Multiple sequence alignment - TraesCS6A01G090100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G090100 chr6A 100.000 2610 0 0 1 2610 58018374 58020983 0.000000e+00 4820.0
1 TraesCS6A01G090100 chr6A 100.000 145 0 0 1 145 57962221 57962365 4.280000e-68 268.0
2 TraesCS6A01G090100 chr6B 93.657 1939 106 9 139 2066 93986778 93988710 0.000000e+00 2883.0
3 TraesCS6A01G090100 chr6B 83.740 369 46 8 2071 2428 234849021 234849386 1.160000e-88 337.0
4 TraesCS6A01G090100 chr6B 100.000 145 0 0 1 145 113652805 113652661 4.280000e-68 268.0
5 TraesCS6A01G090100 chr6B 100.000 145 0 0 1 145 559344700 559344556 4.280000e-68 268.0
6 TraesCS6A01G090100 chr6B 100.000 145 0 0 1 145 578298168 578298312 4.280000e-68 268.0
7 TraesCS6A01G090100 chrUn 91.054 1196 73 13 887 2066 18806617 18805440 0.000000e+00 1585.0
8 TraesCS6A01G090100 chrUn 95.739 352 11 1 395 742 18806968 18806617 4.880000e-157 564.0
9 TraesCS6A01G090100 chrUn 95.789 95 2 1 2516 2610 18805188 18805096 4.500000e-33 152.0
10 TraesCS6A01G090100 chrUn 93.000 100 5 2 182 280 18807078 18806980 7.530000e-31 145.0
11 TraesCS6A01G090100 chrUn 92.632 95 6 1 2426 2519 18805441 18805347 4.530000e-28 135.0
12 TraesCS6A01G090100 chrUn 97.727 44 1 0 139 182 18807104 18807061 2.790000e-10 76.8
13 TraesCS6A01G090100 chr3D 85.753 372 44 7 2060 2427 119655701 119656067 4.070000e-103 385.0
14 TraesCS6A01G090100 chr3D 85.753 372 44 5 2062 2426 513859688 513859319 4.070000e-103 385.0
15 TraesCS6A01G090100 chr1B 85.792 366 43 8 2064 2426 533813003 533813362 1.900000e-101 379.0
16 TraesCS6A01G090100 chr1B 100.000 145 0 0 1 145 30883567 30883423 4.280000e-68 268.0
17 TraesCS6A01G090100 chr5D 85.135 370 47 6 2064 2426 67871357 67871725 3.170000e-99 372.0
18 TraesCS6A01G090100 chr5D 84.375 384 51 8 2064 2443 484027805 484027427 4.100000e-98 368.0
19 TraesCS6A01G090100 chr3A 84.324 370 48 6 2064 2426 594851730 594851364 1.150000e-93 353.0
20 TraesCS6A01G090100 chr4D 82.415 381 46 10 2063 2426 285748102 285748478 1.950000e-81 313.0
21 TraesCS6A01G090100 chr2A 82.235 349 50 10 2086 2426 663632924 663632580 9.140000e-75 291.0
22 TraesCS6A01G090100 chr7D 100.000 145 0 0 1 145 263321726 263321582 4.280000e-68 268.0
23 TraesCS6A01G090100 chr4A 100.000 145 0 0 1 145 339995926 339995782 4.280000e-68 268.0
24 TraesCS6A01G090100 chr2D 100.000 145 0 0 1 145 595126972 595127116 4.280000e-68 268.0
25 TraesCS6A01G090100 chr1A 100.000 145 0 0 1 145 252514142 252513998 4.280000e-68 268.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G090100 chr6A 58018374 58020983 2609 False 4820.000000 4820 100.0000 1 2610 1 chr6A.!!$F2 2609
1 TraesCS6A01G090100 chr6B 93986778 93988710 1932 False 2883.000000 2883 93.6570 139 2066 1 chr6B.!!$F1 1927
2 TraesCS6A01G090100 chrUn 18805096 18807104 2008 True 442.966667 1585 94.3235 139 2610 6 chrUn.!!$R1 2471

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
132 133 0.034089 GCCAAGCCTATCACAACCCT 60.034 55.0 0.0 0.0 0.0 4.34 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2126 2151 0.03582 AGATTTCTTACCGCGGCCAA 60.036 50.0 28.58 18.89 0.0 4.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 1.963679 CATTTTCCACCACACCCGG 59.036 57.895 0.00 0.00 0.00 5.73
19 20 1.228737 ATTTTCCACCACACCCGGG 60.229 57.895 22.25 22.25 0.00 5.73
20 21 2.014033 ATTTTCCACCACACCCGGGT 62.014 55.000 24.16 24.16 39.88 5.28
21 22 2.226149 TTTTCCACCACACCCGGGTT 62.226 55.000 27.83 13.37 36.19 4.11
22 23 2.627839 TTTCCACCACACCCGGGTTC 62.628 60.000 27.83 0.00 36.19 3.62
23 24 4.653888 CCACCACACCCGGGTTCC 62.654 72.222 27.83 0.00 36.19 3.62
34 35 2.960129 GGGTTCCGATGTAGCGCG 60.960 66.667 0.00 0.00 0.00 6.86
35 36 2.202703 GGTTCCGATGTAGCGCGT 60.203 61.111 8.43 0.00 0.00 6.01
36 37 2.228914 GGTTCCGATGTAGCGCGTC 61.229 63.158 8.43 0.00 0.00 5.19
48 49 4.421479 CGCGTCGCTGAGAGGGTT 62.421 66.667 16.36 0.00 35.42 4.11
49 50 2.882876 GCGTCGCTGAGAGGGTTA 59.117 61.111 10.68 0.00 35.42 2.85
50 51 1.516603 GCGTCGCTGAGAGGGTTAC 60.517 63.158 10.68 0.00 35.42 2.50
51 52 1.226323 CGTCGCTGAGAGGGTTACG 60.226 63.158 0.00 0.00 0.00 3.18
52 53 1.516603 GTCGCTGAGAGGGTTACGC 60.517 63.158 0.00 0.00 0.00 4.42
53 54 2.202756 CGCTGAGAGGGTTACGCC 60.203 66.667 0.00 0.00 0.00 5.68
62 63 4.061949 GGTTACGCCCCAACGAAA 57.938 55.556 0.00 0.00 36.70 3.46
63 64 2.329244 GGTTACGCCCCAACGAAAA 58.671 52.632 0.00 0.00 36.70 2.29
64 65 0.883153 GGTTACGCCCCAACGAAAAT 59.117 50.000 0.00 0.00 36.70 1.82
65 66 1.135603 GGTTACGCCCCAACGAAAATC 60.136 52.381 0.00 0.00 36.70 2.17
66 67 1.808343 GTTACGCCCCAACGAAAATCT 59.192 47.619 0.00 0.00 36.70 2.40
67 68 2.188062 TACGCCCCAACGAAAATCTT 57.812 45.000 0.00 0.00 36.70 2.40
68 69 1.324383 ACGCCCCAACGAAAATCTTT 58.676 45.000 0.00 0.00 36.70 2.52
69 70 1.684450 ACGCCCCAACGAAAATCTTTT 59.316 42.857 0.00 0.00 36.70 2.27
70 71 2.058057 CGCCCCAACGAAAATCTTTTG 58.942 47.619 0.00 0.00 34.06 2.44
71 72 2.412870 GCCCCAACGAAAATCTTTTGG 58.587 47.619 0.00 0.00 38.62 3.28
76 77 5.651172 CCAACGAAAATCTTTTGGGTTTC 57.349 39.130 0.00 0.00 35.76 2.78
77 78 5.112686 CCAACGAAAATCTTTTGGGTTTCA 58.887 37.500 0.00 0.00 35.76 2.69
78 79 5.757808 CCAACGAAAATCTTTTGGGTTTCAT 59.242 36.000 0.00 0.00 35.76 2.57
79 80 6.073819 CCAACGAAAATCTTTTGGGTTTCATC 60.074 38.462 0.00 0.00 35.76 2.92
80 81 6.405278 ACGAAAATCTTTTGGGTTTCATCT 57.595 33.333 0.00 0.00 31.27 2.90
81 82 6.447162 ACGAAAATCTTTTGGGTTTCATCTC 58.553 36.000 0.00 0.00 31.27 2.75
82 83 5.863935 CGAAAATCTTTTGGGTTTCATCTCC 59.136 40.000 0.00 0.00 31.66 3.71
83 84 6.516527 CGAAAATCTTTTGGGTTTCATCTCCA 60.517 38.462 0.00 0.00 31.66 3.86
84 85 6.940430 AAATCTTTTGGGTTTCATCTCCAT 57.060 33.333 0.00 0.00 0.00 3.41
85 86 8.434589 AAAATCTTTTGGGTTTCATCTCCATA 57.565 30.769 0.00 0.00 0.00 2.74
86 87 8.434589 AAATCTTTTGGGTTTCATCTCCATAA 57.565 30.769 0.00 0.00 0.00 1.90
87 88 7.651027 ATCTTTTGGGTTTCATCTCCATAAG 57.349 36.000 0.00 0.00 39.39 1.73
88 89 6.789268 TCTTTTGGGTTTCATCTCCATAAGA 58.211 36.000 9.33 9.33 42.22 2.10
89 90 6.886459 TCTTTTGGGTTTCATCTCCATAAGAG 59.114 38.462 9.33 0.00 40.80 2.85
90 91 5.779241 TTGGGTTTCATCTCCATAAGAGT 57.221 39.130 0.00 0.00 43.71 3.24
91 92 5.102953 TGGGTTTCATCTCCATAAGAGTG 57.897 43.478 0.00 0.00 43.71 3.51
92 93 4.080356 TGGGTTTCATCTCCATAAGAGTGG 60.080 45.833 0.00 0.00 43.71 4.00
93 94 3.879892 GGTTTCATCTCCATAAGAGTGGC 59.120 47.826 0.00 0.00 43.71 5.01
