>input_sequence_43045
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-----------------------------------------------------------------ATGGCCACGGCCGCC
AGCTCCCGCCACCACCTCCTCCTCC---TCCTCTGGCTCTGCGCGGCCGCCAGCACGGCCTGGGCCCATGGAGGCGGCGG
GGACGACGACGCGGACTCCGGAGACGCGGACGCGGACGGCGGTGAAAAGCCGGACCTGCGTGCGCCGGGGCTGGTGGCGG
TCAAGCTGTGGTGCCTGGCGCTGGTGTTCGCGGGCACGCTGGCGGGCGGAGTGTCCCCCTACTTCATGCGGTGGAACGAG
GCGTTCCTGGCGCTGGGCACGCAGTTCGCCGGCGGGGTCTTCCTCGGCACCGCCATGATGCACTTCCTCAGCGACGCCAA
CGAGACCTTCGGGGACCTCGTCCCCTCCAGCGAGTACCCCTTCGCCTTCATGCTCGCCTGCGCCGGCTACGTGCTCACCA
TGCTCGCCGAGTGCGCCATCTCCTCCGTCGTCGCGCGCGGCCGCACCGCGCCC---------GCCGCCGCCCCGGCAACA
ACCGCAGGTGAGTTGTGAGCGGCCCGGCAGCTCACGTGCTCTCCGCTGAAACTATACTTTACTTTTTACTATGTCCGTGC
CGGCCGTGCTGGCAC-------------CCGGCGGC--------ATAAAGGAGGCAGCTGGGCGTTGGGT----------
-------TAAATGCAAATTTGCGTTCTATACTA--------------------------------------TTGTTTGTT
ATGAAGACATTTGCTAGTATG-CTTAATTCCTGACGATCTTGATTATATTCT----------------------------
--TACCG------ATCTTAATCT---CCTGTCTACAACTTTCCAGGGGAGCTGGAGGAGGGCAAGCTGGGCAGCACAAAT
GGCAACGGCTCGGATCAACGAGCAGCTGTAAGTAGTGCAGCCTCCGAGTTCAGTCTTG---TT----TTTTGCTTTGTGA
CAGTCAGGCCACCAAACGAAACTGAT-----------------------------------CTTGGTGGTGTCTGCGCAG
GAGCAGGACGCGCACGGGCCGTCGGCGACGGGCCACTCGACGGCGTCGATGCTGCGGAACGCCAGCACCCTCGGCGACAG
CATACTGCTCATCGCCGCGCTCTGCTTCCATTCCGTCTTCGAGGGCATCGCCATCGGAGTCGCCGGTAAGAGAGACTCAC
-----GACGTCGTTGAATCGTCCAAAATTTTTGACTTCCATGAGAA--AGAAGAAGACATCTGCATCTCATGTCTCGACC
ACTGGTTCGGTAC--------------------AGATGCTTGCAAGTTGCAACCATCAATCAACTCTGAAACCGACATCC
GCTAGTTCTTAGCCAGCTTCGTCTCACTTCAGTCATTGTCATGCATACTTTTACTTGTTCAAGCCTTTGAATAGATGCTC
CAGTCCAGATGCTCGCAACTTCCTCGCGCGTCCATTGATGTCCACTTCAATC----AGCATTTCACAGATTCCATTGACA
TTAACCAGAAAAA-CAGAAAATCCCAGATAATC-------AATCTTCCTACAGTTCTAACTATGCTTGCGACCTGTCGAC
ATTGGCATTGCAGAGACGAAGGCGGACGCGTGGAAGGCGCTGTGGACGATCAGCCTGCACAAGGTGTTCGCGGCGGTGGC
CATGGGCATCGCGCTGCTCCGGATGCTGCCCAACCGCCCGCTGCTCTCCTGCTTCGCCTACGCCTTCGCCTTCGCCGTCT
CCAGCCCCGTCGGCGTCGGCGTCGGCATCGCCATCGACGCCACCACGCAGGGCGACGTGGCCGACTGGGTCTTCGCCGTC
TCCATGGGCCTCGCCACCGGCATCTTCATCTACGTCTCCGTCAACCACCTCCTCTCCAAGGGGTACAAGCCCCAGCGGCC
CGTCAAAGCCGACACGCCCCTCGGCCGCTGGCTCGCCGTCGTGCTCGGCGTCGGCGTCATCGCCGTCGTTATGATATGGG
ACACCTGA------------------------------------------------------------------------
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>chr6A_1_TraesCS6A01G099800
GTCATCCTAATAAGGCCCAGTTCTTTTGCCAGAATCTGACCCCTATCCAGCTTCTCCCAGAATCTTTGAGCCTCATTTTT
TTTACAATCCTATCTAGTTAGGGTCTAATTAGACAGGATTGTAAAACAAATGGGACTGAAAGATTCTGGGAGAAGCTGGG
TAGGGATCGAATTCTGGAAGAATCCCCAGATTCTGGCAAAAGAACTGGGCCTAATTCCTTCTTCTCATGGATTGAGACGG
AAGCATGGGAC-----CAAAATGCTGCACCTTTTCTCTATCTGCCCACGGCGTTGATCCGAGTTTGTTAATGGAGACGCG
GTACGGCGGCTGCCCCACGGTCACGGACGTT---CGTCGGATTTATCAACTTTAAGCAATTCTGTGAGTGTGCCTTATTT
ATATTGGAGCACCAGCCAGCCACCAGGAGGAAAATGACATACAGAAAACGATGCAAAAGTGTCGAGCCTCGCCAAGTGTG
TAGTTCGGGTTACT-----ACACACGGCACAGGTCCAAGGCCAAGTCGTCGGAGACGCAATCAGCCCGAACGGATTTTCC
ACGTCTTTTTTGTTG-GAAAACGGATTTTTCCGATACGCCGTCCCCGTCGTACTACCGCCCGCCTCCCACGCTCCCGGCC
TACTTCCACTAAAACGTAGCTCACGCTCCACACCGCCCACTGAGATCCTTACCCCACGAAATGG-TGA-CCCACCTGTCG
GTGCCTACATGCGGGGAAACGCCGGGTGAGTATGATCTCGAG---AATCCTCGTGCCAGTACAAAGTGGGAGTAGTAGTA
