Multiple sequence alignment - TraesCS6A01G076800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G076800 chr6A 100.000 2334 0 0 1 2334 46974130 46971797 0.000000e+00 4311.0
1 TraesCS6A01G076800 chr6A 89.474 323 30 4 459 778 5604084 5603763 2.790000e-109 405.0
2 TraesCS6A01G076800 chr6A 88.393 336 36 3 444 777 615672877 615672543 3.610000e-108 401.0
3 TraesCS6A01G076800 chr6A 100.000 51 0 0 2149 2199 46971931 46971881 6.870000e-16 95.3
4 TraesCS6A01G076800 chr6A 100.000 51 0 0 2200 2250 46971982 46971932 6.870000e-16 95.3
5 TraesCS6A01G076800 chrUn 87.385 872 67 24 1357 2199 27022887 27023744 0.000000e+00 961.0
6 TraesCS6A01G076800 chrUn 83.053 832 89 30 1357 2151 27157358 27156542 0.000000e+00 708.0
7 TraesCS6A01G076800 chrUn 90.114 526 17 15 848 1348 27022331 27022846 0.000000e+00 651.0
8 TraesCS6A01G076800 chrUn 90.114 526 17 15 848 1348 27157914 27157399 0.000000e+00 651.0
9 TraesCS6A01G076800 chrUn 89.375 320 29 4 457 774 191788694 191789010 4.670000e-107 398.0
10 TraesCS6A01G076800 chrUn 89.375 320 29 5 457 774 343192461 343192777 4.670000e-107 398.0
11 TraesCS6A01G076800 chrUn 90.071 141 5 2 2200 2332 27023695 27023834 8.570000e-40 174.0
12 TraesCS6A01G076800 chr6B 86.949 567 29 17 799 1346 80969721 80970261 1.540000e-166 595.0
13 TraesCS6A01G076800 chr6B 90.281 391 10 10 981 1348 80961341 80961726 9.700000e-134 486.0
14 TraesCS6A01G076800 chr6B 87.234 235 27 2 1401 1632 80961825 80962059 4.950000e-67 265.0
15 TraesCS6A01G076800 chr6B 85.714 245 17 11 1395 1632 80977288 80977521 2.320000e-60 243.0
16 TraesCS6A01G076800 chr6B 92.208 77 6 0 203 279 80969424 80969500 2.450000e-20 110.0
17 TraesCS6A01G076800 chr6B 92.308 65 2 2 1976 2037 45566029 45566093 3.190000e-14 89.8
18 TraesCS6A01G076800 chr7A 89.024 328 32 3 454 780 82191752 82192076 1.000000e-108 403.0
19 TraesCS6A01G076800 chr1A 89.097 321 33 2 455 774 205392143 205391824 4.670000e-107 398.0
20 TraesCS6A01G076800 chr1A 88.785 321 34 2 455 774 189532540 189532859 2.170000e-105 392.0
21 TraesCS6A01G076800 chr5A 88.820 322 34 2 457 777 228895269 228894949 6.050000e-106 394.0
22 TraesCS6A01G076800 chr5A 87.192 203 26 0 1 203 430641598 430641800 5.020000e-57 231.0
23 TraesCS6A01G076800 chr4A 88.785 321 34 2 455 774 76168851 76168532 2.170000e-105 392.0
24 TraesCS6A01G076800 chr1B 82.713 376 43 15 988 1349 51590104 51590471 4.840000e-82 315.0
25 TraesCS6A01G076800 chr1B 81.892 370 42 19 986 1334 51299917 51300282 2.930000e-74 289.0
