>input_sequence_74230
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---------------------------------------------ATGGCAGGACAATCGCTAAATCAACTATCATCAGC
TGAAGCTATCTTGGTGGGAGCCTTGTCCTCTGGTGTTAATGTAAGAAATACTGCAATGTGCGTTATTATGTTCACCGTTA
AATTTAATTTGACCTCGTGCTTTGTGATATATTCCTGTATTCAGCCCCAGATTTAGTCATAATATTGTTCCCTTTTTTAT
GTGGTTATGGAATGCACAAATAACTGTAATGAAGTATCCTAACCGATGTTTATCTTGTTGGTGTAGGCTCCCACGTGGGT
CGTGCTCCAGATCACATTTTTGCTACTGGCATTCTGCTTCACCGCGATGCTTTACCTAGCCTTTTTCTCAAGCGACTTTG
TGATCGTCGGTCACGTCCTTCTGCTCATAACCATCGGCGCGGTTCTATTTGTGCTCCTCAACAGGTCTCCCCTGTCCTCT
CCTACTCTC--TGCCCACACACGACCTACCCTCTGTTGTGACGAGCAATCTTAGCAAGCTGTGATTTCTGCACGCTGCAG
GTTCCTCGCGGAGACCGGCTTCGTCCCGGTCGAACAGCAGATGCAGGAGATAGAGATCCGCAAACCAGAAGCCACAGAGA
AAGACAAGAGCAAATGA---------------------------------------------------------------
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>chr6A_1_TraesCS6A01G090100
CATTTTCCACCACACCCGGGTTCCGATGTAGCGCGTCGCTGAGAGGGTTACGCCCCAACGAAAATCTTTTGGGTTTCATC
TCCATAAGAGTGGCTGAGTTTTTACGTTGGCTCGCCAAGCCTATCACAACCCTCCTCCTTTACCCTTTTTGTATGGTTGC
ATATTGCCGTTTATTTAGAGCTGCTGTTTATTTGGAGCTAGTGTTTT-GTTCAGTAATCGTGCATACCACCGTGTATTTT
GAGAGATTTGTTTTAAAGCTGGGTTGGTAAGAAAGTAAAAAAAAAAACGCAGCTAGGACAGTGAGATGGATTAGTAAGTT
AGCTTGTGACTACCGGTGTCCTTGACCTAGGTTGGTCAGAATTCACATAGTTGATCTATTTTGGAGAGGTTGGTAACAAA
GTCAACAGTAAATAGTTTGGGATGCTCATTCGAAGTATTGGTTTACCCGACGAAGTTATTGGTAGGATCTTATG----TT
ATAACCCAGAGTATTGCCTGCTATGGTTTTATGTTCAAATGGGTCTGTATTTATGTTTTCACTCTTGCATTATTGCATAT
ATTTTTTGGCACTAAGCAAATAGCATGCATTTGGATATAGGTGTAGCACTCCTACAACTTTTGGAAACTCACATGACTTA
ACATATACTTAGTGCATCGTATATCTTGCTTAGTGTTACAGATTGTTGGCATGGTGCTGTGATTATCATATGTTTATGTG
CAGTAACATCGAGCTTTATACCTGCTTTTATGCTTACAAGTGATGATATAGTATGAATTTGAGGCTGTCGATGCCCACAA
GAGAAACTGTGTTGGCTTTTCTGAATAAATACTGACTTGATTGGATTTTAGTGTAGTGCGGCGGCACTTAAGGCAGAATT
AGTACCTGGGATGTTACATATCATTCTACATTTATGTGTCATCTAGAACCATTATTGTTTCACGCAGAAGCATATAGGTG
ATAACGTATTGTTATTTGTGCCAGTGCCTATAAATTTGGGTGAGAATGGCAGGACAATCGCTAAATCAACTATCATCAGC
TGAAGCTATCTTGGTGGGAGCCTTGTCCTCTGGTGTTAATGTAAGAAATACTGCAATGTGCGTTATTATGTTCACCGTTA
AATTTAATTTGACCTCGTGCTTTGTGATATATTCCTGTATTCAGCCCCAGATTTAGTCATAATATTGTTCCCTTTTTTAT
GTGGTTATGGAATGCACAAATAACTGTAATGAAGTATCCTAACCGATGTTTATCTTGTTGGTGTAGGCTCCCACGTGGGT
CGTGCTCCAGATCACATTTTTGCTACTGGCATTCTGCTTCACCGCGATGCTTTACCTAGCCTTTTTCTCAAGCGACTTTG
TGATCGTCGGTCACGTCCTTCTGCTCATAACCATCGGCGCGGTTCTATTTGTGCTCCTCAACAGGTCTCCCCTGTCCTCT
CCTACTCTC--TGCCCACACACGACCTACCCTCTGTTGTGACGAGCAATCTTAGCAAGCTGTGATTTCTGCACGCTGCAG
GTTCCTCGCGGAGACCGGCTTCGTCCCGGTCGAACAGCAGATGCAGGAGATAGAGATCCGCAAACCAGAAGCCACAGAGA
AAGACAAGAGCAAATGAGCCTTTTGGGCCCAACTTTTTTACATTACATTATGAT------GATTAAACAGAGCGCGCCTC
GCTGTACGCAACGGCTCCACACATAGTATACACAAAGTTCAGATAGACGCTAATTGCACAGGTGCACATCCGT-----TT
AAGTGCAGCGATACTTTGGAGCGGGGCAGCTTCTTCAGCCATACGCTCGGCCGCTTCGTCAGTCCTTCGGTTTGCCGCTC
TTCTTCTTCTTGATGTAGCAGAAGCACGAGCAGCAGGGGAACTGGAACAGGAACTTCATTGGTCTGGGATGGGATTTGCC
