 468 0.179215 CGATGCAAAAGTGTCGAGCC 60.179 55.000 0.00 0.00 36.25 4.70
474 483 0.737715 GAGCCTCGCCAAGTGTGTAG 60.738 60.000 0.00 0.00 0.00 2.74
476 485 0.602905 GCCTCGCCAAGTGTGTAGTT 60.603 55.000 0.00 0.00 0.00 2.24
509 523 4.284550 GGCACAGGTCCAAGGCCA 62.285 66.667 5.01 0.00 44.01 5.36
534 548 2.892425 GGAGACGCAATCAGCCCG 60.892 66.667 0.00 0.00 41.38 6.13
535 549 2.184322 GAGACGCAATCAGCCCGA 59.816 61.111 0.00 0.00 41.38 5.14
536 550 1.447838 GAGACGCAATCAGCCCGAA 60.448 57.895 0.00 0.00 41.38 4.30
537 551 1.696832 GAGACGCAATCAGCCCGAAC 61.697 60.000 0.00 0.00 41.38 3.95
538 552 3.083600 GACGCAATCAGCCCGAACG 62.084 63.158 0.00 0.00 41.38 3.95
637 652 0.041535 TCCCGGCCTACTTCCACTAA 59.958 55.000 0.00 0.00 0.00 2.24
638 653 0.906775 CCCGGCCTACTTCCACTAAA 59.093 55.000 0.00 0.00 0.00 1.85
646 661 4.620097 GCCTACTTCCACTAAAACGTAGCT 60.620 45.833 0.00 0.00 0.00 3.32
660 675 2.989881 TAGCTCACGCTCCACACCG 61.990 63.158 0.00 0.00 45.15 4.94
668 683 3.625897 CTCCACACCGCCCACTGA 61.626 66.667 0.00 0.00 0.00 3.41
717 734 2.890474 GTCGGTGCCTACATGCGG 60.890 66.667 0.00 0.00 0.00 5.69
718 735 4.155733 TCGGTGCCTACATGCGGG 62.156 66.667 0.00 0.00 0.00 6.13
724 741 2.469516 GCCTACATGCGGGGAAACG 61.470 63.158 6.67 0.00 0.00 3.60
738 755 0.108520 GAAACGCCGGGTGAGTATGA 60.109 55.000 15.77 0.00 0.00 2.15
744 761 1.605753 CCGGGTGAGTATGATCTCGA 58.394 55.000 0.00 0.00 37.28 4.04
771 791 0.250124 CGTGCCAGTACAAAGTGGGA 60.250 55.000 0.00 0.00 45.20 4.37
772 792 1.523758 GTGCCAGTACAAAGTGGGAG 58.476 55.000 0.00 0.00 46.20 4.30
773 793 1.136828 TGCCAGTACAAAGTGGGAGT 58.863 50.000 0.00 0.00 45.20 3.85
800 822 1.379176 TCTGCCCCACGAGAGAGAG 60.379 63.158 0.00 0.00 0.00 3.20
1152 1181 2.668550 GAAAAGCCGGACCTGCGT 60.669 61.111 5.05 0.00 0.00 5.24
1371 1400 3.155167 CCCTCCAGCGAGTACCCC 61.155 72.222 0.00 0.00 33.93 4.95
1661 1775 9.630098 CTATTGTTTGTTATGAAGACATTTGCT 57.370 29.630 0.00 0.00 37.87 3.91
1663 1777 9.630098 ATTGTTTGTTATGAAGACATTTGCTAG 57.370 29.630 0.00 0.00 37.87 3.42
1680 1795 7.553881 TTTGCTAGTATGCTTAATTCCTGAC 57.446 36.000 0.00 0.00 0.00 3.51
1692 1807 7.933577 TGCTTAATTCCTGACGATCTTGATTAT 59.066 33.333 0.00 0.00 0.00 1.28
1701 1846 9.360093 CCTGACGATCTTGATTATATTCTTACC 57.640 37.037 0.00 0.00 0.00 2.85
1724 1878 6.183360 ACCGATCTTAATCTCCTGTCTACAAC 60.183 42.308 0.00 0.00 0.00 3.32
1755 1909 3.333219 TGGAGGAGGGCAAGCTGG 61.333 66.667 0.00 0.00 0.00 4.85
1786 1940 3.081133 CAACGGCTCGGATCAACG 58.919 61.111 0.00 0.00 0.00 4.10
1849 2010 0.819259 TGCTTTGTGACAGTCAGGCC 60.819 55.000 2.53 0.00 0.00 5.19
1857 2018 1.507141 GACAGTCAGGCCACCAAACG 61.507 60.000 5.01 0.00 0.00 3.60
1858 2019 1.227823 CAGTCAGGCCACCAAACGA 60.228 57.895 5.01 0.00 0.00 3.85
1859 2020 0.817634 CAGTCAGGCCACCAAACGAA 60.818 55.000 5.01 0.00 0.00 3.85
1860 2021 0.106918 AGTCAGGCCACCAAACGAAA 60.107 50.000 5.01 0.00 0.00 3.46
1864 2025 0.106918 AGGCCACCAAACGAAACTGA 60.107 50.000 5.01 0.00 0.00 3.41
1865 2026 0.958822 GGCCACCAAACGAAACTGAT 59.041 50.000 0.00 0.00 0.00 2.90
1878 2074 3.744660 GAAACTGATCTTGGTGGTGTCT 58.255 45.455 0.00 0.00 0.00 3.41
2044 2240 0.099082 CGCCGGTAAGAGAGACTCAC 59.901 60.000 1.90 0.00 32.06 3.51
2067 2268 2.803956 ACGTCGTTGAATCGTCCAAAAT 59.196 40.909 0.00 0.00 32.26 1.82
2076 2277 7.253950 CGTTGAATCGTCCAAAATTTTTGACTT 60.254 33.333 24.55 16.67 32.44 3.01
2083 2284 6.144402 CGTCCAAAATTTTTGACTTCCATGAG 59.856 38.462 24.55 9.51 32.44 2.90
2084 2285 7.209475 GTCCAAAATTTTTGACTTCCATGAGA 58.791 34.615 21.79 5.11 32.04 3.27
2095 2298 6.226787 TGACTTCCATGAGAAAGAAGAAGAC 58.773 40.000 13.52 7.35 39.50 3.01
2125 2328 1.272490 TCATGTCTCGACCACTGGTTC 59.728 52.381 1.13 0.00 35.25 3.62
2126 2329 0.243907 ATGTCTCGACCACTGGTTCG 59.756 55.000 1.13 7.81 35.25 3.95
2130 2333 0.109412 CTCGACCACTGGTTCGGTAC 60.109 60.000 15.61 0.00 35.25 3.34
2176 2399 4.690748 TCAATCAACTCTGAAACCGACATC 59.309 41.667 0.00 0.00 34.49 3.06
2204 2427 1.202582 TCTTAGCCAGCTTCGTCTCAC 59.797 52.381 0.00 0.00 0.00 3.51
2206 2429 1.257743 TAGCCAGCTTCGTCTCACTT 58.742 50.000 0.00 0.00 0.00 3.16
2238 2461 7.503521 TGTCATGCATACTTTTACTTGTTCA 57.496 32.000 0.00 0.00 0.00 3.18
2257 2480 5.824904 TTCAAGCCTTTGAATAGATGCTC 57.175 39.130 0.00 0.00 45.77 4.26
2258 2481 4.202441 TCAAGCCTTTGAATAGATGCTCC 58.798 43.478 0.00 0.00 40.26 4.70
2259 2482 3.939740 AGCCTTTGAATAGATGCTCCA 57.060 42.857 0.00 0.00 0.00 3.86
