>input_sequence_86503
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-----------------ATGAGCGGAGGTAACAATGGTCCCGAAAAGGTGGAGTGGCCGGAGCTGTTGGGCGTCCCGGCG
ACGCCGGCGGTGAGCAAGATCCGCCGGGACAGGCCGGACGTCACCGTGGTGGTGCTTCCGGACCAAACTCCGGTGCCCAT
TGGGTTCAACAGCAAGCGCGTCCGCGTCTTCTACGACTCGCAACAGCCCGAAGCACTTGTCGCCAACATCCCCATGGTCG
GCTAG---------------------------------------------------------------------------
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>chr6A_1_TraesCS6A01G079300
GATTTCTCCCTTCCACACCTCTCAAAATATTTTGGAATTTTGGTTTAAATTCAAAAAAT---AATAATTTAACCAAACAT
TTTCCATTTA-TAATGTTCTATGTAATTCATAAATTTATTTGGACATTAAAGTTTATTTTAATGTTTTGAAATATTTAAA
AGTTCAATGTTCAAACAAATACTTCAAAATATTTTCGGTATCTACTGAACTTACTTTGAACTATAAATATCAAAATTTTA
AATAGCATACTATAATGTTGCTATAGCGTTTGGAGTGGCATAACGCTAAAGTTGTGTGTGTTTATGCTAAATGAATTTTG
TCGCTAATAGCAGACAATAGCGTGATTTTAGCGCTAAACTTGGGCCTCACTTTAGCGTCACACCAAAGCTATGCCAAGCG
TTTCTTTGTTATAGCTAGATGCTTTGCTGGTATGCCTTTGTTATGGTTGCATGCTGCTATGCTTGATTGTACAGTTTTTT
TTTATAGTTC-------AACGCTAAATGTGGCTTAACTTC----------------------------------------
TGGCATAGCCTGCTATATAATTTTTTGATAACTATACAACTGTAATGACTGAAATATTTTGATCAAAAGGTAATACTTTG
GTATCAACAAAAATTATTGAAATTCAGCGAATTTCAACAGCATCTCACTGAAAGTGAAAACCAATGCAACCACTAGACTG
AAATCCAATGTGGCAGTATATTATGACGGACAGTACCAAGATAATAGGTGTGA-TACACGAAAACGGAAAAAAACAAAAC
AATAAAAGCCATACCTTTACTCAAGTCTTATTGACCAAACAGGC----AAAAGTTCAAATCTAGCTACGAATGCATCAAG
GAAACAAGCAAAAGTTCAACTGACCAAACAAGGC-AAGGGCGTCCGGCAAAGCCAACGCTCTAGTAATGACGGCATTCGT
TGCTTGCAATCCATAAATACAGGTATGAGTAAAGAGTCAATGTGAGTGTATACATCTGGCAGACGTGCACACATCAGTAA
TAATTAAACAGATCGAGATGAGCGGAGGTAACAATGGTCCCGAAAAGGTGGAGTGGCCGGAGCTGTTGGGCGTCCCGGCG
ACGCCGGCGGTGAGCAAGATCCGCCGGGACAGGCCGGACGTCACCGTGGTGGTGCTTCCGGACCAAACTCCGGTGCCCAT
TGGGTTCAACAGCAAGCGCGTCCGCGTCTTCTACGACTCGCAACAGCCCGAAGCACTTGTCGCCAACATCCCCATGGTCG
GCTAGCCTGCCGGCCGGACGGCGGCCACGCATATGCGTGCATTCCGGTCGATCGGCAGCTGAATAATAATGCCATAGCGC
TGTGGCCCTCATGCA-TGGATACGTTACCTGCACTCGATTGCACTGGCTCGGTTTATGCTTATTTCAATCAATAGAAGGT
GATTGTTCTGTAAATTCTATGAAGAGAAATAATCATTTACAAGTTTATCAAATTGTAAGTAAGGAATCTTATCTTCTGTA
TCTAAATAACTAACTCCCACTAACTATTTATCTCAACATGCAAGCATGCCATATCATCACACGACATGCATGAGAAAAAT
GCCCACCCCAATTATCATATGTCTCTCAACATGCAAGCAT--ACCACTTCATTATGGCTTGCATGA-AAAAAGATCCATC
TCAACATGCAAATATACATAAGAATTTTTATTCTATTATGCTACATATATTTGATTAAAAAAGTTACCTCCTACTAACTA
GTACTCTCAACATGCAAGCATACAACATCATCTCATAACATGCATGAGAAAAGCCCACCCCT-ACTATCATATGTCTCTT
AACAAGCAAGCATGCCACTTCATCGGATTATGTTGCGAAATATCCCCGCAACAACGTAAGGGGCGTCATCTAGTATACCT
AAGTAACTTATCAACACTAGTGGTTGGGGCGCGCCCGTGGCGCGCTGCCTGAGAGGAATTTCGGCGGTGCCAGGTTGGGT
GCGTCCCTTTCACTTTCCTGGGTGTACTGCACAATGCTATTGCATGAAGTTAATGCACATCAGCATGAAAGTAGTGCAAT
CTGTCGATGGATCATCCTTAGGAGAAAAGACAATGACATCGCCAACGTGTGGCGCCACCTGCCGCCTGAGAGGAAGTTTC
TGCGGTGCCAGGTAGGGTGGCGCCCTTTCAGTGAATTTGAGCTCTGATTGATAAAATGCATGCATGTACAACTGATGCAT