CTCTGCCCCACGAGAGA--GAGAAAAAAGTTGTACTCCGGCCAGCGCGACCAACCGTGGGCAATATGATCTACCCGCACC
GCACGGGCCCACACGTCAGCCCCTTCCAGCTTCCCGCCCCGGTATAAA----CTCCCTCCTCGGCCCCCCTCTCGGCCGC
CCCGCCCGCCCCAACGGTTCCCAGCGCGCCACACCAGAGCACCAGAGCGCGGCACCGGCATGGCCATGGCCACGGCCGCC
AGCTCCCGCCACCACCTCCTCCTCC---TCCTCTGGCTCTGCGCGGCCGCCAGCACGGCCTGGGCCCATGGAGGCGGCGG
GGACGACGACGCGGACTCCGGAGACGCGGACGCGGACGGCGGTGAAAAGCCGGACCTGCGTGCGCCGGGGCTGGTGGCGG
TCAAGCTGTGGTGCCTGGCGCTGGTGTTCGCGGGCACGCTGGCGGGCGGAGTGTCCCCCTACTTCATGCGGTGGAACGAG
GCGTTCCTGGCGCTGGGCACGCAGTTCGCCGGCGGGGTCTTCCTCGGCACCGCCATGATGCACTTCCTCAGCGACGCCAA
CGAGACCTTCGGGGACCTCGTCCCCTCCAGCGAGTACCCCTTCGCCTTCATGCTCGCCTGCGCCGGCTACGTGCTCACCA
TGCTCGCCGAGTGCGCCATCTCCTCCGTCGTCGCGCGCGGCCGCACCGCGCCC---------GCCGCCGCCCCGGCAACA
ACCGCAGGTGAGTTGTGAGCGGCCCGGCAGCTCACGTGCTCTCCGCTGAAACTATACTTTACTTTTTACTATGTCCGTGC
CGGCCGTGCTGGCAC-------------CCGGCGGC--------ATAAAGGAGGCAGCTGGGCGTTGGGT----------
-------TAAATGCAAATTTGCGTTCTATACTA--------------------------------------TTGTTTGTT
ATGAAGACATTTGCTAGTATG-CTTAATTCCTGACGATCTTGATTATATTCT----------------------------
--TACCG------ATCTTAATCT---CCTGTCTACAACTTTCCAGGGGAGCTGGAGGAGGGCAAGCTGGGCAGCACAAAT
GGCAACGGCTCGGATCAACGAGCAGCTGTAAGTAGTGCAGCCTCCGAGTTCAGTCTTG---TT----TTTTGCTTTGTGA
CAGTCAGGCCACCAAACGAAACTGAT-----------------------------------CTTGGTGGTGTCTGCGCAG
GAGCAGGACGCGCACGGGCCGTCGGCGACGGGCCACTCGACGGCGTCGATGCTGCGGAACGCCAGCACCCTCGGCGACAG
CATACTGCTCATCGCCGCGCTCTGCTTCCATTCCGTCTTCGAGGGCATCGCCATCGGAGTCGCCGGTAAGAGAGACTCAC
-----GACGTCGTTGAATCGTCCAAAATTTTTGACTTCCATGAGAA--AGAAGAAGACATCTGCATCTCATGTCTCGACC
ACTGGTTCGGTAC--------------------AGATGCTTGCAAGTTGCAACCATCAATCAACTCTGAAACCGACATCC
GCTAGTTCTTAGCCAGCTTCGTCTCACTTCAGTCATTGTCATGCATACTTTTACTTGTTCAAGCCTTTGAATAGATGCTC
CAGTCCAGATGCTCGCAACTTCCTCGCGCGTCCATTGATGTCCACTTCAATC----AGCATTTCACAGATTCCATTGACA
TTAACCAGAAAAA-CAGAAAATCCCAGATAATC-------AATCTTCCTACAGTTCTAACTATGCTTGCGACCTGTCGAC
ATTGGCATTGCAGAGACGAAGGCGGACGCGTGGAAGGCGCTGTGGACGATCAGCCTGCACAAGGTGTTCGCGGCGGTGGC
CATGGGCATCGCGCTGCTCCGGATGCTGCCCAACCGCCCGCTGCTCTCCTGCTTCGCCTACGCCTTCGCCTTCGCCGTCT
CCAGCCCCGTCGGCGTCGGCGTCGGCATCGCCATCGACGCCACCACGCAGGGCGACGTGGCCGACTGGGTCTTCGCCGTC
TCCATGGGCCTCGCCACCGGCATCTTCATCTACGTCTCCGTCAACCACCTCCTCTCCAAGGGGTACAAGCCCCAGCGGCC
CGTCAAAGCCGACACGCCCCTCGGCCGCTGGCTCGCCGTCGTGCTCGGCGTCGGCGTCATCGCCGTCGTTATGATATGGG
ACACCTGATCGTCTGAAGTTACATG------------GGGCTGGTTTGTTAATTAGTTTTGGACGTTCGTTCATACTGTA
GTATATTTCATAGTGCAAGGATACCAG-----TAGCTTCAATGTAGG-----CTATTGCCTCATAGTACATGTGCTGTGA
TAAGAGAACTGTTTACATAATACTACT-----------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------AGGTGAAAAACAAGCAAAAATGTTAAATTCTTGTTTATTTAC
GACTGCGAAAATGCCACAAGTCCAACTGAAAAAAGGACA-----------------------------------------
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----------------------------------------------------------------TCATAATCCTTCCTTT
AGTTCCTCCCACACAATC-ATCACAATACCAAATGGCAGTCAAGCAGGCTAACCACAACA---CCAGTACACCAGCAAAC
CAATGAAGAGTTCCTGGCTCTCCAGGAATTGAACACGAGATGCACAACCCCCAGAC------------------------
----------------------------------CAAACCCAAAACACCCAGGACCAACACGG----CCATAACTTACAG
ATATTGCTCGAGTTCCCTGCGCACAAATGGCTTCACAGCTTAAGAACACTCAGTAGCTATACAGGAACAACAGATCAGGG
CAAAAAACTGATCCGTGGCGCGTTTTCGGAGAGCCTTCTTTCAGACAGACAAAATTTGGCAGCAGCCGATGTTGTGGTAG