2260 2483 3.818180 AGCCTTTGAATAGATGCTCCAG 58.182 45.455 0.00 0.00 0.00 3.86
2261 2484 3.201708 AGCCTTTGAATAGATGCTCCAGT 59.798 43.478 0.00 0.00 0.00 4.00
2262 2485 3.563390 GCCTTTGAATAGATGCTCCAGTC 59.437 47.826 0.00 0.00 0.00 3.51
2291 2514 3.986006 AACTTCCTCGCGCGTCCA 61.986 61.111 30.98 9.98 0.00 4.02
2293 2516 2.509336 CTTCCTCGCGCGTCCATT 60.509 61.111 30.98 0.00 0.00 3.16
2296 2519 2.572095 TTCCTCGCGCGTCCATTGAT 62.572 55.000 30.98 0.00 0.00 2.57
2319 2546 4.022935 TGTCCACTTCAATCAGCATTTCAC 60.023 41.667 0.00 0.00 0.00 3.18
2320 2547 4.022935 GTCCACTTCAATCAGCATTTCACA 60.023 41.667 0.00 0.00 0.00 3.58
2332 2559 5.100259 CAGCATTTCACAGATTCCATTGAC 58.900 41.667 0.00 0.00 0.00 3.18
2347 2575 8.831715 ATTCCATTGACATTAACCAGAAAAAC 57.168 30.769 0.00 0.00 0.00 2.43
2349 2577 7.432869 TCCATTGACATTAACCAGAAAAACAG 58.567 34.615 0.00 0.00 0.00 3.16
2353 2581 9.883142 ATTGACATTAACCAGAAAAACAGAAAA 57.117 25.926 0.00 0.00 0.00 2.29
2357 2585 7.931407 ACATTAACCAGAAAAACAGAAAATCCC 59.069 33.333 0.00 0.00 0.00 3.85
2358 2586 5.948742 AACCAGAAAAACAGAAAATCCCA 57.051 34.783 0.00 0.00 0.00 4.37
2390 2625 8.198109 TCAATCTTCCTACAGTTCTAACTATGC 58.802 37.037 0.00 0.00 37.08 3.14
2391 2626 7.906199 ATCTTCCTACAGTTCTAACTATGCT 57.094 36.000 0.00 0.00 37.08 3.79
2392 2627 7.719871 TCTTCCTACAGTTCTAACTATGCTT 57.280 36.000 0.00 0.00 37.08 3.91
2393 2628 7.548097 TCTTCCTACAGTTCTAACTATGCTTG 58.452 38.462 0.00 0.00 37.08 4.01
2394 2629 5.661458 TCCTACAGTTCTAACTATGCTTGC 58.339 41.667 0.00 0.00 37.08 4.01
2395 2630 4.504461 CCTACAGTTCTAACTATGCTTGCG 59.496 45.833 0.00 0.00 37.08 4.85
2396 2631 4.188247 ACAGTTCTAACTATGCTTGCGA 57.812 40.909 0.00 0.00 37.08 5.10
2397 2632 3.927142 ACAGTTCTAACTATGCTTGCGAC 59.073 43.478 0.00 0.00 37.08 5.19
2398 2633 3.307242 CAGTTCTAACTATGCTTGCGACC 59.693 47.826 0.00 0.00 37.08 4.79
2399 2634 3.195825 AGTTCTAACTATGCTTGCGACCT 59.804 43.478 0.00 0.00 37.52 3.85
2400 2635 3.165058 TCTAACTATGCTTGCGACCTG 57.835 47.619 0.00 0.00 0.00 4.00
2401 2636 2.496070 TCTAACTATGCTTGCGACCTGT 59.504 45.455 0.00 0.00 0.00 4.00
2402 2637 1.726853 AACTATGCTTGCGACCTGTC 58.273 50.000 0.00 0.00 0.00 3.51
2819 3054 4.865629 TGGGACACCTGATCGTCT 57.134 55.556 0.00 0.00 37.76 4.18
2820 3055 2.276869 TGGGACACCTGATCGTCTG 58.723 57.895 0.00 0.00 37.76 3.51
2821 3056 0.251608 TGGGACACCTGATCGTCTGA 60.252 55.000 0.00 0.00 37.76 3.27
2822 3057 0.895530 GGGACACCTGATCGTCTGAA 59.104 55.000 0.00 0.00 32.57 3.02
2823 3058 1.134965 GGGACACCTGATCGTCTGAAG 60.135 57.143 0.00 0.00 32.57 3.02
2824 3059 1.546476 GGACACCTGATCGTCTGAAGT 59.454 52.381 0.00 0.00 32.57 3.01
2826 3061 3.192844 GGACACCTGATCGTCTGAAGTTA 59.807 47.826 0.00 0.00 32.57 2.24
2827 3062 4.167268 GACACCTGATCGTCTGAAGTTAC 58.833 47.826 0.00 0.00 0.00 2.50
2829 3064 4.220821 ACACCTGATCGTCTGAAGTTACAT 59.779 41.667 0.00 0.00 0.00 2.29
2830 3065 4.564372 CACCTGATCGTCTGAAGTTACATG 59.436 45.833 0.00 0.00 0.00 3.21
2850 3097 4.120946 TGGGGCTGGTTTGTTAATTAGT 57.879 40.909 0.00 0.00 0.00 2.24
2869 3116 4.720530 AGTTTTGGACGTTCGTTCATAC 57.279 40.909 7.16 8.70 0.00 2.39
2870 3117 4.374399 AGTTTTGGACGTTCGTTCATACT 58.626 39.130 7.16 10.55 0.00 2.12
2871 3118 4.210537 AGTTTTGGACGTTCGTTCATACTG 59.789 41.667 15.77 0.00 0.00 2.74
2872 3119 3.374220 TTGGACGTTCGTTCATACTGT 57.626 42.857 7.16 0.00 0.00 3.55
2873 3120 4.502171 TTGGACGTTCGTTCATACTGTA 57.498 40.909 7.16 0.00 0.00 2.74
2874 3121 4.087510 TGGACGTTCGTTCATACTGTAG 57.912 45.455 1.96 0.00 0.00 2.74
2875 3122 3.503363 TGGACGTTCGTTCATACTGTAGT 59.497 43.478 1.96 0.00 0.00 2.73
2876 3123 4.694982 TGGACGTTCGTTCATACTGTAGTA 59.305 41.667 1.96 0.00 34.67 1.82
2899 3146 8.880244 AGTATATTTCATAGTGCAAGGATACCA 58.120 33.333 0.00 0.00 37.17 3.25
2907 3159 3.118592 AGTGCAAGGATACCAGTAGCTTC 60.119 47.826 0.00 0.00 37.17 3.86
2950 3207 5.921962 AGTACATGTGCTGTGATAAGAGA 57.078 39.130 16.23 0.00 38.92 3.10
2951 3208 6.286240 AGTACATGTGCTGTGATAAGAGAA 57.714 37.500 16.23 0.00 38.92 2.87
2987 3415 8.685838 AATACTACTAGGTGAAAAACAAGCAA 57.314 30.769 0.00 0.00 0.00 3.91
2991 3419 8.474831 ACTACTAGGTGAAAAACAAGCAAAAAT 58.525 29.630 0.00 0.00 0.00 1.82
2994 3422 6.816134 AGGTGAAAAACAAGCAAAAATGTT 57.184 29.167 0.00 0.00 41.31 2.71
3021 3449 6.528014 TTCTTGTTTATTTACGACTGCGAA 57.472 33.333 0.00 0.00 41.64 4.70
3022 3450 6.528014 TCTTGTTTATTTACGACTGCGAAA 57.472 33.333 0.00 0.00 41.64 3.46
