AutoCloner

Multiple sequence alignment - TraesCS6A01G096300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS6A01G096300	chr6A	100.000	2525	0	0	1	2525	63611355	63608831	0.000000e+00	4663.0
1	TraesCS6A01G096300	chr6D	89.718	2655	94	85	4	2525	52725502	52722894	0.000000e+00	3225.0
2	TraesCS6A01G096300	chr6B	91.369	1958	76	43	578	2480	119849749	119847830	0.000000e+00	2593.0
3	TraesCS6A01G096300	chr6B	81.575	597	36	42	1	537	119850422	119849840	2.320000e-115	425.0
4	TraesCS6A01G096300	chr7B	87.410	556	34	15	1792	2331	387895612	387896147	7.720000e-170	606.0
5	TraesCS6A01G096300	chr7B	85.463	227	16	5	1000	1226	547711306	547711515	1.180000e-53	220.0
6	TraesCS6A01G096300	chr2B	87.365	554	33	15	1792	2329	361867420	361866888	3.590000e-168	601.0
7	TraesCS6A01G096300	chr2B	100.000	36	0	0	1019	1054	34588163	34588128	1.620000e-07	67.6
8	TraesCS6A01G096300	chr7D	88.889	135	4	4	1638	1761	37275867	37276001	3.360000e-34	156.0
9	TraesCS6A01G096300	chr7D	88.298	94	5	1	994	1087	420082363	420082450	9.550000e-20	108.0
10	TraesCS6A01G096300	chr5D	88.889	135	4	4	1638	1761	297792759	297792625	3.360000e-34	156.0
11	TraesCS6A01G096300	chr5D	88.889	135	4	4	1638	1761	384073755	384073889	3.360000e-34	156.0
12	TraesCS6A01G096300	chr5D	98.039	51	1	0	721	771	285247438	285247488	3.460000e-14	89.8
13	TraesCS6A01G096300	chr5D	90.000	50	5	0	726	775	113391895	113391846	5.830000e-07	65.8
14	TraesCS6A01G096300	chr3D	88.889	135	4	4	1638	1761	70729664	70729798	3.360000e-34	156.0
15	TraesCS6A01G096300	chr3D	88.148	135	5	4	1638	1761	443945626	443945760	1.560000e-32	150.0
16	TraesCS6A01G096300	chr3D	98.182	55	1	0	721	775	252334799	252334853	2.070000e-16	97.1
17	TraesCS6A01G096300	chr2D	88.889	135	4	4	1638	1761	106236306	106236172	3.360000e-34	156.0
18	TraesCS6A01G096300	chr2D	88.889	135	4	4	1638	1761	422777646	422777512	3.360000e-34	156.0
19	TraesCS6A01G096300	chr2D	80.247	162	8	5	1843	1980	427947449	427947610	1.600000e-17	100.0
20	TraesCS6A01G096300	chr1D	85.621	153	13	2	982	1134	413940935	413941078	4.350000e-33	152.0
21	TraesCS6A01G096300	chr3A	87.879	132	7	5	1003	1134	531906055	531905933	2.020000e-31	147.0
22	TraesCS6A01G096300	chr3A	80.864	162	7	7	1843	1980	530202753	530202914	3.440000e-19	106.0
23	TraesCS6A01G096300	chr3A	98.182	55	1	0	721	775	332220139	332220085	2.070000e-16	97.1
24	TraesCS6A01G096300	chr1A	85.816	141	11	3	994	1134	467151152	467151283	9.420000e-30	141.0