94 95 4.384647 GGTTTCATCTCCATAAGAGTGGCT 60.385 45.833 0.00 0.00 43.71 4.75
95 96 4.412796 TTCATCTCCATAAGAGTGGCTG 57.587 45.455 0.00 0.00 43.71 4.85
96 97 3.646534 TCATCTCCATAAGAGTGGCTGA 58.353 45.455 0.00 0.00 43.71 4.26
97 98 3.640498 TCATCTCCATAAGAGTGGCTGAG 59.360 47.826 0.00 0.00 43.71 3.35
98 99 3.107402 TCTCCATAAGAGTGGCTGAGT 57.893 47.619 0.00 0.00 43.71 3.41
99 100 3.445008 TCTCCATAAGAGTGGCTGAGTT 58.555 45.455 0.00 0.00 43.71 3.01
100 101 3.840666 TCTCCATAAGAGTGGCTGAGTTT 59.159 43.478 0.00 0.00 43.71 2.66
101 102 4.287067 TCTCCATAAGAGTGGCTGAGTTTT 59.713 41.667 0.00 0.00 43.71 2.43
102 103 4.985538 TCCATAAGAGTGGCTGAGTTTTT 58.014 39.130 0.00 0.00 39.19 1.94
103 104 6.013725 TCTCCATAAGAGTGGCTGAGTTTTTA 60.014 38.462 0.00 0.00 43.71 1.52
104 105 5.938125 TCCATAAGAGTGGCTGAGTTTTTAC 59.062 40.000 0.00 0.00 39.19 2.01
105 106 5.163854 CCATAAGAGTGGCTGAGTTTTTACG 60.164 44.000 0.00 0.00 31.43 3.18
106 107 3.470645 AGAGTGGCTGAGTTTTTACGT 57.529 42.857 0.00 0.00 0.00 3.57
107 108 3.805207 AGAGTGGCTGAGTTTTTACGTT 58.195 40.909 0.00 0.00 0.00 3.99
108 109 3.560068 AGAGTGGCTGAGTTTTTACGTTG 59.440 43.478 0.00 0.00 0.00 4.10
109 110 2.616842 AGTGGCTGAGTTTTTACGTTGG 59.383 45.455 0.00 0.00 0.00 3.77
110 111 1.335496 TGGCTGAGTTTTTACGTTGGC 59.665 47.619 0.00 0.00 0.00 4.52
111 112 1.607148 GGCTGAGTTTTTACGTTGGCT 59.393 47.619 0.00 0.00 0.00 4.75
112 113 2.350484 GGCTGAGTTTTTACGTTGGCTC 60.350 50.000 0.00 0.00 0.00 4.70
113 114 2.661979 GCTGAGTTTTTACGTTGGCTCG 60.662 50.000 0.00 1.70 0.00 5.03
114 115 1.262151 TGAGTTTTTACGTTGGCTCGC 59.738 47.619 0.00 0.00 0.00 5.03
115 116 0.589708 AGTTTTTACGTTGGCTCGCC 59.410 50.000 0.00 0.00 0.00 5.54
116 117 0.308376 GTTTTTACGTTGGCTCGCCA 59.692 50.000 6.52 6.52 45.63 5.69
126 127 3.724494 GCTCGCCAAGCCTATCAC 58.276 61.111 0.00 0.00 45.92 3.06
127 128 1.153369 GCTCGCCAAGCCTATCACA 60.153 57.895 0.00 0.00 45.92 3.58
128 129 0.744414 GCTCGCCAAGCCTATCACAA 60.744 55.000 0.00 0.00 45.92 3.33
129 130 1.009829 CTCGCCAAGCCTATCACAAC 58.990 55.000 0.00 0.00 0.00 3.32
130 131 0.392461 TCGCCAAGCCTATCACAACC 60.392 55.000 0.00 0.00 0.00 3.77
131 132 1.376609 CGCCAAGCCTATCACAACCC 61.377 60.000 0.00 0.00 0.00 4.11
132 133 0.034089 GCCAAGCCTATCACAACCCT 60.034 55.000 0.00 0.00 0.00 4.34
133 134 2.019156 GCCAAGCCTATCACAACCCTC 61.019 57.143 0.00 0.00 0.00 4.30
134 135 1.408822 CCAAGCCTATCACAACCCTCC 60.409 57.143 0.00 0.00 0.00 4.30
135 136 1.561542 CAAGCCTATCACAACCCTCCT 59.438 52.381 0.00 0.00 0.00 3.69
136 137 1.501582 AGCCTATCACAACCCTCCTC 58.498 55.000 0.00 0.00 0.00 3.71
137 138 0.470341 GCCTATCACAACCCTCCTCC 59.530 60.000 0.00 0.00 0.00 4.30
141 142 4.037927 CCTATCACAACCCTCCTCCTTTA 58.962 47.826 0.00 0.00 0.00 1.85
193 194 8.788813 CGTTTATTTAGAGCTGCTGTTTATTTG 58.211 33.333 7.01 0.00 0.00 2.32
218 220 6.401153 GGAGCTAGTGTTTTGTTCAGTAATCG 60.401 42.308 0.00 0.00 0.00 3.34
231 233 1.479323 AGTAATCGTGCATACCACCGT 59.521 47.619 0.00 0.00 41.53 4.83
238 240 2.417239 CGTGCATACCACCGTGTATTTT 59.583 45.455 0.00 0.00 41.53 1.82
377 379 8.708378 TGGTCAGAATTCACATAGTTGATCTAT 58.292 33.333 8.44 0.00 39.67 1.98
461 463 7.483356 TGGTTTACCCGACGAAGTTATTGGT 62.483 44.000 0.00 0.00 36.22 3.67
607 613 4.471078 TGGATATAGGTGTAGCACTCCT 57.529 45.455 12.43 12.43 43.74 3.69
754 760 9.722056 CTTTATACCTGCTTTTATGCTTACAAG 57.278 33.333 2.04 2.04 0.00 3.16
783 789 9.664332 ATGATATAGTATGAATTTGAGGCTGTC 57.336 33.333 0.00 0.00 0.00 3.51
785 791 4.471904 AGTATGAATTTGAGGCTGTCGA 57.528 40.909 0.00 0.00 0.00 4.20
811 817 2.684881 CACAAGAGAAACTGTGTTGGCT 59.315 45.455 0.00 0.00 0.00 4.75
815 821 4.639135 AGAGAAACTGTGTTGGCTTTTC 57.361 40.909 0.00 0.00 0.00 2.29
826 832 8.082242 ACTGTGTTGGCTTTTCTGAATAAATAC 58.918 33.333 0.00 0.00 0.00 1.89
834 840 8.730680 GGCTTTTCTGAATAAATACTGACTTGA 58.269 33.333 0.00 0.00 0.00 3.02
875 881 2.014128 GCGGCACTTAAGGCAGAATTA 58.986 47.619 16.14 0.00 0.00 1.40
884 890 3.933861 AAGGCAGAATTAGTACCTGGG 57.066 47.619 0.00 0.00 0.00 4.45
890 896 5.163237 GGCAGAATTAGTACCTGGGATGTTA 60.163 44.000 0.00 0.00 0.00 2.41
893 899 7.509546 CAGAATTAGTACCTGGGATGTTACAT 58.490 38.462 0.00 0.00 0.00 2.29
1016 1022 0.254178 AGAATGGCAGGACAATCGCT 59.746 50.000 0.00 0.00 0.00 4.93
1024 1030 3.487544 GGCAGGACAATCGCTAAATCAAC 60.488 47.826 0.00 0.00 0.00 3.18
1110 1116 4.499040 GCAATGTGCGTTATTATGTTCACC 59.501 41.667 0.00 0.00 31.71 4.02
1111 1117 4.530094 ATGTGCGTTATTATGTTCACCG 57.470 40.909 0.00 0.00 0.00 4.94
1138 1144 7.406799 AAATTTAATTTGACCTCGTGCTTTG 57.593 32.000 1.76 0.00 0.00 2.77
1139 1145 5.508200 TTTAATTTGACCTCGTGCTTTGT 57.492 34.783 0.00 0.00 0.00 2.83
1225 1231 9.800433 TTATGGAATGCACAAATAACTGTAATG 57.200 29.630 0.00 0.00 0.00 1.90
1365 1371 3.102515 CGACTTTGTGATCGTCGGT 57.897 52.632 10.99 0.00 44.75 4.69
1404 1410 1.157870 CCATCGGCGCGGTTCTATTT 61.158 55.000 15.06 0.00 0.00 1.40
1440 1446 0.930726 CTCCCCTGTCCTCTCCTACT 59.069 60.000 0.00 0.00 0.00 2.57
1445 1453 2.422803 CCCTGTCCTCTCCTACTCTCTG 60.423 59.091 0.00 0.00 0.00 3.35
1446 1454 2.297701 CTGTCCTCTCCTACTCTCTGC 58.702 57.143 0.00 0.00 0.00 4.26
1453 1461 0.114364 TCCTACTCTCTGCCCACACA 59.886 55.000 0.00 0.00 0.00 3.72
1457 1465 1.373497 CTCTCTGCCCACACACGAC 60.373 63.158 0.00 0.00 0.00 4.34
1462 1470 2.047560 GCCCACACACGACCTACC 60.048 66.667 0.00 0.00 0.00 3.18
1471 1479 0.966920 CACGACCTACCCTCTGTTGT 59.033 55.000 0.00 0.00 0.00 3.32
1473 1481 1.254026 CGACCTACCCTCTGTTGTGA 58.746 55.000 0.00 0.00 0.00 3.58
1477 1485 1.202582 CCTACCCTCTGTTGTGACGAG 59.797 57.143 0.00 0.00 0.00 4.18
1487 1495 2.736721 TGTTGTGACGAGCAATCTTAGC 59.263 45.455 0.00 0.00 0.00 3.09
1488 1496 2.736721 GTTGTGACGAGCAATCTTAGCA 59.263 45.455 0.00 0.00 0.00 3.49
1494 1502 2.005451 CGAGCAATCTTAGCAAGCTGT 58.995 47.619 4.53 0.00 35.36 4.40
1507 1515 0.239347 AAGCTGTGATTTCTGCACGC 59.761 50.000 0.00 0.00 39.07 5.34
1566 1574 2.675583 ACAGCAGATGCAGGAGATAGA 58.324 47.619 7.68 0.00 45.16 1.98
1572 1580 3.129113 CAGATGCAGGAGATAGAGATCCG 59.871 52.174 0.00 0.00 40.73 4.18
1613 1621 2.875094 AGACAAGAGCAAATGAGCCT 57.125 45.000 0.00 0.00 34.23 4.58
1614 1622 3.151912 AGACAAGAGCAAATGAGCCTT 57.848 42.857 0.00 0.00 34.23 4.35
1665 1679 0.391130 TGATTAAACAGAGCGCGCCT 60.391 50.000 30.33 21.72 0.00 5.52
1680 1694 3.179265 CCTCGCTGTACGCAACGG 61.179 66.667 9.69 0.00 43.23 4.44