3074 3847 8.107196 ACATCATAATCCTTCCTTTAGTTCCT 57.893 34.615 0.00 0.00 0.00 3.36
3084 3857 3.655777 TCCTTTAGTTCCTCCCACACAAT 59.344 43.478 0.00 0.00 0.00 2.71
3093 3867 3.010472 TCCTCCCACACAATCATCACAAT 59.990 43.478 0.00 0.00 0.00 2.71
3114 3888 0.245539 CCAAATGGCAGTCAAGCAGG 59.754 55.000 0.00 0.00 35.83 4.85
3118 3892 0.329261 ATGGCAGTCAAGCAGGCTAA 59.671 50.000 0.00 0.00 35.83 3.09
3124 3898 1.142870 AGTCAAGCAGGCTAACCACAA 59.857 47.619 0.00 0.00 39.06 3.33
3130 3907 1.238439 CAGGCTAACCACAACACCAG 58.762 55.000 0.00 0.00 39.06 4.00
3180 3957 1.734465 GCTCTCCAGGAATTGAACACG 59.266 52.381 0.00 0.00 0.00 4.49
3216 4051 1.196012 GACCAAACCCAAAACACCCA 58.804 50.000 0.00 0.00 0.00 4.51
3251 4090 5.120830 GGCCATAACTTACAGATATTGCTCG 59.879 44.000 0.00 0.00 27.47 5.03
3259 4098 3.034635 ACAGATATTGCTCGAGTTCCCT 58.965 45.455 15.13 1.61 0.00 4.20
3265 4104 2.811317 CTCGAGTTCCCTGCGCAC 60.811 66.667 5.66 0.00 0.00 5.34
3323 4162 1.067295 AGGAACAACAGATCAGGGCA 58.933 50.000 0.00 0.00 0.00 5.36
3398 4237 2.872557 CAGCAGCCGATGTTGTGG 59.127 61.111 0.00 0.00 35.54 4.17
3400 4239 0.673333 CAGCAGCCGATGTTGTGGTA 60.673 55.000 0.00 0.00 35.54 3.25
3404 4243 0.108138 AGCCGATGTTGTGGTAGCTC 60.108 55.000 0.00 0.00 0.00 4.09
3412 4251 2.111999 TTGTGGTAGCTCGCTTGGCT 62.112 55.000 0.00 0.00 43.02 4.75
3460 4299 1.227674 GGATCTGGGTGACGGATGC 60.228 63.158 0.00 0.00 45.22 3.91
3463 4302 4.082523 CTGGGTGACGGATGCGGT 62.083 66.667 12.44 0.00 0.00 5.68
3503 4342 2.098117 GGCATTACGCAGCTTCTCAAAT 59.902 45.455 0.00 0.00 45.17 2.32
3514 4353 3.525199 AGCTTCTCAAATATGGGGTGTCT 59.475 43.478 0.00 0.00 0.00 3.41
3528 4367 2.169561 GGGTGTCTCAGGATCTCTTTCC 59.830 54.545 0.00 0.00 35.90 3.13
3588 4427 2.303022 TGAAAGTAAGCAGAGAGTGGGG 59.697 50.000 0.00 0.00 0.00 4.96
3612 4451 4.635765 GTGAGCAAGCATGTGAAATACCTA 59.364 41.667 0.00 0.00 0.00 3.08
3616 4455 5.530171 AGCAAGCATGTGAAATACCTATCAG 59.470 40.000 0.00 0.00 0.00 2.90
3626 4466 5.602978 TGAAATACCTATCAGAAGGGAGGAC 59.397 44.000 0.00 0.00 41.32 3.85
3635 4475 4.171234 TCAGAAGGGAGGACATCTTTCTT 58.829 43.478 5.19 0.00 32.85 2.52
3655 4495 6.605471 TCTTGGACTTGAATGCTAGAGTTA 57.395 37.500 0.00 0.00 0.00 2.24
3656 4496 6.634805 TCTTGGACTTGAATGCTAGAGTTAG 58.365 40.000 0.00 0.00 0.00 2.34
3673 4513 4.407365 AGTTAGTTAAGGTGCCAAGCAAT 58.593 39.130 0.00 0.00 41.47 3.56
3697 4537 4.842029 GCAAATTGCAGCTCTGTAGATAC 58.158 43.478 13.73 0.00 44.26 2.24
3712 4552 8.392372 TCTGTAGATACGTCATAGCTGTAATT 57.608 34.615 0.00 0.00 30.30 1.40
3719 4559 4.802039 ACGTCATAGCTGTAATTGTAACGG 59.198 41.667 0.00 0.00 0.00 4.44
3722 4562 3.889780 GCTGTAATTGTAACGGCCG 57.110 52.632 26.86 26.86 42.30 6.13
3737 4577 1.644786 GGCCGTGACCCAAAGAATCG 61.645 60.000 0.00 0.00 0.00 3.34
3746 4589 4.253685 GACCCAAAGAATCGACTGAATGA 58.746 43.478 0.00 0.00 0.00 2.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 4.713792 AGAACTGGGCCTTATTAGGATG 57.286 45.455 4.53 0.00 45.05 3.51
3 4 5.734031 AAAGAACTGGGCCTTATTAGGAT 57.266 39.130 4.53 0.00 45.05 3.24
7 8 3.767131 GGCAAAAGAACTGGGCCTTATTA 59.233 43.478 4.53 0.00 41.39 0.98
8 9 2.567169 GGCAAAAGAACTGGGCCTTATT 59.433 45.455 4.53 0.00 41.39 1.40
10 11 1.133325 TGGCAAAAGAACTGGGCCTTA 60.133 47.619 4.53 0.00 44.85 2.69
11 12 0.398381 TGGCAAAAGAACTGGGCCTT 60.398 50.000 4.53 0.00 44.85 4.35
12 13 0.829182 CTGGCAAAAGAACTGGGCCT 60.829 55.000 4.53 0.00 44.85 5.19
13 14 0.827507 TCTGGCAAAAGAACTGGGCC 60.828 55.000 0.00 0.00 44.82 5.80
14 15 1.039856 TTCTGGCAAAAGAACTGGGC 58.960 50.000 0.00 0.00 31.19 5.36
16 17 3.822735 TCAGATTCTGGCAAAAGAACTGG 59.177 43.478 13.59 5.40 38.95 4.00
17 18 4.320788 GGTCAGATTCTGGCAAAAGAACTG 60.321 45.833 19.32 13.34 37.90 3.16
18 19 3.823304 GGTCAGATTCTGGCAAAAGAACT 59.177 43.478 19.32 0.00 37.90 3.01
19 20 3.057245 GGGTCAGATTCTGGCAAAAGAAC 60.057 47.826 19.32 5.17 37.90 3.01
20 21 3.157087 GGGTCAGATTCTGGCAAAAGAA 58.843 45.455 19.32 0.00 37.90 2.52
21 22 2.555227 GGGGTCAGATTCTGGCAAAAGA 60.555 50.000 19.32 0.00 37.90 2.52
22 23 1.821136 GGGGTCAGATTCTGGCAAAAG 59.179 52.381 19.32 0.00 37.90 2.27
23 24 1.428912 AGGGGTCAGATTCTGGCAAAA 59.571 47.619 19.32 0.00 37.90 2.44
24 25 1.075601 AGGGGTCAGATTCTGGCAAA 58.924 50.000 19.32 0.00 37.90 3.68
25 26 1.965414 TAGGGGTCAGATTCTGGCAA 58.035 50.000 19.32 0.00 37.90 4.52
26 27 2.050144 GATAGGGGTCAGATTCTGGCA 58.950 52.381 19.32 0.00 37.90 4.92