GATGCTGTTGTTTGTTGTGTGC-----GTTGGTGTGTTGCTGAAGGCGGGTCTGCATCCGGCCGATAAATATACTAGCGT
GTTGATTCCTTGCTTGGCTGGTTATGTTATCACAGGACGGTGGAGATTGTGGTGCTTTCTTGTGTGT-GGGGTGGTTTGT
GCGATTAATTAAAACCATTAAGCTACGCATGAAGCGAGGCCAACCAGCTATGCCACATGGCGCAAGTTGGTTGGCCGCGG
TAAGAAATCTTTTAGAAATTTTTTAGATGAAAGTGTGAATTATTTTTTAAATGTATTTTTTTAGATGGAGGTGAGGACCT
CTGATATTTTTTAAATGGAGGGTTATGTAAAGTGGCACTCGCTGGTAGGCTGAGGTGGTAATTTTTTTATTTTTTTTAGA
TGAAGGTGAGAATTTTTTTTCTGAGATGTTTTTTTAGATGAAGGCGAGGACTCTGTGTCTTTTTTTAAATGAAAACGTGC
ATACAACTTTCTCTTAAACGACGTCACAGGATGGCGCCCCAATCACTAGTTTCATGTCATGTTGTGCCGAGAGGAACTTG
TCGGCAAGTAATCGTGACGATCGTTCCATCTGCTTTTTACCATAATATATCAACTGCAA---------------------
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-------------------------------------------------------------AGTATAAAACCATTCTCAA
GCCAGCACAAGTCTGGAGTTACCCTCTGTAAAAGGAAGGGGAAAAGCCAAGTCTGGAGTTGCAACCTTTGCTAGTG
>chr6B_139
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----------------------------------------------------------TTTCCCCTTTTTGTATGGTTGC
ATATTGCTGTTTATATAGAGCTGCTGTTTATTTAGAGCTAGTGTTTTTGTTCGGTAATCCTGCATACCACCGCCTATTT-
GAGAGATTTGTTTTAAAGCTGGGTTGGTAAGAAAGTAAAAAGGCGCAACTAGGCT----AGTGAGATGGATTAGTAAGTT
AGCTTGTGACTACCGGTGTCCTTGACCTAGGTTGGTCAGAATTCACATAGTTGATCTAGTTTGGAGAGGTTGGTAACAAA
GTCAACAGTAAATAGTTTGGTATTCTCATTCGACGTATTGGTTTACCTGACGAAGTTATTGGCAGGATCTTATG----TT
ATAACCCAGAGTATTGCTTGTTATGGTTTTATGTTCAAATGGGTCTGTATTTATGTTTTCACTCTTGCTTTATTGCATAT
ATTTTTTGGCACTAAGCAAATAACATGCATTTGGATATTGGTGTAGCACTCCCACATTTTTTGGAAACTCACATGACTTG
ACATATACTTAGTGCATCGTATATCTTGCTTAGTGTTACAGATTGTTGGCATGGTGCTGTGATTATCACATGTTTATGTG
CAGTAACATCGAGCTTTATACCTGCTTTTATGCTTACAATTGATGATATAGTATGAATTTGAGGCTGTTGTTGCCCACAA
GAGAAACTGTGTTGGCCTTTTTGAATAAATATTGACTTGGCCGGATTTTTGTGTAGTGCGGCGGCACTTAAGGCAGAATT
GGTACCTGGCATGTTGCAAATCATTCTACATTTATGTGTTATCTAGAACCATTATTGTTTCACGCAGAAGCATATAGGTG
ATAATGTATTGTTATTTGTGCCAGTGCCTATAAATTTGGGTGAGAATGGCAGGACAATCGCCAAATCAAGTATCATCAGC
TGAAGCTATCTTGGTGGGAGCCTTGTCCTCTGGTGTTAATGTAAGAAATACTGCAATGTGCGTTATTATGTTCGTTCTTA
AATTTAATTTGATCTCGTGCTTTACGATATATTCCTGTATTCAGCCCCAGATTTAGTCATAATATTGTTCCCTTTTTTAT
GTGGTTATGGAATGCGCAAATAACTGTAATAAAGTATCCTAACCGATGTTTATCTTGTTGGTGTAGGCTCCCACGTGGGT
CGTGCTCCAGATCACATTTTTGCTACTGGCATTCTGCTTCACCGCCATGCTCTACCTAGCCTTTTTCTCAAGCGACTTTG
TGATCGTCGGGCACGTCCTTCTGCTCATAACCATCGGCGTGGTTCTATTCGTGCTCCTCAACAGGTCTCCCCTGTCCTCT
CCTACCCTCACTCTCCACACGCTATCTACACTCTGTTGCGGCGAACAATCTTAGTGAGCTGAGATTTCTGCGCGTTGCAG
GTTCCTCGCGGAGACTGGCTTCGTCCCGGTCGAACAGCAGATGCAGGAGATAGGGATCCACAAACCAGAAGCCACAGAGA
AAGACAAGAGCAACTGAGCCACTTGGGCCTGACTTTTTTACATTACATTATGAT---GATGATGAAACAGAGTGTGCCAC
GCTGTACGTGACGACTCCACACATAGCATACACAAAGTTCAGATAGATGCTAATTGCATAGGTGCACATCTGT-----TT
AAGTGCAGCGATACTTTGGAGCGGAGCAGCATCTTCAGCCATACGCTCGGCCGCTTCGTCAGTCCTTTGGTTTGCCGCTC
TTCTTCTTCTTGACGTAGCAGAAGCACGAGCAGCAGGGGAACTGGAACAGGAACTTCATTGGTCTGGGATGGGACTCGCT