CTCGCTTGGCTGGTGGCTGCTTGCCTGCTCTCCTACTGCAGGATCTGGGTGACGGATGCGGTGTCCTACTTCTTTGCCGA
GGCATTACGCAGCTTCTCAAATATGGGGTGTCTCAGGATCTCTTTCCCAGACGGCCGCCTCACGGGATCAGGGTCCATCA
TCGACTGAAAGTAAGCAGAGAGTGGGGGTGAGCAAGCATGTGAAATACCTATCAGAAGGGAGG-ACATCTTTCTTGGACT
TGAATGCTAGAGTTAGTTAAGGTGCCAAGCAATTGCAAATTGCAGCTCTGTAGATACGTCATAGCTGTAATTGTAACGGC
CGTGACCCAAAGAATCGACTGA---ATGAAACAAAGCTAAAGGTGAAAGAAGTTCATTCATGTGAAACTTTCTTT----A
TATGATGGTCATGAGTAACA
>chr6D_212
TAATTTCCTA----------------------------------------------------------------------
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-------------------------------------------------------------TTCTCATGGATTGAGACGG
AAGCATGGGAC-----CAAAATGCTGCACCTCTTCTCTATTTGCTCACGGCGTTGATTCGAGTTTGTTAATGGAGACGCG
GTACAGCGGCGGCCCCACGGTCACGGACGTG---CGTCGGATTTATCAATCTTAAGCAATTCTGTGAGTGTGGCTTATTT
ATATTGGGGCACCAGCCAGCCACCAGGAGGAAAATGACATACAGAAACCGATGCAAAAGTGTCGAGCTTCGCCAAGTGTG
CATGATCCGGGGTTACTACACACACAGCACAGGTCCAAGGCCGAGTCGTCGGAGACACGA------------GATTTTCC
ACGTCTTTTTGTTGGGAAACGGAT-TTTTTCCGATACGCCGTCTCCGTCGTACTACCGCCCGCCTCCCGCG-TCCCCGGC
TACTTCCACTAGGACGATGTACAAGCGCCACACCACCCACTGCGATCCTCACCCCACGAAAAGGATGA-CCCACCTGTCG
GCGACCGTGTGCACACGACTCACCTGTGAGAATGGTCTCGTG---AATCCTCGTGCCAGTACAAAGTGAG---AGTAGTA
CTCTGCCCCACGAGAGG--GAAAAAAAAGTTGTACTCCGGCCAGCGCGACCAACCGTGGGCAATATGATCTACCCGCGCC
GCACGGGCCCACACGTCAGCCCCTTCCAGCTTCCCGCCGCGGTATAAATCCCCTCCCTCCTCGGCCCCCCTCTCGGCCGC
CCCGCCCGCCCCAACGGTTCCCAGCGCGCCACACCAGAGCGCCAGAGCGCGGCACCGGCATGGCCATGGCCCCGGCCACC
AGCCCCCGCCACCTCCTCCTCCTCCTGTTCCTCTGGCTCTGCGCGGCCGCCAGCACGGCCTGGGCGCATGGAGGCGGCGG
GGACGCC------GACTCCGGAGACGCGGACGGCGGCGGCGAGGCGAAGCCGGACCTGCGGGCGCGGGGGCTGGTGGCGA
CGAAGCTGTGGTGCCTGGCGCTGGTGTTCGCGGGCACGCTGGCGGGGGGCGTGTCGCCCTACTTCATGCGGTGGAACGAG
GCGTTCCTGGCGCTGGGCACGCAGTTCGCCGGCGGGGTCTTCCTCAGCACCGCCATGATGCACTTCCTCAGCGACGCCAA
CGAGACCTTCGGGGACCTCCTCCCCCACAGCGAGTACCCGTTCGCCTTCATGCTCGCCTGCGCCGGCTACGTCCTCACCA
TGCTCGCCGAGTGCGCCATCTCCTCCGTCGTCGCGCGCGGCCGCACCGCGC---CCGCCGCCGCCGCCGCCCCGGCAACA
AGCGCAGGTGAGTCGTGAGCGGCCCGGCAGCTCACGTGCTCTCCGCTGAAACTATACTTTACTTTTTACTATGTCCGTGC
TGGCG---------C-------------CCGGCGGC--------ATAAAGGAGGCGGCTGGGCGTTGGGT----------
-------TAAATGCAAATCTGCGTCCTATGCTA--------------------------------------CTGTTTGTC
ATGAAGAAATTTGCACCTATTACTTAATTCCTGATGATCTTGATGACATACC----------------------------
--TAATG------ATCATAATCCGCTGTTAAC----AATTTCCAGGGGAGCTGGAGGAGGGCAAGCTGAGCAGCACGAAT
GGCAACGGCTCGGATCAACAAGCAGCTGTAAGTAGCTCAGCCTCCGGATTCAGTCTTA---GTTTTCTTTTGCTTTGTGA
CAGTCAGGCTACCAAATTGCTTTCTGTACTACATATACTACTATTTCGTACACTTGTGTAACTTGGTGGTGTC-GCGCAG
GAGCAGGACGCGCACGGGCCGTCGGCGACGGGCCACTCGACGGCGTCGATGCTGCGGAACGCCAGCACCCTCGGCGACAG
CATACTGCTCATCGCAGCGCTCTGCTTCCACTCCGTCTTCGAGGGCATCGCCATCGGAGTCGCCGGTAAGAGACAAGTGG
GATAGGACGTCCTTGAATCGTCTAAAACTTTGACTTCCATCTTCCATGAGAAGAAGATATCTGCATCTCATGTCTCGACC
ACTGGTTTAGTAGGATTAGTAGCGTAGAATTGTAGATGCTTGCAAGTTGCAAGCATCAATCAACTCTGAAACTGACATGC
TCTAGTTCATATCCAGCTTCGTCTCAGTCCAGTCATTGTCACGCATACTTTTCCTCGTTCCAGCCTTTGAATCAA-----
-----CAGATGCTCGCAGCTTCCTCTTTCGTCCGTCGACGTCCACTTCAATC----AGCATTTCA--GATTCCGTCAAAA
TTAACCAGAAAAA-TATAAAGTCCT-GATAATCAATCTTGAATCTTCCTACAGCACTGATCA----------------AC
ATTGGCATTGCAGAGACGAAGGCGGACGCGTGGAAGGCGCTGTGGACGATCAGCCTGCACAAGGTGTTCGCGGCGGTGGC
CATGGGCATCGCGCTGCTCCGGATGCTGCCCAACCGGCCGCTGCTCTCCTGCTTCGCCTACGCCTTCGCCTTCGCCGTCT