28 29 2.636893 CTGGATAGGGGTCAGATTCTGG 59.363 54.545 13.59 0.00 31.51 3.86
31 32 2.334023 AGCTGGATAGGGGTCAGATTC 58.666 52.381 0.00 0.00 0.00 2.52
32 33 2.503869 AGCTGGATAGGGGTCAGATT 57.496 50.000 0.00 0.00 0.00 2.40
33 34 2.090267 AGAAGCTGGATAGGGGTCAGAT 60.090 50.000 0.00 0.00 0.00 2.90
34 35 1.292242 AGAAGCTGGATAGGGGTCAGA 59.708 52.381 0.00 0.00 0.00 3.27
35 36 1.691434 GAGAAGCTGGATAGGGGTCAG 59.309 57.143 0.00 0.00 0.00 3.51
36 37 1.692762 GGAGAAGCTGGATAGGGGTCA 60.693 57.143 0.00 0.00 0.00 4.02
37 38 1.052617 GGAGAAGCTGGATAGGGGTC 58.947 60.000 0.00 0.00 0.00 4.46
38 39 0.400670 GGGAGAAGCTGGATAGGGGT 60.401 60.000 0.00 0.00 0.00 4.95
39 40 0.400525 TGGGAGAAGCTGGATAGGGG 60.401 60.000 0.00 0.00 0.00 4.79
40 41 1.055040 CTGGGAGAAGCTGGATAGGG 58.945 60.000 0.00 0.00 0.00 3.53
41 42 2.094100 TCTGGGAGAAGCTGGATAGG 57.906 55.000 0.00 0.00 0.00 2.57
42 43 4.270245 GATTCTGGGAGAAGCTGGATAG 57.730 50.000 0.00 0.00 37.62 2.08
49 50 2.682352 GCTCAAAGATTCTGGGAGAAGC 59.318 50.000 15.41 0.00 40.68 3.86
50 51 3.054508 AGGCTCAAAGATTCTGGGAGAAG 60.055 47.826 15.41 0.00 37.69 2.85
51 52 2.915604 AGGCTCAAAGATTCTGGGAGAA 59.084 45.455 15.41 0.00 38.78 2.87
52 53 2.503356 GAGGCTCAAAGATTCTGGGAGA 59.497 50.000 10.25 0.14 0.00 3.71
53 54 2.238144 TGAGGCTCAAAGATTCTGGGAG 59.762 50.000 16.28 9.42 0.00 4.30
54 55 2.269023 TGAGGCTCAAAGATTCTGGGA 58.731 47.619 16.28 0.00 0.00 4.37
55 56 2.795231 TGAGGCTCAAAGATTCTGGG 57.205 50.000 16.28 0.00 0.00 4.45
56 57 5.656213 AAAATGAGGCTCAAAGATTCTGG 57.344 39.130 22.84 0.00 0.00 3.86
79 80 9.725206 AGACCCTAACTAGATAGGATTGTAAAA 57.275 33.333 23.97 0.00 44.46 1.52
83 84 9.900112 AATTAGACCCTAACTAGATAGGATTGT 57.100 33.333 23.97 14.76 44.46 2.71
106 107 9.927668 CCATTTGTTTTACAATCCTGTCTAATT 57.072 29.630 0.00 0.00 38.00 1.40
107 108 8.531146 CCCATTTGTTTTACAATCCTGTCTAAT 58.469 33.333 0.00 0.00 38.00 1.73
108 109 7.726291 TCCCATTTGTTTTACAATCCTGTCTAA 59.274 33.333 0.00 0.00 38.00 2.10
109 110 7.175990 GTCCCATTTGTTTTACAATCCTGTCTA 59.824 37.037 0.00 0.00 38.00 2.59
110 111 6.015434 GTCCCATTTGTTTTACAATCCTGTCT 60.015 38.462 0.00 0.00 38.00 3.41
111 112 6.015434 AGTCCCATTTGTTTTACAATCCTGTC 60.015 38.462 0.00 0.00 38.00 3.51
112 113 5.838521 AGTCCCATTTGTTTTACAATCCTGT 59.161 36.000 0.00 0.00 38.00 4.00
113 114 6.015519 TCAGTCCCATTTGTTTTACAATCCTG 60.016 38.462 0.00 0.00 38.00 3.86
114 115 6.074648 TCAGTCCCATTTGTTTTACAATCCT 58.925 36.000 0.00 0.00 38.00 3.24
115 116 6.339587 TCAGTCCCATTTGTTTTACAATCC 57.660 37.500 0.00 0.00 38.00 3.01
116 117 8.141268 TCTTTCAGTCCCATTTGTTTTACAATC 58.859 33.333 0.00 0.00 38.00 2.67
117 118 8.017418 TCTTTCAGTCCCATTTGTTTTACAAT 57.983 30.769 0.00 0.00 38.00 2.71
118 119 7.411486 TCTTTCAGTCCCATTTGTTTTACAA 57.589 32.000 0.00 0.00 36.11 2.41
119 120 7.595819 ATCTTTCAGTCCCATTTGTTTTACA 57.404 32.000 0.00 0.00 0.00 2.41
120 121 8.360390 AGAATCTTTCAGTCCCATTTGTTTTAC 58.640 33.333 0.00 0.00 0.00 2.01
121 122 8.359642 CAGAATCTTTCAGTCCCATTTGTTTTA 58.640 33.333 0.00 0.00 0.00 1.52
122 123 7.212274 CAGAATCTTTCAGTCCCATTTGTTTT 58.788 34.615 0.00 0.00 0.00 2.43
123 124 6.239402 CCAGAATCTTTCAGTCCCATTTGTTT 60.239 38.462 0.00 0.00 0.00 2.83
124 125 5.244626 CCAGAATCTTTCAGTCCCATTTGTT 59.755 40.000 0.00 0.00 0.00 2.83
125 126 4.768968 CCAGAATCTTTCAGTCCCATTTGT 59.231 41.667 0.00 0.00 0.00 2.83
126 127 4.159135 CCCAGAATCTTTCAGTCCCATTTG 59.841 45.833 0.00 0.00 0.00 2.32
127 128 4.044571 TCCCAGAATCTTTCAGTCCCATTT 59.955 41.667 0.00 0.00 0.00 2.32
128 129 3.593328 TCCCAGAATCTTTCAGTCCCATT 59.407 43.478 0.00 0.00 0.00 3.16
129 130 3.192944 TCCCAGAATCTTTCAGTCCCAT 58.807 45.455 0.00 0.00 0.00 4.00
130 131 2.573462 CTCCCAGAATCTTTCAGTCCCA 59.427 50.000 0.00 0.00 0.00 4.37
131 132 2.840651 TCTCCCAGAATCTTTCAGTCCC 59.159 50.000 0.00 0.00 0.00 4.46
132 133 4.512484 CTTCTCCCAGAATCTTTCAGTCC 58.488 47.826 0.00 0.00 33.13 3.85
133 134 3.938334 GCTTCTCCCAGAATCTTTCAGTC 59.062 47.826 0.00 0.00 33.13 3.51
134 135 3.586618 AGCTTCTCCCAGAATCTTTCAGT 59.413 43.478 0.00 0.00 33.13 3.41
135 136 3.940221 CAGCTTCTCCCAGAATCTTTCAG 59.060 47.826 0.00 0.00 33.13 3.02
136 137 3.307975 CCAGCTTCTCCCAGAATCTTTCA 60.308 47.826 0.00 0.00 33.13 2.69
137 138 3.277715 CCAGCTTCTCCCAGAATCTTTC 58.722 50.000 0.00 0.00 33.13 2.62
138 139 2.025510 CCCAGCTTCTCCCAGAATCTTT 60.026 50.000 0.00 0.00 33.13 2.52
139 140 1.563410 CCCAGCTTCTCCCAGAATCTT 59.437 52.381 0.00 0.00 33.13 2.40