1766 1785 1.144057 AGCGATACTTTGGAGCGGG 59.856 57.895 0.00 0.00 0.00 6.13
1896 1915 1.911454 TCATTGGTCTGGGATGGGAT 58.089 50.000 0.00 0.00 0.00 3.85
1898 1917 2.586838 TCATTGGTCTGGGATGGGATTT 59.413 45.455 0.00 0.00 0.00 2.17
1901 1920 0.756815 GGTCTGGGATGGGATTTGCC 60.757 60.000 0.00 0.00 0.00 4.52
1964 1988 1.069090 GTCTGCATCCGGCCGATAA 59.931 57.895 30.73 12.51 43.89 1.75
2066 2091 3.444388 GGGGTGGTTTGTGCGATTAATTA 59.556 43.478 0.00 0.00 0.00 1.40
2067 2092 4.082136 GGGGTGGTTTGTGCGATTAATTAA 60.082 41.667 0.00 0.00 0.00 1.40
2069 2094 5.927115 GGGTGGTTTGTGCGATTAATTAAAA 59.073 36.000 1.21 0.00 0.00 1.52
2070 2095 6.128769 GGGTGGTTTGTGCGATTAATTAAAAC 60.129 38.462 1.21 0.57 0.00 2.43
2071 2096 6.128769 GGTGGTTTGTGCGATTAATTAAAACC 60.129 38.462 14.66 14.66 43.36 3.27
2073 2098 7.155328 TGGTTTGTGCGATTAATTAAAACCAT 58.845 30.769 18.16 0.00 46.06 3.55
2075 2100 9.141400 GGTTTGTGCGATTAATTAAAACCATTA 57.859 29.630 15.89 1.97 42.85 1.90
2078 2103 8.401046 TGTGCGATTAATTAAAACCATTAAGC 57.599 30.769 1.21 0.00 31.23 3.09
2079 2104 8.247562 TGTGCGATTAATTAAAACCATTAAGCT 58.752 29.630 1.21 0.00 32.61 3.74
2080 2105 9.724839 GTGCGATTAATTAAAACCATTAAGCTA 57.275 29.630 1.21 0.00 32.61 3.32
2081 2106 9.724839 TGCGATTAATTAAAACCATTAAGCTAC 57.275 29.630 1.21 0.00 32.61 3.58
2082 2107 8.889000 GCGATTAATTAAAACCATTAAGCTACG 58.111 33.333 1.21 0.00 32.61 3.51
2083 2108 8.889000 CGATTAATTAAAACCATTAAGCTACGC 58.111 33.333 1.21 0.00 32.61 4.42
2084 2109 9.724839 GATTAATTAAAACCATTAAGCTACGCA 57.275 29.630 1.21 0.00 32.24 5.24
2086 2111 7.985634 AATTAAAACCATTAAGCTACGCATG 57.014 32.000 0.00 0.00 0.00 4.06
2087 2112 6.745159 TTAAAACCATTAAGCTACGCATGA 57.255 33.333 0.00 0.00 0.00 3.07
2088 2113 5.637006 AAAACCATTAAGCTACGCATGAA 57.363 34.783 0.00 0.00 0.00 2.57
2089 2114 4.882671 AACCATTAAGCTACGCATGAAG 57.117 40.909 0.00 0.00 0.00 3.02
2090 2115 2.614057 ACCATTAAGCTACGCATGAAGC 59.386 45.455 0.00 1.53 39.08 3.86
2099 2124 2.486966 GCATGAAGCGAGGCCAAC 59.513 61.111 5.01 0.00 0.00 3.77
2100 2125 3.056313 GCATGAAGCGAGGCCAACC 62.056 63.158 5.01 0.00 0.00 3.77
2101 2126 1.675310 CATGAAGCGAGGCCAACCA 60.675 57.895 5.01 0.00 39.06 3.67
2102 2127 1.377725 ATGAAGCGAGGCCAACCAG 60.378 57.895 5.01 0.00 39.06 4.00
2103 2128 3.435186 GAAGCGAGGCCAACCAGC 61.435 66.667 5.01 2.26 40.78 4.85
2105 2130 3.003173 AGCGAGGCCAACCAGCTA 61.003 61.111 5.01 0.00 46.25 3.32
2106 2131 2.190578 GCGAGGCCAACCAGCTAT 59.809 61.111 5.01 0.00 38.41 2.97
2107 2132 2.182842 GCGAGGCCAACCAGCTATG 61.183 63.158 5.01 0.00 38.41 2.23
2108 2133 2.182842 CGAGGCCAACCAGCTATGC 61.183 63.158 5.01 0.00 39.06 3.14
2109 2134 1.825622 GAGGCCAACCAGCTATGCC 60.826 63.158 5.01 0.00 42.48 4.40
2110 2135 2.044053 GGCCAACCAGCTATGCCA 60.044 61.111 0.00 0.00 41.76 4.92
2111 2136 2.418083 GGCCAACCAGCTATGCCAC 61.418 63.158 0.00 0.00 41.76 5.01
2112 2137 1.678635 GCCAACCAGCTATGCCACA 60.679 57.895 0.00 0.00 0.00 4.17
2113 2138 1.039233 GCCAACCAGCTATGCCACAT 61.039 55.000 0.00 0.00 0.00 3.21
2114 2139 0.742505 CCAACCAGCTATGCCACATG 59.257 55.000 0.00 0.00 0.00 3.21
2115 2140 0.742505 CAACCAGCTATGCCACATGG 59.257 55.000 0.00 0.00 37.07 3.66
2125 2150 2.259204 CCACATGGCGCAAGTTGG 59.741 61.111 10.83 4.65 41.68 3.77
2126 2151 2.563798 CCACATGGCGCAAGTTGGT 61.564 57.895 10.83 0.00 41.68 3.67
2127 2152 1.363443 CACATGGCGCAAGTTGGTT 59.637 52.632 10.83 0.00 41.68 3.67
2128 2153 0.940519 CACATGGCGCAAGTTGGTTG 60.941 55.000 10.83 0.00 39.41 3.77
2129 2154 1.373246 CATGGCGCAAGTTGGTTGG 60.373 57.895 10.83 0.00 36.56 3.77
2130 2155 3.225069 ATGGCGCAAGTTGGTTGGC 62.225 57.895 10.83 0.00 36.56 4.52
2131 2156 4.662961 GGCGCAAGTTGGTTGGCC 62.663 66.667 10.83 0.00 42.01 5.36
2132 2157 4.999939 GCGCAAGTTGGTTGGCCG 63.000 66.667 0.30 0.00 36.56 6.13
2133 2158 4.999939 CGCAAGTTGGTTGGCCGC 63.000 66.667 4.75 0.00 36.56 6.53
2134 2159 4.999939 GCAAGTTGGTTGGCCGCG 63.000 66.667 4.75 0.00 36.56 6.46
2135 2160 4.341502 CAAGTTGGTTGGCCGCGG 62.342 66.667 24.05 24.05 37.67 6.46
2136 2161 4.887190 AAGTTGGTTGGCCGCGGT 62.887 61.111 28.70 0.00 37.67 5.68
2137 2162 3.479127 AAGTTGGTTGGCCGCGGTA 62.479 57.895 28.70 14.00 37.67 4.02
2138 2163 2.962142 AAGTTGGTTGGCCGCGGTAA 62.962 55.000 28.70 19.43 37.67 2.85
2139 2164 2.670251 TTGGTTGGCCGCGGTAAG 60.670 61.111 28.70 0.27 37.67 2.34
2140 2165 3.179888 TTGGTTGGCCGCGGTAAGA 62.180 57.895 28.70 7.83 37.67 2.10
2141 2166 2.358984 GGTTGGCCGCGGTAAGAA 60.359 61.111 28.70 11.46 0.00 2.52
2142 2167 1.967494 GGTTGGCCGCGGTAAGAAA 60.967 57.895 28.70 11.29 0.00 2.52
2143 2168 1.310216 GGTTGGCCGCGGTAAGAAAT 61.310 55.000 28.70 0.00 0.00 2.17
2144 2169 0.098200 GTTGGCCGCGGTAAGAAATC 59.902 55.000 28.70 6.82 0.00 2.17
2145 2170 0.035820 TTGGCCGCGGTAAGAAATCT 60.036 50.000 28.70 0.00 0.00 2.40
2146 2171 0.035820 TGGCCGCGGTAAGAAATCTT 60.036 50.000 28.70 0.77 39.85 2.40
2147 2172 1.092348 GGCCGCGGTAAGAAATCTTT 58.908 50.000 28.70 0.00 37.40 2.52
2148 2173 1.471287 GGCCGCGGTAAGAAATCTTTT 59.529 47.619 28.70 0.00 37.40 2.27
2149 2174 2.679336 GGCCGCGGTAAGAAATCTTTTA 59.321 45.455 28.70 0.00 37.40 1.52
2150 2175 3.242641 GGCCGCGGTAAGAAATCTTTTAG 60.243 47.826 28.70 0.00 37.40 1.85
2151 2176 3.619929 GCCGCGGTAAGAAATCTTTTAGA 59.380 43.478 28.70 0.00 37.40 2.10
2152 2177 4.093850 GCCGCGGTAAGAAATCTTTTAGAA 59.906 41.667 28.70 0.00 37.40 2.10
2153 2178 5.391203 GCCGCGGTAAGAAATCTTTTAGAAA 60.391 40.000 28.70 0.00 37.40 2.52
2154 2179 6.677187 GCCGCGGTAAGAAATCTTTTAGAAAT 60.677 38.462 28.70 0.00 37.40 2.17
2155 2180 7.248437 CCGCGGTAAGAAATCTTTTAGAAATT 58.752 34.615 19.50 0.00 37.40 1.82
2156 2181 7.753580 CCGCGGTAAGAAATCTTTTAGAAATTT 59.246 33.333 19.50 0.00 37.40 1.82
2157 2182 9.124807 CGCGGTAAGAAATCTTTTAGAAATTTT 57.875 29.630 0.00 0.00 37.40 1.82
2214 2239 4.569719 TTTTTAGATGGAGGTGAGGACC 57.430 45.455 0.00 0.00 43.52 4.46
2250 2275 7.948034 TTAAATGGAGGGTTATGTAAAGTGG 57.052 36.000 0.00 0.00 0.00 4.00
2251 2276 3.359695 TGGAGGGTTATGTAAAGTGGC 57.640 47.619 0.00 0.00 0.00 5.01
2252 2277 2.645297 TGGAGGGTTATGTAAAGTGGCA 59.355 45.455 0.00 0.00 0.00 4.92
2253 2278 3.014623 GGAGGGTTATGTAAAGTGGCAC 58.985 50.000 10.29 10.29 0.00 5.01
2254 2279 3.308188 GGAGGGTTATGTAAAGTGGCACT 60.308 47.826 15.88 15.88 0.00 4.40
2255 2280 3.939592 GAGGGTTATGTAAAGTGGCACTC 59.060 47.826 22.31 9.33 0.00 3.51
2256 2281 2.676342 GGGTTATGTAAAGTGGCACTCG 59.324 50.000 22.31 0.00 0.00 4.18