CCAGCCCCATCGGCGTCGCCGTCGGCATCGCCATCGACGCCACCACGCAGGGCGCCGTGGCCGACTGGATCTTCGCCGTC
TCCATGGGCCTCGCCACCGGCATCTTCATCTACGTCTCCGTCAACCACCTCCTCTCCAAGGGGTACAAGCCCCAGCGGCC
CGTCGCCGCCGACACGCCCCTCGGCCGCTGGCTCGCCGTCGTGCTCGGCGTCGGGGTCATCGCCGTCGTCATGATATGGG
ACACCTGAGCCTGATCCTGTGAACTTGCATTGTACGTGGGCTGGTTGGTTCATAGTAGTACTCC----------------
---TATTTCATAGTGGAAGTATACTGG-----TAGCTTTAATGTAGG-----CTATTGCCTCATAGTACATGTGCTGTGA
TAAGAG--CTGTTTACATA-------------------------------------------------------------
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>chr6B_232
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-----------------------------------------------------------------------TTGAGTCGG
AAGCATGGGACGACACCAAAATGTGGCATCTCTTTTCTGTGTGCTCACGGCGTTGATGCGAGTTTGTTAATTGAGACGCG
GTACAGCGGCTGTCCCACGGTCACGGACGTACTACGTCGGATTTATCAATCTTAAGCAATTCTGTGAGTGTGGCTTATTT
ATATCGGAGCACCAG-CAGCCACCAGGAGGAAAATGACATACAGAAACCGATGCACAAGAGTGGAGCTTCGCCAAGTGTG
TAATCCGGGTTACT-----ACGCACGTCACAGGTCCAAGGCCGAGTCGCCGGAGACACGA------------GATTTTCC
ACGTCTTTTTGTTGGAGAAAACGGATTTTTCAGATACGCCGTCCCCGTCGTACTACCGCCCGCCTCC-ACGCTCCCGGCC
TTCTGCCGATACGACGTAGCACACGCTCCACACCACCCACTGCGTTCCTTACCCCACGAAATGG-TGAGCCCACCTGTCG
GCGATTACGTACGATGAAACCCGGTGTGAGTATGGTCCGAGAATCAATCCTGGTGCCAGTACAAAGTGGG---AGTAGTA
CTCTGCCCCACGAGAGAGAGAAAAAAAAGTTGTACTCCGGCCAGCGCGACCAACCGTGGGCAATATGATCTACCCGCACC
GCGCGGGCCCACACGTCAGCCCCTTCCAGCTTCCCGCCCCGGTATAAATCCCCTGCTCGTCC--CCCCCCCCTCGGCTGC
TCTGCCCGCCCCGACGGTTCCCAGCGCGCCGCAACAGAGCGCCAGAGCGCGGCACCGGCATGGCCATGGCCACGGCCACC
AGCTCCCGCCA---CCTCCTCCTCCTGTTCCTCTGGCTCTGCGCGGCCGCGAGCACGGCCTGGGCCCATGGAGGCGGCGG
AGACGACGACGGGGACTCTGGAGACGCGGACGGCGGCGGCGAGGCGAAGCCGGACCTGCGGGCGCCGGGGCTGGTGGCGA
CGAAGCTGTGGTGCCTGGCGCTGGTGTTCGCGGGCACGCTGGCGGGGGGCGTGTCGCCCTACTTCATGCGGTGGAACGAG
GCGTTCCTGGCGCTGGGCACGCAGTTCGCCGGCGGGGTCTTCCTCGGCACCGCCATGATGCACTTCCTCAGCGACGCCAA
CGAGACCTTCGGCGACCTCGTCCCCTCCAGCGAGTACCCGTTCGCCTTCATGCTCGCCTGCGCCGGCTACGTGCTCACCA
TGCTCGCCGAGTGCGCCATCTCCTCCGTCGTCGCGCGCGGCCGCACCGCGCCCGCCGCCGCCGCCGCCGCCCCGGCAACA
AGCGCAGGTGAGCG------GGCCCTGCGGCTCACGTGTTCTCCGCTGAATCTATACTTTACTACAG--TATATCCGTGC
CGGCCGCGCGCATAGTAGAACCAGCTGGCGACCGGCGGCATACTATAAAGGAGGCAGCTGGGCGTTGGGT----------
-------TAAATGCAAATTGCTTC------CTG--------------------------------------TTGTTTGTT
ACGAAGAAATTTGTC------ACTTAACTTCTGATGATCTTGATTCCATATTGG--------------------------
--TGATG------ATCTTGATTCACTGTTGATTACAATTTTCCAGGAGCGTTGGAGGAGGGCAAGCTGAGCAGCACGAAT
GGCAACGGCTCCGAGCAACAAGCAGCTGTAAGTAGTTCAGCCTCCGGATTCAGTCTTACTTTT----TTTTGCTTTGTGA
CAGTCAGGCTACCAAACTGCTTTCTGTACCACATATACTACTATTTCGTACACTTGCGTAACTTGGTGGCGTC-GCGTAG
GAGCAGGACGCGCACGGGCCGCCGGCGACGGGCCACTCGACGGCGTCGATGCTGCGCAACGCCAGCACCCTCGGCGACAG
CATACTGCTCATCGCCGCGCTCTGCTTCCACTCCGTCTTCGAGGGCATCGCCATCGGAGTCGCCGGTAAGAGAGACTCAT
GTTATGACGACGTTGAACCGTCCAAAAAATTGACTTCCGTGA--------------------------------------
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>chr5A_951
GGTTCCCGCACTGCCCAGCACAGCAACGGCAC------------------------------------------------
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---------------------------------------------------GCACGGGCATGGGCATGGCATCGGCCACC
AGCTCCCGCCACCTCCTCCTTCTCG---TCCTTTGGCTCAGCGCGTCCGCGAGCACTGCCTGGGCCCATGGAGGTGGCGG