140 141 1.211456 CCCAGCTTCTCCCAGAATCT 58.789 55.000 0.00 0.00 33.13 2.40
141 142 0.915364 ACCCAGCTTCTCCCAGAATC 59.085 55.000 0.00 0.00 33.13 2.52
142 143 2.122768 CTACCCAGCTTCTCCCAGAAT 58.877 52.381 0.00 0.00 33.13 2.40
143 144 1.573108 CTACCCAGCTTCTCCCAGAA 58.427 55.000 0.00 0.00 32.50 3.02
144 145 0.325671 CCTACCCAGCTTCTCCCAGA 60.326 60.000 0.00 0.00 0.00 3.86
145 146 1.341156 CCCTACCCAGCTTCTCCCAG 61.341 65.000 0.00 0.00 0.00 4.45
146 147 1.306997 CCCTACCCAGCTTCTCCCA 60.307 63.158 0.00 0.00 0.00 4.37
147 148 0.400670 ATCCCTACCCAGCTTCTCCC 60.401 60.000 0.00 0.00 0.00 4.30
148 149 1.052617 GATCCCTACCCAGCTTCTCC 58.947 60.000 0.00 0.00 0.00 3.71
149 150 0.676736 CGATCCCTACCCAGCTTCTC 59.323 60.000 0.00 0.00 0.00 2.87
150 151 0.261991 TCGATCCCTACCCAGCTTCT 59.738 55.000 0.00 0.00 0.00 2.85
151 152 1.120530 TTCGATCCCTACCCAGCTTC 58.879 55.000 0.00 0.00 0.00 3.86
152 153 1.807814 ATTCGATCCCTACCCAGCTT 58.192 50.000 0.00 0.00 0.00 3.74
153 154 1.694696 GAATTCGATCCCTACCCAGCT 59.305 52.381 0.00 0.00 0.00 4.24
154 155 1.694696 AGAATTCGATCCCTACCCAGC 59.305 52.381 0.00 0.00 0.00 4.85
155 156 2.037772 CCAGAATTCGATCCCTACCCAG 59.962 54.545 0.00 0.00 0.00 4.45
156 157 2.047061 CCAGAATTCGATCCCTACCCA 58.953 52.381 0.00 0.00 0.00 4.51
157 158 2.326428 TCCAGAATTCGATCCCTACCC 58.674 52.381 0.00 0.00 0.00 3.69
158 159 3.641906 TCTTCCAGAATTCGATCCCTACC 59.358 47.826 0.00 0.00 0.00 3.18
159 160 4.939052 TCTTCCAGAATTCGATCCCTAC 57.061 45.455 0.00 0.00 0.00 3.18
160 161 5.012148 GGATTCTTCCAGAATTCGATCCCTA 59.988 44.000 0.00 0.00 44.41 3.53
161 162 4.202409 GGATTCTTCCAGAATTCGATCCCT 60.202 45.833 0.00 0.00 44.41 4.20
162 163 4.068599 GGATTCTTCCAGAATTCGATCCC 58.931 47.826 0.00 0.00 44.41 3.85
163 164 4.068599 GGGATTCTTCCAGAATTCGATCC 58.931 47.826 0.00 5.91 44.41 3.36
164 165 4.068599 GGGGATTCTTCCAGAATTCGATC 58.931 47.826 0.00 0.00 44.41 3.69
165 166 3.459598 TGGGGATTCTTCCAGAATTCGAT 59.540 43.478 0.00 0.00 44.41 3.59
166 167 2.843730 TGGGGATTCTTCCAGAATTCGA 59.156 45.455 0.00 0.00 44.41 3.71
167 168 3.281727 TGGGGATTCTTCCAGAATTCG 57.718 47.619 0.00 0.00 44.41 3.34
186 187 3.057033 CCCAGTTCTTTTGCCAGAATCTG 60.057 47.826 2.68 2.68 35.23 2.90
187 188 3.160269 CCCAGTTCTTTTGCCAGAATCT 58.840 45.455 0.00 0.00 35.23 2.40
188 189 2.353109 GCCCAGTTCTTTTGCCAGAATC 60.353 50.000 0.00 0.00 35.23 2.52
189 190 1.620323 GCCCAGTTCTTTTGCCAGAAT 59.380 47.619 0.00 0.00 35.23 2.40
190 191 1.039856 GCCCAGTTCTTTTGCCAGAA 58.960 50.000 0.00 0.00 0.00 3.02
191 192 0.827507 GGCCCAGTTCTTTTGCCAGA 60.828 55.000 0.00 0.00 41.76 3.86
192 193 0.829182 AGGCCCAGTTCTTTTGCCAG 60.829 55.000 0.00 0.00 44.60 4.85
193 194 0.480690 TAGGCCCAGTTCTTTTGCCA 59.519 50.000 0.00 0.00 44.60 4.92
194 195 1.627864 TTAGGCCCAGTTCTTTTGCC 58.372 50.000 0.00 0.00 42.48 4.52
195 196 3.368427 GGAATTAGGCCCAGTTCTTTTGC 60.368 47.826 0.00 0.00 0.00 3.68
196 197 4.089361 AGGAATTAGGCCCAGTTCTTTTG 58.911 43.478 0.00 0.00 0.00 2.44
197 198 4.404185 AGGAATTAGGCCCAGTTCTTTT 57.596 40.909 0.00 0.00 0.00 2.27
198 199 4.044698 AGAAGGAATTAGGCCCAGTTCTTT 59.955 41.667 3.70 3.70 0.00 2.52
199 200 3.593780 AGAAGGAATTAGGCCCAGTTCTT 59.406 43.478 0.00 0.00 0.00 2.52
200 201 3.193782 AGAAGGAATTAGGCCCAGTTCT 58.806 45.455 0.00 0.00 0.00 3.01
201 202 3.653835 AGAAGGAATTAGGCCCAGTTC 57.346 47.619 0.00 0.00 0.00 3.01
202 203 3.593780 AGAAGAAGGAATTAGGCCCAGTT 59.406 43.478 0.00 0.00 0.00 3.16
203 204 3.193782 AGAAGAAGGAATTAGGCCCAGT 58.806 45.455 0.00 0.00 0.00 4.00
204 205 3.200825 TGAGAAGAAGGAATTAGGCCCAG 59.799 47.826 0.00 0.00 0.00 4.45
205 206 3.189606 TGAGAAGAAGGAATTAGGCCCA 58.810 45.455 0.00 0.00 0.00 5.36
206 207 3.933861 TGAGAAGAAGGAATTAGGCCC 57.066 47.619 0.00 0.00 0.00 5.80
207 208 4.140536 CCATGAGAAGAAGGAATTAGGCC 58.859 47.826 0.00 0.00 0.00 5.19
208 209 5.041191 TCCATGAGAAGAAGGAATTAGGC 57.959 43.478 0.00 0.00 0.00 3.93
209 210 7.285566 TCAATCCATGAGAAGAAGGAATTAGG 58.714 38.462 0.00 0.00 33.17 2.69
292 298 2.093783 GCGTCTCCATTAACAAACTCGG 59.906 50.000 0.00 0.00 0.00 4.63
345 351 5.870433 TGCTTAAAGTTGATAAATCCGACGA 59.130 36.000 0.00 0.00 0.00 4.20
361 370 4.913924 GCACACTCACAGAATTGCTTAAAG 59.086 41.667 0.00 0.00 0.00 1.85
362 371 4.261572 GGCACACTCACAGAATTGCTTAAA 60.262 41.667 0.00 0.00 0.00 1.52
384 393 5.183904 GGCTGGTGCTCCAATATAAATAAGG 59.816 44.000 9.14 0.00 43.81 2.69
439 448 0.512952 GCTCGACACTTTTGCATCGT 59.487 50.000 5.17 0.00 36.03 3.73
