>input_sequence_77439
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---------------------------------------------------------------ATGGCGTCCTCC-----
-AGCGGGAGCGGGAGCACGGGCTCGCTGTCGACGGCG---GCGGCCATGGCGATGGCGGCCGCGTCGGGCACGGAGGAGG
AGATGCGGGCGCTCATGGAGCAGCGCCGGGCCAAGCGGATGCTCTCCAACCGGGAGTCGGCGCGCCGCTCGCGGATGCGC
AAGCAGCGCCACCTCGACGACCTCGCCGCGCAGGCGGCGCACCTGCGCCGCGAGAACGCGCACGTCGCCGCCGCGCTCGG
CCTCACCGCGCGGGGCCTCCAGGCCGTCGACGCCGAGAACGCCGTCCTCCGCACCCAGGCCGCCGAGCTCGCCGCGCGCC
TCCACTCGCTCAACGACATCATCGCCTGCATGAGCGCCAGCAACAACACCGCCGCCGCCGTCGCGCTCACCGTCGCCGCA
GCAGCCACCGCCACCACCACCGACCCATTCCTCGGCGGCTTCGACGGCGCGTCGCTCGACGACTACCTCTTCAGATCCTC
CCCCGAGATGTTCATGTTCCCAGCCCTGCAAAGCTAG-------------------------------------------
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>chr6A_1_TraesCS6A01G096300
CCGGCTTTCGGCGCATCTTCCCGTGGC-----------AGAGAGA----GGCGCCGGCGC----CGGTAAGTTCGAGAG-
------GTTTCGACACGGAGGCCTCCTCTCTAGACGCGTCCGCCAGTCAGCACACGGGGCCTACCGCCTACC--AGCTAC
AGCAGTGGCGCCGAGCCAAGTGAAGTGAACGCACCTG-----------GGC----GGCATGGGCGC----GTGAGGCCAA
GTGAGGTCAGCGTGATTTCCAGCTGAGCTGATTCAGCCTCGGATCCACTCCGACCGGCCGCACGTGCGACCGCGCTCCCC
GCGCTCGT---------------TCAGCCATTCCTGCATGCCCGCTCTGCTGTGCTGCCCATC----------------G
ATCG-----------GATTCCCATTCCCACCCTCCCCCCAGCGGAATCACATTCCCGTTCGTCCACACCCGAGCCACCGG
CCGGCTCTATAAATCCCTCCCCGCTCCCTGCCCCAACACCCCCCTCCTCCTCCTCC--CACTCTTCTTCCTCCTCCTCCA
CTCCAG--CTCCCCTGCACCGCAGCGAGAGAGA--------CAGAGTCAGTCTAGAGAGGGAAGAGAAGCAGG-------
-------------------------------------------G-----------AGAGGTCGGTG----TCATCCATTG
CCGCCTAGCTTGGTTGGTTGCTTCTCTTCCTTCCCGGAGGCAACCCAAGAAAGCGGAGCGCACATGCTTCCCCGGGTCCG
CCTCAGAGTCCCCCGATGTCGCCGGTGATCAGCGAGATCCTACTCTCCGGGTTTATGATCAACTCCACACTCCGGCGCCG
AACCCACCTCGTCCAGTCCTTCTCCGTCGTCTTCCTCTACTGGTTCTATGTCTTCTCATAAACTACTCGCCCCCATA---
GCCCTCCCCCTCCTCTCCCTCCTCCTCCT------TTAGCCCTCCTGCTCATCCCTTCAAGCTCCCCTCGTCCCACACAC
TCGCTTACTCTCTCG---TCGTCGTCGTCGCCTCTCTAGAGTCTAGAGTCAGTCCGTAGCTGGTAATCAAGTCGATCTTT
GGTTCTTGCAACAACAACAAAGGAAAGCAGGGAG----TGCCTGCCTGCTTGCTTG-GCGGCGATGGCGTCCTCC-----
-AGCGGGAGCGGGAGCACGGGCTCGCTGTCGACGGCG---GCGGCCATGGCGATGGCGGCCGCGTCGGGCACGGAGGAGG
AGATGCGGGCGCTCATGGAGCAGCGCCGGGCCAAGCGGATGCTCTCCAACCGGGAGTCGGCGCGCCGCTCGCGGATGCGC
AAGCAGCGCCACCTCGACGACCTCGCCGCGCAGGCGGCGCACCTGCGCCGCGAGAACGCGCACGTCGCCGCCGCGCTCGG
CCTCACCGCGCGGGGCCTCCAGGCCGTCGACGCCGAGAACGCCGTCCTCCGCACCCAGGCCGCCGAGCTCGCCGCGCGCC