2257 2282 2.095372 GGTTATGTAAAGTGGCACTCGC 59.905 50.000 22.31 14.04 37.44 5.03
2258 2283 3.000727 GTTATGTAAAGTGGCACTCGCT 58.999 45.455 22.31 11.10 38.60 4.93
2259 2284 1.442769 ATGTAAAGTGGCACTCGCTG 58.557 50.000 22.31 0.00 38.60 5.18
2260 2285 0.602638 TGTAAAGTGGCACTCGCTGG 60.603 55.000 22.31 0.00 38.60 4.85
2261 2286 0.602905 GTAAAGTGGCACTCGCTGGT 60.603 55.000 22.31 0.07 38.60 4.00
2262 2287 0.970640 TAAAGTGGCACTCGCTGGTA 59.029 50.000 22.31 4.05 38.60 3.25
2263 2288 0.320771 AAAGTGGCACTCGCTGGTAG 60.321 55.000 22.31 0.00 38.60 3.18
2264 2289 2.125512 GTGGCACTCGCTGGTAGG 60.126 66.667 11.13 0.00 38.60 3.18
2265 2290 4.082523 TGGCACTCGCTGGTAGGC 62.083 66.667 0.00 0.00 38.60 3.93
2266 2291 3.775654 GGCACTCGCTGGTAGGCT 61.776 66.667 0.00 0.00 38.60 4.58
2267 2292 2.510238 GCACTCGCTGGTAGGCTG 60.510 66.667 0.00 0.00 34.30 4.85
2268 2293 3.006756 GCACTCGCTGGTAGGCTGA 62.007 63.158 0.00 0.00 34.30 4.26
2269 2294 1.140589 CACTCGCTGGTAGGCTGAG 59.859 63.158 0.00 0.00 38.13 3.35
2270 2295 2.055042 ACTCGCTGGTAGGCTGAGG 61.055 63.158 0.00 0.00 37.27 3.86
2271 2296 2.037367 TCGCTGGTAGGCTGAGGT 59.963 61.111 0.00 0.00 0.00 3.85
2272 2297 2.185350 CGCTGGTAGGCTGAGGTG 59.815 66.667 0.00 0.00 0.00 4.00
2273 2298 2.586792 GCTGGTAGGCTGAGGTGG 59.413 66.667 0.00 0.00 0.00 4.61
2274 2299 2.294078 GCTGGTAGGCTGAGGTGGT 61.294 63.158 0.00 0.00 0.00 4.16
2275 2300 0.976073 GCTGGTAGGCTGAGGTGGTA 60.976 60.000 0.00 0.00 0.00 3.25
2276 2301 1.568504 CTGGTAGGCTGAGGTGGTAA 58.431 55.000 0.00 0.00 0.00 2.85
2277 2302 2.119495 CTGGTAGGCTGAGGTGGTAAT 58.881 52.381 0.00 0.00 0.00 1.89
2278 2303 2.505819 CTGGTAGGCTGAGGTGGTAATT 59.494 50.000 0.00 0.00 0.00 1.40
2279 2304 2.916934 TGGTAGGCTGAGGTGGTAATTT 59.083 45.455 0.00 0.00 0.00 1.82
2280 2305 3.332485 TGGTAGGCTGAGGTGGTAATTTT 59.668 43.478 0.00 0.00 0.00 1.82
2281 2306 4.202631 TGGTAGGCTGAGGTGGTAATTTTT 60.203 41.667 0.00 0.00 0.00 1.94
2347 2372 4.553330 TTTTTAGATGAAGGCGAGGACT 57.447 40.909 0.00 0.00 0.00 3.85
2348 2373 3.802948 TTTAGATGAAGGCGAGGACTC 57.197 47.619 0.00 0.00 0.00 3.36
2349 2374 2.738587 TAGATGAAGGCGAGGACTCT 57.261 50.000 0.00 0.00 0.00 3.24
2350 2375 1.110442 AGATGAAGGCGAGGACTCTG 58.890 55.000 0.00 0.00 0.00 3.35
2351 2376 0.820871 GATGAAGGCGAGGACTCTGT 59.179 55.000 0.00 0.00 0.00 3.41
2352 2377 0.534412 ATGAAGGCGAGGACTCTGTG 59.466 55.000 0.00 0.00 0.00 3.66
2353 2378 0.827925 TGAAGGCGAGGACTCTGTGT 60.828 55.000 0.00 0.00 0.00 3.72
2354 2379 0.109039 GAAGGCGAGGACTCTGTGTC 60.109 60.000 1.35 1.35 44.63 3.67
2355 2380 0.540830 AAGGCGAGGACTCTGTGTCT 60.541 55.000 9.44 0.00 44.74 3.41
2356 2381 0.540830 AGGCGAGGACTCTGTGTCTT 60.541 55.000 9.44 2.16 44.74 3.01
2357 2382 0.318762 GGCGAGGACTCTGTGTCTTT 59.681 55.000 9.44 0.00 44.74 2.52
2358 2383 1.270358 GGCGAGGACTCTGTGTCTTTT 60.270 52.381 9.44 0.00 44.74 2.27
2359 2384 2.484889 GCGAGGACTCTGTGTCTTTTT 58.515 47.619 9.44 0.00 44.74 1.94
2383 2408 8.635877 TTTTAAATGAAAACGTGCATACAACT 57.364 26.923 0.00 0.00 31.90 3.16
2384 2409 8.635877 TTTAAATGAAAACGTGCATACAACTT 57.364 26.923 0.00 0.00 0.00 2.66
2385 2410 8.635877 TTAAATGAAAACGTGCATACAACTTT 57.364 26.923 0.00 0.00 0.00 2.66
2386 2411 6.747659 AATGAAAACGTGCATACAACTTTC 57.252 33.333 0.00 0.00 0.00 2.62
2387 2412 5.493133 TGAAAACGTGCATACAACTTTCT 57.507 34.783 0.00 0.00 0.00 2.52
2388 2413 5.507077 TGAAAACGTGCATACAACTTTCTC 58.493 37.500 0.00 0.00 0.00 2.87
2389 2414 5.295787 TGAAAACGTGCATACAACTTTCTCT 59.704 36.000 0.00 0.00 0.00 3.10
2390 2415 5.751243 AAACGTGCATACAACTTTCTCTT 57.249 34.783 0.00 0.00 0.00 2.85
2391 2416 6.854496 AAACGTGCATACAACTTTCTCTTA 57.146 33.333 0.00 0.00 0.00 2.10
2392 2417 6.854496 AACGTGCATACAACTTTCTCTTAA 57.146 33.333 0.00 0.00 0.00 1.85
2393 2418 6.854496 ACGTGCATACAACTTTCTCTTAAA 57.146 33.333 0.00 0.00 0.00 1.52
2394 2419 6.656003 ACGTGCATACAACTTTCTCTTAAAC 58.344 36.000 0.00 0.00 0.00 2.01
2395 2420 5.783654 CGTGCATACAACTTTCTCTTAAACG 59.216 40.000 0.00 0.00 0.00 3.60
2396 2421 6.346279 CGTGCATACAACTTTCTCTTAAACGA 60.346 38.462 0.00 0.00 0.00 3.85
2397 2422 6.790825 GTGCATACAACTTTCTCTTAAACGAC 59.209 38.462 0.00 0.00 0.00 4.34
2398 2423 6.007677 GCATACAACTTTCTCTTAAACGACG 58.992 40.000 0.00 0.00 0.00 5.12
2399 2424 6.346359 GCATACAACTTTCTCTTAAACGACGT 60.346 38.462 0.00 0.00 0.00 4.34
2400 2425 5.632445 ACAACTTTCTCTTAAACGACGTC 57.368 39.130 5.18 5.18 0.00 4.34
2401 2426 5.104374 ACAACTTTCTCTTAAACGACGTCA 58.896 37.500 17.16 0.00 0.00 4.35
2402 2427 5.005107 ACAACTTTCTCTTAAACGACGTCAC 59.995 40.000 17.16 0.00 0.00 3.67
2403 2428 4.675510 ACTTTCTCTTAAACGACGTCACA 58.324 39.130 17.16 0.00 0.00 3.58
2404 2429 4.738740 ACTTTCTCTTAAACGACGTCACAG 59.261 41.667 17.16 1.48 0.00 3.66
2405 2430 3.278367 TCTCTTAAACGACGTCACAGG 57.722 47.619 17.16 1.08 0.00 4.00
2406 2431 2.880268 TCTCTTAAACGACGTCACAGGA 59.120 45.455 17.16 4.77 0.00 3.86
2407 2432 3.504906 TCTCTTAAACGACGTCACAGGAT 59.495 43.478 17.16 0.00 0.00 3.24
2408 2433 3.571571 TCTTAAACGACGTCACAGGATG 58.428 45.455 17.16 0.00 46.00 3.51
2409 2434 2.357327 TAAACGACGTCACAGGATGG 57.643 50.000 17.16 0.00 43.62 3.51
2410 2435 0.949105 AAACGACGTCACAGGATGGC 60.949 55.000 17.16 0.00 43.62 4.40
2417 2442 4.738998 CACAGGATGGCGCCCCAA 62.739 66.667 26.77 5.45 46.14 4.12
2418 2443 3.743017 ACAGGATGGCGCCCCAAT 61.743 61.111 26.77 11.41 46.14 3.16
2419 2444 2.908940 CAGGATGGCGCCCCAATC 60.909 66.667 26.77 20.07 46.14 2.67
2420 2445 3.419580 AGGATGGCGCCCCAATCA 61.420 61.111 26.77 3.54 46.14 2.57
2421 2446 3.219198 GGATGGCGCCCCAATCAC 61.219 66.667 26.77 10.52 46.14 3.06
2422 2447 2.124151 GATGGCGCCCCAATCACT 60.124 61.111 26.77 0.00 46.14 3.41
2423 2448 1.148273 GATGGCGCCCCAATCACTA 59.852 57.895 26.77 0.73 46.14 2.74
2424 2449 0.886490 GATGGCGCCCCAATCACTAG 60.886 60.000 26.77 0.00 46.14 2.57
2425 2450 1.635817 ATGGCGCCCCAATCACTAGT 61.636 55.000 26.77 0.00 46.14 2.57
2426 2451 1.077716 GGCGCCCCAATCACTAGTT 60.078 57.895 18.11 0.00 0.00 2.24
2427 2452 0.679960 GGCGCCCCAATCACTAGTTT 60.680 55.000 18.11 0.00 0.00 2.66
2428 2453 0.733150 GCGCCCCAATCACTAGTTTC 59.267 55.000 0.00 0.00 0.00 2.78
2429 2454 1.948611 GCGCCCCAATCACTAGTTTCA 60.949 52.381 0.00 0.00 0.00 2.69
2430 2455 2.643551 CGCCCCAATCACTAGTTTCAT 58.356 47.619 0.00 0.00 0.00 2.57
2431 2456 2.355756 CGCCCCAATCACTAGTTTCATG 59.644 50.000 0.00 0.00 0.00 3.07