ACACGGCGACGGC---------GACGCGGACGGCGGCGCGAAGGCGAAGCCGGATCTGCGGGCGCCGGGGCTGGTGGCGG
TGAAGCTGTGGTGCCTGGCACTGGTGTTCGCGGGCACCCTGGCCGGCGGCGTGTCCCCCTACTTCATGCGGTGGAACGAG
GCGTTCCTGGCGCTGGGCACGCAGTTCGCCGGCGGGGTCATCCTCGGCACCGCCATGATGCACTTCCTCAGCGACGCCGA
CGAGACCTTCGGGGACCTCGCCCCCCACAGCGACTACCCGTTCGCCTCCATGCTCGCCTGCGCCGGGTACGTCCTCACCA
TGCTCGCCGAGTGCGTCGTCTCCTCCGTCGTCGCGCGCGGCCCCGGCCGGACCGCCCCG---------------------
AGTGCAGGTGAGCA------GCA---GCAGGTCCCACGTTCTCCGCTGAAACTAACTGCTATATCTGCGCATAC------
-------------------AGCAGCTGGCCGGCGGT--------GTAAAGGTGGCAGCTGCTCGTCGGGT----------
-------TAAATGCAAATTTGCTCCCTTTCTATTCCGGGGCGGGCGCTACGTGCTACGTGATTGGCAATCTTTTTTTTTT
TTGAAGGGGTGATTGGCAATCTTTCGATGCGCATTTTCACGGTCTTATCGTTACTCCTGCGATC---TTATTAGTCATGG
TTTAAACGTTCACTTGAGAATCCAACTCTGTTTACAAACTTCCAGGAGCGCTGGAGGAGGGCAAGCTGAGCAGCACCGAT
GACAACAGCATCGAACCACAAACATCTGTA---AGTGCAGCCTCCGAGTCCGGTGTTG---AT----TTGGCAGT-----
CGTTCAGACTACCACACAGCTCTGTGTACTCGCGCGTGCAG---------TATGTAA-TAACTTGGCGGTGCC-GCGCGT
--GCAGGACGCGCACGGACCG---------------TCGACTGCATCCATGCTGCGCAACGCGAGCACCATCGGCGACGG
CGTGCTCCTCATCGCCGCGCTCTGCTTCCACTCCGTCTTCGAAGGCATCGCCATTGGAGTTGCCGGTAAGACAGAGACAG
AGCTTGAAATTTCCTGGA----------TTTTGACTGCCATGAATG--AGAGGATC---TCTGCATCTTACTAGATGCGT
GTGTACCTCTCGACCCTGCTTCAGTCAC----------------------------------------------------
--------------------------------TGATTTTCATGCCTACTTCTACTTGATCCGGTCTTCGAATCGGCGA--
--------------------------------------------------------------------------------
TTA-----------------------------------------------------------------------------
------CTCGCAGAGACGGAAGCCGACGCGTGGAAGGCGCTGTGGACCATCAGCCTGCACAAGATCTTGGCCGCGATCGC
CATGGGCATCTCGCTGCTCCGGATGCTCCCCGACCGCCCCCTCCTCTCCTGCTTCGGCTACGCCTTCGCCTTCGCCGTCT
CCAGCTCCATCGGCGTCGCCGCCG-CATACTCGTCGACGCCACCACGGAGGGCCGGGTGGCCGACTGGATCTATGCCATC
TCCATGGGCCTCGCCACGGGCATCTTTGTCTACGTCTCCATCAACCACCTCCTCGCCAAGGGGTACAGGCCCCAGAGGCC
CGTCGCCGCCGACACCCCCGTCGGCCGGTGGCTCGCCGTTGCGCTTGGCGTCGGTGTCATCGCGGTCGTCATGATATGGG
ACGCCTGA------------------------------------------------------------------------
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>chr5B_963
------------GCCCAGCACAGCACCGGCAC------------------------------------------------
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---------------------------------------------------GCACGGGCATGGGCATGGCATCGGCCACC
AGCTCCCGCCACCTCCTCCTTCTCG---TCCTTTGGCTCAGCGCGTCCGCGAGCACCACCTGGGCCCATGGAGGCGGCGG
CGACCACGACGGC---------GACGCGGACGGCAGCGCGAAGGCGAAGCCGGATCTGCGGGCGCCGGGGCTGGTGGCGG
TGAAGCTGTGGTGCCTGGCGCCGGTCTTCGCGGGCACCCTGGCCGGCGGAGTGTCCCCCTACTTCATGCGGTGGAATGAG
GCGTTCCTGGCGCTGGGCACGCAGTTCGCCGTCGGCGC------------------------------------------
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AGTGCAGGTGAGCA------GCATCAGCAGGTCGCACGTTCTCCGCTGAAACTAACTGCTATATCTGCGCATAC------
-------------------ACCAGCTGGCCGGCGGT--------GTAAAGGTGGCAGCTGCGCCGTGCGCGTACGTTTGG
TTAAATCTAAATGCAAATTTGCTCCCTTTCTATTCTGGGGCGGGCGCTACGTGCTACGTGATTGGCAATCTTT-------
------------------------CGATGTGCATTTTCACGGCCTTATTGTTACTCCTGCGATCTTATTATTAGTCATGC
TTTAATG------TTCAGAATCCACCCCTGTTTACAAACTTCCAGGAGCGCTGGAGGAGGGCAAGCTGAGCAGCACCAAC
GGCAACAGCATCGAACCACAAACATCTGTA---AGTGCAGCCTCCGAACCAAGTGTTA---AT----TTGACAAC-----