TCCACTCGCTCAACGACATCATCGCCTGCATGAGCGCCAGCAACAACACCGCCGCCGCCGTCGCGCTCACCGTCGCCGCA
GCAGCCACCGCCACCACCACCGACCCATTCCTCGGCGGCTTCGACGGCGCGTCGCTCGACGACTACCTCTTCAGATCCTC
CCCCGAGATGTTCATGTTCCCAGCCCTGCAAAGCTAGCACCCACGCCACGGCCGTGGCAGCAGCACAAGAGCGA--GCGC
AGCAAAAGAGATCATCT---TTTTTACCTGATGCTTCTGGTGTTTCAGGTTAATTAAC----TACTACAAACTCGGAGAG
CAGTGGAGTTTTTACCGCACCCAACTAAGCTAGCTGCTGGGGTTAATTAGTTTATAATTATCATGTGTAATCTGAACTGG
TGTGTGTACCAAGTGATGATGGTTCTTAAGCTTAGCATGCATGCATCACCATCGATCATGTGATCCCCTATGTAAGAAGG
AAGAAGCAGTAAG--CTCTCTCTCCCTG-TGCTGTTGTTCAGACAAAGCAAGTGCCATATATAATTACTCTACTTACTTA
CTCATCATCTCATGATTTCCTTTTTTACTGCCATGAATGTATTTCTCTTATTTGTGT-------------GTTTTTCCTT
CTCTGGCTCTGAATTGTGATGTGCTCCGCTAAAGTGCCTTTTACTGCCATGAATAATGTCTTATTTCTGCTACCTTGGAG
CAGCTTCTTTTCTTCTGTCTTTGAATTGTGATGTGCTCTGGTAAATAATCCCACTAGTTACTATCTTGCTCTGCATGCCT
GGCTTAAACTAGTTTCACATTTTCATTTCATTTCAAAAAAAAAAAAAAACTAGATTCACATTT--CACAGCTACTGCACA
GTACATTCATGCGATGCCAATCAATGCATGCACAATGTTCAG-AAAATCCTCATGATATTCCACCCGCAAGGTAGAGTGG
GGAGGGAATAACCAGAGAGTGATAGCAGCCGGTCTTTTGTGACTGGAATATATTGAGAATGGAATAAAAACAACTGGCCC
AGATCTTTCTTTTTTTTCATTCGCCAGTTTTGA-TATATTTCTCATAATTTTTCTCAGTACACAGCACCAATAGGTGGAC
GGTTGTGCATGCACACAGAAAGAGATTCTCCAATTTACCCTCTATGCTCCCCCTCCACTATTGATTCCTGAGAATTCTGA
TTGTACCACAGGGGCACTTTTTCCTG
>chr6B_1
CCGGCTTTCGGCGCATCTTCCCGTGGGCCGTGGCAGAGAGAGAGA----GACGCCGGCGC----GGGCCGGCTGGCAAGT
TGGAGAGTCTGGACACGACGGCCTC--CTCTAGACGCCTCCACCAGTCACCACACGGGGCCTACCGCCTACC--AGCTAC
AGCAGTGGCGCCGGGCCAAGTGAAGTGAACGCGCCTGCACCTGCGTAGTACGGCGGGCATGGGCGCGCGAGTGAGGCCAA
GTGAGGTCAGCGTGATTTCCAGCCGAGCTGCCTCAGCCTCGGATCCACTCCGACCGCCCGCACGTGCGACCGCCCCGCCC
-------------------------------TCATTCCTGCCCGCTCTGCGCCGCTGCTCTGCTGCACCGCTGCCGCTGC
AATCGATCGGGGGTCGATTCCCATTCCCACCCTCCCCCCAGCGGAATCGCATTCCCGTTCGTCCTCCCCCGAGCCACCGG
CCGGCTCTATAAATCCCTCCCCGCTCCCTGCCCCAACACCCCCCTCCTCCTCCTCC--CTCTCTTCTTCCTCCTG-----
------CCCTCCTCTGCACCGCAGCGAGAGAGAGAGACAGACAGAGTCCGTCTAGAGAGAGAGAGAGAGAGAGAGAGAGA
GAGAGAGAGAGAGAGAGCGAGGAAGGGAAGCAGGCAGTGAGCTG-----------AGAGGTCGGCCGTCCACCCGTCCAT
TTCCCGGCCGGTGGAGCTCC---CTCTT-CTTCCCGGAGGCAACCCAAGAAAGCGGAGCGCACATGCTTCCCCGGGTCCG
CCTCAGAGTCCCCCGATGTCGCCGGTGATCAGCGAGATCCTCCTCTCGGGGTTTATGATCAACTCCACACTCCGGCGCCG
AACCCACCTCGTCCAGTCCTTCTCCGTCGTCTTCCTCTACTGGTTCTATGTCTTCTCATAAACTACTCGCCCCCGCCGTC
GCCCTCCCCCTCCTCTCCCTCCTCCTCCTCCTCCTTTAGCCCTCCTGCTCATCCCTTCAAGCTCCCCTCGTCCCACACAC
TCGCTTACTCTCTCTCTCTCGTCGTCGTCGCAGTCTC----TCTAGAGTCAGTCCGTAGCTGGTTACGATCC--ATCTTT