TACATACGATGCTCTTCTTCATAAAAAACTAACCAAATACATCAAATAAA
>chr6D_1
GATTTCTCCCTTCCACACCTCTCAAAATATTTTGGAATTTTGCTTTGAATTCAAAATAATTAAAATAATTAACCAAATAA
TTTTCATTTTGTAATGTTCTATACAATTCATAAATTTATTTAAACATTAAAGTTTATTTTAATGTTTTGAAATATTTACA
ATTTCAATG-TCAAACAAATACTTCAAAATATTTCC-GTATCTACTGAATTTACTTTGAGCTATAAATATCAAAAATTTA
AACGG---ACTATAATGTTGCTATAGCGTTTGGAGCGGCACAACGCTAAAGTTGTGTGGGTTTACA-TAAATGAATTTTG
TCGCTAATAGCGGACAATAGCGTGATT-TAGCGCTAAACTTGGGCCTCAAATTAGGGTCACACTAAAGCTATGTCAAGCT
CTTCTTTGTTATGGCTAGATGCTTTGCTGGTATGCCTTTGTTATGGTTGCATGCTGCTATGCTTGATTGTATG--TTTTC
TATATAGTTTAAGCGAAAACGCTAAATGGGGCTTAACTTTTGTATATGTTTTCGTAACTTTTGGATGAGCCACCAGTAAA
TGGGATAGCCTGCTATTTAAAATTTTGATAGATATACAATTGAAATGACTGAAATATTTTGACCAAAAGGTAGTACTTTG
GTATCTACAAAAATTATTGAAATTCAGCTAATTTCAACAGCATCTCACTGAAAGTGAAAACCAATGCAACCACTAGACTG
AAATCCAATGTGGCAGTATATTATGACGGACAATACCAAGATAATAGGTGTGAATACACGAAAACAGAAAAAA-CAAAAC
AAAAGAAGCCATACCTTTACTCAAGTCTTATTGAGAGCATCTTAGCGAAAAGGTTAAAATCTAGCTACGCATGCATCAAG
GAAACAAGCAAAAGTTCAACTGACCAAACAAGGCAAAGGGCGTCCGGCAAAGCCAACGCTCTAGTAATGGCGGCATTCGT
TGCCTGCAATCCATAAATACAAGTATGTATAAAGAGTCATTGTGAGTGTATACATCTGGCAGACGTGCACACATCAGTAA
TAATTAAACAGATCGAGATGAGTGGAGGTAACAATGGTTCCGGAAAGGTGGAGTGGCCGGAGCTGTTGGGCGCCCCGGCG
ACGCCGGCGGTGAGCAAGATCCGCCGGGACAGGCCGGACGTCAACGTGGTGGTGCTCCCGGACCAAACTCCGGTGCCCAT
TGGGTTCAACAGCAAGCGCGTCCGCGTCTTCTACGACTCGCAACAGCCCGGTGCACTTGTCGCCAACATCCCCATGGTCG
GCTAGCCAGCCGGCCGGACGGCGGGCACGCATATGCGTGCATTCCAGTCGATCGACAGCTGAATAATAATGCCATAGCGC
TGTCGCCCTCATGTATTGGATACGTTCCCTGTACTCGATTGCGCTGGCTCGGTTTTTGCTTATTTCAATCAATAGAAGGT
GATTGTTCTGTAAATCCTATGATGAGAAATAATCATTTATAAGTTTATCAAATTGTAAGTAAGGAATCTTATCTTCTATA
TCTAAATAGCTAACCCCCAGTAACTATTTCTCTCAACATGCAAGCATGACACATCATCACACAACATGCATGAGAAAAG-
GCCCACCCCAACTATCATATGTCTCTCGACATGCAAGCATATACCACTTCATTATGACATGCATGAAAAAAAGATCCATC
TCAACATGTAAATATACATGAGAATTTCCATTCTATTATGCTACATATATTTAATTAAAAA-GTTACCTCCCACTAACTA
TTACTCTCAACATGCAAGCATACAACATCATTGCACAACATGCATGAGAAAAGGCCCACCCTCACTATCATATGTCTCTC
AACATGCAAGCATGCCACTTCATC--------------------------------------------------------
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>chr6B_608
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------------------GAAATTCAGCTAATTTCAACAGCATCTCACTGAAAGTGAA-ACCAATGCAACCACTAGACTG
AAATCCAATGTGGCAGTATATTATGACGGACAGTACCAAGATAATTGGTGTGAATACATGAAAACGGAAAAAA-CGAAAC
AAAAGAAGCCATACCTTTACTCAAGTCTTATTGAGAGCATCTTAGCGAAAAGGTTAAAATCTAGCTACGCATGCATCAAG
GAAACAAGCAAAAGTTCAACTGACCAAACAAGGCAAAGGGCGTCCGGCAAAGCCAACGCTCTAGTAATGGCGGCATTCGT
TGCCTGCAATCCATAAATACTGGTATGTGTAAAGAGTCATTGTGAGTGTATACATCTGGCAGACGTGCACACATCAGTAA
TAATTAAACAGATCGAGATGAGCGGAGGTAACAATGGTTCCGAAAAGGTGGAGTGGCCGGAGCTGTTGGGCGTCCCGGCG
ACGCCGGCGGTGAGCAAGATCCGCCGGGACAGGCCGGACGTCAACGTGGTGGTGCTCCCGGACCAAACCCCGGTGCCCAT
