Multiple sequence alignment - TraesCS6A01G079300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G079300 chr6A 100.000 2228 0 0 1 2228 48651077 48653304 0.000000e+00 4115.0
1 TraesCS6A01G079300 chr6A 87.225 227 25 4 1453 1678 249346130 249346353 2.840000e-64 255.0
2 TraesCS6A01G079300 chr6A 84.615 91 14 0 1874 1964 485760309 485760399 8.470000e-15 91.6
3 TraesCS6A01G079300 chr6A 82.955 88 14 1 1156 1242 35946508 35946421 6.600000e-11 78.7
4 TraesCS6A01G079300 chr6D 92.945 1304 78 13 510 1802 37414740 37416040 0.000000e+00 1886.0
5 TraesCS6A01G079300 chr6D 88.846 520 36 14 1 508 37414189 37414698 8.740000e-174 619.0
6 TraesCS6A01G079300 chr6B 93.727 813 40 10 608 1414 87507286 87508093 0.000000e+00 1208.0
7 TraesCS6A01G079300 chr6B 88.306 496 43 13 1 495 87501147 87501628 4.120000e-162 580.0
8 TraesCS6A01G079300 chr7D 88.136 236 23 5 1452 1686 578708531 578708300 2.180000e-70 276.0
9 TraesCS6A01G079300 chr7D 88.000 225 24 3 1451 1674 617060779 617060557 1.700000e-66 263.0
10 TraesCS6A01G079300 chr7B 87.395 238 23 6 1452 1686 642459567 642459334 1.310000e-67 267.0
11 TraesCS6A01G079300 chr3D 87.234 235 25 5 1453 1686 378054431 378054201 1.700000e-66 263.0
12 TraesCS6A01G079300 chr7A 86.463 229 27 4 1451 1678 700429551 700429326 4.750000e-62 248.0
13 TraesCS6A01G079300 chr7A 86.026 229 28 4 1451 1678 581364713 581364488 2.210000e-60 243.0
14 TraesCS6A01G079300 chr7A 88.506 87 9 1 1873 1958 579256964 579256878 1.090000e-18 104.0
15 TraesCS6A01G079300 chr7A 85.714 91 13 0 1874 1964 678004832 678004742 1.820000e-16 97.1
16 TraesCS6A01G079300 chr7A 84.000 75 12 0 1873 1947 579012681 579012755 3.070000e-09 73.1
17 TraesCS6A01G079300 chr1B 86.017 236 19 9 1446 1678 323260137 323259913 7.950000e-60 241.0
18 TraesCS6A01G079300 chr1B 88.172 93 11 0 1872 1964 553899928 553900020 6.500000e-21 111.0
19 TraesCS6A01G079300 chr2B 94.643 112 6 0 1874 1985 202918131 202918020 8.180000e-40 174.0
20 TraesCS6A01G079300 chr2B 82.883 111 19 0 1873 1983 137438325 137438435 1.410000e-17 100.0
21 TraesCS6A01G079300 chrUn 79.147 211 43 1 1033 1242 100515613 100515823 6.410000e-31 145.0
22 TraesCS6A01G079300 chr5A 87.179 117 10 4 1687 1802 27786137 27786249 6.460000e-26 128.0
23 TraesCS6A01G079300 chr5A 82.609 92 14 2 2099 2189 11735405 11735315 1.830000e-11 80.5
24 TraesCS6A01G079300 chr5A 83.333 84 14 0 1874 1957 564983789 564983872 6.600000e-11 78.7
25 TraesCS6A01G079300 chr1A 91.026 78 7 0 1874 1951 494813088 494813165 3.030000e-19 106.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G079300 chr6A 48651077 48653304 2227 False 4115.0 4115 100.0000 1 2228 1 chr6A.!!$F1 2227
1 TraesCS6A01G079300 chr6D 37414189 37416040 1851 False 1252.5 1886 90.8955 1 1802 2 chr6D.!!$F1 1801
2 TraesCS6A01G079300 chr6B 87507286 87508093 807 False 1208.0 1208 93.7270 608 1414 1 chr6B.!!$F2 806

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
389 394 0.179189 GCGTCACACCAAAGCTATGC 60.179 55.0 0.0 0.0 0.0 3.14 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1827 1890 0.035739 ATGACGCCCCTTACGTTGTT 59.964 50.0 0.0 0.0 45.24 2.83 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
42 43 9.506018 ACCTCTCAAAATATTTTGGAATTTTGG 57.494 29.630 30.96 24.14 46.12 3.28
215 220 8.114331 TCGGTATCTACTGAACTTACTTTGAA 57.886 34.615 0.00 0.00 38.56 2.69
271 276 3.328382 TGTTGCTATAGCGTTTGGAGT 57.672 42.857 19.55 0.00 45.83 3.85
276 281 2.838736 CTATAGCGTTTGGAGTGGCAT 58.161 47.619 0.00 0.00 0.00 4.40
294 299 3.058501 GGCATAACGCTAAAGTTGTGTGT 60.059 43.478 8.05 0.00 42.63 3.72
300 305 5.744666 ACGCTAAAGTTGTGTGTGTTTAT 57.255 34.783 0.00 0.00 0.00 1.40
301 306 5.507077 ACGCTAAAGTTGTGTGTGTTTATG 58.493 37.500 0.00 0.00 0.00 1.90
302 307 4.378616 CGCTAAAGTTGTGTGTGTTTATGC 59.621 41.667 0.00 0.00 0.00 3.14
327 332 7.643764 GCTAAATGAATTTTGTCGCTAATAGCA 59.356 33.333 13.15 0.00 42.58 3.49
343 348 6.073548 GCTAATAGCAGACAATAGCGTGATTT 60.074 38.462 7.49 0.00 41.89 2.17
365 370 1.923227 GCGCTAAACTTGGGCCTCAC 61.923 60.000 4.53 0.00 37.40 3.51
366 371 0.321653 CGCTAAACTTGGGCCTCACT 60.322 55.000 4.53 0.00 0.00 3.41
371 376 1.911057 AACTTGGGCCTCACTTTAGC 58.089 50.000 4.53 0.00 0.00 3.09
379 384 1.429463 CCTCACTTTAGCGTCACACC 58.571 55.000 0.00 0.00 0.00 4.16
389 394 0.179189 GCGTCACACCAAAGCTATGC 60.179 55.000 0.00 0.00 0.00 3.14
408 413 5.637006 ATGCCAAGCGTTTCTTTGTTATA 57.363 34.783 0.00 0.00 31.27 0.98
467 472 4.534168 CATGCTGCTATGCTTGATTGTAC 58.466 43.478 0.00 0.00 39.50 2.90
468 473 3.608796 TGCTGCTATGCTTGATTGTACA 58.391 40.909 0.00 0.00 0.00 2.90
469 474 3.624410 TGCTGCTATGCTTGATTGTACAG 59.376 43.478 0.00 0.00 0.00 2.74
470 475 3.624861 GCTGCTATGCTTGATTGTACAGT 59.375 43.478 0.00 0.00 0.00 3.55
508 520 4.680171 ACGCTAAATGTGGCTTAACTTC 57.320 40.909 0.00 0.00 0.00 3.01
512 564 3.942130 AAATGTGGCTTAACTTCTGGC 57.058 42.857 0.00 0.00 0.00 4.85
594 646 9.967451 TGATCAAAAGGTAATACTTTGGTATCA 57.033 29.630 0.00 5.78 40.36 2.15
782 835 9.099454 CCATACCTTTACTCAAGTCTTATTGAC 57.901 37.037 0.00 0.00 45.67 3.18
783 836 9.099454 CATACCTTTACTCAAGTCTTATTGACC 57.901 37.037 0.00 0.00 46.46 4.02
784 837 7.074653 ACCTTTACTCAAGTCTTATTGACCA 57.925 36.000 0.00 0.00 46.46 4.02
785 838 7.514721 ACCTTTACTCAAGTCTTATTGACCAA 58.485 34.615 0.00 0.00 46.46 3.67
787 840 8.290325 CCTTTACTCAAGTCTTATTGACCAAAC 58.710 37.037 0.00 0.00 46.46 2.93
788 841 8.740123 TTTACTCAAGTCTTATTGACCAAACA 57.260 30.769 0.00 0.00 46.46 2.83
789 842 6.867662 ACTCAAGTCTTATTGACCAAACAG 57.132 37.500 0.00 0.00 46.46 3.16
790 843 5.765182 ACTCAAGTCTTATTGACCAAACAGG 59.235 40.000 0.00 0.00 46.46 4.00
791 844 4.518970 TCAAGTCTTATTGACCAAACAGGC 59.481 41.667 0.00 0.00 46.46 4.85
795 852 5.362430 AGTCTTATTGACCAAACAGGCAAAA 59.638 36.000 0.00 0.00 46.46 2.44
799 856 3.518634 TGACCAAACAGGCAAAAGTTC 57.481 42.857 0.00 0.00 43.14 3.01
813 870 5.121768 GGCAAAAGTTCAAATCTAGCTACGA 59.878 40.000 0.00 0.00 0.00 3.43
930 988 7.040478 GCTTGCAATCCATAAATACAGGTATGA 60.040 37.037 0.00 0.00 30.61 2.15
1021 1079 1.066430 TGAGCGGAGGTAACAATGGTC 60.066 52.381 0.00 0.00 39.88 4.02
1106 1164 4.736896 GGACAGGCCGGACGTCAC 62.737 72.222 26.29 15.72 0.00 3.67
1193 1251 4.717629 CGACTCGCAACAGCCCGA 62.718 66.667 0.00 0.00 0.00 5.14
1194 1252 2.357034 GACTCGCAACAGCCCGAA 60.357 61.111 0.00 0.00 32.56 4.30
1230 1288 3.164269 CCCATGGTCGGCTAGCCT 61.164 66.667 30.55 9.58 0.00 4.58