GGTTCTTGCAACAACAACAAAGGAAAGCAGAGAGTGCTTGTCTGCTCGCTTGCTTG-GTGGTGATGGCGTCCTCC-----
-AGCGGGAGCGGGAGCACGGGCTCGCTGTCGACGGCGGGGGCGGCCATGGCGATGGCGGCCGCGTCGGGCACGGAGGAGG
AGATGCGGGCGCTCATGGAGCAGCGCCGGGCCAAGCGGATGCTCTCCAACCGGGAGTCGGCGCGCCGCTCGCGGATGCGC
AAGCAGCGCCACCTCGACGACCTCGCCGCGCAGGCGGCGCACCTCCGCCGCGAGAACGCGCACGTCGCCGCCGCGCTCGG
GCTCACCGCGCGGGGCCTCCAGGCCGTCGACGCCGAGAACGCCGTCCTCCGCACCCAGGCCGCCGAGCTCGCCGCGCGCC
TCCACTCGCTCAACGACATCATCGCCTGCATGAGCGCCAACAACAACACCGCCGCCGCCGTCACGCTCACCGTCGCCGCA
GCCGCCACCGCCACCACCGCCGACCCGCTCCTCGGCGGCTTCGACGGCGCGTCATTCGAGGACTTCCTCTTCAGATCCTC
CCCCGAGATGTTCATGTTCCCAGCCCTGCAAAGCTAGCACCCACGCCACGGCCATGGCAGCAGCACAAGCACGAGCGCGC
AACAAAAGAGATGATCCATCTTTTTTCCTGATGCTTCTGGTGTTTCAGGTTAATTACTACAGTACAAAAAACTGGGAGAG
CCGTGGAGTTTTTACCGCACCTAACTAAGCTAGCTGCTGGGGTTAATTAGTTTATAATTATCATGTGTAATCTGAACTGG
TGTGTGTACCAAGTGATGATGGTTCTTAAGCTTAGCATGCATGCATCACCATCATGTGATC---CCCCTATGTAAGAAGG
AAGAAGCAGTTAGCTCTCTCTCTCCCTG-TGCTGTTGCTCAGACAAAGCAAGTGCCATATATAATTACTCTACTTACTTA
CTCATCATCTCATGATTTCCTTTTTTACTGTCATGAATGTATTTCTCTTATTTCTGCTACTTTGGAGCAGGTTTTTCCTT
CTCTGACTCTGAATTGTGATGTGCTCTGCTAAAGTGCCTTTTACTGCCATGAAT---GTCTTATTTCTGCTACCTTGGAG
CAACTTTTTTTCTTCTGTCTTTGAACTGTGATGTGCTCTGGTAAATAATGCCACTAATTC---TCTTGCTC----TGCCT
GGCTTAAACTAGTTTCACATTTTCATTCC--------AAAAAAAAAAAACTAGCTTCACATTTTTCACAGCTACTG-ATA
GTACATTCCTCTGATGCCAATCAATCAATGCACAATGTTCAGAAAAATCCTCATGATATTCCTCCCACAAGGTAGAGTGG
GAAGGGAATAACCAGAGAGTGATAGCAGCCAGTCTTTTGTGACTGGAATATATTCACAACAGAATAAAAACAACTGGCCC
ATGTTTTTTTTTTCCTTCATTCACCAATTGATAGTACATTTCTCAGGATTTTTCAGTACGCGCAGCACCAACAGATGGAC
GGTTGTGCATGCACACAGAAAGAGATTCTCCGATTTACCCCCAACGTT-CCCCTCCACTAT-------------------
--------------------------
>chr6D_4
---GCTTTCGGCGCATCTTCTCGTGGC-----------AGAGAGGCGCCGGCGCCGGCGCGGGCCGGTAAGTTCGAGAG-
------GTTTCGCCACGGAGGCCTCCTCTCTAGACGCATCCGCCGGTCACCCCACGGGGCCTACCGGCTACCCGAGCTAC
AGCAGTGGCGCCGAGCCAAGTGAAGTGAACGCGCCTGCACATACGTACGGC----GGCATGGGCGC----GTGAGGCCAA
GTGAGGTCAGCGTGATTTCCAGCTGAGCTGCTTCAGCCTCGGATCCACTCCGACCGCCCGCACGTGCGACCGCCCTGCCC
GCCTGCGCTCCCCGCGCTCTCACTCAGCCATTCCTGCATGCCCGCTCTGCTGTGCT------CTGCACCGCTGCACTCAG
ATCG-----------GATTCCCATTCCCACCCTCCACCCA-CGGAATTGCATTCCCGTTCGTCCTCCCCTGAGCCACCGG
CCGGCTCTATAAATCCCTCCCCGCTCCCTGCCCCAACACCCCCCTCCTCCTCCTCCTCCACTCTTCTTCCTCCTCCTCCA
CTCCATCCCTCCCCTGCACCGCAGCGAG-------------CAGAGTCCGTCTAGAGAGAGAGAGAGAGAGAGAGAA---
---------------AGTGAGGAGGAGAAGCAAGCAGTACGAGAGCTAGGAAGAAAGAGGTCGGTCTCACTCATCCATTG