TGGGTTCAACAGCAAGCGCGTACGCGTCTTCTACGATTCGCAACAGCCGGGTGCACTTGTCGCCAACATCCCCATGGTCG
GCTAGCCAGCCGGCCGGACGGCGGCCACGCATATGCGTGCATTCCGGTCGATCGACAGCTGAATAATAACGCCATAGCGC
TGTGGCCCTCATGCA-TGGATACGTTCCCTGTACTCTATTGCACTGGCTCGGTTTATGCTTATTTCAATCAGTAGAAGGT
GATTGCT---TAAGTCCTATGGTAAGAAATAA------------------------------------------------
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>SNPs
------------------------------------------S---S---------S-S-----SS-S---------S-S
---S-----S------------SS-----------------SS-----------------------------------S-
-S-------S------------------------S-S------------S---------S---------------S----
--SS-SSS---------------------------S----S-----------------S-----SSS-------------
-----------S---------------S---------------------SS----S-------S---------S-----S
S-----------S----------------------------------------------------------SSSS----S
-S-------S------------------S----------S----------------------------------------
---S------------S---SS--------SS-------S--S-------------------S---------S-------
-----S----------------------S---------------------------------------------------
-------------------------------------------------------------------------S------
--S-S-----------------------------SSSS-SSSSS-------S---S-------------S----------
---------------------------------------------------------------------S----------
---S-----------------------S-----------S----------------------------------------
--------------------------------------S-----------------------------------------
-------------------------------------------S------------S-----------------------
--------------------------------------------------SS----------------------------
-------S----------------------------------------------S-------------------------
--------------------------S----S------------------------------------------------
---------------S------S----------------S-------------------------------------S--
--------S-----S----S---------S------------------S--S----------S---------------SS
-----------S---------------S----------------------------S-S---------------------
--------S----------S-------SS-----------------------S--------S---------S--------
S------------------------------SS--S-----------------S--SS---------------------S
----S-------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_394
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------------------------------------------------------GCGTCACACCAAAGCTATGC------
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>reverse_1890
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-------------------------------------------------AACAACGTAAGGGGCGTCAT-----------
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