26 TraesCS6A01G076800 chr1B 80.952 357 49 14 992 1334 51539014 51539365 4.950000e-67 265.0
27 TraesCS6A01G076800 chr1B 80.112 357 52 14 992 1334 51546418 51546769 4.980000e-62 248.0
28 TraesCS6A01G076800 chr1B 86.500 200 27 0 4 203 326870401 326870202 1.090000e-53 220.0
29 TraesCS6A01G076800 chr1B 86.207 203 28 0 1 203 576043490 576043692 1.090000e-53 220.0
30 TraesCS6A01G076800 chr1B 100.000 32 0 0 2007 2038 648789635 648789604 2.500000e-05 60.2
31 TraesCS6A01G076800 chr1B 94.286 35 2 0 817 851 51323116 51323150 1.000000e-03 54.7
32 TraesCS6A01G076800 chr1D 81.250 384 44 23 986 1348 33663825 33664201 3.800000e-73 285.0
33 TraesCS6A01G076800 chr3B 86.700 203 26 1 1 203 118494053 118493852 8.390000e-55 224.0
34 TraesCS6A01G076800 chr3B 86.341 205 28 0 1 205 759699753 759699957 8.390000e-55 224.0
35 TraesCS6A01G076800 chr7B 86.500 200 27 0 4 203 160986434 160986235 1.090000e-53 220.0
36 TraesCS6A01G076800 chr7B 86.275 204 26 2 1 203 396333889 396334091 1.090000e-53 220.0
37 TraesCS6A01G076800 chr7B 86.500 200 27 0 4 203 714855599 714855400 1.090000e-53 220.0
38 TraesCS6A01G076800 chr5D 86.058 208 26 3 4 209 460898844 460899050 1.090000e-53 220.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G076800 chr6A 46971797 46974130 2333 True 1500.533333 4311 100.0000 1 2334 3 chr6A.!!$R3 2333
1 TraesCS6A01G076800 chrUn 27156542 27157914 1372 True 679.500000 708 86.5835 848 2151 2 chrUn.!!$R1 1303
2 TraesCS6A01G076800 chrUn 27022331 27023834 1503 False 595.333333 961 89.1900 848 2332 3 chrUn.!!$F3 1484
3 TraesCS6A01G076800 chr6B 80961341 80962059 718 False 375.500000 486 88.7575 981 1632 2 chr6B.!!$F3 651
4 TraesCS6A01G076800 chr6B 80969424 80970261 837 False 352.500000 595 89.5785 203 1346 2 chr6B.!!$F4 1143

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
229 230 0.028242 GCTGATCGACGTCGTGATCT 59.972 55.0 34.4 16.68 41.24 2.75 F
699 762 0.107831 AGGCGACAACTAAACAGGCA 59.892 50.0 0.0 0.00 0.00 4.75 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1324 1426 0.035630 CAGGGCAAAGCTAGCAGACT 60.036 55.0 18.83 3.08 0.0 3.24 R
1904 2078 0.251341 TGCAGAGAGGGCCTTTTTCC 60.251 55.0 7.89 0.00 0.0 3.13 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 7.668525 ACTTAGGTGAGTGTTTAGTTTATGC 57.331 36.000 0.00 0.00 0.00 3.14
29 30 6.653740 ACTTAGGTGAGTGTTTAGTTTATGCC 59.346 38.462 0.00 0.00 0.00 4.40
30 31 4.980573 AGGTGAGTGTTTAGTTTATGCCA 58.019 39.130 0.00 0.00 0.00 4.92
31 32 4.760204 AGGTGAGTGTTTAGTTTATGCCAC 59.240 41.667 0.00 0.00 0.00 5.01