2432 2457 3.356290 GCCCCAATCACTAGTTTCATGT 58.644 45.455 0.00 0.00 0.00 3.21
2433 2458 3.378427 GCCCCAATCACTAGTTTCATGTC 59.622 47.826 0.00 0.00 0.00 3.06
2434 2459 4.588899 CCCCAATCACTAGTTTCATGTCA 58.411 43.478 0.00 0.00 0.00 3.58
2448 2473 1.395954 CATGTCATGTTGTGCCGAGAG 59.604 52.381 4.53 0.00 0.00 3.20
2473 2498 1.705256 TGTCGGCAAGTAATCGTGAC 58.295 50.000 0.00 0.00 0.00 3.67
2531 2718 8.296713 TCAACTGCAAAGTATAAAACCATTCTC 58.703 33.333 0.00 0.00 0.00 2.87
2573 2760 4.288887 AGTTACCCTCTGTAAAAGGAAGGG 59.711 45.833 4.20 4.20 41.00 3.95
2579 2766 4.767409 CCTCTGTAAAAGGAAGGGGAAAAG 59.233 45.833 0.00 0.00 35.83 2.27
2580 2767 4.149598 TCTGTAAAAGGAAGGGGAAAAGC 58.850 43.478 0.00 0.00 0.00 3.51
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.531739 CCCGGGTGTGGTGGAAAATG 61.532 60.000 14.18 0.00 0.00 2.32
1 2 1.228737 CCCGGGTGTGGTGGAAAAT 60.229 57.895 14.18 0.00 0.00 1.82
2 3 2.196229 CCCGGGTGTGGTGGAAAA 59.804 61.111 14.18 0.00 0.00 2.29
3 4 2.627839 GAACCCGGGTGTGGTGGAAA 62.628 60.000 31.05 0.00 35.88 3.13
4 5 3.097830 AACCCGGGTGTGGTGGAA 61.098 61.111 31.05 0.00 35.88 3.53
5 6 3.562232 GAACCCGGGTGTGGTGGA 61.562 66.667 31.05 0.00 35.88 4.02
6 7 4.653888 GGAACCCGGGTGTGGTGG 62.654 72.222 31.05 0.00 35.88 4.61
17 18 2.960129 CGCGCTACATCGGAACCC 60.960 66.667 5.56 0.00 0.00 4.11
18 19 2.202703 ACGCGCTACATCGGAACC 60.203 61.111 5.73 0.00 0.00 3.62
19 20 2.565394 CGACGCGCTACATCGGAAC 61.565 63.158 5.73 0.00 28.28 3.62
20 21 2.277692 CGACGCGCTACATCGGAA 60.278 61.111 5.73 0.00 28.28 4.30
31 32 3.047718 TAACCCTCTCAGCGACGCG 62.048 63.158 15.18 3.53 0.00 6.01
32 33 1.516603 GTAACCCTCTCAGCGACGC 60.517 63.158 13.03 13.03 0.00 5.19
33 34 1.226323 CGTAACCCTCTCAGCGACG 60.226 63.158 0.00 0.00 0.00 5.12
34 35 1.516603 GCGTAACCCTCTCAGCGAC 60.517 63.158 0.00 0.00 0.00 5.19
35 36 2.707849 GGCGTAACCCTCTCAGCGA 61.708 63.158 0.00 0.00 0.00 4.93
36 37 2.202756 GGCGTAACCCTCTCAGCG 60.203 66.667 0.00 0.00 0.00 5.18
45 46 0.883153 ATTTTCGTTGGGGCGTAACC 59.117 50.000 0.00 0.00 37.93 2.85
46 47 1.808343 AGATTTTCGTTGGGGCGTAAC 59.192 47.619 0.00 0.00 0.00 2.50
47 48 2.188062 AGATTTTCGTTGGGGCGTAA 57.812 45.000 0.00 0.00 0.00 3.18
48 49 2.188062 AAGATTTTCGTTGGGGCGTA 57.812 45.000 0.00 0.00 0.00 4.42
49 50 1.324383 AAAGATTTTCGTTGGGGCGT 58.676 45.000 0.00 0.00 0.00 5.68
50 51 2.058057 CAAAAGATTTTCGTTGGGGCG 58.942 47.619 0.00 0.00 0.00 6.13
51 52 2.412870 CCAAAAGATTTTCGTTGGGGC 58.587 47.619 0.00 0.00 34.69 5.80
52 53 3.038788 CCCAAAAGATTTTCGTTGGGG 57.961 47.619 17.61 11.08 45.27 4.96
54 55 5.112686 TGAAACCCAAAAGATTTTCGTTGG 58.887 37.500 0.00 0.00 36.67 3.77
55 56 6.701400 AGATGAAACCCAAAAGATTTTCGTTG 59.299 34.615 0.00 0.00 31.76 4.10
56 57 6.816136 AGATGAAACCCAAAAGATTTTCGTT 58.184 32.000 0.00 0.00 31.76 3.85
57 58 6.405278 AGATGAAACCCAAAAGATTTTCGT 57.595 33.333 0.00 0.00 31.76 3.85
58 59 5.863935 GGAGATGAAACCCAAAAGATTTTCG 59.136 40.000 0.00 0.00 31.76 3.46
59 60 6.758254 TGGAGATGAAACCCAAAAGATTTTC 58.242 36.000 0.00 0.00 0.00 2.29
60 61 6.745794 TGGAGATGAAACCCAAAAGATTTT 57.254 33.333 0.00 0.00 0.00 1.82
61 62 6.940430 ATGGAGATGAAACCCAAAAGATTT 57.060 33.333 0.00 0.00 33.15 2.17
62 63 7.895429 TCTTATGGAGATGAAACCCAAAAGATT 59.105 33.333 0.00 0.00 33.15 2.40
63 64 7.413446 TCTTATGGAGATGAAACCCAAAAGAT 58.587 34.615 0.00 0.00 33.15 2.40
64 65 6.789268 TCTTATGGAGATGAAACCCAAAAGA 58.211 36.000 0.00 0.00 33.15 2.52
65 66 6.660949 ACTCTTATGGAGATGAAACCCAAAAG 59.339 38.462 4.83 0.00 44.45 2.27
66 67 6.434028 CACTCTTATGGAGATGAAACCCAAAA 59.566 38.462 4.83 0.00 44.45 2.44
67 68 5.945784 CACTCTTATGGAGATGAAACCCAAA 59.054 40.000 4.83 0.00 44.45 3.28
68 69 5.500234 CACTCTTATGGAGATGAAACCCAA 58.500 41.667 4.83 0.00 44.45 4.12
69 70 4.080356 CCACTCTTATGGAGATGAAACCCA 60.080 45.833 4.83 0.00 44.45 4.51
70 71 4.455606 CCACTCTTATGGAGATGAAACCC 58.544 47.826 4.83 0.00 44.45 4.11
71 72 3.879892 GCCACTCTTATGGAGATGAAACC 59.120 47.826 0.00 0.00 44.45 3.27
72 73 4.574013 CAGCCACTCTTATGGAGATGAAAC 59.426 45.833 0.00 0.00 44.45 2.78
73 74 4.471025 TCAGCCACTCTTATGGAGATGAAA 59.529 41.667 0.00 0.00 44.45 2.69
74 75 4.033009 TCAGCCACTCTTATGGAGATGAA 58.967 43.478 0.00 0.00 44.45 2.57
75 76 3.640498 CTCAGCCACTCTTATGGAGATGA 59.360 47.826 0.00 0.00 44.45 2.92
76 77 3.387374 ACTCAGCCACTCTTATGGAGATG 59.613 47.826 0.00 0.00 44.45 2.90
77 78 3.652055 ACTCAGCCACTCTTATGGAGAT 58.348 45.455 0.00 0.00 44.45 2.75
78 79 3.107402 ACTCAGCCACTCTTATGGAGA 57.893 47.619 0.00 0.00 44.45 3.71
79 80 3.902881 AACTCAGCCACTCTTATGGAG 57.097 47.619 0.00 0.00 43.02 3.86
80 81 4.640771 AAAACTCAGCCACTCTTATGGA 57.359 40.909 0.00 0.00 43.02 3.41
81 82 5.163854 CGTAAAAACTCAGCCACTCTTATGG 60.164 44.000 0.00 0.00 43.26 2.74
82 83 5.408604 ACGTAAAAACTCAGCCACTCTTATG 59.591 40.000 0.00 0.00 0.00 1.90
83 84 5.548406 ACGTAAAAACTCAGCCACTCTTAT 58.452 37.500 0.00 0.00 0.00 1.73
84 85 4.952460 ACGTAAAAACTCAGCCACTCTTA 58.048 39.130 0.00 0.00 0.00 2.10
85 86 3.805207 ACGTAAAAACTCAGCCACTCTT 58.195 40.909 0.00 0.00 0.00 2.85
86 87 3.470645 ACGTAAAAACTCAGCCACTCT 57.529 42.857 0.00 0.00 0.00 3.24
87 88 3.303791 CCAACGTAAAAACTCAGCCACTC 60.304 47.826 0.00 0.00 0.00 3.51
88 89 2.616842 CCAACGTAAAAACTCAGCCACT 59.383 45.455 0.00 0.00 0.00 4.00
89 90 2.857104 GCCAACGTAAAAACTCAGCCAC 60.857 50.000 0.00 0.00 0.00 5.01
90 91 1.335496 GCCAACGTAAAAACTCAGCCA 59.665 47.619 0.00 0.00 0.00 4.75
91 92 1.607148 AGCCAACGTAAAAACTCAGCC 59.393 47.619 0.00 0.00 0.00 4.85
92 93 2.661979 CGAGCCAACGTAAAAACTCAGC 60.662 50.000 0.00 0.00 0.00 4.26
93 94 2.661979 GCGAGCCAACGTAAAAACTCAG 60.662 50.000 0.00 0.00 35.59 3.35
94 95 1.262151 GCGAGCCAACGTAAAAACTCA 59.738 47.619 0.00 0.00 35.59 3.41
95 96 1.399343 GGCGAGCCAACGTAAAAACTC 60.399 52.381 9.58 0.00 35.81 3.01
96 97 0.589708 GGCGAGCCAACGTAAAAACT 59.410 50.000 9.58 0.00 35.81 2.66
97 98 0.308376 TGGCGAGCCAACGTAAAAAC 59.692 50.000 15.24 0.00 44.12 2.43
98 99 2.704108 TGGCGAGCCAACGTAAAAA 58.296 47.368 15.24 0.00 44.12 1.94
99 100 4.458666 TGGCGAGCCAACGTAAAA 57.541 50.000 15.24 0.00 44.12 1.52
110 111 1.009829 GTTGTGATAGGCTTGGCGAG 58.990 55.000 0.00 0.00 0.00 5.03
111 112 0.392461 GGTTGTGATAGGCTTGGCGA 60.392 55.000 0.00 0.00 0.00 5.54
112 113 1.376609 GGGTTGTGATAGGCTTGGCG 61.377 60.000 0.00 0.00 0.00 5.69
113 114 0.034089 AGGGTTGTGATAGGCTTGGC 60.034 55.000 0.00 0.00 0.00 4.52
114 115 1.408822 GGAGGGTTGTGATAGGCTTGG 60.409 57.143 0.00 0.00 0.00 3.61