CACTCGGACTAGCAGACAGCTCTGTGTATTTCGTACAGTATTGATGGAGATATGGAT-TGACTTGGTTGTGGT-GCACGT
A--CAGGACGCGCACGGACCG---------------TCGACTGCATCCATGCTGCGCAGCGCGAGCACCCTCGGCGACGG
CGTACTCCTCATCGCCGCGCTCTGCTTCCACTCCGTCTTCGAAGGCATCGCCGTCGGAGTTGCTGGTAAGATAGAGACAG
AGATTGATACTTCTTGAATC------------------------------------------------------------
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---------------------------------------------------------------------AA---------
-----AAGATGCTCGCGACTTCCTCGCGCATCC----------GCTTCAAGCAATTAGCATTTCA--GATTCCGTTGAAT
TTA-----------------------------------------------------------------------------
------CTTGCAGAGACGAAAGCCGACGCGTGGAAGGCGCTGTGGACCATCAGCCTGCACAAGATCTTGGCCGCGATCGC
CATGGGCATCTCGCTGCTGCCGATGCTCCCCAACCGCCCCCTCCTCTCTTGCTTCGGCTACGCCTTCGCCTTCGCCGTCT
CCAGCCCCATCGGCGTCGGCGTCGGCATACTCATCGACGCCACCACGGAGGGCCGGGTGGCCGACTGGATCTACGCCATC
TCCATGGGCCTCGCCACGGGCATCTTTGTCTACGTCTCCATCAACCACCTCCTCGCCAAGGGGTACAAGCCCCAGAGGCC
CGTCGCCGCCGACACGCCCCTCGGCCGGTGGCTGGCCGTCGTGCTTGGCGTCGGTGTCATCGCAGTCGTCATGATATGGG
ACGCCTGA------------------------------------------------------------------------
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>chr6B_2134
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-----------------------------------ATGCCTGCAAGTTGCAACGATCAATCAACTGTGAAACCGACATGC
GCTAGTTCTTAGCCAGCTCCGTCTCAGTCCAGTCATTGTCACGCATACTTTTCCTCGTTCCAGCCTTTGAA---------
-----CAGATGTTCTCAACTTCTTCGCGCGTCC----------ACTTCAATG----AGCATTTCA--GATTCCATTGAAA
TTAACCAGACAAAATATAAAGTCCTGGATAATCAATCTTGAATCTTCCTACAGTTCTGATCA----------------AC
ATTGGCCTTGCAGAGACCAAGGCGGACGCGTGGAAGGCGCTGTGGACGATCAGCCTGCACAAGGTGTTCGCGGCGGTGGC
CATGGGCATCGCGCTGCTCCGGATGCTGCCCAACCGGCCGCTGCTCTCCTGCTTCGCCTACGCCTTCGCGTTCGCCGTCT
CCAGCCCCATCGGCGTCGGCGCCGGCATCGCCATCGACGCCACCACGCAGGGCGCCGTGGCCGACTGGATCTTCGCCGTC
TCCATGGGCCTCGCCACCGGCATCTTCATCTACGTCTCCGTCAACCACCTCCTCTCCAAGGGGTACACGCCCCAGAGGCC
CGTCAAAGCCGACACGCCCCTCGGCCGCTGGCTCGCCGTCGTGCTCGGCGTCGGGGTCATCGCCGTCGTCATGATATGGG
ACACCTGATCCTGATCGTGTGGG-TTGCGTTGGTCCGGTGATGGTTTGGTAATTAGGTTTGGACGTTCGTTCATAG----
---TATTTCATAGTGGAGGGATATATACTTACTAGCTTTAATGTGTAGACTACTACTGCCTCATAGTACATGTGTTGT--
------------TTACATAATGCTCCCTATGTTAAAAAATATAAGATGTTTTAGATATTTCAATAATAACTACACACGGA
CTGAAATAAGTGAACACACTAAAATGCATCTATATATACATCCAAATCAAAAAAAATGTTAAAACATCTTATAATAGCAA
ACAAATGGGTAGTAAATTCCGATGATTCTCTTCATACCAGGTGAAAACACGCAACAAAAGTGAAATTCTCGTTTATTTAC
-ACTGGGAGCATGCCACAAGTCCAACTAAAAAAAGGACATCATAGACGCGGAGTTTCTGCTCCCGGGCTCATCTGCACCC
GTGCTCAGAAAAAAATCAAAACAAATACTAGCAAAATTCATTTTTTTGGTATGGTAGATAATTTGATGCGTGAGGTCTGC
TCCAAATATCACAAAAAAGACAAATTCAAGGTATGTAACTATTCACGCACTGTTCTGACCCGATTTGTCTTTTTACCGAG
AGCTGCTCAGATATCCAAATGAGTTGAAATTTGAAGCAAACCTCACGCATCAAATTATCTACCACACACAAAAAAAATGT
ATTTGTTTTTAAATTTTTTTCTGAGCAGGAGCACATGAGCCTGGGCACCGAGTTGGATTTCCGATCATAATCCTTCCTTT
AGTTCCCCCCACACAACG-ATCACA----------GCAGTCAAGCAGACTACCCACAGCA---CCAATACACCAGCAAAC
CAATGAAGAGTTCCTGGCTCTCGAGGAATTGAACACAAGATGCACAACCCCCAGAC------------------------
----------------------------------CAAACCCAAAACACCCGGGACCAACATGG----CCATAACTTACAG
ATATTGCTGAAGTTCCCAGCGCGGAAATGGCTTCACAGCTTAATAACACTCAGTAGCTATACAGGAACAACAGATCAGGG
CTAAAAACTGATCCGTGGCGCGTTTTCGGAGAACCG-CTTTCAGACAGACAAAATTTGGCAGCAGCCGTTGTCGTGCTCG