1328 1387 2.549992 GCCCTCATGCATGGATACGTTA 60.550 50.000 25.97 3.58 42.51 3.18
1333 1392 1.948104 TGCATGGATACGTTACCTGC 58.052 50.000 18.24 18.24 42.51 4.85
1404 1463 9.739276 AGGTGATTGTTCTGTAAATTCTATGAA 57.261 29.630 0.00 0.00 0.00 2.57
1524 1583 2.148768 AGCATGCCATATCATCACACG 58.851 47.619 15.66 0.00 0.00 4.49
1540 1599 3.563390 TCACACGACATGCATGAGAAAAA 59.437 39.130 32.75 9.59 0.00 1.94
1541 1600 4.216042 TCACACGACATGCATGAGAAAAAT 59.784 37.500 32.75 8.66 0.00 1.82
1553 1612 1.908619 GAGAAAAATGCCCACCCCAAT 59.091 47.619 0.00 0.00 0.00 3.16
1569 1628 6.239973 CCACCCCAATTATCATATGTCTCTCA 60.240 42.308 1.90 0.00 0.00 3.27
1596 1657 4.338964 TGCAAGCATACCACTTCATTATGG 59.661 41.667 0.00 0.00 42.13 2.74
1598 1659 4.443978 AGCATACCACTTCATTATGGCT 57.556 40.909 0.00 0.00 39.84 4.75
1638 1700 9.743581 ATCCATCTCAACATGCAAATATACATA 57.256 29.630 0.00 0.00 0.00 2.29
1730 1792 4.928601 ACATGCAAGCATACAACATCATC 58.071 39.130 7.29 0.00 34.91 2.92
1731 1793 4.643334 ACATGCAAGCATACAACATCATCT 59.357 37.500 7.29 0.00 34.91 2.90
1734 1796 4.885325 TGCAAGCATACAACATCATCTCAT 59.115 37.500 0.00 0.00 0.00 2.90
1755 1817 1.927487 ACATGCATGAGAAAAGCCCA 58.073 45.000 32.75 0.00 0.00 5.36
1756 1818 1.547372 ACATGCATGAGAAAAGCCCAC 59.453 47.619 32.75 0.00 0.00 4.61
1777 1840 6.019748 CCACCCCTACTATCATATGTCTCTT 58.980 44.000 1.90 0.00 0.00 2.85
1782 1845 9.090103 CCCCTACTATCATATGTCTCTTAACAA 57.910 37.037 1.90 0.00 31.81 2.83
1802 1865 3.616935 CAAGCATGCCACTTCATCG 57.383 52.632 15.66 0.00 0.00 3.84
1803 1866 0.099968 CAAGCATGCCACTTCATCGG 59.900 55.000 15.66 0.00 0.00 4.18
1804 1867 0.035152 AAGCATGCCACTTCATCGGA 60.035 50.000 15.66 0.00 0.00 4.55
1805 1868 0.182061 AGCATGCCACTTCATCGGAT 59.818 50.000 15.66 0.00 0.00 4.18
1806 1869 1.027357 GCATGCCACTTCATCGGATT 58.973 50.000 6.36 0.00 0.00 3.01
1807 1870 2.158769 AGCATGCCACTTCATCGGATTA 60.159 45.455 15.66 0.00 0.00 1.75
1808 1871 2.816087 GCATGCCACTTCATCGGATTAT 59.184 45.455 6.36 0.00 0.00 1.28
1809 1872 3.365666 GCATGCCACTTCATCGGATTATG 60.366 47.826 6.36 0.00 0.00 1.90
1810 1873 3.558931 TGCCACTTCATCGGATTATGT 57.441 42.857 0.00 0.00 0.00 2.29
1811 1874 3.884895 TGCCACTTCATCGGATTATGTT 58.115 40.909 0.00 0.00 0.00 2.71
1812 1875 3.627123 TGCCACTTCATCGGATTATGTTG 59.373 43.478 0.00 0.00 0.00 3.33
1813 1876 3.548818 GCCACTTCATCGGATTATGTTGC 60.549 47.826 0.00 0.00 0.00 4.17
1814 1877 3.303329 CCACTTCATCGGATTATGTTGCG 60.303 47.826 0.00 0.00 0.00 4.85
1815 1878 3.555547 CACTTCATCGGATTATGTTGCGA 59.444 43.478 0.00 0.00 43.64 5.10
1816 1879 4.033932 CACTTCATCGGATTATGTTGCGAA 59.966 41.667 0.00 0.00 42.75 4.70
1817 1880 4.634004 ACTTCATCGGATTATGTTGCGAAA 59.366 37.500 0.00 0.00 42.75 3.46
1818 1881 5.296780 ACTTCATCGGATTATGTTGCGAAAT 59.703 36.000 0.00 0.00 42.75 2.17
1819 1882 6.481976 ACTTCATCGGATTATGTTGCGAAATA 59.518 34.615 0.00 0.00 42.75 1.40
1820 1883 7.173218 ACTTCATCGGATTATGTTGCGAAATAT 59.827 33.333 0.00 0.00 42.75 1.28
1821 1884 7.060600 TCATCGGATTATGTTGCGAAATATC 57.939 36.000 0.00 0.00 42.75 1.63
1822 1885 5.856126 TCGGATTATGTTGCGAAATATCC 57.144 39.130 0.00 0.00 36.49 2.59
1823 1886 4.693566 TCGGATTATGTTGCGAAATATCCC 59.306 41.667 0.00 0.00 36.49 3.85
1824 1887 4.142687 CGGATTATGTTGCGAAATATCCCC 60.143 45.833 0.00 0.00 31.44 4.81
1825 1888 4.142687 GGATTATGTTGCGAAATATCCCCG 60.143 45.833 0.00 0.00 0.00 5.73
1832 1895 2.468532 CGAAATATCCCCGCAACAAC 57.531 50.000 0.00 0.00 0.00 3.32
1833 1896 1.267832 CGAAATATCCCCGCAACAACG 60.268 52.381 0.00 0.00 0.00 4.10
1834 1897 1.741145 GAAATATCCCCGCAACAACGT 59.259 47.619 0.00 0.00 0.00 3.99
1835 1898 2.695127 AATATCCCCGCAACAACGTA 57.305 45.000 0.00 0.00 0.00 3.57
1836 1899 2.695127 ATATCCCCGCAACAACGTAA 57.305 45.000 0.00 0.00 0.00 3.18
1838 1901 0.675522 ATCCCCGCAACAACGTAAGG 60.676 55.000 0.00 0.00 46.39 2.69
1839 1902 2.329614 CCCCGCAACAACGTAAGGG 61.330 63.158 0.00 0.00 46.39 3.95
1840 1903 2.329614 CCCGCAACAACGTAAGGGG 61.330 63.158 0.00 0.00 46.39 4.79
1841 1904 2.559330 CGCAACAACGTAAGGGGC 59.441 61.111 0.00 0.00 46.39 5.80
1842 1905 2.559330 GCAACAACGTAAGGGGCG 59.441 61.111 0.00 0.00 46.39 6.13
1843 1906 2.255881 GCAACAACGTAAGGGGCGT 61.256 57.895 0.00 0.00 45.07 5.68
1844 1907 1.864176 CAACAACGTAAGGGGCGTC 59.136 57.895 0.00 0.00 42.10 5.19
1845 1908 0.881159 CAACAACGTAAGGGGCGTCA 60.881 55.000 0.00 0.00 42.10 4.35
1846 1909 0.035739 AACAACGTAAGGGGCGTCAT 59.964 50.000 0.00 0.00 42.10 3.06
1847 1910 0.390735 ACAACGTAAGGGGCGTCATC 60.391 55.000 0.00 0.00 42.10 2.92
1848 1911 0.108329 CAACGTAAGGGGCGTCATCT 60.108 55.000 0.00 0.00 42.10 2.90
1849 1912 1.135527 CAACGTAAGGGGCGTCATCTA 59.864 52.381 0.00 0.00 42.10 1.98
1850 1913 1.030457 ACGTAAGGGGCGTCATCTAG 58.970 55.000 0.00 0.00 46.39 2.43
1851 1914 1.030457 CGTAAGGGGCGTCATCTAGT 58.970 55.000 0.00 0.00 0.00 2.57
1852 1915 2.224606 CGTAAGGGGCGTCATCTAGTA 58.775 52.381 0.00 0.00 0.00 1.82
1853 1916 2.818432 CGTAAGGGGCGTCATCTAGTAT 59.182 50.000 0.00 0.00 0.00 2.12
1854 1917 4.005650 CGTAAGGGGCGTCATCTAGTATA 58.994 47.826 0.00 0.00 0.00 1.47
1855 1918 4.142730 CGTAAGGGGCGTCATCTAGTATAC 60.143 50.000 0.00 0.00 0.00 1.47
1856 1919 2.805194 AGGGGCGTCATCTAGTATACC 58.195 52.381 0.00 0.00 0.00 2.73
1857 1920 2.379226 AGGGGCGTCATCTAGTATACCT 59.621 50.000 0.00 0.00 0.00 3.08
1858 1921 3.590630 AGGGGCGTCATCTAGTATACCTA 59.409 47.826 0.00 0.00 0.00 3.08
1859 1922 4.043812 AGGGGCGTCATCTAGTATACCTAA 59.956 45.833 0.00 0.00 0.00 2.69
1860 1923 4.398673 GGGGCGTCATCTAGTATACCTAAG 59.601 50.000 0.00 0.00 0.00 2.18
1861 1924 5.008980 GGGCGTCATCTAGTATACCTAAGT 58.991 45.833 0.00 0.00 0.00 2.24
1862 1925 6.176183 GGGCGTCATCTAGTATACCTAAGTA 58.824 44.000 0.00 0.00 0.00 2.24
1863 1926 6.656693 GGGCGTCATCTAGTATACCTAAGTAA 59.343 42.308 0.00 0.00 30.59 2.24
1864 1927 7.361628 GGGCGTCATCTAGTATACCTAAGTAAC 60.362 44.444 0.00 0.00 30.59 2.50
1865 1928 7.390162 GGCGTCATCTAGTATACCTAAGTAACT 59.610 40.741 0.00 0.00 30.59 2.24
1866 1929 8.782144 GCGTCATCTAGTATACCTAAGTAACTT 58.218 37.037 0.00 0.00 30.59 2.66
1880 1943 8.529476 ACCTAAGTAACTTATCAACACTAGTGG 58.471 37.037 26.12 10.11 34.19 4.00
1881 1944 8.529476 CCTAAGTAACTTATCAACACTAGTGGT 58.471 37.037 26.12 18.46 34.19 4.16
1882 1945 9.924650 CTAAGTAACTTATCAACACTAGTGGTT 57.075 33.333 26.12 18.91 34.19 3.67
1883 1946 8.603242 AAGTAACTTATCAACACTAGTGGTTG 57.397 34.615 26.12 23.67 45.34 3.77
1884 1947 7.159372 AGTAACTTATCAACACTAGTGGTTGG 58.841 38.462 26.12 9.79 44.38 3.77