115 116 1.561542 AGGAGGGTTGTGATAGGCTTG 59.438 52.381 0.00 0.00 0.00 4.01
116 117 1.840635 GAGGAGGGTTGTGATAGGCTT 59.159 52.381 0.00 0.00 0.00 4.35
117 118 1.501582 GAGGAGGGTTGTGATAGGCT 58.498 55.000 0.00 0.00 0.00 4.58
118 119 0.470341 GGAGGAGGGTTGTGATAGGC 59.530 60.000 0.00 0.00 0.00 3.93
119 120 2.182516 AGGAGGAGGGTTGTGATAGG 57.817 55.000 0.00 0.00 0.00 2.57
120 121 4.141688 GGTAAAGGAGGAGGGTTGTGATAG 60.142 50.000 0.00 0.00 0.00 2.08
121 122 3.778629 GGTAAAGGAGGAGGGTTGTGATA 59.221 47.826 0.00 0.00 0.00 2.15
122 123 2.576648 GGTAAAGGAGGAGGGTTGTGAT 59.423 50.000 0.00 0.00 0.00 3.06
123 124 1.982958 GGTAAAGGAGGAGGGTTGTGA 59.017 52.381 0.00 0.00 0.00 3.58
124 125 1.004394 GGGTAAAGGAGGAGGGTTGTG 59.996 57.143 0.00 0.00 0.00 3.33
125 126 1.132168 AGGGTAAAGGAGGAGGGTTGT 60.132 52.381 0.00 0.00 0.00 3.32
126 127 1.670059 AGGGTAAAGGAGGAGGGTTG 58.330 55.000 0.00 0.00 0.00 3.77
127 128 2.452923 AAGGGTAAAGGAGGAGGGTT 57.547 50.000 0.00 0.00 0.00 4.11
128 129 2.452923 AAAGGGTAAAGGAGGAGGGT 57.547 50.000 0.00 0.00 0.00 4.34
129 130 3.181422 ACAAAAAGGGTAAAGGAGGAGGG 60.181 47.826 0.00 0.00 0.00 4.30
130 131 4.114015 ACAAAAAGGGTAAAGGAGGAGG 57.886 45.455 0.00 0.00 0.00 4.30
131 132 5.652452 CCATACAAAAAGGGTAAAGGAGGAG 59.348 44.000 0.00 0.00 0.00 3.69
132 133 5.075344 ACCATACAAAAAGGGTAAAGGAGGA 59.925 40.000 0.00 0.00 0.00 3.71
133 134 5.330233 ACCATACAAAAAGGGTAAAGGAGG 58.670 41.667 0.00 0.00 0.00 4.30
134 135 6.687604 CAACCATACAAAAAGGGTAAAGGAG 58.312 40.000 0.00 0.00 32.21 3.69
135 136 5.011227 GCAACCATACAAAAAGGGTAAAGGA 59.989 40.000 0.00 0.00 32.21 3.36
136 137 5.221541 TGCAACCATACAAAAAGGGTAAAGG 60.222 40.000 0.00 0.00 32.21 3.11
137 138 5.848406 TGCAACCATACAAAAAGGGTAAAG 58.152 37.500 0.00 0.00 32.21 1.85
141 142 6.405538 CAATATGCAACCATACAAAAAGGGT 58.594 36.000 0.00 0.00 36.79 4.34
193 194 6.401153 CGATTACTGAACAAAACACTAGCTCC 60.401 42.308 0.00 0.00 0.00 4.70
218 220 3.437395 TCAAAATACACGGTGGTATGCAC 59.563 43.478 13.48 0.00 34.32 4.57
238 240 5.833131 ACCCAGCTTTAAAACAAATCTCTCA 59.167 36.000 0.00 0.00 0.00 3.27
281 283 1.873591 CACTGTCCTAGCTGCGTTTTT 59.126 47.619 0.00 0.00 0.00 1.94
282 284 1.070134 TCACTGTCCTAGCTGCGTTTT 59.930 47.619 0.00 0.00 0.00 2.43
283 285 0.679505 TCACTGTCCTAGCTGCGTTT 59.320 50.000 0.00 0.00 0.00 3.60
284 286 0.244994 CTCACTGTCCTAGCTGCGTT 59.755 55.000 0.00 0.00 0.00 4.84
296 298 7.343316 AGCTAACTTACTAATCCATCTCACTGT 59.657 37.037 0.00 0.00 0.00 3.55
297 299 7.721402 AGCTAACTTACTAATCCATCTCACTG 58.279 38.462 0.00 0.00 0.00 3.66
377 379 5.265989 ACTTTGTTACCAACCTCTCCAAAA 58.734 37.500 0.00 0.00 0.00 2.44
577 583 5.392380 GCTACACCTATATCCAAATGCATGC 60.392 44.000 11.82 11.82 0.00 4.06
607 613 6.601613 AGTCATGTGAGTTTCCAAAAGTTGTA 59.398 34.615 0.00 0.00 0.00 2.41
611 617 7.122055 TGTTAAGTCATGTGAGTTTCCAAAAGT 59.878 33.333 8.26 0.00 38.53 2.66
754 760 9.664332 AGCCTCAAATTCATACTATATCATCAC 57.336 33.333 0.00 0.00 0.00 3.06
783 789 1.466167 CAGTTTCTCTTGTGGGCATCG 59.534 52.381 0.00 0.00 0.00 3.84
785 791 2.233271 CACAGTTTCTCTTGTGGGCAT 58.767 47.619 0.00 0.00 0.00 4.40
826 832 8.446273 CACTACACTAAAATCCAATCAAGTCAG 58.554 37.037 0.00 0.00 0.00 3.51
834 840 3.377172 GCCGCACTACACTAAAATCCAAT 59.623 43.478 0.00 0.00 0.00 3.16
835 841 2.745281 GCCGCACTACACTAAAATCCAA 59.255 45.455 0.00 0.00 0.00 3.53
836 842 2.352388 GCCGCACTACACTAAAATCCA 58.648 47.619 0.00 0.00 0.00 3.41
875 881 7.514127 AGAATGATATGTAACATCCCAGGTACT 59.486 37.037 0.00 0.00 43.88 2.73
1016 1022 7.488187 GCTTCAGCTGATGATAGTTGATTTA 57.512 36.000 28.50 4.47 37.67 1.40
1110 1116 6.799925 AGCACGAGGTCAAATTAAATTTAACG 59.200 34.615 12.74 11.19 0.00 3.18
1111 1117 8.515473 AAGCACGAGGTCAAATTAAATTTAAC 57.485 30.769 12.74 0.93 0.00 2.01
1138 1144 6.116126 GGGGCTGAATACAGGAATATATCAC 58.884 44.000 0.00 0.00 43.62 3.06
1139 1145 5.790096 TGGGGCTGAATACAGGAATATATCA 59.210 40.000 0.00 0.00 43.62 2.15
1365 1371 2.094182 GGTTATGAGCAGAAGGACGTGA 60.094 50.000 0.00 0.00 0.00 4.35
1404 1410 0.681733 GAGACCTGTTGAGGAGCACA 59.318 55.000 0.00 0.00 42.93 4.57
1440 1446 2.734591 GTCGTGTGTGGGCAGAGA 59.265 61.111 0.00 0.00 0.00 3.10
1445 1453 2.047560 GGTAGGTCGTGTGTGGGC 60.048 66.667 0.00 0.00 0.00 5.36
1446 1454 1.885163 GAGGGTAGGTCGTGTGTGGG 61.885 65.000 0.00 0.00 0.00 4.61
1453 1461 0.966920 CACAACAGAGGGTAGGTCGT 59.033 55.000 0.00 0.00 0.00 4.34
1457 1465 1.202582 CTCGTCACAACAGAGGGTAGG 59.797 57.143 0.00 0.00 0.00 3.18
1462 1470 1.728971 GATTGCTCGTCACAACAGAGG 59.271 52.381 0.00 0.00 32.96 3.69
1471 1479 2.002586 GCTTGCTAAGATTGCTCGTCA 58.997 47.619 0.00 0.00 0.00 4.35
1473 1481 2.005451 CAGCTTGCTAAGATTGCTCGT 58.995 47.619 0.00 0.00 0.00 4.18
1477 1485 4.367386 AATCACAGCTTGCTAAGATTGC 57.633 40.909 15.83 0.00 0.00 3.56
1487 1495 1.959747 CGTGCAGAAATCACAGCTTG 58.040 50.000 0.00 0.00 34.27 4.01
1488 1496 0.239347 GCGTGCAGAAATCACAGCTT 59.761 50.000 0.00 0.00 34.27 3.74
1566 1574 0.678048 GGCTTCTGGTTTGCGGATCT 60.678 55.000 0.00 0.00 0.00 2.75
1572 1580 0.595095 CTCTGTGGCTTCTGGTTTGC 59.405 55.000 0.00 0.00 0.00 3.68
1650 1664 2.506217 CGAGGCGCGCTCTGTTTA 60.506 61.111 32.29 0.00 0.00 2.01
1680 1694 6.106673 ACTTTGTGTATACTATGTGTGGAGC 58.893 40.000 4.17 0.00 0.00 4.70
1737 1751 3.991605 AAGTATCGCTGCACTTAAACG 57.008 42.857 0.00 0.00 33.29 3.60
1896 1915 1.135915 ACAAACAACAGCATCGGCAAA 59.864 42.857 0.00 0.00 44.61 3.68
1898 1917 0.743688 AACAAACAACAGCATCGGCA 59.256 45.000 0.00 0.00 44.61 5.69
1901 1920 2.531103 CACACAACAAACAACAGCATCG 59.469 45.455 0.00 0.00 0.00 3.84
1964 1988 6.202954 GCAAGGAATCAACACGCTAGTATATT 59.797 38.462 0.00 0.00 0.00 1.28
2082 2107 2.486966 GTTGGCCTCGCTTCATGC 59.513 61.111 3.32 0.00 38.57 4.06
2083 2108 1.651240 CTGGTTGGCCTCGCTTCATG 61.651 60.000 3.32 0.00 35.27 3.07
2084 2109 1.377725 CTGGTTGGCCTCGCTTCAT 60.378 57.895 3.32 0.00 35.27 2.57
2085 2110 2.032528 CTGGTTGGCCTCGCTTCA 59.967 61.111 3.32 0.00 35.27 3.02
2086 2111 2.521958 TAGCTGGTTGGCCTCGCTTC 62.522 60.000 3.32 0.00 40.67 3.86
2087 2112 1.915078 ATAGCTGGTTGGCCTCGCTT 61.915 55.000 3.32 0.00 40.67 4.68
2088 2113 2.370445 ATAGCTGGTTGGCCTCGCT 61.370 57.895 3.32 7.16 42.09 4.93
2089 2114 2.182842 CATAGCTGGTTGGCCTCGC 61.183 63.158 3.32 0.00 35.27 5.03
2090 2115 2.182842 GCATAGCTGGTTGGCCTCG 61.183 63.158 3.32 0.00 35.27 4.63
2091 2116 1.825622 GGCATAGCTGGTTGGCCTC 60.826 63.158 3.32 0.00 41.39 4.70