25	TraesCS6A01G096300	chr4A	89.412	85	3	1	1003	1087	613673563	613673485	4.440000e-18	102.0
26	TraesCS6A01G096300	chr3B	98.182	55	1	0	721	775	313808032	313808086	2.070000e-16	97.1
27	TraesCS6A01G096300	chr5A	79.630	162	9	9	1843	1980	664983813	664983974	7.440000e-16	95.3
28	TraesCS6A01G096300	chr5A	98.039	51	1	0	721	771	377119607	377119657	3.460000e-14	89.8
29	TraesCS6A01G096300	chr5B	98.039	51	1	0	721	771	322858711	322858761	3.460000e-14	89.8

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS6A01G096300	chr6A	63608831	63611355	2524	True	4663	4663	100.000	1	2525	1	chr6A.!!$R1	2524
1	TraesCS6A01G096300	chr6D	52722894	52725502	2608	True	3225	3225	89.718	4	2525	1	chr6D.!!$R1	2521
2	TraesCS6A01G096300	chr6B	119847830	119850422	2592	True	1509	2593	86.472	1	2480	2	chr6B.!!$R1	2479
3	TraesCS6A01G096300	chr7B	387895612	387896147	535	False	606	606	87.410	1792	2331	1	chr7B.!!$F1	539
4	TraesCS6A01G096300	chr2B	361866888	361867420	532	True	601	601	87.365	1792	2329	1	chr2B.!!$R2	537

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
474	566	0.041833	TTCCTCCTCCTCCACTCCAG	59.958	60.0	0.00	0.00	0.00	3.86	F
902	1081	0.528033	TCGTCGTCGCCTCTCTAGAG	60.528	60.0	13.98	13.98	37.59	2.43	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1472	1665	0.030603	GGGGGAGGATCTGAAGAGGT	60.031	60.0	0.0	0.0	33.73	3.85	R
2410	2632	0.321210	CATGCACAACCGTCCACCTA	60.321	55.0	0.0	0.0	0.00	3.08	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
91	118	2.548295	GGCCTCCTCTCTAGACGCG	61.548	68.421	3.53	3.53	0.00	6.01
164	193	0.463654	AGCCAAGTGAAGTGAACGCA	60.464	50.000	0.00	0.00	0.00	5.24
319	382	2.045242	CTCTGCTGTGCTGCCCAT	60.045	61.111	0.00	0.00	0.00	4.00
375	465	0.611200	ATCACATTCCCGTTCGTCCA	59.389	50.000	0.00	0.00	0.00	4.02
377	467	0.601576	CACATTCCCGTTCGTCCACA	60.602	55.000	0.00	0.00	0.00	4.17
474	566	0.041833	TTCCTCCTCCTCCACTCCAG	59.958	60.000	0.00	0.00	0.00	3.86
507	609	1.447945	CAGCGAGAGAGACAGAGTCA	58.552	55.000	0.00	0.00	34.60	3.41
518	620	4.162320	AGAGACAGAGTCAGTCTAGAGAGG	59.838	50.000	17.27	0.00	45.79	3.69
521	623	3.589735	ACAGAGTCAGTCTAGAGAGGGAA	59.410	47.826	0.00	0.00	32.51	3.97
522	624	4.199310	CAGAGTCAGTCTAGAGAGGGAAG	58.801	52.174	0.00	0.00	32.51	3.46
523	625	4.080582	CAGAGTCAGTCTAGAGAGGGAAGA	60.081	50.000	0.00	0.00	32.51	2.87
524	626	4.164221	AGAGTCAGTCTAGAGAGGGAAGAG	59.836	50.000	0.00	0.00	31.71	2.85