1885 1948 4.906618 ACTTATCAACACTAGTGGTTGGG 58.093 43.478 26.12 9.04 44.38 4.12
1886 1949 2.879103 ATCAACACTAGTGGTTGGGG 57.121 50.000 26.12 8.67 44.38 4.96
1887 1950 0.109723 TCAACACTAGTGGTTGGGGC 59.890 55.000 26.12 0.00 44.38 5.80
1888 1951 1.072505 AACACTAGTGGTTGGGGCG 59.927 57.895 26.12 0.00 34.19 6.13
1889 1952 2.746277 CACTAGTGGTTGGGGCGC 60.746 66.667 15.49 0.00 0.00 6.53
1890 1953 4.388499 ACTAGTGGTTGGGGCGCG 62.388 66.667 0.00 0.00 0.00 6.86
1915 1978 4.441695 CGCGCTGCCTGAGAGGAA 62.442 66.667 5.56 0.00 37.67 3.36
1916 1979 2.188994 GCGCTGCCTGAGAGGAAT 59.811 61.111 0.00 0.00 37.67 3.01
1917 1980 1.451028 GCGCTGCCTGAGAGGAATT 60.451 57.895 0.00 0.00 37.67 2.17
1918 1981 1.028868 GCGCTGCCTGAGAGGAATTT 61.029 55.000 0.00 0.00 37.67 1.82
1919 1982 1.012841 CGCTGCCTGAGAGGAATTTC 58.987 55.000 0.00 0.00 37.67 2.17
1920 1983 1.012841 GCTGCCTGAGAGGAATTTCG 58.987 55.000 0.00 0.00 37.67 3.46
1921 1984 1.661341 CTGCCTGAGAGGAATTTCGG 58.339 55.000 0.00 0.00 37.67 4.30
1922 1985 0.392998 TGCCTGAGAGGAATTTCGGC 60.393 55.000 0.00 4.38 37.67 5.54
1923 1986 1.432270 GCCTGAGAGGAATTTCGGCG 61.432 60.000 0.00 0.00 37.67 6.46
1924 1987 0.811616 CCTGAGAGGAATTTCGGCGG 60.812 60.000 7.21 0.00 37.67 6.13
1925 1988 0.108138 CTGAGAGGAATTTCGGCGGT 60.108 55.000 7.21 0.00 0.00 5.68
1926 1989 0.391130 TGAGAGGAATTTCGGCGGTG 60.391 55.000 7.21 0.00 0.00 4.94
1927 1990 1.706287 GAGAGGAATTTCGGCGGTGC 61.706 60.000 7.21 0.00 0.00 5.01
1928 1991 2.750237 AGGAATTTCGGCGGTGCC 60.750 61.111 7.21 1.48 46.75 5.01
1942 2005 4.947147 TGCCAGGTTGGGTGCGTC 62.947 66.667 0.00 0.00 38.19 5.19
1952 2015 4.475527 GGTGCGTCCCTTTCACTT 57.524 55.556 0.00 0.00 0.00 3.16
1953 2016 2.715536 GGTGCGTCCCTTTCACTTT 58.284 52.632 0.00 0.00 0.00 2.66
1954 2017 0.591659 GGTGCGTCCCTTTCACTTTC 59.408 55.000 0.00 0.00 0.00 2.62
1955 2018 0.591659 GTGCGTCCCTTTCACTTTCC 59.408 55.000 0.00 0.00 0.00 3.13
1956 2019 0.472471 TGCGTCCCTTTCACTTTCCT 59.528 50.000 0.00 0.00 0.00 3.36
1957 2020 0.875059 GCGTCCCTTTCACTTTCCTG 59.125 55.000 0.00 0.00 0.00 3.86
1958 2021 1.523758 CGTCCCTTTCACTTTCCTGG 58.476 55.000 0.00 0.00 0.00 4.45
1959 2022 1.882352 CGTCCCTTTCACTTTCCTGGG 60.882 57.143 0.00 0.00 36.14 4.45
1960 2023 1.145119 GTCCCTTTCACTTTCCTGGGT 59.855 52.381 0.00 0.00 36.23 4.51
1961 2024 1.144913 TCCCTTTCACTTTCCTGGGTG 59.855 52.381 0.00 0.00 36.23 4.61
1962 2025 1.133482 CCCTTTCACTTTCCTGGGTGT 60.133 52.381 0.00 0.00 35.26 4.16
1963 2026 2.107552 CCCTTTCACTTTCCTGGGTGTA 59.892 50.000 0.00 0.00 35.26 2.90
1964 2027 3.146847 CCTTTCACTTTCCTGGGTGTAC 58.853 50.000 0.00 0.00 35.26 2.90
1965 2028 3.181443 CCTTTCACTTTCCTGGGTGTACT 60.181 47.826 0.00 0.00 35.26 2.73
1966 2029 3.485463 TTCACTTTCCTGGGTGTACTG 57.515 47.619 0.00 0.00 35.26 2.74
1967 2030 1.071699 TCACTTTCCTGGGTGTACTGC 59.928 52.381 0.00 0.00 35.26 4.40
1968 2031 1.136828 ACTTTCCTGGGTGTACTGCA 58.863 50.000 0.00 0.00 0.00 4.41
1969 2032 1.202770 ACTTTCCTGGGTGTACTGCAC 60.203 52.381 0.00 0.00 46.97 4.57
1980 2043 3.429085 GTGTACTGCACAATGCTATTGC 58.571 45.455 2.02 0.00 46.91 3.56
1981 2044 3.080319 TGTACTGCACAATGCTATTGCA 58.920 40.909 3.84 3.84 45.31 4.08
2018 2081 4.952262 TCAGCATGAAAGTAGTGCAATC 57.048 40.909 0.00 0.00 45.97 2.67
2019 2082 4.582869 TCAGCATGAAAGTAGTGCAATCT 58.417 39.130 0.00 0.00 45.97 2.40
2020 2083 4.393990 TCAGCATGAAAGTAGTGCAATCTG 59.606 41.667 0.00 0.00 45.97 2.90
2021 2084 4.155462 CAGCATGAAAGTAGTGCAATCTGT 59.845 41.667 0.00 0.00 39.69 3.41
2022 2085 4.394300 AGCATGAAAGTAGTGCAATCTGTC 59.606 41.667 0.00 0.00 41.19 3.51
2023 2086 4.726021 GCATGAAAGTAGTGCAATCTGTCG 60.726 45.833 0.00 0.00 38.68 4.35
2024 2087 4.251543 TGAAAGTAGTGCAATCTGTCGA 57.748 40.909 0.00 0.00 0.00 4.20
2025 2088 4.820897 TGAAAGTAGTGCAATCTGTCGAT 58.179 39.130 0.00 0.00 0.00 3.59
2026 2089 4.627035 TGAAAGTAGTGCAATCTGTCGATG 59.373 41.667 0.00 0.00 0.00 3.84
2027 2090 3.170791 AGTAGTGCAATCTGTCGATGG 57.829 47.619 0.00 0.00 0.00 3.51
2028 2091 2.760650 AGTAGTGCAATCTGTCGATGGA 59.239 45.455 0.00 0.00 0.00 3.41
2029 2092 2.996249 AGTGCAATCTGTCGATGGAT 57.004 45.000 0.00 0.00 0.00 3.41
2030 2093 2.831333 AGTGCAATCTGTCGATGGATC 58.169 47.619 0.00 0.00 0.00 3.36
2031 2094 2.169144 AGTGCAATCTGTCGATGGATCA 59.831 45.455 0.00 0.00 0.00 2.92
2032 2095 3.136763 GTGCAATCTGTCGATGGATCAT 58.863 45.455 0.00 0.00 0.00 2.45
2033 2096 3.186001 GTGCAATCTGTCGATGGATCATC 59.814 47.826 0.00 0.00 37.50 2.92
2034 2097 2.740981 GCAATCTGTCGATGGATCATCC 59.259 50.000 0.00 0.00 37.57 3.51
2035 2098 3.556633 GCAATCTGTCGATGGATCATCCT 60.557 47.826 4.96 0.00 37.57 3.24
2036 2099 4.639334 CAATCTGTCGATGGATCATCCTT 58.361 43.478 4.96 0.00 37.57 3.36
2037 2100 5.787380 CAATCTGTCGATGGATCATCCTTA 58.213 41.667 4.96 0.00 37.57 2.69
2038 2101 5.657826 ATCTGTCGATGGATCATCCTTAG 57.342 43.478 4.96 0.00 37.57 2.18
2039 2102 3.829026 TCTGTCGATGGATCATCCTTAGG 59.171 47.826 4.96 0.00 37.57 2.69
2040 2103 3.829026 CTGTCGATGGATCATCCTTAGGA 59.171 47.826 2.37 2.37 37.57 2.94
2041 2104 3.829026 TGTCGATGGATCATCCTTAGGAG 59.171 47.826 7.19 0.00 37.57 3.69
2042 2105 4.082845 GTCGATGGATCATCCTTAGGAGA 58.917 47.826 7.19 5.07 37.57 3.71
2043 2106 4.524714 GTCGATGGATCATCCTTAGGAGAA 59.475 45.833 7.19 0.00 37.57 2.87
2044 2107 5.011125 GTCGATGGATCATCCTTAGGAGAAA 59.989 44.000 7.19 0.00 37.57 2.52
2045 2108 5.602561 TCGATGGATCATCCTTAGGAGAAAA 59.397 40.000 7.19 0.00 37.57 2.29
2046 2109 5.931146 CGATGGATCATCCTTAGGAGAAAAG 59.069 44.000 7.19 0.00 37.57 2.27
2047 2110 6.239430 CGATGGATCATCCTTAGGAGAAAAGA 60.239 42.308 7.19 0.20 37.57 2.52
2048 2111 6.240549 TGGATCATCCTTAGGAGAAAAGAC 57.759 41.667 7.19 0.00 37.46 3.01
2049 2112 5.726308 TGGATCATCCTTAGGAGAAAAGACA 59.274 40.000 7.19 0.00 37.46 3.41
2050 2113 6.215431 TGGATCATCCTTAGGAGAAAAGACAA 59.785 38.462 7.19 0.00 37.46 3.18
2051 2114 7.092264 TGGATCATCCTTAGGAGAAAAGACAAT 60.092 37.037 7.19 0.00 37.46 2.71
2052 2115 7.228308 GGATCATCCTTAGGAGAAAAGACAATG 59.772 40.741 7.19 0.00 34.05 2.82
2053 2116 7.257790 TCATCCTTAGGAGAAAAGACAATGA 57.742 36.000 7.19 0.00 34.05 2.57
2054 2117 7.106239 TCATCCTTAGGAGAAAAGACAATGAC 58.894 38.462 7.19 0.00 34.05 3.06
2055 2118 6.433847 TCCTTAGGAGAAAAGACAATGACA 57.566 37.500 0.00 0.00 0.00 3.58
2056 2119 7.020827 TCCTTAGGAGAAAAGACAATGACAT 57.979 36.000 0.00 0.00 0.00 3.06
2057 2120 7.106239 TCCTTAGGAGAAAAGACAATGACATC 58.894 38.462 0.00 0.00 0.00 3.06
2058 2121 6.036517 CCTTAGGAGAAAAGACAATGACATCG 59.963 42.308 0.00 0.00 0.00 3.84