2092 2117 2.276740 GGCATAGCTGGTTGGCCT 59.723 61.111 3.32 0.00 41.39 5.19
2093 2118 2.044053 TGGCATAGCTGGTTGGCC 60.044 61.111 14.30 12.70 44.82 5.36
2094 2119 1.039233 ATGTGGCATAGCTGGTTGGC 61.039 55.000 0.00 4.54 38.77 4.52
2095 2120 0.742505 CATGTGGCATAGCTGGTTGG 59.257 55.000 0.00 0.00 0.00 3.77
2096 2121 0.742505 CCATGTGGCATAGCTGGTTG 59.257 55.000 0.00 0.00 0.00 3.77
2097 2122 3.196040 CCATGTGGCATAGCTGGTT 57.804 52.632 0.00 0.00 0.00 3.67
2098 2123 4.993307 CCATGTGGCATAGCTGGT 57.007 55.556 0.00 0.00 0.00 4.00
2108 2133 2.086251 AACCAACTTGCGCCATGTGG 62.086 55.000 4.18 10.43 38.53 4.17
2109 2134 0.940519 CAACCAACTTGCGCCATGTG 60.941 55.000 4.18 0.00 0.00 3.21
2110 2135 1.363443 CAACCAACTTGCGCCATGT 59.637 52.632 4.18 0.00 0.00 3.21
2111 2136 1.373246 CCAACCAACTTGCGCCATG 60.373 57.895 4.18 0.00 0.00 3.66
2112 2137 3.050339 CCAACCAACTTGCGCCAT 58.950 55.556 4.18 0.00 0.00 4.40
2113 2138 3.910490 GCCAACCAACTTGCGCCA 61.910 61.111 4.18 0.00 0.00 5.69
2114 2139 4.662961 GGCCAACCAACTTGCGCC 62.663 66.667 4.18 0.00 38.35 6.53
2115 2140 4.999939 CGGCCAACCAACTTGCGC 63.000 66.667 2.24 0.00 34.57 6.09
2116 2141 4.999939 GCGGCCAACCAACTTGCG 63.000 66.667 2.24 0.00 34.57 4.85
2117 2142 4.999939 CGCGGCCAACCAACTTGC 63.000 66.667 2.24 0.00 34.57 4.01
2118 2143 4.341502 CCGCGGCCAACCAACTTG 62.342 66.667 14.67 0.00 34.57 3.16
2119 2144 2.962142 TTACCGCGGCCAACCAACTT 62.962 55.000 28.58 3.48 34.57 2.66
2120 2145 3.479127 TTACCGCGGCCAACCAACT 62.479 57.895 28.58 4.37 34.57 3.16
2121 2146 2.973316 CTTACCGCGGCCAACCAAC 61.973 63.158 28.58 0.00 34.57 3.77
2122 2147 2.670251 CTTACCGCGGCCAACCAA 60.670 61.111 28.58 8.82 34.57 3.67
2123 2148 2.677765 TTTCTTACCGCGGCCAACCA 62.678 55.000 28.58 2.10 34.57 3.67
2124 2149 1.310216 ATTTCTTACCGCGGCCAACC 61.310 55.000 28.58 0.00 0.00 3.77
2125 2150 0.098200 GATTTCTTACCGCGGCCAAC 59.902 55.000 28.58 3.43 0.00 3.77
2126 2151 0.035820 AGATTTCTTACCGCGGCCAA 60.036 50.000 28.58 18.89 0.00 4.52
2127 2152 0.035820 AAGATTTCTTACCGCGGCCA 60.036 50.000 28.58 11.22 33.79 5.36
2128 2153 1.092348 AAAGATTTCTTACCGCGGCC 58.908 50.000 28.58 4.16 34.61 6.13
2129 2154 2.913777 AAAAGATTTCTTACCGCGGC 57.086 45.000 28.58 5.95 34.61 6.53
2130 2155 5.789710 TTCTAAAAGATTTCTTACCGCGG 57.210 39.130 26.86 26.86 34.61 6.46
2131 2156 8.669394 AAATTTCTAAAAGATTTCTTACCGCG 57.331 30.769 0.00 0.00 34.61 6.46
2193 2218 4.569719 GGTCCTCACCTCCATCTAAAAA 57.430 45.455 0.00 0.00 40.00 1.94
2224 2249 8.808092 CCACTTTACATAACCCTCCATTTAAAA 58.192 33.333 0.00 0.00 0.00 1.52
2225 2250 7.093684 GCCACTTTACATAACCCTCCATTTAAA 60.094 37.037 0.00 0.00 0.00 1.52
2226 2251 6.378848 GCCACTTTACATAACCCTCCATTTAA 59.621 38.462 0.00 0.00 0.00 1.52
2227 2252 5.889289 GCCACTTTACATAACCCTCCATTTA 59.111 40.000 0.00 0.00 0.00 1.40
2228 2253 4.709886 GCCACTTTACATAACCCTCCATTT 59.290 41.667 0.00 0.00 0.00 2.32
2229 2254 4.264172 TGCCACTTTACATAACCCTCCATT 60.264 41.667 0.00 0.00 0.00 3.16
2230 2255 3.268334 TGCCACTTTACATAACCCTCCAT 59.732 43.478 0.00 0.00 0.00 3.41
2231 2256 2.645297 TGCCACTTTACATAACCCTCCA 59.355 45.455 0.00 0.00 0.00 3.86
2232 2257 3.014623 GTGCCACTTTACATAACCCTCC 58.985 50.000 0.00 0.00 0.00 4.30
2233 2258 3.939592 GAGTGCCACTTTACATAACCCTC 59.060 47.826 0.00 0.00 0.00 4.30
2234 2259 3.618997 CGAGTGCCACTTTACATAACCCT 60.619 47.826 0.00 0.00 0.00 4.34
2235 2260 2.676342 CGAGTGCCACTTTACATAACCC 59.324 50.000 0.00 0.00 0.00 4.11
2236 2261 2.095372 GCGAGTGCCACTTTACATAACC 59.905 50.000 0.00 0.00 33.98 2.85
2237 2262 3.000727 AGCGAGTGCCACTTTACATAAC 58.999 45.455 0.00 0.00 44.31 1.89
2238 2263 3.000041 CAGCGAGTGCCACTTTACATAA 59.000 45.455 0.00 0.00 44.31 1.90
2239 2264 2.616960 CAGCGAGTGCCACTTTACATA 58.383 47.619 0.00 0.00 44.31 2.29
2240 2265 1.442769 CAGCGAGTGCCACTTTACAT 58.557 50.000 0.00 0.00 44.31 2.29
2241 2266 0.602638 CCAGCGAGTGCCACTTTACA 60.603 55.000 0.00 0.00 44.31 2.41
2242 2267 0.602905 ACCAGCGAGTGCCACTTTAC 60.603 55.000 0.00 0.00 44.31 2.01
2243 2268 0.970640 TACCAGCGAGTGCCACTTTA 59.029 50.000 0.00 0.00 44.31 1.85
2244 2269 0.320771 CTACCAGCGAGTGCCACTTT 60.321 55.000 0.00 0.00 44.31 2.66
2245 2270 1.293498 CTACCAGCGAGTGCCACTT 59.707 57.895 0.00 0.00 44.31 3.16
2246 2271 2.650116 CCTACCAGCGAGTGCCACT 61.650 63.158 0.00 0.00 44.31 4.00
2247 2272 2.125512 CCTACCAGCGAGTGCCAC 60.126 66.667 0.00 0.00 44.31 5.01
2248 2273 4.082523 GCCTACCAGCGAGTGCCA 62.083 66.667 0.00 0.00 44.31 4.92
2249 2274 3.775654 AGCCTACCAGCGAGTGCC 61.776 66.667 0.00 0.00 44.31 5.01
2250 2275 2.510238 CAGCCTACCAGCGAGTGC 60.510 66.667 0.00 0.00 43.24 4.40
2251 2276 1.140589 CTCAGCCTACCAGCGAGTG 59.859 63.158 0.00 0.00 38.01 3.51
2252 2277 2.055042 CCTCAGCCTACCAGCGAGT 61.055 63.158 0.00 0.00 38.01 4.18
2253 2278 2.055042 ACCTCAGCCTACCAGCGAG 61.055 63.158 0.00 0.00 38.01 5.03
2254 2279 2.037367 ACCTCAGCCTACCAGCGA 59.963 61.111 0.00 0.00 38.01 4.93
2255 2280 2.185350 CACCTCAGCCTACCAGCG 59.815 66.667 0.00 0.00 38.01 5.18
2256 2281 0.976073 TACCACCTCAGCCTACCAGC 60.976 60.000 0.00 0.00 0.00 4.85
2257 2282 1.568504 TTACCACCTCAGCCTACCAG 58.431 55.000 0.00 0.00 0.00 4.00
2258 2283 2.263895 ATTACCACCTCAGCCTACCA 57.736 50.000 0.00 0.00 0.00 3.25
2259 2284 3.646736 AAATTACCACCTCAGCCTACC 57.353 47.619 0.00 0.00 0.00 3.18
2326 2351 4.223032 AGAGTCCTCGCCTTCATCTAAAAA 59.777 41.667 0.00 0.00 34.09 1.94
2327 2352 3.769844 AGAGTCCTCGCCTTCATCTAAAA 59.230 43.478 0.00 0.00 34.09 1.52
2328 2353 3.131223 CAGAGTCCTCGCCTTCATCTAAA 59.869 47.826 0.00 0.00 34.09 1.85
2329 2354 2.690497 CAGAGTCCTCGCCTTCATCTAA 59.310 50.000 0.00 0.00 34.09 2.10
2330 2355 2.302260 CAGAGTCCTCGCCTTCATCTA 58.698 52.381 0.00 0.00 34.09 1.98
2331 2356 1.110442 CAGAGTCCTCGCCTTCATCT 58.890 55.000 0.00 0.00 34.09 2.90
2332 2357 0.820871 ACAGAGTCCTCGCCTTCATC 59.179 55.000 0.00 0.00 34.09 2.92
2333 2358 0.534412 CACAGAGTCCTCGCCTTCAT 59.466 55.000 0.00 0.00 34.09 2.57
2334 2359 0.827925 ACACAGAGTCCTCGCCTTCA 60.828 55.000 0.00 0.00 34.09 3.02
2335 2360 0.109039 GACACAGAGTCCTCGCCTTC 60.109 60.000 0.00 0.00 41.56 3.46
2336 2361 1.968310 GACACAGAGTCCTCGCCTT 59.032 57.895 0.00 0.00 41.56 4.35
2337 2362 3.688086 GACACAGAGTCCTCGCCT 58.312 61.111 0.00 0.00 41.56 5.52
2357 2382 9.088512 AGTTGTATGCACGTTTTCATTTAAAAA 57.911 25.926 0.00 0.00 38.76 1.94
2358 2383 8.635877 AGTTGTATGCACGTTTTCATTTAAAA 57.364 26.923 0.00 0.00 34.66 1.52