459 468 1.060713 CGAACTACACACTTGGCGAG 58.939 55.000 0.00 0.00 0.00 5.03
474 483 1.701704 CCGTGTGTAGTAACCCGAAC 58.298 55.000 0.00 0.00 0.00 3.95
476 485 1.177895 TGCCGTGTGTAGTAACCCGA 61.178 55.000 0.00 0.00 0.00 5.14
523 537 1.376609 AATCCGTTCGGGCTGATTGC 61.377 55.000 11.37 0.00 41.94 3.56
525 539 1.743394 GAAAATCCGTTCGGGCTGATT 59.257 47.619 11.37 1.21 34.94 2.57
527 541 0.675522 GGAAAATCCGTTCGGGCTGA 60.676 55.000 11.37 0.00 34.94 4.26
528 542 0.958382 TGGAAAATCCGTTCGGGCTG 60.958 55.000 11.37 0.00 40.17 4.85
529 543 0.958876 GTGGAAAATCCGTTCGGGCT 60.959 55.000 11.37 0.00 40.17 5.19
530 544 1.504900 GTGGAAAATCCGTTCGGGC 59.495 57.895 11.37 0.00 40.17 6.13
531 545 0.952010 ACGTGGAAAATCCGTTCGGG 60.952 55.000 11.37 0.00 40.17 5.14
532 546 0.441145 GACGTGGAAAATCCGTTCGG 59.559 55.000 4.74 4.74 40.17 4.30
533 547 1.425412 AGACGTGGAAAATCCGTTCG 58.575 50.000 0.00 6.81 40.17 3.95
534 548 3.891056 AAAGACGTGGAAAATCCGTTC 57.109 42.857 0.00 0.00 40.17 3.95
535 549 4.642445 AAAAAGACGTGGAAAATCCGTT 57.358 36.364 0.00 0.00 40.17 4.44
660 675 0.470341 GGGTAAGGATCTCAGTGGGC 59.530 60.000 0.00 0.00 0.00 5.36
668 683 2.172717 CCATTTCGTGGGGTAAGGATCT 59.827 50.000 0.00 0.00 44.79 2.75
705 722 1.377987 GTTTCCCCGCATGTAGGCA 60.378 57.895 0.00 0.00 0.00 4.75
707 724 3.808036 CGTTTCCCCGCATGTAGG 58.192 61.111 0.00 0.00 0.00 3.18
717 734 2.248086 ATACTCACCCGGCGTTTCCC 62.248 60.000 6.01 0.00 0.00 3.97
718 735 1.087771 CATACTCACCCGGCGTTTCC 61.088 60.000 6.01 0.00 0.00 3.13
724 741 0.039074 CGAGATCATACTCACCCGGC 60.039 60.000 0.00 0.00 36.80 6.13
728 745 4.764823 AGGATTCTCGAGATCATACTCACC 59.235 45.833 17.44 4.96 36.80 4.02
744 761 1.557099 TGTACTGGCACGAGGATTCT 58.443 50.000 0.00 0.00 0.00 2.40
771 791 2.683152 CGTGGGGCAGAGTACTACTACT 60.683 54.545 0.00 0.00 35.77 2.57
772 792 1.674962 CGTGGGGCAGAGTACTACTAC 59.325 57.143 0.00 0.00 0.00 2.73
773 793 1.561076 TCGTGGGGCAGAGTACTACTA 59.439 52.381 0.00 0.00 0.00 1.82
1028 1054 1.589399 CCAGAGGAGGAGGAGGAGGT 61.589 65.000 0.00 0.00 0.00 3.85
1124 1153 4.084888 GCTTTTCACCGCCGTCCG 62.085 66.667 0.00 0.00 0.00 4.79
1125 1154 3.733960 GGCTTTTCACCGCCGTCC 61.734 66.667 0.00 0.00 36.45 4.79
1133 1162 2.954611 GCAGGTCCGGCTTTTCAC 59.045 61.111 6.77 0.00 0.00 3.18
1134 1163 2.668212 CGCAGGTCCGGCTTTTCA 60.668 61.111 12.42 0.00 0.00 2.69
1136 1165 2.978010 CACGCAGGTCCGGCTTTT 60.978 61.111 12.42 0.00 0.00 2.27
1173 1202 3.677648 GCCAGGCACCACAGCTTG 61.678 66.667 6.55 0.00 40.84 4.01
1371 1400 2.705826 GCGAGCATGAAGGCGAAG 59.294 61.111 0.00 0.00 39.27 3.79
1484 1522 2.320587 GCTCACAACTCACCTGCGG 61.321 63.158 0.00 0.00 0.00 5.69
1574 1612 3.887868 CTTTATGCCGCCGGGTGC 61.888 66.667 4.77 2.75 34.97 5.01
1575 1613 3.209097 CCTTTATGCCGCCGGGTG 61.209 66.667 4.77 0.00 34.97 4.61
1634 1710 9.410556 GCAAATGTCTTCATAACAAACAATAGT 57.589 29.630 0.00 0.00 33.49 2.12
1654 1768 8.072567 GTCAGGAATTAAGCATACTAGCAAATG 58.927 37.037 0.00 0.00 36.85 2.32
1661 1775 7.526142 AGATCGTCAGGAATTAAGCATACTA 57.474 36.000 0.00 0.00 0.00 1.82
1662 1776 6.412362 AGATCGTCAGGAATTAAGCATACT 57.588 37.500 0.00 0.00 0.00 2.12
1663 1777 6.701841 TCAAGATCGTCAGGAATTAAGCATAC 59.298 38.462 0.00 0.00 0.00 2.39
1667 1781 6.610741 AATCAAGATCGTCAGGAATTAAGC 57.389 37.500 0.00 0.00 0.00 3.09
1692 1807 8.707796 ACAGGAGATTAAGATCGGTAAGAATA 57.292 34.615 0.00 0.00 37.37 1.75
1695 1810 6.366340 AGACAGGAGATTAAGATCGGTAAGA 58.634 40.000 0.00 0.00 37.37 2.10
1700 1845 6.039941 AGTTGTAGACAGGAGATTAAGATCGG 59.960 42.308 0.00 0.00 37.37 4.18
1701 1846 7.033530 AGTTGTAGACAGGAGATTAAGATCG 57.966 40.000 0.00 0.00 37.37 3.69
1712 1863 2.637872 CCCTGGAAAGTTGTAGACAGGA 59.362 50.000 9.90 0.00 46.38 3.86
1755 1909 2.023223 CGTTGCCATTTGTGCTGCC 61.023 57.895 0.00 0.00 0.00 4.85
1763 1917 1.376609 GATCCGAGCCGTTGCCATTT 61.377 55.000 0.00 0.00 38.69 2.32
1786 1940 2.266554 CTGCACTACTTACAGCTGCTC 58.733 52.381 15.27 0.00 0.00 4.26
1849 2010 3.315191 ACCAAGATCAGTTTCGTTTGGTG 59.685 43.478 10.08 0.00 44.67 4.17
1857 2018 3.499918 CAGACACCACCAAGATCAGTTTC 59.500 47.826 0.00 0.00 0.00 2.78
1858 2019 3.480470 CAGACACCACCAAGATCAGTTT 58.520 45.455 0.00 0.00 0.00 2.66
1859 2020 2.811873 GCAGACACCACCAAGATCAGTT 60.812 50.000 0.00 0.00 0.00 3.16
1860 2021 1.271054 GCAGACACCACCAAGATCAGT 60.271 52.381 0.00 0.00 0.00 3.41
1864 2025 1.672356 GCGCAGACACCACCAAGAT 60.672 57.895 0.30 0.00 0.00 2.40