2059 2122 3.686726 AGGAGAAAAGACAATGACATCGC 59.313 43.478 0.00 0.00 0.00 4.58
2060 2123 3.181506 GGAGAAAAGACAATGACATCGCC 60.182 47.826 0.00 0.00 0.00 5.54
2061 2124 3.411446 AGAAAAGACAATGACATCGCCA 58.589 40.909 0.00 0.00 0.00 5.69
2062 2125 3.820467 AGAAAAGACAATGACATCGCCAA 59.180 39.130 0.00 0.00 0.00 4.52
2063 2126 3.559238 AAAGACAATGACATCGCCAAC 57.441 42.857 0.00 0.00 0.00 3.77
2064 2127 1.078709 AGACAATGACATCGCCAACG 58.921 50.000 0.00 0.00 42.01 4.10
2065 2128 0.796312 GACAATGACATCGCCAACGT 59.204 50.000 0.00 0.00 41.18 3.99
2066 2129 0.516877 ACAATGACATCGCCAACGTG 59.483 50.000 0.00 0.00 41.18 4.49
2067 2130 0.516877 CAATGACATCGCCAACGTGT 59.483 50.000 0.00 0.00 41.18 4.49
2068 2131 0.516877 AATGACATCGCCAACGTGTG 59.483 50.000 0.00 0.00 41.18 3.82
2089 2152 4.463879 CCACCTGCCGCCTGAGAG 62.464 72.222 0.00 0.00 0.00 3.20
2090 2153 4.463879 CACCTGCCGCCTGAGAGG 62.464 72.222 0.00 0.00 38.80 3.69
2091 2154 4.704103 ACCTGCCGCCTGAGAGGA 62.704 66.667 0.85 0.00 37.67 3.71
2092 2155 3.393970 CCTGCCGCCTGAGAGGAA 61.394 66.667 0.00 0.00 37.67 3.36
2093 2156 2.186384 CTGCCGCCTGAGAGGAAG 59.814 66.667 0.00 0.00 37.67 3.46
2094 2157 2.604686 TGCCGCCTGAGAGGAAGT 60.605 61.111 0.00 0.00 37.67 3.01
2095 2158 2.177594 CTGCCGCCTGAGAGGAAGTT 62.178 60.000 0.00 0.00 37.67 2.66
2096 2159 1.003233 GCCGCCTGAGAGGAAGTTT 60.003 57.895 0.00 0.00 37.67 2.66
2097 2160 1.021920 GCCGCCTGAGAGGAAGTTTC 61.022 60.000 0.00 0.00 37.67 2.78
2098 2161 0.610687 CCGCCTGAGAGGAAGTTTCT 59.389 55.000 0.00 0.00 37.67 2.52
2099 2162 1.674221 CCGCCTGAGAGGAAGTTTCTG 60.674 57.143 0.00 0.00 37.67 3.02
2100 2163 1.447945 GCCTGAGAGGAAGTTTCTGC 58.552 55.000 0.00 0.00 37.67 4.26
2101 2164 1.719600 CCTGAGAGGAAGTTTCTGCG 58.280 55.000 0.00 0.00 37.67 5.18
2102 2165 1.674221 CCTGAGAGGAAGTTTCTGCGG 60.674 57.143 0.00 0.00 37.67 5.69
2103 2166 1.001406 CTGAGAGGAAGTTTCTGCGGT 59.999 52.381 0.00 0.00 0.00 5.68
2104 2167 1.270305 TGAGAGGAAGTTTCTGCGGTG 60.270 52.381 0.00 0.00 0.00 4.94
2105 2168 0.603975 AGAGGAAGTTTCTGCGGTGC 60.604 55.000 0.00 0.00 0.00 5.01
2106 2169 1.578206 GAGGAAGTTTCTGCGGTGCC 61.578 60.000 0.00 0.00 0.00 5.01
2107 2170 1.896660 GGAAGTTTCTGCGGTGCCA 60.897 57.895 0.00 0.00 0.00 4.92
2108 2171 1.576421 GAAGTTTCTGCGGTGCCAG 59.424 57.895 0.00 0.00 0.00 4.85
2109 2172 1.856265 GAAGTTTCTGCGGTGCCAGG 61.856 60.000 0.00 0.00 33.64 4.45
2110 2173 2.594592 GTTTCTGCGGTGCCAGGT 60.595 61.111 0.00 0.00 33.64 4.00
2111 2174 1.302192 GTTTCTGCGGTGCCAGGTA 60.302 57.895 0.00 0.00 33.64 3.08
2112 2175 1.003839 TTTCTGCGGTGCCAGGTAG 60.004 57.895 0.00 0.00 33.64 3.18
2113 2176 2.463589 TTTCTGCGGTGCCAGGTAGG 62.464 60.000 0.00 0.00 41.84 3.18
2114 2177 4.473520 CTGCGGTGCCAGGTAGGG 62.474 72.222 0.00 0.00 38.09 3.53
2116 2179 4.778143 GCGGTGCCAGGTAGGGTG 62.778 72.222 0.00 0.00 38.09 4.61
2117 2180 4.096003 CGGTGCCAGGTAGGGTGG 62.096 72.222 0.00 0.00 38.09 4.61
2130 2193 3.365265 GGTGGCGCCCTTTCAGTG 61.365 66.667 26.77 0.00 0.00 3.66
2131 2194 2.281484 GTGGCGCCCTTTCAGTGA 60.281 61.111 26.77 0.00 0.00 3.41
2132 2195 1.896660 GTGGCGCCCTTTCAGTGAA 60.897 57.895 26.77 0.08 0.00 3.18
2133 2196 1.074775 TGGCGCCCTTTCAGTGAAT 59.925 52.632 26.77 0.00 0.00 2.57
2134 2197 0.539438 TGGCGCCCTTTCAGTGAATT 60.539 50.000 26.77 0.00 0.00 2.17
2135 2198 0.603065 GGCGCCCTTTCAGTGAATTT 59.397 50.000 18.11 0.00 0.00 1.82
2136 2199 1.669795 GGCGCCCTTTCAGTGAATTTG 60.670 52.381 18.11 0.57 0.00 2.32
2137 2200 1.269448 GCGCCCTTTCAGTGAATTTGA 59.731 47.619 6.36 0.00 0.00 2.69
2138 2201 2.669391 GCGCCCTTTCAGTGAATTTGAG 60.669 50.000 6.36 0.72 0.00 3.02
2139 2202 2.669391 CGCCCTTTCAGTGAATTTGAGC 60.669 50.000 6.36 5.28 0.00 4.26
2140 2203 2.560105 GCCCTTTCAGTGAATTTGAGCT 59.440 45.455 6.36 0.00 0.00 4.09
2141 2204 3.366781 GCCCTTTCAGTGAATTTGAGCTC 60.367 47.826 6.82 6.82 0.00 4.09
2142 2205 4.077822 CCCTTTCAGTGAATTTGAGCTCT 58.922 43.478 16.19 0.00 0.00 4.09
2143 2206 4.082895 CCCTTTCAGTGAATTTGAGCTCTG 60.083 45.833 16.19 1.93 0.00 3.35
2144 2207 4.758674 CCTTTCAGTGAATTTGAGCTCTGA 59.241 41.667 16.19 4.56 34.11 3.27
2145 2208 5.415077 CCTTTCAGTGAATTTGAGCTCTGAT 59.585 40.000 16.19 5.93 35.40 2.90
2146 2209 6.072064 CCTTTCAGTGAATTTGAGCTCTGATT 60.072 38.462 16.19 14.21 35.40 2.57
2147 2210 5.874895 TCAGTGAATTTGAGCTCTGATTG 57.125 39.130 16.19 4.48 31.84 2.67
2148 2211 5.554070 TCAGTGAATTTGAGCTCTGATTGA 58.446 37.500 16.19 6.49 31.84 2.57
2149 2212 6.178324 TCAGTGAATTTGAGCTCTGATTGAT 58.822 36.000 16.19 1.23 31.84 2.57
2150 2213 7.333323 TCAGTGAATTTGAGCTCTGATTGATA 58.667 34.615 16.19 2.02 31.84 2.15
2151 2214 7.825761 TCAGTGAATTTGAGCTCTGATTGATAA 59.174 33.333 16.19 0.00 31.84 1.75
2152 2215 8.456471 CAGTGAATTTGAGCTCTGATTGATAAA 58.544 33.333 16.19 4.68 0.00 1.40
2153 2216 9.017509 AGTGAATTTGAGCTCTGATTGATAAAA 57.982 29.630 16.19 3.93 0.00 1.52
2154 2217 9.798994 GTGAATTTGAGCTCTGATTGATAAAAT 57.201 29.630 16.19 6.19 0.00 1.82
2155 2218 9.797556 TGAATTTGAGCTCTGATTGATAAAATG 57.202 29.630 16.19 0.00 0.00 2.32
2156 2219 8.644318 AATTTGAGCTCTGATTGATAAAATGC 57.356 30.769 16.19 0.00 0.00 3.56
2157 2220 6.762702 TTGAGCTCTGATTGATAAAATGCA 57.237 33.333 16.19 0.00 0.00 3.96
2158 2221 6.954487 TGAGCTCTGATTGATAAAATGCAT 57.046 33.333 16.19 0.00 0.00 3.96
2159 2222 6.735130 TGAGCTCTGATTGATAAAATGCATG 58.265 36.000 16.19 0.00 0.00 4.06
2160 2223 5.529791 AGCTCTGATTGATAAAATGCATGC 58.470 37.500 11.82 11.82 0.00 4.06
2161 2224 5.068591 AGCTCTGATTGATAAAATGCATGCA 59.931 36.000 25.04 25.04 0.00 3.96
2162 2225 5.926542 GCTCTGATTGATAAAATGCATGCAT 59.073 36.000 27.46 27.46 38.46 3.96
2163 2226 6.128822 GCTCTGATTGATAAAATGCATGCATG 60.129 38.462 32.79 22.70 36.68 4.06
2164 2227 6.811954 TCTGATTGATAAAATGCATGCATGT 58.188 32.000 32.79 25.73 36.68 3.21
2165 2228 7.942990 TCTGATTGATAAAATGCATGCATGTA 58.057 30.769 32.79 25.79 36.68 2.29
2166 2229 7.863877 TCTGATTGATAAAATGCATGCATGTAC 59.136 33.333 32.79 20.93 36.68 2.90
2167 2230 7.490000 TGATTGATAAAATGCATGCATGTACA 58.510 30.769 32.79 22.97 36.68 2.90
2168 2231 7.980099 TGATTGATAAAATGCATGCATGTACAA 59.020 29.630 32.79 28.31 36.68 2.41
2169 2232 7.522901 TTGATAAAATGCATGCATGTACAAC 57.477 32.000 32.79 21.11 36.68 3.32
2170 2233 6.865411 TGATAAAATGCATGCATGTACAACT 58.135 32.000 32.79 14.96 36.68 3.16
2171 2234 6.752815 TGATAAAATGCATGCATGTACAACTG 59.247 34.615 32.79 1.63 36.68 3.16
2172 2235 4.787260 AAATGCATGCATGTACAACTGA 57.213 36.364 32.79 0.55 36.68 3.41