CTTGCTTGGCCGGTGGCTGCTTGCCCGCTCTCCTACTGCAGGATCTGAATGACGGATGTGGCGTCCTACTTCTTTGCCGA
TGCATTACGAAGCTTCTCGAAGATGGGGTGTCCCAGGATCTCTTTCGCAGACGGCCGCCTCATGGGATCAGGGTCCATCA
TCGACTGAAAGTAAGCAACAAGTGGGAGTGAGCAAGCATGTGAAATGCCTGTCATAAGGGAGG-AAATCTTTCTGGGACT
TGAATGCTAGAGTTCTTTAAGTTGCCAAGCAACTGCAAATTGCAGCTCTGTAGATAGGTCATAGCTGTGATGGTAAATCC
CTTCACCCAAAGAATCAACTGAATT---GAACAAAGCTAAAGGTGAAAGAAGTTCATTCATGTGATGCTTCTTTATATGA
TATGATGGTCATGAGTAACA
>chr6D_3008
ATTTACG-------------------------------------------------------------------------
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--CTGGGAGCATGCCACAAGTCCAACTGAAAAAAGGACATCAATG-----------------------------------
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----------------------------------------------------------------------TCCTTCATTT
AGTTCCCCCCACACAACCGATCACAACACCAAATGGCAGTCAAGCAGACTGCCCACAGCATCACCAATACACCAGCAAAC
AAATGAAGAATTCCTGGCTCTCCAGGAATTCAACGGAAGATGCACAAGCCCAAACCAGCCACCAATGCGGCCATAAGCCC
ATAACTTACAGATATTGCTCGAACAGAAGATGCACAAGCCCAAACCAGCACCAACGCGGCCATAAGCCCATAACTTACAG
ATATTGCTCAAGTTCCCAGCGCAGAAATGGCTTCACAGCTTGAGAATCCTCGGTAGCTATACAGAAACAATAGATCAGGG
GGGG-AAATGACCCGTGGCGCATTTTTGGAGAGCCTTCTTTCAGACAGACAAAATTTGGCAGCAGCCGATGTTGC-----
------------------GCTTGCCCGCTCTCCTACTGCAGGATCTGAATGACAGATGTGGCATCCTACTTCTTTGCCGA
GGCATTACGCAGCTTCTCAAAGATGGGGTGCCCCAGGATCTCTTTCGCAGACGGCCGCCTCACAGGATCAGGGTCCATCA
TCGACTGAAAGTGAGCAGAAAGTGGGAGTGAGCAAGCATGTGAAATACCTGTCATAAGGCAGAAAAATCTTTCTGGGACT
TAAATGCTAGAGTTCTTTAAGGTGCCAAGCAACTGCAAATTGCAGCTCTGTAGATAGGTCATAGCTGTAATGGTGACGCC
CTTGACCCAAAGAAAGAATCGACTGATGGAACAAAGCTAAAGGTGAAATAAGTTCATTCATGTGATACTTTCTTT----A
TATGATGGTCATGAGTAACA
>SNPs
--SS---SS-SSSSS-SSSSSSSSSSS-S--SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-------------------
-------------------------------S--------S---S------------S----------------------
----S-------------------------S------------------SS---------------------S-------
-----------------------------------------------S-------------------S------------
--S-S-------------------------------------S-------------S-S-SSSSSSSSSSSS--------
----------SS-S------------------------------------------------------------------
-----------SS-------S-------------S-------S-------------------------------------
-S-S----S----SS-----S---S---------S-----S-----------------------------SSS-------
---------------------S----------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------S------------------------------------S--
-------------S------------------------------------------------------------------
-----------S--------------------SS-S-----SS-SS--------------S-------------------
-S------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------S----------------------------------------
--------------------------------------------------------------------------------
-S-----------S------------------------------------------------------------------
------S--SSSS-------------------------------------------------------------------
------------------------S----S--------------------------------------------------
-------S------SSS---S-------------S-----------S--S------------------------------
----SS----------------S--------------S------------------------------S-------S---