CCGCCTAGCTTGGTTGGTTGCTTCTCTT-CCCCCCGGAGGCAACCCAAGAAAGCGGAGCGCACATGCTTCCCCGGGTCCG
CCTCAGAGTCCCCCGATGTCGCCGGTGATCAGCGAGATCCTACTCTCCGGGTTTATGATCAACTCCACACTCCGGCGCCG
AACCCACCTCGTCCAGTCCTTCTCCGTCGTCTTCCTCTACTGGTTCTATGTCTTCTCATAAATTACTCGCCCCCGCCGCC
GCCCTCCCCCTCCTCTCCCTCCT---CCTCCTCCTTTAGCCCCCCTGCTCATCCCTTCAAGCTCCCCTCGTCCCACACAC
TCGCTTACTCTCTCG---TCGTCGTCGTCGTCGCCTC----TCTAGAGTCAGTCCGTAGCTGGTAATCAAGTCGATCTTT
GGTTCTTGCAACAACAACAAAGGAAAGCAGAGAGTGCTTGCCTGCTCGCTTGGTGGTGAGGTGATGGCGTCCTCCAGCGG
GAGCGGGAGCGGGAGCACGGGCTCGCTGTCGACGGCGG---CGGCCATGGCGATGGCGGCCGCGTCGGGCACGGAGGAGG
AGATGCGGGCGCTCATGGAGCAGCGCCGGGCCAAGCGGATGCTCTCCAACCGGGAGTCGGCGCGCCGCTCGCGGATGCGC
AAGCAGCGCCACCTCGACGACCTCGCCGCGCAGGCGGCGCACCTGCGCCGCGAGAACGCGCACGTCGCCGCCGCGCTCGG
GCTCACCGCGCGGGGCCTCCAGGCCGTCGACGCCGAGAACGCCGTCCTCCGCACCCAGGCCGCCGAGCTCGCCGCGCGCC
TCCACTCGCTCAACGACATCATCGCCTGCATGAGCGCCAGCAACAACACCGCCGCCGCCGTCGCGCTCACCGTCGCCGCA
GCAGCCACCGCCACCACCGCCGACCCGCTC------GGCTTCGACGGCGCGTCATTCGAGGACTTCCTCTTCAGATCCTC
CCCCGAGATGTTCATGTTCCCAGCCCTGCAAAGCTAGCACCCACGCCACGGCCATGGCAGCAGCACAAGAGCGA--GCGC
AACAAAAGAGATCATCCATCTTTTTTCCTGATGCTTCTGGTGTTTCAGGTTAATTACTAGTACTACAAAAACT-GGAGAG
CCGTGGAGTTTTTACCGCACCTAACTAAGCTAGCTGCTGGGGTTAATTAGTTTATAATTATCATGTGTAATCTGAACTGG
TGTGTTTACCAAGTGATGATGGTTCTTAAGCTTAGCATGCATCACC--------ATCATGTGATCCCCTATGTAAGAAGG
AAGAAGCAGTAAGCTCTCTCTGCCTGTGCTGTTGTTGTTCAGACAAAGCAAGTGCCATATATAATTACTCTACTTACTTA
CTCATCATCTCATGATTTCCTTTTTCACTGTCATGAATGTATTTCTCTTATTTCTGCTACTTTGGAGCAGGTTTTTCCTT
CTCCGACTCTGAATTGTGATGTGCTCTGCTAAAGTGCCTTTTACTGCCATGAAT---GTCTTATTTCTGCTACCTTGGAG
CAACTTTTTTTCTTCTGTCTTTCAATTGTGATGTGCTCTGGTAAATAATGCCACTAATTACTATCTTGCTC----TGCCT
GGCTTAAACTAGCTTCACATTCTCATTTC---------AAAAAAGAAAACTAGATTCACATTT--CACAGCTACTGCATA
GTACATTCATGTGATGCCAATCAATGCA----CAATGTTCTGG-AAATCCTCATGATATTCCACCCACAGGGTAGAGTGG
GAAGGGAATAACCAGAGAGTGATAGCAGCCAGTCTTTTGTGACTGGAATATATTGAGAATGGAATAAAAACAACTGGCCC
ATAGG--TTTTTTTCTTCATTCACCAATTTTGACAATATTTCTCAGAATTTT-CTCAGTACACAGCACCAACAGGTGGAC
GGTTGTGCATGCCCACAGAAAGAGATTCTCCAATTTACCCTCTATGTT-CCCCTCCACTATTGATTCCCGAGAATTCTGA
TTGTACCACA-GGGCACTTTTTCCTG
>chr7B_1792
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------------------------------------------------------------------------TAAGAAGG
AAGAAGCAGTAAGCTCTCTCTCCCTGTGCTGTTGTTCAG-AGACAAAGCAAGTGCCATATATAATTACTCTACTTACTTA
CTCATCATCTCATGATTTCCTTTTCTACTATCATGAATGTATTTCTCTCATTTTTGCTACTTTGGACCAGGTTTTTCCTT