2173 2236 4.994907 AATGCATGCATGTACAACTGAT 57.005 36.364 32.79 11.05 36.68 2.90
2174 2237 3.768468 TGCATGCATGTACAACTGATG 57.232 42.857 26.79 0.00 0.00 3.07
2175 2238 2.159352 TGCATGCATGTACAACTGATGC 60.159 45.455 26.79 18.46 42.38 3.91
2180 2243 5.233957 TGCATGTACAACTGATGCATTAC 57.766 39.130 15.31 0.00 45.76 1.89
2181 2244 4.699257 TGCATGTACAACTGATGCATTACA 59.301 37.500 15.31 4.81 45.76 2.41
2182 2245 5.357596 TGCATGTACAACTGATGCATTACAT 59.642 36.000 15.31 11.84 45.76 2.29
2183 2246 6.541641 TGCATGTACAACTGATGCATTACATA 59.458 34.615 15.31 3.37 45.76 2.29
2184 2247 6.852853 GCATGTACAACTGATGCATTACATAC 59.147 38.462 15.60 9.26 41.78 2.39
2185 2248 6.582437 TGTACAACTGATGCATTACATACG 57.418 37.500 0.00 0.00 39.84 3.06
2186 2249 6.334202 TGTACAACTGATGCATTACATACGA 58.666 36.000 0.00 0.00 39.84 3.43
2187 2250 6.983890 TGTACAACTGATGCATTACATACGAT 59.016 34.615 0.00 0.00 39.84 3.73
2188 2251 6.291067 ACAACTGATGCATTACATACGATG 57.709 37.500 0.00 0.00 39.84 3.84
2189 2252 4.997905 ACTGATGCATTACATACGATGC 57.002 40.909 0.00 1.60 46.73 3.91
2190 2253 4.635223 ACTGATGCATTACATACGATGCT 58.365 39.130 0.00 0.00 46.68 3.79
2191 2254 4.687948 ACTGATGCATTACATACGATGCTC 59.312 41.667 0.00 5.68 46.68 4.26
2192 2255 4.886579 TGATGCATTACATACGATGCTCT 58.113 39.130 0.00 0.00 46.68 4.09
2193 2256 5.299949 TGATGCATTACATACGATGCTCTT 58.700 37.500 0.00 0.00 46.68 2.85
2194 2257 5.406477 TGATGCATTACATACGATGCTCTTC 59.594 40.000 0.00 5.22 46.68 2.87
2195 2258 4.948847 TGCATTACATACGATGCTCTTCT 58.051 39.130 9.39 0.00 46.68 2.85
2196 2259 5.359756 TGCATTACATACGATGCTCTTCTT 58.640 37.500 9.39 0.00 46.68 2.52
2197 2260 5.463392 TGCATTACATACGATGCTCTTCTTC 59.537 40.000 9.39 0.00 46.68 2.87
2198 2261 5.463392 GCATTACATACGATGCTCTTCTTCA 59.537 40.000 0.00 0.00 43.98 3.02
2199 2262 6.146837 GCATTACATACGATGCTCTTCTTCAT 59.853 38.462 0.00 0.00 43.98 2.57
2200 2263 7.329471 GCATTACATACGATGCTCTTCTTCATA 59.671 37.037 0.00 0.00 43.98 2.15
2201 2264 9.196552 CATTACATACGATGCTCTTCTTCATAA 57.803 33.333 0.00 0.00 0.00 1.90
2202 2265 9.764363 ATTACATACGATGCTCTTCTTCATAAA 57.236 29.630 0.00 0.00 0.00 1.40
2203 2266 9.594478 TTACATACGATGCTCTTCTTCATAAAA 57.406 29.630 0.00 0.00 0.00 1.52
2204 2267 8.492673 ACATACGATGCTCTTCTTCATAAAAA 57.507 30.769 0.00 0.00 0.00 1.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
190 195 7.692460 TCAAAGTAAGTTCAGTAGATACCGA 57.308 36.000 0.00 0.00 0.00 4.69
241 246 9.958285 CAAACGCTATAGCAACATTATAGTATG 57.042 33.333 23.99 5.37 42.21 2.39
242 247 9.151471 CCAAACGCTATAGCAACATTATAGTAT 57.849 33.333 23.99 0.00 42.21 2.12
243 248 8.361889 TCCAAACGCTATAGCAACATTATAGTA 58.638 33.333 23.99 0.00 42.21 1.82
276 281 5.548706 AAACACACACAACTTTAGCGTTA 57.451 34.783 0.00 0.00 0.00 3.18
294 299 7.812191 AGCGACAAAATTCATTTAGCATAAACA 59.188 29.630 0.00 0.00 31.56 2.83
300 305 7.643764 GCTATTAGCGACAAAATTCATTTAGCA 59.356 33.333 0.00 0.00 31.56 3.49
301 306 7.643764 TGCTATTAGCGACAAAATTCATTTAGC 59.356 33.333 10.94 0.00 46.26 3.09
302 307 9.162793 CTGCTATTAGCGACAAAATTCATTTAG 57.837 33.333 10.94 0.00 46.26 1.85
327 332 4.778842 CGCTAAAATCACGCTATTGTCT 57.221 40.909 0.00 0.00 0.00 3.41
343 348 0.326927 AGGCCCAAGTTTAGCGCTAA 59.673 50.000 25.53 25.53 0.00 3.09
365 370 1.873591 AGCTTTGGTGTGACGCTAAAG 59.126 47.619 24.64 24.64 42.49 1.85
366 371 1.961793 AGCTTTGGTGTGACGCTAAA 58.038 45.000 7.43 7.43 0.00 1.85
371 376 0.447801 GGCATAGCTTTGGTGTGACG 59.552 55.000 6.29 0.00 0.00 4.35
379 384 2.095059 AGAAACGCTTGGCATAGCTTTG 60.095 45.455 15.99 0.00 39.03 2.77
389 394 5.296813 AGCTATAACAAAGAAACGCTTGG 57.703 39.130 0.00 0.00 36.80 3.61
475 480 7.024768 GCCACATTTAGCGTTGAACTATAAAA 58.975 34.615 6.11 0.00 0.00 1.52
477 482 5.878116 AGCCACATTTAGCGTTGAACTATAA 59.122 36.000 0.00 0.00 0.00 0.98
485 490 4.419522 AGTTAAGCCACATTTAGCGTTG 57.580 40.909 0.00 0.00 0.00 4.10
497 509 2.643551 GCTATGCCAGAAGTTAAGCCA 58.356 47.619 0.00 0.00 0.00 4.75
571 623 9.575868 TGTTGATACCAAAGTATTACCTTTTGA 57.424 29.630 9.10 0.00 39.36 2.69
617 669 5.618056 TCAGTGAGATGCTGTTGAAATTC 57.382 39.130 0.00 0.00 35.60 2.17
741 794 9.483916 GTAAAGGTATGGCTTTTATTGTTTTGT 57.516 29.630 0.00 0.00 32.48 2.83
750 803 7.686434 AGACTTGAGTAAAGGTATGGCTTTTA 58.314 34.615 0.00 0.00 40.51 1.52
752 805 6.128138 AGACTTGAGTAAAGGTATGGCTTT 57.872 37.500 0.00 0.00 40.51 3.51
782 835 5.118286 AGATTTGAACTTTTGCCTGTTTGG 58.882 37.500 0.00 0.00 39.35 3.28
783 836 6.074142 GCTAGATTTGAACTTTTGCCTGTTTG 60.074 38.462 0.00 0.00 0.00 2.93
784 837 5.985530 GCTAGATTTGAACTTTTGCCTGTTT 59.014 36.000 0.00 0.00 0.00 2.83
785 838 5.302823 AGCTAGATTTGAACTTTTGCCTGTT 59.697 36.000 0.00 0.00 0.00 3.16
787 840 5.382618 AGCTAGATTTGAACTTTTGCCTG 57.617 39.130 0.00 0.00 0.00 4.85
788 841 5.122396 CGTAGCTAGATTTGAACTTTTGCCT 59.878 40.000 0.00 0.00 0.00 4.75
789 842 5.121768 TCGTAGCTAGATTTGAACTTTTGCC 59.878 40.000 0.00 0.00 0.00 4.52
790 843 6.165659 TCGTAGCTAGATTTGAACTTTTGC 57.834 37.500 0.00 0.00 0.00 3.68
791 844 7.217070 GCATTCGTAGCTAGATTTGAACTTTTG 59.783 37.037 0.00 0.00 0.00 2.44
795 852 5.419542 TGCATTCGTAGCTAGATTTGAACT 58.580 37.500 0.00 0.00 0.00 3.01
799 856 5.912360 TGATGCATTCGTAGCTAGATTTG 57.088 39.130 0.00 0.00 0.00 2.32
813 870 4.339872 TTGCTTGTTTCCTTGATGCATT 57.660 36.364 0.00 0.00 0.00 3.56
906 964 7.998383 ACTCATACCTGTATTTATGGATTGCAA 59.002 33.333 0.00 0.00 0.00 4.08
930 988 8.803235 TGTATACACTCACATTGACTCTTTACT 58.197 33.333 0.08 0.00 0.00 2.24
942 1000 4.651045 TCTGCCAGATGTATACACTCACAT 59.349 41.667 7.96 0.00 38.08 3.21
1021 1079 1.971695 GCCACTCCACCTTTTCGGG 60.972 63.158 0.00 0.00 36.97 5.14
1277 1335 5.338365 GCTATGGCATTATTATTCAGCTGC 58.662 41.667 9.47 0.00 38.54 5.25
1333 1392 1.690283 CGAGCCAGTGCAATCGAGTG 61.690 60.000 8.83 8.83 37.35 3.51
1470 1529 9.710818 TGAGATAAATAGTTAGTGGGAGTTAGT 57.289 33.333 0.00 0.00 0.00 2.24
1476 1535 7.715249 GCATGTTGAGATAAATAGTTAGTGGGA 59.285 37.037 0.00 0.00 0.00 4.37
1481 1540 8.615211 TGCTTGCATGTTGAGATAAATAGTTAG 58.385 33.333 1.14 0.00 0.00 2.34
1510 1569 3.132925 TGCATGTCGTGTGATGATATGG 58.867 45.455 0.00 0.00 34.52 2.74
1513 1572 4.053295 CTCATGCATGTCGTGTGATGATA 58.947 43.478 25.43 1.25 32.15 2.15
1540 1599 4.202814 ACATATGATAATTGGGGTGGGCAT 60.203 41.667 10.38 0.00 0.00 4.40
1541 1600 3.141838 ACATATGATAATTGGGGTGGGCA 59.858 43.478 10.38 0.00 0.00 5.36
1553 1612 7.041576 GCTTGCATGTTGAGAGACATATGATAA 60.042 37.037 10.38 0.00 38.15 1.75