525	627	4.108570	AGTCAGTCTAGAGAGGGAAGAGA	58.891	47.826	0.00	0.00	0.00	3.10
528	630	3.632145	CAGTCTAGAGAGGGAAGAGAAGC	59.368	52.174	0.00	0.00	0.00	3.86
529	631	3.268334	AGTCTAGAGAGGGAAGAGAAGCA	59.732	47.826	0.00	0.00	0.00	3.91
530	632	3.632145	GTCTAGAGAGGGAAGAGAAGCAG	59.368	52.174	0.00	0.00	0.00	4.24
543	706	2.232298	GAAGCAGGGAGAGGTCGGTG	62.232	65.000	0.00	0.00	0.00	4.94
582	749	2.287849	GCTTGGTTGGTTGCTTCTCTTC	60.288	50.000	0.00	0.00	0.00	2.87
788	955	1.760613	CTCATAAACTACTCGCCCCCA	59.239	52.381	0.00	0.00	0.00	4.96
789	956	2.368875	CTCATAAACTACTCGCCCCCAT	59.631	50.000	0.00	0.00	0.00	4.00
790	957	3.576982	CTCATAAACTACTCGCCCCCATA	59.423	47.826	0.00	0.00	0.00	2.74
896	1075	3.786586	GTCGTCGTCGTCGCCTCT	61.787	66.667	7.01	0.00	38.33	3.69
897	1076	3.485431	TCGTCGTCGTCGCCTCTC	61.485	66.667	7.01	0.00	38.33	3.20
898	1077	3.488978	CGTCGTCGTCGCCTCTCT	61.489	66.667	0.00	0.00	36.96	3.10
899	1078	2.163390	CGTCGTCGTCGCCTCTCTA	61.163	63.158	0.00	0.00	36.96	2.43
900	1079	1.637402	GTCGTCGTCGCCTCTCTAG	59.363	63.158	0.00	0.00	36.96	2.43
901	1080	0.805322	GTCGTCGTCGCCTCTCTAGA	60.805	60.000	0.00	0.00	36.96	2.43
902	1081	0.528033	TCGTCGTCGCCTCTCTAGAG	60.528	60.000	13.98	13.98	37.59	2.43
972	1151	3.525268	ACAACAACAAAGGAAAGCAGG	57.475	42.857	0.00	0.00	0.00	4.85
995	1179	4.065281	CCTGCCTGCTTGCTTGGC	62.065	66.667	17.89	17.89	46.26	4.52
1435	1628	3.646715	CCACCACCACCGACCCAT	61.647	66.667	0.00	0.00	0.00	4.00
1567	1762	4.144681	GCACAAGAGCGAGCGCAG	62.145	66.667	17.68	3.93	44.88	5.18
1619	1817	6.547880	TGCTTCTGGTGTTTCAGGTTAATTAA	59.452	34.615	0.00	0.00	35.58	1.40
1620	1818	6.861572	GCTTCTGGTGTTTCAGGTTAATTAAC	59.138	38.462	18.30	18.30	35.58	2.01
1624	1826	8.434392	TCTGGTGTTTCAGGTTAATTAACTACT	58.566	33.333	23.89	13.16	36.47	2.57
1626	1828	9.492973	TGGTGTTTCAGGTTAATTAACTACTAC	57.507	33.333	23.89	16.42	36.47	2.73
1660	1862	0.594602	GTGGAGTTTTTACCGCACCC	59.405	55.000	0.00	0.00	36.77	4.61
1772	1974	3.472263	CATGCATGCATCACCATCG	57.528	52.632	30.07	13.50	33.90	3.84
1929	2134	9.459640	CTGCCATGAATGTATTTCTCTTATTTG	57.540	33.333	0.00	0.00	35.23	2.32
1948	2166	4.981806	TTGTGTGTTTTTCCTTCTCTGG	57.018	40.909	0.00	0.00	0.00	3.86
1969	2187	2.097142	GCTCTGAATTGTGATGTGCTCC	59.903	50.000	0.00	0.00	0.00	4.70
1997	2215	4.599041	AGTGCCTTTTACTGCCATGAATA	58.401	39.130	0.00	0.00	0.00	1.75
1998	2216	5.016173	AGTGCCTTTTACTGCCATGAATAA	58.984	37.500	0.00	0.00	0.00	1.40