CTCTGACTCTATATTGTCATGTTCTCTGCTAAAGTGCCTTTTACTGCCATGAAT---GTCTTATTTCTGCTACCTTGGAG
CAACTTTTTTTCTTCTGTCTTTGAATTGTGATGTGCTCTGGTAAATAATGCCACTAATTA---TCTTGCTC----TGCCT
GGCTTAAACTAGTTTCACATTTTCATTTCA------AAAAATAAAAAAACTAGATTCACATTT--CATAGCTACTGCATA
GTACATTCATGTGATGCCAATCAATGCA----CAATGCACAGAAAAATTCTCATGATATTCCTCCCACAAGGTATAGTGG
GAAGGGAATAACCAGAGAGTGATAGCAGCCAGTCTTTTGTCCCTGGAATATATTCATAACAGAATCAAAAC---------
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>chr2B_1792
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------------------------------------------------------------------------TAAGAAGG
AAGAAGCAGTAAGCTCTCTCTCCCTATGCTGTTGTTCAG-AGACAAAGCAAGTTCCATATATAATTACTCTACTTACTTA
CTCATCATCTCATGATTTCCTTTTCTACTGTCATGAATGTATTTCTCTCATTTCTGCTACTTTGGAGCAGGTTTTTCCTT
CTCTGACTCTGAATTGTCATGTGCTCTGCTAAAGTGCCTTTTACTGCCATGAAT---GTCTTATTTCTGCTACCTTGGAG
CAACTTTTTTTCTTATGTCTTTGAATTGTGATGTGCTCTGGTAAATAATGCCACTAATTA---TCTTGCTC----TGCCT
GGCTTAAACTAGTTTCACATTTTCATTTCA------AAAAAT-AAAAAACTAGATTCACATTT--CATAGCTACTGCATA
GTGCATTCATGTGATGCCAATCAATGCA----CAATGCACAGAAAAATTCTCATGATATTTCTCCCACAAGGTAGAGTGG
GAAGGGAATAACCAGAGAGTGATAGCAGCTAGTCTTTTGTGCCTGGAATATATTCATAACAGAATAAAA-----------
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>SNPs
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-------------------------------------S-----------S------------------------------
--------------------------------S-----------------------------------------------
------------------------------S-------------------------S----------------S--S---
--SSS--S--------------------------------------------------S-SS------------------
------------------------------------------------S---------------S-S-------------
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-----S------------------------------------------S----------S--SSSSS--SSS--------
-----------------------------------------------------------------S--------------
----------------------------S---------------------------------------------------
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--------------------------------------------------------------------------SSS---
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--------------------------------S-SSSSSSS---------------------------------------
------------------------------S--------------SS-----------S--S------------------
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S-------------------------------------------------------------------------------
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------------------S-------SS-------------------------SS----S----S---------------
-----------------------------------------------------S--------------------------
-S--------------S--------S------------------------------SS-------S-S-----S------
-S-------------------S----------------------------------------------------------
-----------------------------------------------------S--------------------------
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------------------------------S----------------------S--S-----------------------
-----S--------------------S---------------------------SSS-----------------------
--S---S------------------------------------------S------S--------------SSSS-----
------------------------------SSSSSS------------------------------------------S-
-----------S------------------------------------------------------S-------------
-S----------------------------S-------------------------------------------------
-S--S---S-----S-------S---S------------------S-------------------------S--------
----------------------------------------------S-S-------------------S-----------
----------S---------------
>forward_566
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------------------------------------------------------------------TTCCTCCTCCTCCA
CTCCAG--------------------------------------------------------------------------
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>reverse_1665
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----------------------------------------------------------------ACCTCTTCAGATCCTC
CCCC----------------------------------------------------------------------------
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>forward_1081
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---------------------TCGTCGTCGCCTCTCTAGAG---------------------------------------
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>reverse_2632
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-----------------------------------------------------------------------TAGGTGGAC
GGTTGTGCATG---------------------------------------------------------------------
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