1865 2026 2.280797 GCGCAGACACCACCAAGA 60.281 61.111 0.30 0.00 0.00 3.02
1995 2191 1.515954 GATGCCCTCGAAGACGGAA 59.484 57.895 0.00 0.00 34.57 4.30
2067 2268 7.880160 TCTTCTTTCTCATGGAAGTCAAAAA 57.120 32.000 8.06 0.00 38.02 1.94
2076 2277 6.404708 CAGATGTCTTCTTCTTTCTCATGGA 58.595 40.000 0.00 0.00 29.93 3.41
2083 2284 5.873712 TGAGATGCAGATGTCTTCTTCTTTC 59.126 40.000 0.00 0.00 29.93 2.62
2084 2285 5.802465 TGAGATGCAGATGTCTTCTTCTTT 58.198 37.500 0.00 0.00 29.93 2.52
2095 2298 3.051327 GTCGAGACATGAGATGCAGATG 58.949 50.000 0.00 0.00 0.00 2.90
2125 2328 1.442769 ACTTGCAAGCATCTGTACCG 58.557 50.000 26.27 0.00 0.00 4.02
2126 2329 2.669391 GCAACTTGCAAGCATCTGTACC 60.669 50.000 26.27 3.23 44.26 3.34
2204 2427 6.432607 AAGTATGCATGACAATGACTGAAG 57.567 37.500 10.16 0.00 35.67 3.02
2206 2429 6.822667 AAAAGTATGCATGACAATGACTGA 57.177 33.333 10.16 0.00 35.67 3.41
2238 2461 4.205587 CTGGAGCATCTATTCAAAGGCTT 58.794 43.478 0.00 0.00 33.73 4.35
2250 2473 0.469070 GCATCTGGACTGGAGCATCT 59.531 55.000 0.00 0.00 33.73 2.90
2253 2476 1.903294 GAGCATCTGGACTGGAGCA 59.097 57.895 0.00 0.00 0.00 4.26
2255 2478 1.227205 GCGAGCATCTGGACTGGAG 60.227 63.158 0.00 0.00 0.00 3.86
2256 2479 1.543944 TTGCGAGCATCTGGACTGGA 61.544 55.000 0.00 0.00 0.00 3.86
2257 2480 1.078918 TTGCGAGCATCTGGACTGG 60.079 57.895 0.00 0.00 0.00 4.00
2258 2481 0.390866 AGTTGCGAGCATCTGGACTG 60.391 55.000 7.75 0.00 0.00 3.51
2259 2482 0.322975 AAGTTGCGAGCATCTGGACT 59.677 50.000 9.14 1.91 0.00 3.85
2260 2483 0.723981 GAAGTTGCGAGCATCTGGAC 59.276 55.000 9.14 0.00 0.00 4.02
2261 2484 0.391661 GGAAGTTGCGAGCATCTGGA 60.392 55.000 9.14 0.00 0.00 3.86
2262 2485 0.392193 AGGAAGTTGCGAGCATCTGG 60.392 55.000 9.14 0.00 0.00 3.86
2291 2514 4.338012 TGCTGATTGAAGTGGACATCAAT 58.662 39.130 9.40 9.40 44.08 2.57
2293 2516 3.421919 TGCTGATTGAAGTGGACATCA 57.578 42.857 0.00 0.00 0.00 3.07
2296 2519 4.022935 GTGAAATGCTGATTGAAGTGGACA 60.023 41.667 0.00 0.00 0.00 4.02
2319 2546 7.395190 TTCTGGTTAATGTCAATGGAATCTG 57.605 36.000 0.00 0.00 0.00 2.90
2320 2547 8.421249 TTTTCTGGTTAATGTCAATGGAATCT 57.579 30.769 0.00 0.00 0.00 2.40
2332 2559 7.930865 TGGGATTTTCTGTTTTTCTGGTTAATG 59.069 33.333 0.00 0.00 0.00 1.90
2347 2575 8.574737 GGAAGATTGATTATCTGGGATTTTCTG 58.425 37.037 0.00 0.00 42.90 3.02
2349 2577 8.703378 AGGAAGATTGATTATCTGGGATTTTC 57.297 34.615 0.00 0.00 42.90 2.29
2353 2581 7.515514 ACTGTAGGAAGATTGATTATCTGGGAT 59.484 37.037 0.00 0.00 42.90 3.85
2383 2618 1.726853 GACAGGTCGCAAGCATAGTT 58.273 50.000 0.00 0.00 37.18 2.24
2385 2620 2.291843 CGACAGGTCGCAAGCATAG 58.708 57.895 9.05 0.00 46.50 2.23
2386 2621 4.494811 CGACAGGTCGCAAGCATA 57.505 55.556 9.05 0.00 46.50 3.14
2395 2630 1.131126 CAATGCCAATGTCGACAGGTC 59.869 52.381 24.41 15.53 0.00 3.85
2396 2631 1.167851 CAATGCCAATGTCGACAGGT 58.832 50.000 24.41 11.52 0.00 4.00
2397 2632 0.179156 GCAATGCCAATGTCGACAGG 60.179 55.000 24.41 20.53 0.00 4.00
2398 2633 0.522626 TGCAATGCCAATGTCGACAG 59.477 50.000 24.41 11.58 0.00 3.51
2399 2634 0.522626 CTGCAATGCCAATGTCGACA 59.477 50.000 22.48 22.48 0.00 4.35
2400 2635 0.804364 TCTGCAATGCCAATGTCGAC 59.196 50.000 9.11 9.11 0.00 4.20
2401 2636 1.089112 CTCTGCAATGCCAATGTCGA 58.911 50.000 1.53 0.00 0.00 4.20
2402 2637 1.089112 TCTCTGCAATGCCAATGTCG 58.911 50.000 1.53 0.00 0.00 4.35
2403 2638 1.202110 CGTCTCTGCAATGCCAATGTC 60.202 52.381 1.53 0.00 0.00 3.06
2634 2869 1.519455 CCATGGAGACGGCGAAGAC 60.519 63.158 16.62 1.19 0.00 3.01
2780 3015 0.590481 TCATAACGACGGCGATGACG 60.590 55.000 22.49 15.64 41.40 4.35
2795 3030 4.416516 ACGATCAGGTGTCCCATATCATA 58.583 43.478 0.00 0.00 0.00 2.15
2816 3051 2.359900 CAGCCCCATGTAACTTCAGAC 58.640 52.381 0.00 0.00 0.00 3.51
2818 3053 1.004745 ACCAGCCCCATGTAACTTCAG 59.995 52.381 0.00 0.00 0.00 3.02
2819 3054 1.072266 ACCAGCCCCATGTAACTTCA 58.928 50.000 0.00 0.00 0.00 3.02
2820 3055 2.215942 AACCAGCCCCATGTAACTTC 57.784 50.000 0.00 0.00 0.00 3.01
2821 3056 2.247358 CAAACCAGCCCCATGTAACTT 58.753 47.619 0.00 0.00 0.00 2.66
2822 3057 1.146982 ACAAACCAGCCCCATGTAACT 59.853 47.619 0.00 0.00 0.00 2.24
2823 3058 1.627864 ACAAACCAGCCCCATGTAAC 58.372 50.000 0.00 0.00 0.00 2.50
2824 3059 2.390225 AACAAACCAGCCCCATGTAA 57.610 45.000 0.00 0.00 0.00 2.41
2826 3061 2.390225 TTAACAAACCAGCCCCATGT 57.610 45.000 0.00 0.00 0.00 3.21
2827 3062 3.979101 AATTAACAAACCAGCCCCATG 57.021 42.857 0.00 0.00 0.00 3.66