1569 1628 3.156293 TGAAGTGGTATGCTTGCATGTT 58.844 40.909 17.26 4.11 0.00 2.71
1680 1742 8.622572 AGAGTACTAGTTAGTAGGAGGTAACT 57.377 38.462 0.00 0.00 44.83 2.24
1690 1752 7.933215 TGCATGTTGAGAGTACTAGTTAGTA 57.067 36.000 0.00 0.00 37.73 1.82
1699 1761 4.631377 TGTATGCTTGCATGTTGAGAGTAC 59.369 41.667 17.26 5.58 0.00 2.73
1731 1793 4.098349 GGGCTTTTCTCATGCATGTTATGA 59.902 41.667 25.43 16.03 33.76 2.15
1734 1796 3.193267 GTGGGCTTTTCTCATGCATGTTA 59.807 43.478 25.43 12.52 0.00 2.41
1752 1814 4.689062 AGACATATGATAGTAGGGGTGGG 58.311 47.826 10.38 0.00 0.00 4.61
1755 1817 8.232412 TGTTAAGAGACATATGATAGTAGGGGT 58.768 37.037 10.38 0.00 0.00 4.95
1756 1818 8.651589 TGTTAAGAGACATATGATAGTAGGGG 57.348 38.462 10.38 0.00 0.00 4.79
1802 1865 4.142687 CGGGGATATTTCGCAACATAATCC 60.143 45.833 2.82 0.00 36.56 3.01
1803 1866 4.969816 CGGGGATATTTCGCAACATAATC 58.030 43.478 2.82 0.00 36.56 1.75
1813 1876 1.267832 CGTTGTTGCGGGGATATTTCG 60.268 52.381 0.00 0.00 0.00 3.46
1814 1877 1.741145 ACGTTGTTGCGGGGATATTTC 59.259 47.619 0.00 0.00 35.98 2.17
1815 1878 1.828979 ACGTTGTTGCGGGGATATTT 58.171 45.000 0.00 0.00 35.98 1.40
1816 1879 2.695127 TACGTTGTTGCGGGGATATT 57.305 45.000 0.00 0.00 35.98 1.28
1817 1880 2.557317 CTTACGTTGTTGCGGGGATAT 58.443 47.619 0.00 0.00 35.98 1.63
1818 1881 1.405797 CCTTACGTTGTTGCGGGGATA 60.406 52.381 0.00 0.00 35.98 2.59
1819 1882 0.675522 CCTTACGTTGTTGCGGGGAT 60.676 55.000 0.00 0.00 35.98 3.85
1820 1883 1.301874 CCTTACGTTGTTGCGGGGA 60.302 57.895 0.00 0.00 35.98 4.81
1821 1884 2.329614 CCCTTACGTTGTTGCGGGG 61.330 63.158 0.00 0.00 35.98 5.73
1822 1885 2.329614 CCCCTTACGTTGTTGCGGG 61.330 63.158 0.00 0.00 35.98 6.13
1823 1886 2.973316 GCCCCTTACGTTGTTGCGG 61.973 63.158 0.00 0.00 35.98 5.69
1824 1887 2.559330 GCCCCTTACGTTGTTGCG 59.441 61.111 0.00 0.00 37.94 4.85
1825 1888 2.178892 GACGCCCCTTACGTTGTTGC 62.179 60.000 0.00 0.00 45.24 4.17
1826 1889 0.881159 TGACGCCCCTTACGTTGTTG 60.881 55.000 0.00 0.00 45.24 3.33
1827 1890 0.035739 ATGACGCCCCTTACGTTGTT 59.964 50.000 0.00 0.00 45.24 2.83
1828 1891 0.390735 GATGACGCCCCTTACGTTGT 60.391 55.000 0.00 0.00 45.24 3.32
1829 1892 0.108329 AGATGACGCCCCTTACGTTG 60.108 55.000 0.00 0.00 45.24 4.10
1830 1893 1.407979 CTAGATGACGCCCCTTACGTT 59.592 52.381 0.00 0.00 45.24 3.99
1832 1895 1.030457 ACTAGATGACGCCCCTTACG 58.970 55.000 0.00 0.00 0.00 3.18
1833 1896 4.157472 GGTATACTAGATGACGCCCCTTAC 59.843 50.000 2.25 0.00 0.00 2.34
1834 1897 4.043812 AGGTATACTAGATGACGCCCCTTA 59.956 45.833 2.25 0.00 0.00 2.69
1835 1898 3.163467 GGTATACTAGATGACGCCCCTT 58.837 50.000 2.25 0.00 0.00 3.95
1836 1899 2.379226 AGGTATACTAGATGACGCCCCT 59.621 50.000 2.25 0.00 0.00 4.79
1837 1900 2.805194 AGGTATACTAGATGACGCCCC 58.195 52.381 2.25 0.00 0.00 5.80
1838 1901 5.008980 ACTTAGGTATACTAGATGACGCCC 58.991 45.833 2.25 0.00 32.16 6.13
1839 1902 7.390162 AGTTACTTAGGTATACTAGATGACGCC 59.610 40.741 2.25 0.00 32.16 5.68
1840 1903 8.321650 AGTTACTTAGGTATACTAGATGACGC 57.678 38.462 2.25 0.00 32.16 5.19
1854 1917 8.529476 CCACTAGTGTTGATAAGTTACTTAGGT 58.471 37.037 21.18 0.00 29.02 3.08
1855 1918 8.529476 ACCACTAGTGTTGATAAGTTACTTAGG 58.471 37.037 21.18 4.47 29.02 2.69
1856 1919 9.924650 AACCACTAGTGTTGATAAGTTACTTAG 57.075 33.333 21.18 2.60 29.02 2.18
1857 1920 9.701098 CAACCACTAGTGTTGATAAGTTACTTA 57.299 33.333 21.18 7.32 0.00 2.24
1858 1921 7.660208 CCAACCACTAGTGTTGATAAGTTACTT 59.340 37.037 26.30 2.32 0.00 2.24
1859 1922 7.159372 CCAACCACTAGTGTTGATAAGTTACT 58.841 38.462 26.30 2.82 0.00 2.24
1860 1923 6.370718 CCCAACCACTAGTGTTGATAAGTTAC 59.629 42.308 26.30 0.00 0.00 2.50
1861 1924 6.469410 CCCAACCACTAGTGTTGATAAGTTA 58.531 40.000 26.30 0.00 0.00 2.24
1862 1925 5.313712 CCCAACCACTAGTGTTGATAAGTT 58.686 41.667 26.30 17.44 0.00 2.66
1863 1926 4.263331 CCCCAACCACTAGTGTTGATAAGT 60.263 45.833 26.30 13.60 0.00 2.24
1864 1927 4.261801 CCCCAACCACTAGTGTTGATAAG 58.738 47.826 26.30 13.09 0.00 1.73
1865 1928 3.560453 GCCCCAACCACTAGTGTTGATAA 60.560 47.826 26.30 0.00 0.00 1.75
1866 1929 2.026636 GCCCCAACCACTAGTGTTGATA 60.027 50.000 26.30 0.00 0.00 2.15
1867 1930 1.271926 GCCCCAACCACTAGTGTTGAT 60.272 52.381 26.30 9.16 0.00 2.57
1868 1931 0.109723 GCCCCAACCACTAGTGTTGA 59.890 55.000 26.30 0.00 0.00 3.18
1869 1932 1.234615 CGCCCCAACCACTAGTGTTG 61.235 60.000 21.18 21.38 0.00 3.33
1870 1933 1.072505 CGCCCCAACCACTAGTGTT 59.927 57.895 21.18 12.47 0.00 3.32
1871 1934 2.747686 CGCCCCAACCACTAGTGT 59.252 61.111 21.18 7.09 0.00 3.55
1872 1935 2.746277 GCGCCCCAACCACTAGTG 60.746 66.667 16.34 16.34 0.00 2.74
1873 1936 4.388499 CGCGCCCCAACCACTAGT 62.388 66.667 0.00 0.00 0.00 2.57
1898 1961 3.729965 ATTCCTCTCAGGCAGCGCG 62.730 63.158 0.00 0.00 34.61 6.86
1899 1962 1.028868 AAATTCCTCTCAGGCAGCGC 61.029 55.000 0.00 0.00 34.61 5.92
1900 1963 1.012841 GAAATTCCTCTCAGGCAGCG 58.987 55.000 0.00 0.00 34.61 5.18
1901 1964 1.012841 CGAAATTCCTCTCAGGCAGC 58.987 55.000 0.00 0.00 34.61 5.25
1902 1965 1.661341 CCGAAATTCCTCTCAGGCAG 58.339 55.000 0.00 0.00 34.61 4.85
1903 1966 0.392998 GCCGAAATTCCTCTCAGGCA 60.393 55.000 3.09 0.00 42.37 4.75
1904 1967 1.432270 CGCCGAAATTCCTCTCAGGC 61.432 60.000 0.00 0.00 39.68 4.85
1905 1968 0.811616 CCGCCGAAATTCCTCTCAGG 60.812 60.000 0.00 0.00 36.46 3.86
1906 1969 0.108138 ACCGCCGAAATTCCTCTCAG 60.108 55.000 0.00 0.00 0.00 3.35
1907 1970 0.391130 CACCGCCGAAATTCCTCTCA 60.391 55.000 0.00 0.00 0.00 3.27
1908 1971 1.706287 GCACCGCCGAAATTCCTCTC 61.706 60.000 0.00 0.00 0.00 3.20
1909 1972 1.745489 GCACCGCCGAAATTCCTCT 60.745 57.895 0.00 0.00 0.00 3.69
1910 1973 2.761195 GGCACCGCCGAAATTCCTC 61.761 63.158 0.00 0.00 39.62 3.71
1911 1974 2.750237 GGCACCGCCGAAATTCCT 60.750 61.111 0.00 0.00 39.62 3.36
1925 1988 4.947147 GACGCACCCAACCTGGCA 62.947 66.667 0.00 0.00 35.79 4.92
1935 1998 0.591659 GAAAGTGAAAGGGACGCACC 59.408 55.000 0.00 0.00 33.14 5.01
1936 1999 0.591659 GGAAAGTGAAAGGGACGCAC 59.408 55.000 0.00 0.00 0.00 5.34
1937 2000 0.472471 AGGAAAGTGAAAGGGACGCA 59.528 50.000 0.00 0.00 0.00 5.24
1938 2001 0.875059 CAGGAAAGTGAAAGGGACGC 59.125 55.000 0.00 0.00 0.00 5.19
1939 2002 1.523758 CCAGGAAAGTGAAAGGGACG 58.476 55.000 0.00 0.00 0.00 4.79
1940 2003 1.145119 ACCCAGGAAAGTGAAAGGGAC 59.855 52.381 0.00 0.00 39.60 4.46
1941 2004 1.144913 CACCCAGGAAAGTGAAAGGGA 59.855 52.381 0.00 0.00 39.60 4.20
1942 2005 1.133482 ACACCCAGGAAAGTGAAAGGG 60.133 52.381 1.59 0.00 42.07 3.95