1999	2217	5.658190	AGTGCCTTTTACTGCCATGAATAAT	59.342	36.000	0.00	0.00	0.00	1.28
2029	2247	0.036010	TGCTACCTTGGAGCAGCTTC	60.036	55.000	0.00	0.00	44.89	3.86
2072	2290	6.925610	TGTGATGTGCTCTGGTAAATAATC	57.074	37.500	0.00	0.00	0.00	1.75
2079	2297	5.992217	GTGCTCTGGTAAATAATCCCACTAG	59.008	44.000	0.00	0.00	0.00	2.57
2094	2312	5.767670	TCCCACTAGTTACTATCTTGCTCT	58.232	41.667	0.00	0.00	0.00	4.09
2095	2313	5.594725	TCCCACTAGTTACTATCTTGCTCTG	59.405	44.000	0.00	0.00	0.00	3.35
2096	2314	5.285651	CCACTAGTTACTATCTTGCTCTGC	58.714	45.833	0.00	0.00	0.00	4.26
2097	2315	5.163509	CCACTAGTTACTATCTTGCTCTGCA	60.164	44.000	0.00	0.00	36.47	4.41
2179	2399	2.807967	TCACATTTCACAGCTACTGCAC	59.192	45.455	0.00	0.00	42.74	4.57
2192	2412	3.242543	GCTACTGCACAGTACATTCATGC	60.243	47.826	6.41	3.75	42.54	4.06
2246	2467	3.988976	ATCCTCATGATATTCCACCCG	57.011	47.619	0.00	0.00	0.00	5.28
2290	2511	0.031857	CCAGAGAGTGATAGCAGCCG	59.968	60.000	0.00	0.00	0.00	5.52
2341	2562	3.323403	TGGAATAAAAACAACTGGCCCAG	59.677	43.478	9.83	9.83	37.52	4.45
2344	2565	5.405935	AATAAAAACAACTGGCCCAGATC	57.594	39.130	19.90	0.00	35.18	2.75
2348	2569	2.206576	ACAACTGGCCCAGATCTTTC	57.793	50.000	19.90	0.00	35.18	2.62
2384	2606	8.450578	TTCGCCAGTTTTGATATATTTCTCAT	57.549	30.769	0.00	0.00	0.00	2.90
2410	2632	3.769739	TTCTCAGTACACAGCACCAAT	57.230	42.857	0.00	0.00	0.00	3.16
2465	2687	6.538263	AGATTCTCCAATTTACCCTCTATGC	58.462	40.000	0.00	0.00	0.00	3.14
2467	2689	5.552870	TCTCCAATTTACCCTCTATGCTC	57.447	43.478	0.00	0.00	0.00	4.26
2487	2709	2.021042	TCCCCCTCCACTATTGATTCCT	60.021	50.000	0.00	0.00	0.00	3.36
2509	2731	5.583854	CCTGAGAATTCTGATTGTACCACAG	59.416	44.000	14.00	9.31	0.00	3.66

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
91	118	3.044305	GTGTGCTGACTGGCGGAC	61.044	66.667	0.00	0.00	34.52	4.79
223	271	0.755686	GAGTGGATCCGAGGCTGAAT	59.244	55.000	7.39	0.00	0.00	2.57
276	324	0.674581	TGCAGGAATGGCTGAACGAG	60.675	55.000	0.00	0.00	0.00	4.18
277	325	0.035152	ATGCAGGAATGGCTGAACGA	60.035	50.000	0.00	0.00	0.00	3.85
280	328	1.324740	GGCATGCAGGAATGGCTGAA	61.325	55.000	21.36	0.00	46.63	3.02
316	379	2.350522	GAATGGGAATCCGATCGATGG	58.649	52.381	18.66	0.00	35.24	3.51
318	381	1.279271	GGGAATGGGAATCCGATCGAT	59.721	52.381	18.66	0.00	37.87	3.59
319	382	0.685097	GGGAATGGGAATCCGATCGA	59.315	55.000	18.66	2.91	37.87	3.59
359	449	0.601841	GTGTGGACGAACGGGAATGT	60.602	55.000	0.00	0.00	0.00	2.71