32 33 4.517453 GGTGAGTGTTTAGTTTATGCCACA 59.483 41.667 0.00 0.00 0.00 4.17
33 34 5.449304 GTGAGTGTTTAGTTTATGCCACAC 58.551 41.667 0.00 0.00 35.74 3.82
34 35 5.238650 GTGAGTGTTTAGTTTATGCCACACT 59.761 40.000 2.48 2.48 45.82 3.55
35 36 5.825679 TGAGTGTTTAGTTTATGCCACACTT 59.174 36.000 4.37 0.00 43.76 3.16
36 37 6.320164 TGAGTGTTTAGTTTATGCCACACTTT 59.680 34.615 4.37 0.00 43.76 2.66
37 38 7.499563 TGAGTGTTTAGTTTATGCCACACTTTA 59.500 33.333 4.37 0.00 43.76 1.85
38 39 7.645402 AGTGTTTAGTTTATGCCACACTTTAC 58.355 34.615 0.00 0.00 41.60 2.01
39 40 6.575942 GTGTTTAGTTTATGCCACACTTTACG 59.424 38.462 0.00 0.00 33.28 3.18
40 41 3.824414 AGTTTATGCCACACTTTACGC 57.176 42.857 0.00 0.00 0.00 4.42
41 42 3.142951 AGTTTATGCCACACTTTACGCA 58.857 40.909 0.00 0.00 35.35 5.24
42 43 3.566322 AGTTTATGCCACACTTTACGCAA 59.434 39.130 0.00 0.00 34.38 4.85
44 45 0.240945 ATGCCACACTTTACGCAAGC 59.759 50.000 0.00 0.00 45.62 4.01
45 46 1.081442 GCCACACTTTACGCAAGCC 60.081 57.895 0.00 0.00 45.62 4.35
46 47 1.791103 GCCACACTTTACGCAAGCCA 61.791 55.000 0.00 0.00 45.62 4.75
47 48 0.881118 CCACACTTTACGCAAGCCAT 59.119 50.000 0.00 0.00 45.62 4.40
48 49 1.269448 CCACACTTTACGCAAGCCATT 59.731 47.619 0.00 0.00 45.62 3.16
49 50 2.288152 CCACACTTTACGCAAGCCATTT 60.288 45.455 0.00 0.00 45.62 2.32
50 51 3.380142 CACACTTTACGCAAGCCATTTT 58.620 40.909 0.00 0.00 45.62 1.82
51 52 3.801594 CACACTTTACGCAAGCCATTTTT 59.198 39.130 0.00 0.00 45.62 1.94
52 53 3.801594 ACACTTTACGCAAGCCATTTTTG 59.198 39.130 0.00 0.00 45.62 2.44
53 54 3.184178 CACTTTACGCAAGCCATTTTTGG 59.816 43.478 0.00 0.00 45.62 3.28
54 55 3.068873 ACTTTACGCAAGCCATTTTTGGA 59.931 39.130 0.00 0.00 45.62 3.53
55 56 3.951775 TTACGCAAGCCATTTTTGGAT 57.048 38.095 0.00 0.00 45.62 3.41
56 57 2.368655 ACGCAAGCCATTTTTGGATC 57.631 45.000 0.00 0.00 45.62 3.36
57 58 1.066929 ACGCAAGCCATTTTTGGATCC 60.067 47.619 4.20 4.20 45.62 3.36
58 59 1.740043 CGCAAGCCATTTTTGGATCCC 60.740 52.381 9.90 0.00 0.00 3.85
59 60 1.278699 GCAAGCCATTTTTGGATCCCA 59.721 47.619 9.90 0.00 0.00 4.37
60 61 2.936553 GCAAGCCATTTTTGGATCCCAC 60.937 50.000 9.90 0.00 30.78 4.61
61 62 2.302445 CAAGCCATTTTTGGATCCCACA 59.698 45.455 9.90 0.00 30.78 4.17
62 63 2.836667 AGCCATTTTTGGATCCCACAT 58.163 42.857 9.90 0.00 30.78 3.21
63 64 2.502538 AGCCATTTTTGGATCCCACATG 59.497 45.455 9.90 6.33 30.78 3.21
64 65 2.420408 GCCATTTTTGGATCCCACATGG 60.420 50.000 18.68 18.68 38.18 3.66
65 66 2.420408 CCATTTTTGGATCCCACATGGC 60.420 50.000 9.90 0.00 32.51 4.40