1943 2006 2.364972 ACACCCAGGAAAGTGAAAGG 57.635 50.000 1.59 0.00 37.43 3.11
1944 2007 3.815401 CAGTACACCCAGGAAAGTGAAAG 59.185 47.826 0.00 0.00 37.43 2.62
1945 2008 3.815809 CAGTACACCCAGGAAAGTGAAA 58.184 45.455 0.00 0.00 37.43 2.69
1946 2009 2.486548 GCAGTACACCCAGGAAAGTGAA 60.487 50.000 0.00 0.00 37.43 3.18
1947 2010 1.071699 GCAGTACACCCAGGAAAGTGA 59.928 52.381 0.00 0.00 37.43 3.41
1948 2011 1.202758 TGCAGTACACCCAGGAAAGTG 60.203 52.381 0.00 0.00 39.93 3.16
1949 2012 1.136828 TGCAGTACACCCAGGAAAGT 58.863 50.000 0.00 0.00 0.00 2.66
1950 2013 1.523758 GTGCAGTACACCCAGGAAAG 58.476 55.000 0.00 0.00 44.02 2.62
1951 2014 3.717842 GTGCAGTACACCCAGGAAA 57.282 52.632 0.00 0.00 44.02 3.13
1979 2042 3.795101 GCTGATGTGCATTAACTTCATGC 59.205 43.478 0.00 1.54 46.25 4.06
1980 2043 4.989044 TGCTGATGTGCATTAACTTCATG 58.011 39.130 0.00 0.00 38.12 3.07
1992 2055 3.730061 GCACTACTTTCATGCTGATGTGC 60.730 47.826 11.47 11.47 40.72 4.57
1993 2056 3.437741 TGCACTACTTTCATGCTGATGTG 59.562 43.478 0.00 0.00 40.13 3.21
1994 2057 3.678289 TGCACTACTTTCATGCTGATGT 58.322 40.909 0.00 0.00 40.13 3.06
1995 2058 4.690184 TTGCACTACTTTCATGCTGATG 57.310 40.909 0.00 0.00 40.13 3.07
1996 2059 5.066117 CAGATTGCACTACTTTCATGCTGAT 59.934 40.000 0.00 0.00 40.13 2.90
1997 2060 4.393990 CAGATTGCACTACTTTCATGCTGA 59.606 41.667 0.00 0.00 40.13 4.26
1998 2061 4.155462 ACAGATTGCACTACTTTCATGCTG 59.845 41.667 0.00 0.00 40.13 4.41
1999 2062 4.330250 ACAGATTGCACTACTTTCATGCT 58.670 39.130 0.00 0.00 40.13 3.79
2000 2063 4.656041 GACAGATTGCACTACTTTCATGC 58.344 43.478 0.00 0.00 39.88 4.06
2001 2064 4.627035 TCGACAGATTGCACTACTTTCATG 59.373 41.667 0.00 0.00 0.00 3.07
2002 2065 4.820897 TCGACAGATTGCACTACTTTCAT 58.179 39.130 0.00 0.00 0.00 2.57
2003 2066 4.251543 TCGACAGATTGCACTACTTTCA 57.748 40.909 0.00 0.00 0.00 2.69
2004 2067 4.033358 CCATCGACAGATTGCACTACTTTC 59.967 45.833 0.00 0.00 34.23 2.62
2005 2068 3.935203 CCATCGACAGATTGCACTACTTT 59.065 43.478 0.00 0.00 34.23 2.66
2006 2069 3.195610 TCCATCGACAGATTGCACTACTT 59.804 43.478 0.00 0.00 34.23 2.24
2007 2070 2.760650 TCCATCGACAGATTGCACTACT 59.239 45.455 0.00 0.00 34.23 2.57
2008 2071 3.165058 TCCATCGACAGATTGCACTAC 57.835 47.619 0.00 0.00 34.23 2.73
2009 2072 3.384467 TGATCCATCGACAGATTGCACTA 59.616 43.478 0.00 0.00 34.23 2.74
2010 2073 2.169144 TGATCCATCGACAGATTGCACT 59.831 45.455 0.00 0.00 34.23 4.40
2011 2074 2.554142 TGATCCATCGACAGATTGCAC 58.446 47.619 0.00 0.00 34.23 4.57
2012 2075 2.985957 TGATCCATCGACAGATTGCA 57.014 45.000 0.00 0.00 34.23 4.08
2013 2076 2.740981 GGATGATCCATCGACAGATTGC 59.259 50.000 6.60 0.00 41.35 3.56
2014 2077 4.268797 AGGATGATCCATCGACAGATTG 57.731 45.455 14.90 0.00 41.35 2.67
2015 2078 4.970860 AAGGATGATCCATCGACAGATT 57.029 40.909 14.90 0.00 41.35 2.40
2016 2079 4.465660 CCTAAGGATGATCCATCGACAGAT 59.534 45.833 14.90 0.00 41.35 2.90
2017 2080 3.829026 CCTAAGGATGATCCATCGACAGA 59.171 47.826 14.90 0.00 41.35 3.41
2018 2081 3.829026 TCCTAAGGATGATCCATCGACAG 59.171 47.826 14.90 0.00 41.35 3.51
2019 2082 3.829026 CTCCTAAGGATGATCCATCGACA 59.171 47.826 14.90 0.00 41.35 4.35
2020 2083 4.082845 TCTCCTAAGGATGATCCATCGAC 58.917 47.826 14.90 0.00 41.35 4.20
2021 2084 4.388577 TCTCCTAAGGATGATCCATCGA 57.611 45.455 14.90 2.59 41.35 3.59
2022 2085 5.474578 TTTCTCCTAAGGATGATCCATCG 57.525 43.478 14.90 0.00 41.35 3.84
2023 2086 6.934083 GTCTTTTCTCCTAAGGATGATCCATC 59.066 42.308 14.90 0.00 39.61 3.51
2024 2087 6.388100 TGTCTTTTCTCCTAAGGATGATCCAT 59.612 38.462 14.90 4.03 39.61 3.41
2025 2088 5.726308 TGTCTTTTCTCCTAAGGATGATCCA 59.274 40.000 14.90 0.00 39.61 3.41
2026 2089 6.240549 TGTCTTTTCTCCTAAGGATGATCC 57.759 41.667 2.46 2.46 36.58 3.36
2027 2090 7.989741 TCATTGTCTTTTCTCCTAAGGATGATC 59.010 37.037 0.00 0.00 0.00 2.92
2028 2091 7.772757 GTCATTGTCTTTTCTCCTAAGGATGAT 59.227 37.037 0.00 0.00 0.00 2.45
2029 2092 7.106239 GTCATTGTCTTTTCTCCTAAGGATGA 58.894 38.462 0.00 0.00 0.00 2.92
2030 2093 6.881065 TGTCATTGTCTTTTCTCCTAAGGATG 59.119 38.462 0.00 0.00 0.00 3.51
2031 2094 7.020827 TGTCATTGTCTTTTCTCCTAAGGAT 57.979 36.000 0.00 0.00 0.00 3.24
2032 2095 6.433847 TGTCATTGTCTTTTCTCCTAAGGA 57.566 37.500 0.00 0.00 0.00 3.36
2033 2096 6.036517 CGATGTCATTGTCTTTTCTCCTAAGG 59.963 42.308 0.00 0.00 0.00 2.69
2034 2097 6.456181 GCGATGTCATTGTCTTTTCTCCTAAG 60.456 42.308 1.96 0.00 0.00 2.18
2035 2098 5.351465 GCGATGTCATTGTCTTTTCTCCTAA 59.649 40.000 1.96 0.00 0.00 2.69
2036 2099 4.870426 GCGATGTCATTGTCTTTTCTCCTA 59.130 41.667 1.96 0.00 0.00 2.94
2037 2100 3.686726 GCGATGTCATTGTCTTTTCTCCT 59.313 43.478 1.96 0.00 0.00 3.69
2038 2101 3.181506 GGCGATGTCATTGTCTTTTCTCC 60.182 47.826 1.96 0.00 0.00 3.71
2039 2102 3.436704 TGGCGATGTCATTGTCTTTTCTC 59.563 43.478 6.24 0.00 0.00 2.87
2040 2103 3.411446 TGGCGATGTCATTGTCTTTTCT 58.589 40.909 6.24 0.00 0.00 2.52
2041 2104 3.829886 TGGCGATGTCATTGTCTTTTC 57.170 42.857 6.24 0.00 0.00 2.29
2042 2105 3.609175 CGTTGGCGATGTCATTGTCTTTT 60.609 43.478 6.24 0.00 41.33 2.27
2043 2106 2.095768 CGTTGGCGATGTCATTGTCTTT 60.096 45.455 6.24 0.00 41.33 2.52
2044 2107 1.464608 CGTTGGCGATGTCATTGTCTT 59.535 47.619 6.24 0.00 41.33 3.01
2045 2108 1.078709 CGTTGGCGATGTCATTGTCT 58.921 50.000 6.24 0.00 41.33 3.41
2046 2109 0.796312 ACGTTGGCGATGTCATTGTC 59.204 50.000 0.00 0.00 42.00 3.18
2047 2110 0.516877 CACGTTGGCGATGTCATTGT 59.483 50.000 0.00 0.00 42.00 2.71
2048 2111 0.516877 ACACGTTGGCGATGTCATTG 59.483 50.000 0.00 0.00 42.00 2.82
2049 2112 0.516877 CACACGTTGGCGATGTCATT 59.483 50.000 0.00 0.00 42.00 2.57
2050 2113 1.298157 CCACACGTTGGCGATGTCAT 61.298 55.000 0.00 0.00 39.07 3.06
2051 2114 1.958715 CCACACGTTGGCGATGTCA 60.959 57.895 0.00 0.00 39.07 3.58
2052 2115 2.860293 CCACACGTTGGCGATGTC 59.140 61.111 0.00 0.00 39.07 3.06
2072 2135 4.463879 CTCTCAGGCGGCAGGTGG 62.464 72.222 13.08 0.00 0.00 4.61
2073 2136 4.463879 CCTCTCAGGCGGCAGGTG 62.464 72.222 13.08 0.02 0.00 4.00
2074 2137 4.704103 TCCTCTCAGGCGGCAGGT 62.704 66.667 13.08 0.00 34.61 4.00
2075 2138 3.382803 CTTCCTCTCAGGCGGCAGG 62.383 68.421 13.08 9.46 34.61 4.85
2076 2139 2.177594 AACTTCCTCTCAGGCGGCAG 62.178 60.000 13.08 2.41 34.61 4.85
2077 2140 1.768684 AAACTTCCTCTCAGGCGGCA 61.769 55.000 13.08 0.00 34.61 5.69
2078 2141 1.003233 AAACTTCCTCTCAGGCGGC 60.003 57.895 0.00 0.00 34.61 6.53
2079 2142 0.610687 AGAAACTTCCTCTCAGGCGG 59.389 55.000 0.00 0.00 34.61 6.13
2080 2143 1.719600 CAGAAACTTCCTCTCAGGCG 58.280 55.000 0.00 0.00 34.61 5.52