507	609	3.268334	TGCTTCTCTTCCCTCTCTAGACT	59.732	47.826	0.00	0.00	0.00	3.24
518	620	0.829990	CCTCTCCCTGCTTCTCTTCC	59.170	60.000	0.00	0.00	0.00	3.46
521	623	0.682855	CGACCTCTCCCTGCTTCTCT	60.683	60.000	0.00	0.00	0.00	3.10
522	624	1.671901	CCGACCTCTCCCTGCTTCTC	61.672	65.000	0.00	0.00	0.00	2.87
523	625	1.684049	CCGACCTCTCCCTGCTTCT	60.684	63.158	0.00	0.00	0.00	2.85
524	626	1.985116	ACCGACCTCTCCCTGCTTC	60.985	63.158	0.00	0.00	0.00	3.86
525	627	2.120718	ACCGACCTCTCCCTGCTT	59.879	61.111	0.00	0.00	0.00	3.91
528	630	0.972983	ATGACACCGACCTCTCCCTG	60.973	60.000	0.00	0.00	0.00	4.45
529	631	0.684805	GATGACACCGACCTCTCCCT	60.685	60.000	0.00	0.00	0.00	4.20
530	632	1.677637	GGATGACACCGACCTCTCCC	61.678	65.000	0.00	0.00	0.00	4.30
543	706	1.510480	GCTAGGCGGCAATGGATGAC	61.510	60.000	13.08	0.00	0.00	3.06
582	749	4.426313	GGGTTGCCTCCGGGAAGG	62.426	72.222	0.00	2.45	42.97	3.46
788	955	1.710709	AGAGGAGGGGGAGGGCTAT	60.711	63.158	0.00	0.00	0.00	2.97
789	956	2.288847	AGAGGAGGGGGAGGGCTA	60.289	66.667	0.00	0.00	0.00	3.93
790	957	3.773154	GAGAGGAGGGGGAGGGCT	61.773	72.222	0.00	0.00	0.00	5.19
894	1073	4.340097	CGGACTGACTCTAGACTCTAGAGA	59.660	50.000	35.23	20.63	42.68	3.10
896	1075	4.025360	ACGGACTGACTCTAGACTCTAGA	58.975	47.826	14.05	14.05	0.00	2.43
897	1076	4.395959	ACGGACTGACTCTAGACTCTAG	57.604	50.000	6.74	6.74	0.00	2.43
898	1077	4.202141	GCTACGGACTGACTCTAGACTCTA	60.202	50.000	0.00	0.00	0.00	2.43
899	1078	3.431207	GCTACGGACTGACTCTAGACTCT	60.431	52.174	0.00	0.00	0.00	3.24
900	1079	2.867975	GCTACGGACTGACTCTAGACTC	59.132	54.545	0.00	0.00	0.00	3.36
901	1080	2.502538	AGCTACGGACTGACTCTAGACT	59.497	50.000	0.00	0.00	0.00	3.24
902	1081	2.610374	CAGCTACGGACTGACTCTAGAC	59.390	54.545	0.00	0.00	37.32	2.59
972	1151	3.060615	CAAGCAGGCAGGCACTCC	61.061	66.667	0.00	0.00	34.60	3.85
1434	1627	3.458163	TCGAAGCCGCCGAGGAAT	61.458	61.111	0.91	0.00	45.00	3.01
1435	1628	4.430765	GTCGAAGCCGCCGAGGAA	62.431	66.667	0.91	0.00	45.00	3.36
1461	1654	1.062880	CTGAAGAGGTAGTCGTCGAGC	59.937	57.143	0.00	0.00	36.52	5.03
1462	1655	2.619147	TCTGAAGAGGTAGTCGTCGAG	58.381	52.381	0.00	0.00	36.52	4.04
1467	1660	2.882137	GGAGGATCTGAAGAGGTAGTCG	59.118	54.545	0.00	0.00	33.73	4.18
1472	1665	0.030603	GGGGGAGGATCTGAAGAGGT	60.031	60.000	0.00	0.00	33.73	3.85
1541	1734	2.952245	CTCTTGTGCTGCTGCCAC	59.048	61.111	13.47	11.36	38.71	5.01
1588	1786	2.158623	TGAAACACCAGAAGCATCAGGT	60.159	45.455	0.00	0.00	45.55	4.00