GATGCTGTTGTTTGTTGCGTGCGTTGAGTTGGTGTGTTGCTGAAGGCGGGTCTGCATCCGGCCT-TAGATATACTAGCGT
GTTGATTCCTTGCTTGGCTGGTTGTGTTATCACAGGACGGTGGAGATTGTGGTGCTTTCTTCTGTGT-GGGGTGGTTTGT
GCGATTAATT----------------------------------------------------------------------
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>chrUn_139
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----------------------------------------------------------TTTCCCCTTTTTGTATGGTTGC
ATATTGCCGTTTATTTAGAGCTAGTGT----------------TTTT-GTTCAGTAATCCTGCATACCACCGCGTATTT-
GAGATATTTGTTTTAAAGCTGGGTTGGTAAGAAAGTAAAAAG-----CGCAGCTAGG-----------------------
---------------------------------------------------------------------------ACAAA
GTCAACAGTAAATAATTTGGGATGCTCATTCGAAGTATTGGTTTACCCGACGAAGTTATTGGCAGGATCTTATGTTACTT
ATAACCCAGAGTATTGCCTGCTACGGTTTTATGTTCAAATGGGTCTGTATTTATGTTTTCACGCTTGCATTATTGCATAT
ATTTTTTGGCACTAAGCAAATAACATGCATTTCGATATAGGTGTAGCACTCCCACATCTTTTGGAAACTCACATGACATA
ACATATACTTAGTGCATCGTATATCTTGCTTAGTGTTACAGATTGTTGGCATGGTGCTGTGGTTATCATATGTTTATGTG
CAGTAGCATCGAGCTTTATACCTGCTT-----------------------------------------------------
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------------GTTGCAAATCATTCTACATTTATGTGTTATCTAGAACCATTATTGTTTGACGCAGAAGCATATAGGTG
ATAACGTATTGTTATTTGTGCCAGTGCCTATAAATTTGGGTGAGAATGGCAGGACAATCGCCAAATCAAGTATCATCAGC
TGAAGCTATCTTGGTGGGAGCCTTATCCTCTGGTGTTAATGTAAGAAATACTGCAATGTGCGTTATTATGTTCACTCTTA
AATTTAATTTGACCTCATGCTTTACGACATATTCCTGT-----------GATTTAGTCACAATATTGTTCCCTTTTTTAA
GTGGTTATGGAATGCACAAATAACTGTAA---AGTGTCCTAACCGACGTTTATCTTGTTGGTGTAGGCTCCCACGTGGGT
CGTGCTCCAGATCACATTTTTGCTGCTGGCATTCTGCTTCACCGCGATGCTTTACCTAGCCTTTTTCTCAAGCGACTTTG
TGATCGTCGGGCACGTCCTTCTGCTCATAACCATCGGCGCGGTTCTATTCGTGCTCCTCAACAGGTCTCCCCTGTCCTCT
CCTACCCTC--TCTCCACACGCGATCTACACTCTGTTGCGGCGAACAATCTTAGTGAGCTGAGATTTCTGCACGTTGCAG
GTTCCTCGCGGAGACCGGCTTCGTCCCTGTTGAACAACAGATGCAGGAGATGGGGATCCACAAACCAGAAGCCACAGAGC
AAGACAAGAGCAAATGAGCCACTTGGGCCCAACTTTTTTACATTACATTATGATGACGATGATGAAACAGAGCGCGCCAC
GCTGTACGCAACGACTCCACACAGTATACATCTAAAGGTTCAGCAGAAGCTACTTCCACAGCCATAGGTGTACATCTGTC
AAGTGCAGTGATGCTTTAGAGTGGAATAGCTTCGTCGGGCATACGCTCGGCCGCGTCGTCAGTCCTTCGATTTGCTGCTC
TTCTTCTTCTTGATGTAGCAGAAGCAGGAGCAGCAGGGGAACTGGAACAGGAACTTCATTGTTCTGGGATGGGACTCGCT
GATGCTGCTGTTTGTTGTGTGC-----GTTGGTGTGTTGCTGAAGGCGGGGCTGCATCCGGCCGATAGATATACTGGCGT
GTTGATTCCTTGCTTGGCTGGTTATGTTATCACAGGACGGTGGAGATTGTGGTGCTTTCTTGTGTGTGGGGGTGGTTTGT
GCGATTAATTTCATTGTGT-------------------------------------------------------------
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-----------------------------------------------------------TGTTGTGCCGAGAAGAATTTG
TCGGCAAGTAACCGTGATGATCGTTCCATCTGCTTTTTACCATAATATATCAACTGCAAAGTACTCCCTCCGTTTCTAAA
TACTTGTCTTTCTAGGCATTTCAACAAGTGACTACATACGGAGCAAACTGAGTGAATCTACACTCTAAAATATGTCTACT
TACATCCATATGTGGTAGTCATTTGAAATGTCTAGAAAGACAAATATTTAGGAACGGAGGGAGTATAAAACCATTCTTAA