2081 2144 1.447945 GCAGAAACTTCCTCTCAGGC 58.552 55.000 0.00 0.00 34.61 4.85
2082 2145 1.674221 CCGCAGAAACTTCCTCTCAGG 60.674 57.143 0.00 0.00 36.46 3.86
2083 2146 1.001406 ACCGCAGAAACTTCCTCTCAG 59.999 52.381 0.00 0.00 0.00 3.35
2084 2147 1.048601 ACCGCAGAAACTTCCTCTCA 58.951 50.000 0.00 0.00 0.00 3.27
2085 2148 1.433534 CACCGCAGAAACTTCCTCTC 58.566 55.000 0.00 0.00 0.00 3.20
2086 2149 0.603975 GCACCGCAGAAACTTCCTCT 60.604 55.000 0.00 0.00 0.00 3.69
2087 2150 1.578206 GGCACCGCAGAAACTTCCTC 61.578 60.000 0.00 0.00 0.00 3.71
2088 2151 1.600916 GGCACCGCAGAAACTTCCT 60.601 57.895 0.00 0.00 0.00 3.36
2089 2152 1.856265 CTGGCACCGCAGAAACTTCC 61.856 60.000 0.00 0.00 0.00 3.46
2090 2153 1.576421 CTGGCACCGCAGAAACTTC 59.424 57.895 0.00 0.00 0.00 3.01
2091 2154 1.898574 CCTGGCACCGCAGAAACTT 60.899 57.895 0.00 0.00 0.00 2.66
2092 2155 1.764571 TACCTGGCACCGCAGAAACT 61.765 55.000 0.00 0.00 0.00 2.66
2093 2156 1.298859 CTACCTGGCACCGCAGAAAC 61.299 60.000 0.00 0.00 0.00 2.78
2094 2157 1.003839 CTACCTGGCACCGCAGAAA 60.004 57.895 0.00 0.00 0.00 2.52
2095 2158 2.662596 CTACCTGGCACCGCAGAA 59.337 61.111 0.00 0.00 0.00 3.02
2096 2159 3.390521 CCTACCTGGCACCGCAGA 61.391 66.667 0.00 0.00 0.00 4.26
2097 2160 4.473520 CCCTACCTGGCACCGCAG 62.474 72.222 0.00 0.00 0.00 5.18
2099 2162 4.778143 CACCCTACCTGGCACCGC 62.778 72.222 0.00 0.00 0.00 5.68
2100 2163 4.096003 CCACCCTACCTGGCACCG 62.096 72.222 0.00 0.00 0.00 4.94
2113 2176 3.365265 CACTGAAAGGGCGCCACC 61.365 66.667 30.85 12.35 39.30 4.61
2114 2177 1.244019 ATTCACTGAAAGGGCGCCAC 61.244 55.000 30.85 17.99 37.19 5.01
2115 2178 0.539438 AATTCACTGAAAGGGCGCCA 60.539 50.000 30.85 5.89 37.19 5.69
2116 2179 0.603065 AAATTCACTGAAAGGGCGCC 59.397 50.000 21.18 21.18 37.19 6.53
2117 2180 1.269448 TCAAATTCACTGAAAGGGCGC 59.731 47.619 0.00 0.00 37.19 6.53
2118 2181 2.669391 GCTCAAATTCACTGAAAGGGCG 60.669 50.000 0.00 0.00 37.19 6.13
2119 2182 2.560105 AGCTCAAATTCACTGAAAGGGC 59.440 45.455 0.00 1.26 37.19 5.19
2120 2183 4.077822 AGAGCTCAAATTCACTGAAAGGG 58.922 43.478 17.77 0.00 40.34 3.95
2121 2184 4.758674 TCAGAGCTCAAATTCACTGAAAGG 59.241 41.667 17.77 0.00 39.30 3.11
2122 2185 5.936686 TCAGAGCTCAAATTCACTGAAAG 57.063 39.130 17.77 0.00 42.29 2.62
2123 2186 6.487668 TCAATCAGAGCTCAAATTCACTGAAA 59.512 34.615 17.77 0.00 37.79 2.69
2124 2187 5.999600 TCAATCAGAGCTCAAATTCACTGAA 59.000 36.000 17.77 0.00 37.79 3.02
2125 2188 5.554070 TCAATCAGAGCTCAAATTCACTGA 58.446 37.500 17.77 8.50 38.44 3.41
2126 2189 5.874895 TCAATCAGAGCTCAAATTCACTG 57.125 39.130 17.77 2.52 0.00 3.66
2127 2190 8.571461 TTTATCAATCAGAGCTCAAATTCACT 57.429 30.769 17.77 4.62 0.00 3.41
2128 2191 9.798994 ATTTTATCAATCAGAGCTCAAATTCAC 57.201 29.630 17.77 0.00 0.00 3.18
2129 2192 9.797556 CATTTTATCAATCAGAGCTCAAATTCA 57.202 29.630 17.77 1.57 0.00 2.57
2130 2193 8.753175 GCATTTTATCAATCAGAGCTCAAATTC 58.247 33.333 17.77 0.74 0.00 2.17
2131 2194 8.255206 TGCATTTTATCAATCAGAGCTCAAATT 58.745 29.630 17.77 11.83 0.00 1.82
2132 2195 7.778083 TGCATTTTATCAATCAGAGCTCAAAT 58.222 30.769 17.77 5.73 0.00 2.32
2133 2196 7.160547 TGCATTTTATCAATCAGAGCTCAAA 57.839 32.000 17.77 3.17 0.00 2.69
2134 2197 6.762702 TGCATTTTATCAATCAGAGCTCAA 57.237 33.333 17.77 3.59 0.00 3.02
2135 2198 6.734871 GCATGCATTTTATCAATCAGAGCTCA 60.735 38.462 17.77 0.00 0.00 4.26
2136 2199 5.629849 GCATGCATTTTATCAATCAGAGCTC 59.370 40.000 14.21 5.27 0.00 4.09
2137 2200 5.068591 TGCATGCATTTTATCAATCAGAGCT 59.931 36.000 18.46 0.00 0.00 4.09
2138 2201 5.286438 TGCATGCATTTTATCAATCAGAGC 58.714 37.500 18.46 0.00 0.00 4.09
2139 2202 6.923508 ACATGCATGCATTTTATCAATCAGAG 59.076 34.615 30.32 15.64 33.90 3.35
2140 2203 6.811954 ACATGCATGCATTTTATCAATCAGA 58.188 32.000 30.32 0.00 33.90 3.27
2141 2204 7.650104 TGTACATGCATGCATTTTATCAATCAG 59.350 33.333 30.32 16.25 33.90 2.90
2142 2205 7.490000 TGTACATGCATGCATTTTATCAATCA 58.510 30.769 30.32 14.24 33.90 2.57
2143 2206 7.933728 TGTACATGCATGCATTTTATCAATC 57.066 32.000 30.32 12.12 33.90 2.67
2144 2207 7.982919 AGTTGTACATGCATGCATTTTATCAAT 59.017 29.630 30.32 10.63 33.90 2.57
2145 2208 7.275999 CAGTTGTACATGCATGCATTTTATCAA 59.724 33.333 30.32 23.67 33.90 2.57
2146 2209 6.752815 CAGTTGTACATGCATGCATTTTATCA 59.247 34.615 30.32 19.96 33.90 2.15
2147 2210 6.974048 TCAGTTGTACATGCATGCATTTTATC 59.026 34.615 30.32 17.73 33.90 1.75
2148 2211 6.865411 TCAGTTGTACATGCATGCATTTTAT 58.135 32.000 30.32 17.65 33.90 1.40
2149 2212 6.264841 TCAGTTGTACATGCATGCATTTTA 57.735 33.333 30.32 20.41 33.90 1.52
2150 2213 5.136816 TCAGTTGTACATGCATGCATTTT 57.863 34.783 30.32 21.43 33.90 1.82
2151 2214 4.787260 TCAGTTGTACATGCATGCATTT 57.213 36.364 30.32 25.89 33.90 2.32
2152 2215 4.678622 CATCAGTTGTACATGCATGCATT 58.321 39.130 30.32 21.91 33.90 3.56
2153 2216 3.490249 GCATCAGTTGTACATGCATGCAT 60.490 43.478 27.46 27.46 42.18 3.96
2154 2217 2.159352 GCATCAGTTGTACATGCATGCA 60.159 45.455 26.53 25.04 42.18 3.96
2155 2218 2.159352 TGCATCAGTTGTACATGCATGC 60.159 45.455 26.53 11.82 46.22 4.06
2156 2219 3.768468 TGCATCAGTTGTACATGCATG 57.232 42.857 25.09 25.09 46.22 4.06
2159 2222 5.233957 TGTAATGCATCAGTTGTACATGC 57.766 39.130 10.74 10.74 42.81 4.06
2160 2223 7.042791 TCGTATGTAATGCATCAGTTGTACATG 60.043 37.037 21.58 11.32 38.94 3.21
2161 2224 6.983890 TCGTATGTAATGCATCAGTTGTACAT 59.016 34.615 18.56 18.56 38.94 2.29
2162 2225 6.334202 TCGTATGTAATGCATCAGTTGTACA 58.666 36.000 0.00 4.26 38.94 2.90
2163 2226 6.822073 TCGTATGTAATGCATCAGTTGTAC 57.178 37.500 0.00 0.00 38.94 2.90
2164 2227 6.073819 GCATCGTATGTAATGCATCAGTTGTA 60.074 38.462 0.00 0.00 45.97 2.41
2165 2228 5.277490 GCATCGTATGTAATGCATCAGTTGT 60.277 40.000 0.00 0.00 45.97 3.32
2166 2229 5.142265 GCATCGTATGTAATGCATCAGTTG 58.858 41.667 0.00 0.00 45.97 3.16
2167 2230 5.348418 GCATCGTATGTAATGCATCAGTT 57.652 39.130 0.00 0.00 45.97 3.16
2168 2231 4.997905 GCATCGTATGTAATGCATCAGT 57.002 40.909 0.00 0.00 45.97 3.41
2174 2237 5.463392 TGAAGAAGAGCATCGTATGTAATGC 59.537 40.000 1.27 1.27 46.84 3.56
2175 2238 7.649370 ATGAAGAAGAGCATCGTATGTAATG 57.351 36.000 0.00 0.00 42.67 1.90
2176 2239 9.764363 TTTATGAAGAAGAGCATCGTATGTAAT 57.236 29.630 0.00 0.00 42.67 1.89
2177 2240 9.594478 TTTTATGAAGAAGAGCATCGTATGTAA 57.406 29.630 0.00 0.00 42.67 2.41
2178 2241 9.594478 TTTTTATGAAGAAGAGCATCGTATGTA 57.406 29.630 0.00 0.00 42.67 2.29
2179 2242 8.492673 TTTTTATGAAGAAGAGCATCGTATGT 57.507 30.769 0.00 0.00 42.67 2.29


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.