1619	1817	3.418995	TGCTCTCCGAGTTTGTAGTAGT	58.581	45.455	0.00	0.00	31.39	2.73
1620	1818	3.440872	ACTGCTCTCCGAGTTTGTAGTAG	59.559	47.826	0.00	0.00	31.39	2.57
1624	1826	1.272490	CCACTGCTCTCCGAGTTTGTA	59.728	52.381	0.00	0.00	31.39	2.41
1626	1828	0.318441	TCCACTGCTCTCCGAGTTTG	59.682	55.000	0.00	0.00	31.39	2.93
1632	1834	1.884235	AAAAACTCCACTGCTCTCCG	58.116	50.000	0.00	0.00	0.00	4.63
1640	1842	1.601166	GGTGCGGTAAAAACTCCACT	58.399	50.000	0.00	0.00	0.00	4.00
1929	2134	2.952310	AGCCAGAGAAGGAAAAACACAC	59.048	45.455	0.00	0.00	0.00	3.82
1932	2137	3.136443	TCAGAGCCAGAGAAGGAAAAACA	59.864	43.478	0.00	0.00	0.00	2.83
1948	2166	2.097142	GGAGCACATCACAATTCAGAGC	59.903	50.000	0.00	0.00	0.00	4.09
1997	2215	6.721318	TCCAAGGTAGCAGAAATAAGACATT	58.279	36.000	0.00	0.00	0.00	2.71
1998	2216	6.313519	TCCAAGGTAGCAGAAATAAGACAT	57.686	37.500	0.00	0.00	0.00	3.06
1999	2217	5.734720	CTCCAAGGTAGCAGAAATAAGACA	58.265	41.667	0.00	0.00	0.00	3.41
2025	2243	7.704047	ACAATTCAAAGACAGAAGAAAAGAAGC	59.296	33.333	0.00	0.00	0.00	3.86
2029	2247	8.965172	CATCACAATTCAAAGACAGAAGAAAAG	58.035	33.333	0.00	0.00	0.00	2.27
2072	2290	5.737635	GCAGAGCAAGATAGTAACTAGTGGG	60.738	48.000	0.00	0.00	0.00	4.61
2079	2297	3.249559	GGCATGCAGAGCAAGATAGTAAC	59.750	47.826	21.36	0.00	43.62	2.50
2094	2312	2.290896	ACTAGTTTAAGCCAGGCATGCA	60.291	45.455	21.36	0.00	0.00	3.96
2095	2313	2.369394	ACTAGTTTAAGCCAGGCATGC	58.631	47.619	15.80	9.90	0.00	4.06
2096	2314	4.458989	TGAAACTAGTTTAAGCCAGGCATG	59.541	41.667	20.58	0.00	32.11	4.06
2097	2315	4.459337	GTGAAACTAGTTTAAGCCAGGCAT	59.541	41.667	20.58	3.67	32.11	4.40
2179	2399	1.941975	TGGCATCGCATGAATGTACTG	59.058	47.619	0.00	0.00	0.00	2.74
2246	2467	1.627297	CCCTCCCCACTCTACCTTGC	61.627	65.000	0.00	0.00	0.00	4.01
2261	2482	5.279256	GCTATCACTCTCTGGTTATTCCCTC	60.279	48.000	0.00	0.00	34.77	4.30
2290	2511	8.506168	TCAATATATTCCAGTCACAAAAGACC	57.494	34.615	0.00	0.00	39.34	3.85
2354	2575	9.515020	GAAATATATCAAAACTGGCGAATGAAA	57.485	29.630	0.00	0.00	0.00	2.69
2384	2606	6.058833	TGGTGCTGTGTACTGAGAAAAATTA	58.941	36.000	0.00	0.00	0.00	1.40
2410	2632	0.321210	CATGCACAACCGTCCACCTA	60.321	55.000	0.00	0.00	0.00	3.08
2465	2687	2.373502	GGAATCAATAGTGGAGGGGGAG	59.626	54.545	0.00	0.00	0.00	4.30
2467	2689	2.107204	CAGGAATCAATAGTGGAGGGGG	59.893	54.545	0.00	0.00	0.00	5.40
2487	2709	5.491070	CCTGTGGTACAATCAGAATTCTCA	58.509	41.667	4.57	0.00	44.16	3.27

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.