2359 2384 8.635877 AAGTTGTATGCACGTTTTCATTTAAA 57.364 26.923 0.00 0.00 0.00 1.52
2360 2385 8.635877 AAAGTTGTATGCACGTTTTCATTTAA 57.364 26.923 0.00 0.00 0.00 1.52
2361 2386 8.132362 AGAAAGTTGTATGCACGTTTTCATTTA 58.868 29.630 12.84 0.00 0.00 1.40
2362 2387 6.978080 AGAAAGTTGTATGCACGTTTTCATTT 59.022 30.769 12.84 0.00 0.00 2.32
2363 2388 6.503524 AGAAAGTTGTATGCACGTTTTCATT 58.496 32.000 12.84 0.00 0.00 2.57
2364 2389 6.017109 AGAGAAAGTTGTATGCACGTTTTCAT 60.017 34.615 12.84 3.86 0.00 2.57
2365 2390 5.295787 AGAGAAAGTTGTATGCACGTTTTCA 59.704 36.000 12.84 0.00 0.00 2.69
2366 2391 5.748592 AGAGAAAGTTGTATGCACGTTTTC 58.251 37.500 0.00 6.02 0.00 2.29
2367 2392 5.751243 AGAGAAAGTTGTATGCACGTTTT 57.249 34.783 0.00 0.00 0.00 2.43
2368 2393 5.751243 AAGAGAAAGTTGTATGCACGTTT 57.249 34.783 0.00 0.00 0.00 3.60
2369 2394 6.854496 TTAAGAGAAAGTTGTATGCACGTT 57.146 33.333 0.00 0.00 0.00 3.99
2370 2395 6.563381 CGTTTAAGAGAAAGTTGTATGCACGT 60.563 38.462 0.00 0.00 0.00 4.49
2371 2396 5.783654 CGTTTAAGAGAAAGTTGTATGCACG 59.216 40.000 0.00 0.00 0.00 5.34
2372 2397 6.790825 GTCGTTTAAGAGAAAGTTGTATGCAC 59.209 38.462 0.00 0.00 0.00 4.57
2373 2398 6.346279 CGTCGTTTAAGAGAAAGTTGTATGCA 60.346 38.462 0.00 0.00 0.00 3.96
2374 2399 6.007677 CGTCGTTTAAGAGAAAGTTGTATGC 58.992 40.000 0.00 0.00 0.00 3.14
2375 2400 7.096353 TGACGTCGTTTAAGAGAAAGTTGTATG 60.096 37.037 11.62 0.00 0.00 2.39
2376 2401 6.919662 TGACGTCGTTTAAGAGAAAGTTGTAT 59.080 34.615 11.62 0.00 0.00 2.29
2377 2402 6.197096 GTGACGTCGTTTAAGAGAAAGTTGTA 59.803 38.462 11.62 0.00 0.00 2.41
2378 2403 5.005107 GTGACGTCGTTTAAGAGAAAGTTGT 59.995 40.000 11.62 0.00 0.00 3.32
2379 2404 5.005012 TGTGACGTCGTTTAAGAGAAAGTTG 59.995 40.000 11.62 0.00 0.00 3.16
2380 2405 5.104374 TGTGACGTCGTTTAAGAGAAAGTT 58.896 37.500 11.62 0.00 0.00 2.66
2381 2406 4.675510 TGTGACGTCGTTTAAGAGAAAGT 58.324 39.130 11.62 0.00 0.00 2.66
2382 2407 4.148348 CCTGTGACGTCGTTTAAGAGAAAG 59.852 45.833 11.62 0.00 0.00 2.62
2383 2408 4.046462 CCTGTGACGTCGTTTAAGAGAAA 58.954 43.478 11.62 0.00 0.00 2.52
2384 2409 3.316029 TCCTGTGACGTCGTTTAAGAGAA 59.684 43.478 11.62 0.00 0.00 2.87
2385 2410 2.880268 TCCTGTGACGTCGTTTAAGAGA 59.120 45.455 11.62 0.00 0.00 3.10
2386 2411 3.278367 TCCTGTGACGTCGTTTAAGAG 57.722 47.619 11.62 0.41 0.00 2.85
2387 2412 3.571571 CATCCTGTGACGTCGTTTAAGA 58.428 45.455 11.62 3.27 0.00 2.10
2388 2413 2.666508 CCATCCTGTGACGTCGTTTAAG 59.333 50.000 11.62 3.65 0.00 1.85
2389 2414 2.679450 CCATCCTGTGACGTCGTTTAA 58.321 47.619 11.62 0.00 0.00 1.52
2390 2415 1.670674 GCCATCCTGTGACGTCGTTTA 60.671 52.381 11.62 0.00 0.00 2.01
2391 2416 0.949105 GCCATCCTGTGACGTCGTTT 60.949 55.000 11.62 0.00 0.00 3.60
2392 2417 1.374252 GCCATCCTGTGACGTCGTT 60.374 57.895 11.62 0.00 0.00 3.85
2393 2418 2.261671 GCCATCCTGTGACGTCGT 59.738 61.111 11.62 0.00 0.00 4.34
2394 2419 2.880879 CGCCATCCTGTGACGTCG 60.881 66.667 11.62 0.00 0.00 5.12
2395 2420 3.188786 GCGCCATCCTGTGACGTC 61.189 66.667 9.11 9.11 35.98 4.34
2396 2421 4.760047 GGCGCCATCCTGTGACGT 62.760 66.667 24.80 0.00 35.98 4.34
2400 2425 4.738998 TTGGGGCGCCATCCTGTG 62.739 66.667 30.85 0.00 0.00 3.66
2401 2426 3.721370 GATTGGGGCGCCATCCTGT 62.721 63.158 30.85 13.48 0.00 4.00
2402 2427 2.908940 GATTGGGGCGCCATCCTG 60.909 66.667 30.85 0.00 0.00 3.86
2403 2428 3.419580 TGATTGGGGCGCCATCCT 61.420 61.111 30.85 11.46 0.00 3.24
2404 2429 2.337879 TAGTGATTGGGGCGCCATCC 62.338 60.000 30.85 21.99 0.00 3.51
2405 2430 0.886490 CTAGTGATTGGGGCGCCATC 60.886 60.000 30.85 22.60 0.00 3.51
2406 2431 1.149174 CTAGTGATTGGGGCGCCAT 59.851 57.895 30.85 13.99 0.00 4.40
2407 2432 1.847798 AACTAGTGATTGGGGCGCCA 61.848 55.000 30.85 20.22 0.00 5.69
2408 2433 0.679960 AAACTAGTGATTGGGGCGCC 60.680 55.000 21.18 21.18 0.00 6.53
2409 2434 0.733150 GAAACTAGTGATTGGGGCGC 59.267 55.000 0.00 0.00 0.00 6.53
2410 2435 2.107950 TGAAACTAGTGATTGGGGCG 57.892 50.000 0.00 0.00 0.00 6.13
2411 2436 3.356290 ACATGAAACTAGTGATTGGGGC 58.644 45.455 0.00 0.00 0.00 5.80
2412 2437 4.588899 TGACATGAAACTAGTGATTGGGG 58.411 43.478 0.00 0.00 0.00 4.96
2413 2438 5.649395 ACATGACATGAAACTAGTGATTGGG 59.351 40.000 22.19 0.00 0.00 4.12
2414 2439 6.748333 ACATGACATGAAACTAGTGATTGG 57.252 37.500 22.19 0.00 0.00 3.16
2415 2440 7.536281 CACAACATGACATGAAACTAGTGATTG 59.464 37.037 22.19 13.03 0.00 2.67
2416 2441 7.587629 CACAACATGACATGAAACTAGTGATT 58.412 34.615 22.19 0.00 0.00 2.57
2417 2442 6.348786 GCACAACATGACATGAAACTAGTGAT 60.349 38.462 22.19 0.00 0.00 3.06
2418 2443 5.049474 GCACAACATGACATGAAACTAGTGA 60.049 40.000 22.19 0.00 0.00 3.41
2419 2444 5.149273 GCACAACATGACATGAAACTAGTG 58.851 41.667 22.19 17.80 0.00 2.74
2420 2445 4.216257 GGCACAACATGACATGAAACTAGT 59.784 41.667 22.19 7.66 35.73 2.57
2421 2446 4.669965 CGGCACAACATGACATGAAACTAG 60.670 45.833 22.19 7.53 35.12 2.57
2422 2447 3.188254 CGGCACAACATGACATGAAACTA 59.812 43.478 22.19 0.00 35.12 2.24
2423 2448 2.030893 CGGCACAACATGACATGAAACT 60.031 45.455 22.19 0.00 35.12 2.66
2424 2449 2.031245 TCGGCACAACATGACATGAAAC 60.031 45.455 22.19 6.34 35.12 2.78
2425 2450 2.225467 TCGGCACAACATGACATGAAA 58.775 42.857 22.19 0.00 35.12 2.69
2426 2451 1.805943 CTCGGCACAACATGACATGAA 59.194 47.619 22.19 0.00 35.12 2.57
2427 2452 1.001860 TCTCGGCACAACATGACATGA 59.998 47.619 22.19 0.00 35.12 3.07
2428 2453 1.395954 CTCTCGGCACAACATGACATG 59.604 52.381 14.02 14.02 35.12 3.21
2429 2454 1.676916 CCTCTCGGCACAACATGACAT 60.677 52.381 0.00 0.00 35.12 3.06
2430 2455 0.320683 CCTCTCGGCACAACATGACA 60.321 55.000 0.00 0.00 35.12 3.58
2431 2456 0.037326 TCCTCTCGGCACAACATGAC 60.037 55.000 0.00 0.00 0.00 3.06
2432 2457 0.684535 TTCCTCTCGGCACAACATGA 59.315 50.000 0.00 0.00 0.00 3.07
2433 2458 0.798776 GTTCCTCTCGGCACAACATG 59.201 55.000 0.00 0.00 0.00 3.21
2434 2459 0.687354 AGTTCCTCTCGGCACAACAT 59.313 50.000 0.00 0.00 0.00 2.71
2467 2492 1.092348 AGATGGAACGATCGTCACGA 58.908 50.000 22.98 15.76 41.13 4.35
2473 2498 3.747099 AAAAAGCAGATGGAACGATCG 57.253 42.857 14.88 14.88 0.00 3.69
2531 2718 1.954528 CCAGACTTGTGCTGGCTTG 59.045 57.895 0.00 0.00 45.66 4.01
2573 2760 2.278332 ACTCCAGACTTGGCTTTTCC 57.722 50.000 0.00 0.00 44.63 3.13
2579 2766 0.312102 GTTGCAACTCCAGACTTGGC 59.688 55.000 22.36 0.00 44.63 4.52
2580 2767 0.954452 GGTTGCAACTCCAGACTTGG 59.046 55.000 27.64 0.00 46.49 3.61


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.