2829 3064 4.120946 ACTAATTAACAAACCAGCCCCA 57.879 40.909 0.00 0.00 0.00 4.96
2830 3065 5.477607 AAACTAATTAACAAACCAGCCCC 57.522 39.130 0.00 0.00 0.00 5.80
2850 3097 4.121317 ACAGTATGAACGAACGTCCAAAA 58.879 39.130 0.00 0.00 39.69 2.44
2869 3116 9.935241 ATCCTTGCACTATGAAATATACTACAG 57.065 33.333 0.00 0.00 0.00 2.74
2873 3120 8.880244 TGGTATCCTTGCACTATGAAATATACT 58.120 33.333 0.00 0.00 0.00 2.12
2874 3121 9.155975 CTGGTATCCTTGCACTATGAAATATAC 57.844 37.037 0.00 0.00 0.00 1.47
2875 3122 8.880244 ACTGGTATCCTTGCACTATGAAATATA 58.120 33.333 0.00 0.00 0.00 0.86
2876 3123 7.749666 ACTGGTATCCTTGCACTATGAAATAT 58.250 34.615 0.00 0.00 0.00 1.28
2889 3136 5.431765 ACATTGAAGCTACTGGTATCCTTG 58.568 41.667 0.00 0.00 0.00 3.61
2898 3145 5.049818 GCAATAGCCTACATTGAAGCTACTG 60.050 44.000 9.67 9.67 40.41 2.74
2899 3146 5.059833 GCAATAGCCTACATTGAAGCTACT 58.940 41.667 8.47 0.00 40.41 2.57
2965 3222 7.399245 TTTTGCTTGTTTTTCACCTAGTAGT 57.601 32.000 0.00 0.00 0.00 2.73
2968 3225 7.102993 ACATTTTTGCTTGTTTTTCACCTAGT 58.897 30.769 0.00 0.00 0.00 2.57
2970 3227 7.913674 AACATTTTTGCTTGTTTTTCACCTA 57.086 28.000 0.00 0.00 32.28 3.08
2994 3422 8.710551 TCGCAGTCGTAAATAAACAAGAATTTA 58.289 29.630 0.00 0.00 36.96 1.40
3002 3430 5.566016 GCATTTTCGCAGTCGTAAATAAACA 59.434 36.000 2.87 0.00 41.52 2.83
3013 3441 1.001378 ACTTGTGGCATTTTCGCAGTC 60.001 47.619 0.00 0.00 0.00 3.51
3018 3446 2.034558 AGTTGGACTTGTGGCATTTTCG 59.965 45.455 0.00 0.00 0.00 3.46
3021 3449 2.665165 TCAGTTGGACTTGTGGCATTT 58.335 42.857 0.00 0.00 0.00 2.32
3022 3450 2.363306 TCAGTTGGACTTGTGGCATT 57.637 45.000 0.00 0.00 0.00 3.56
3074 3847 4.263683 TGGTATTGTGATGATTGTGTGGGA 60.264 41.667 0.00 0.00 0.00 4.37
3084 3857 4.343231 ACTGCCATTTGGTATTGTGATGA 58.657 39.130 0.00 0.00 37.57 2.92
3093 3867 2.161855 CTGCTTGACTGCCATTTGGTA 58.838 47.619 0.00 0.00 37.57 3.25
3114 3888 2.546789 GTGTACTGGTGTTGTGGTTAGC 59.453 50.000 0.00 0.00 0.00 3.09
3118 3892 0.913205 TGGTGTACTGGTGTTGTGGT 59.087 50.000 0.00 0.00 0.00 4.16
3124 3898 1.675552 GTTTGCTGGTGTACTGGTGT 58.324 50.000 0.00 0.00 0.00 4.16
3130 3907 3.568007 TCTTCATTGGTTTGCTGGTGTAC 59.432 43.478 0.00 0.00 0.00 2.90
3180 3957 0.678048 GTCTGGGGGTTGTGCATCTC 60.678 60.000 0.00 0.00 0.00 2.75
3216 4051 0.322187 GTTATGGCCGTGTTGGTCCT 60.322 55.000 8.05 0.00 43.96 3.85
3251 4090 0.109597 CATTTGTGCGCAGGGAACTC 60.110 55.000 12.22 0.00 40.21 3.01
3259 4098 1.007502 GTGAAGCCATTTGTGCGCA 60.008 52.632 5.66 5.66 0.00 6.09
3265 4104 4.771590 TCTTAAGCTGTGAAGCCATTTG 57.228 40.909 0.00 0.00 34.90 2.32
3398 4237 2.103042 CACCAGCCAAGCGAGCTAC 61.103 63.158 0.00 0.00 38.95 3.58
3400 4239 4.711949 CCACCAGCCAAGCGAGCT 62.712 66.667 0.00 0.00 42.70 4.09
3449 4288 2.813908 GACACCGCATCCGTCACC 60.814 66.667 0.00 0.00 0.00 4.02
3450 4289 1.940883 TAGGACACCGCATCCGTCAC 61.941 60.000 0.00 0.00 41.52 3.67
3460 4299 1.439679 GGCAAAGAAGTAGGACACCG 58.560 55.000 0.00 0.00 0.00 4.94
3463 4302 1.275291 CCTCGGCAAAGAAGTAGGACA 59.725 52.381 0.00 0.00 0.00 4.02
3503 4342 2.520120 AGAGATCCTGAGACACCCCATA 59.480 50.000 0.00 0.00 0.00 2.74
3514 4353 2.103373 CGTCTGGGAAAGAGATCCTGA 58.897 52.381 0.00 0.00 39.57 3.86
3581 4420 2.360475 GCTTGCTCACCCCCACTC 60.360 66.667 0.00 0.00 0.00 3.51
3588 4427 3.428045 GGTATTTCACATGCTTGCTCACC 60.428 47.826 0.00 0.00 0.00 4.02
3612 4451 4.369872 AGAAAGATGTCCTCCCTTCTGAT 58.630 43.478 0.00 0.00 29.60 2.90
3616 4455 3.264450 TCCAAGAAAGATGTCCTCCCTTC 59.736 47.826 0.00 0.00 0.00 3.46
3626 4466 5.640189 AGCATTCAAGTCCAAGAAAGATG 57.360 39.130 0.00 0.00 0.00 2.90
3635 4475 6.360370 AACTAACTCTAGCATTCAAGTCCA 57.640 37.500 0.00 0.00 0.00 4.02
3655 4495 2.289010 GCAATTGCTTGGCACCTTAACT 60.289 45.455 23.21 0.00 38.71 2.24
3656 4496 2.068519 GCAATTGCTTGGCACCTTAAC 58.931 47.619 23.21 0.00 38.71 2.01
3697 4537 4.317839 GCCGTTACAATTACAGCTATGACG 60.318 45.833 0.00 0.00 0.00 4.35
3712 4552 2.321263 TTTGGGTCACGGCCGTTACA 62.321 55.000 35.85 25.38 0.00 2.41
3719 4559 0.672401 TCGATTCTTTGGGTCACGGC 60.672 55.000 0.00 0.00 0.00 5.68
3722 4562 3.040147 TCAGTCGATTCTTTGGGTCAC 57.960 47.619 0.00 0.00 0.00 3.67
3737 4577 6.638468 CACCTTTAGCTTTGTTTCATTCAGTC 59.362 38.462 0.00 0.00 0.00 3.51
3746 4589 7.170393 ACTTCTTTCACCTTTAGCTTTGTTT 57.830 32.000 0.00 0.00 0.00 2.83
3783 4626 9.911788 ACTCATGACCATCATATAAAGAAAGTT 57.088 29.630 0.00 0.00 34.28 2.66


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.