66 67 2.021262 TTTTTGGATCCCACATGGCA 57.979 45.000 9.90 0.00 30.78 4.92
67 68 2.250921 TTTTGGATCCCACATGGCAT 57.749 45.000 9.90 0.00 30.78 4.40
68 69 3.395054 TTTTGGATCCCACATGGCATA 57.605 42.857 9.90 0.00 30.78 3.14
69 70 2.363306 TTGGATCCCACATGGCATAC 57.637 50.000 9.90 0.00 30.78 2.39
70 71 1.220703 TGGATCCCACATGGCATACA 58.779 50.000 9.90 0.00 0.00 2.29
71 72 1.133823 TGGATCCCACATGGCATACAC 60.134 52.381 9.90 0.00 0.00 2.90
72 73 1.133823 GGATCCCACATGGCATACACA 60.134 52.381 0.00 0.00 0.00 3.72
73 74 2.489619 GGATCCCACATGGCATACACAT 60.490 50.000 0.00 0.00 0.00 3.21
74 75 3.244875 GGATCCCACATGGCATACACATA 60.245 47.826 0.00 0.00 0.00 2.29
75 76 3.941704 TCCCACATGGCATACACATAA 57.058 42.857 0.00 0.00 0.00 1.90
76 77 4.242336 TCCCACATGGCATACACATAAA 57.758 40.909 0.00 0.00 0.00 1.40
77 78 4.604156 TCCCACATGGCATACACATAAAA 58.396 39.130 0.00 0.00 0.00 1.52
78 79 5.019470 TCCCACATGGCATACACATAAAAA 58.981 37.500 0.00 0.00 0.00 1.94
104 105 7.849804 TGTGATAAGATTCCTTTAGACTTGC 57.150 36.000 0.00 0.00 33.94 4.01
105 106 6.823689 TGTGATAAGATTCCTTTAGACTTGCC 59.176 38.462 0.00 0.00 33.94 4.52
106 107 6.823689 GTGATAAGATTCCTTTAGACTTGCCA 59.176 38.462 0.00 0.00 33.94 4.92
107 108 7.336931 GTGATAAGATTCCTTTAGACTTGCCAA 59.663 37.037 0.00 0.00 33.94 4.52
108 109 5.966742 AAGATTCCTTTAGACTTGCCAAC 57.033 39.130 0.00 0.00 0.00 3.77
109 110 5.248380 AGATTCCTTTAGACTTGCCAACT 57.752 39.130 0.00 0.00 0.00 3.16
110 111 5.635120 AGATTCCTTTAGACTTGCCAACTT 58.365 37.500 0.00 0.00 0.00 2.66
111 112 5.474876 AGATTCCTTTAGACTTGCCAACTTG 59.525 40.000 0.00 0.00 0.00 3.16
112 113 4.164843 TCCTTTAGACTTGCCAACTTGT 57.835 40.909 0.00 0.00 0.00 3.16
113 114 3.882888 TCCTTTAGACTTGCCAACTTGTG 59.117 43.478 0.00 0.00 0.00 3.33
125 126 3.645884 CCAACTTGTGGCTCTCATTTTG 58.354 45.455 0.00 0.00 41.72 2.44
126 127 3.318839 CCAACTTGTGGCTCTCATTTTGA 59.681 43.478 0.00 0.00 41.72 2.69
127 128 4.021719 CCAACTTGTGGCTCTCATTTTGAT 60.022 41.667 0.00 0.00 41.72 2.57
128 129 4.778534 ACTTGTGGCTCTCATTTTGATG 57.221 40.909 0.00 0.00 0.00 3.07
129 130 4.401022 ACTTGTGGCTCTCATTTTGATGA 58.599 39.130 0.00 0.00 0.00 2.92
130 131 4.828939 ACTTGTGGCTCTCATTTTGATGAA 59.171 37.500 0.00 0.00 0.00 2.57
131 132 4.771590 TGTGGCTCTCATTTTGATGAAC 57.228 40.909 0.00 0.00 0.00 3.18
132 133 4.401022 TGTGGCTCTCATTTTGATGAACT 58.599 39.130 0.00 0.00 0.00 3.01
133 134 5.559770 TGTGGCTCTCATTTTGATGAACTA 58.440 37.500 0.00 0.00 0.00 2.24
134 135 6.003326 TGTGGCTCTCATTTTGATGAACTAA 58.997 36.000 0.00 0.00 0.00 2.24