GCCAGCACAAGTCTGGAGTTACCCTCTGTAAAAGGAAGGAGAAAA--CAAGTCTGGAGTTGCAACCTTTGCTAGTG
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---S------------------
---------------------------------S-------------------------S------------S------S
-----------------------------------------SSSSS-----------SS---------------------
----------------------------------------------------------S---------------------
--------------------------------------------------------------S-----------------
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----------------------S-----------------------------S---S-----------------------
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---------------------------------------S----------------------------S-S---------
----------------S---S----------S-------SSS-------S------------------------------
S--------S-----S--S--------------------S----------------------------------------
-------------------------------------------------------------S-------S----------
---------------------------------------------------------------------------SS---
-----------------------SS-------------------------------------------------------
------------------------------S-------------------------------------------------
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----------S--------------------------------------S------------------------------
-----S------SS------S---S----S--------S-S---S---------SS-----S------------S-----
-----------------------------------------------------S-----S--------------------
--------------------SS-----------------------------------------S--------------S-
-------------S---------------------------------S----------------------S---------
------------------------S-------------------------------------------------------
--------------------------------------------------------------------------S-S--S
-------------------------------------------------------------------S------------
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----------SS-SSSSS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-------------S---S---
-----------S-----S--------------------------------------------------------------
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-----------------------------------------------------------------------------S--
---------------------------------------S-----SS-----------------------------
>forward_133
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---------------------------------GCCAAGCCTATCACAACCCT---------------------------
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>reverse_2151
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----------------------------------------------------------------------TTGGCCGCGG
TAAGAAATCT----------------------------------------------------------------------
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