-------------------S------------------------------------------------------------
---------S-------SSSS---SS-----------------------------------------------S------
--------------------------------------------------------------------------------
------------------------------S------------------------------------------------S
---------------------------S--------S------SS------------S----------------------
-------SS---S-----------------------------------------------------------------S-
--------------------------S-S-------------------------------S-----------S--S-SSS
SSSSS----------------------------S-S--S--------------------------SS-----------S-
--------------S-S---S---SS-------------------------------S-SS-SSSSSSSSSSSSSSSS--
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------S---------------------------------------------S-------------S-----------
--------------------------------------------------------------------------------
------------------------------------------------------S--------------S----------
----------S-SSSSSSS-SS-SS-------------------------------S------------------SSSSS
SSS------------S--------SS------------S-----------------------------------------
------SS-------------S--S-S-----------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------SSSSSS-S---S--S-------S----------
S----S--SS----------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------S---------S---------S--------------------S---S-----S--------S-------------
------------------------------------S-------------------------------------------
--------------------------------------------------S-----------------------------
---------S-------S-----S--------------------------------------------------------
-S--------------------------------------------------------------------------S-S-
--S-------S--------------S---------------------SS---------S--S------------------
---------------------S----------S-------------S---------------------------------
-------------------S------S-----------------------S---S----------S--------S-----
--------------SS----------------S-----------------------S--------------S------S-
-S--------------S-----------S------------------------------------S--------------
--------------------
>forward_652
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------------------------------------------------------------------------TCCCGGCC
TACTTCCACTAA--------------------------------------------------------------------
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>reverse_2632
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-----------------------------------------------------------------------CCTGTCGAC
ATTGGCATTGC---------------------------------------------------------------------
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>forward_2240
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------------------------------------------------------------CGCCGGTAAGAGAGACTCAC
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>reverse_4090
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---------GAGTTCCCTGCGCACAAATG---------------------------------------------------
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--------------------