135 136 6.072508 TGTGGCTCTCATTTTGATGAACTAAC 60.073 38.462 0.00 0.00 0.00 2.34
136 137 6.150140 GTGGCTCTCATTTTGATGAACTAACT 59.850 38.462 0.00 0.00 0.00 2.24
137 138 6.716628 TGGCTCTCATTTTGATGAACTAACTT 59.283 34.615 0.00 0.00 0.00 2.66
138 139 7.231317 TGGCTCTCATTTTGATGAACTAACTTT 59.769 33.333 0.00 0.00 0.00 2.66
139 140 8.730680 GGCTCTCATTTTGATGAACTAACTTTA 58.269 33.333 0.00 0.00 0.00 1.85
140 141 9.766277 GCTCTCATTTTGATGAACTAACTTTAG 57.234 33.333 0.00 0.00 36.82 1.85
146 147 9.899226 ATTTTGATGAACTAACTTTAGACAAGC 57.101 29.630 2.95 2.06 34.84 4.01
147 148 8.677148 TTTGATGAACTAACTTTAGACAAGCT 57.323 30.769 2.95 0.00 34.84 3.74
148 149 8.677148 TTGATGAACTAACTTTAGACAAGCTT 57.323 30.769 0.00 0.00 34.84 3.74
149 150 8.087982 TGATGAACTAACTTTAGACAAGCTTG 57.912 34.615 24.84 24.84 34.84 4.01
150 151 7.931407 TGATGAACTAACTTTAGACAAGCTTGA 59.069 33.333 32.50 7.93 34.84 3.02
151 152 7.478520 TGAACTAACTTTAGACAAGCTTGAC 57.521 36.000 32.50 25.68 34.84 3.18
152 153 7.045416 TGAACTAACTTTAGACAAGCTTGACA 58.955 34.615 32.50 13.67 34.84 3.58
153 154 7.551262 TGAACTAACTTTAGACAAGCTTGACAA 59.449 33.333 32.50 18.42 34.84 3.18
154 155 7.859325 ACTAACTTTAGACAAGCTTGACAAA 57.141 32.000 32.50 23.26 34.84 2.83
155 156 8.276252 ACTAACTTTAGACAAGCTTGACAAAA 57.724 30.769 32.50 23.22 34.84 2.44
156 157 8.736244 ACTAACTTTAGACAAGCTTGACAAAAA 58.264 29.630 32.50 24.61 34.84 1.94
157 158 9.736023 CTAACTTTAGACAAGCTTGACAAAAAT 57.264 29.630 32.50 15.03 32.47 1.82
160 161 9.683069 ACTTTAGACAAGCTTGACAAAAATATG 57.317 29.630 32.50 18.15 0.00 1.78
161 162 9.683069 CTTTAGACAAGCTTGACAAAAATATGT 57.317 29.630 32.50 6.19 35.90 2.29
162 163 9.462174 TTTAGACAAGCTTGACAAAAATATGTG 57.538 29.630 32.50 1.76 32.57 3.21
163 164 7.275888 AGACAAGCTTGACAAAAATATGTGA 57.724 32.000 32.50 0.00 32.57 3.58
164 165 7.889469 AGACAAGCTTGACAAAAATATGTGAT 58.111 30.769 32.50 4.02 32.57 3.06
165 166 9.013229 AGACAAGCTTGACAAAAATATGTGATA 57.987 29.630 32.50 0.00 32.57 2.15
166 167 9.624697 GACAAGCTTGACAAAAATATGTGATAA 57.375 29.630 32.50 0.00 32.57 1.75
167 168 9.630098 ACAAGCTTGACAAAAATATGTGATAAG 57.370 29.630 32.50 0.00 32.57 1.73
168 169 9.844790 CAAGCTTGACAAAAATATGTGATAAGA 57.155 29.630 22.31 0.00 32.57 2.10
179 180 9.865321 AAAATATGTGATAAGATATGGCAATGC 57.135 29.630 0.00 0.00 0.00 3.56
180 181 8.818622 AATATGTGATAAGATATGGCAATGCT 57.181 30.769 4.82 0.00 0.00 3.79
181 182 8.818622 ATATGTGATAAGATATGGCAATGCTT 57.181 30.769 4.82 0.00 0.00 3.91
182 183 6.321848 TGTGATAAGATATGGCAATGCTTG 57.678 37.500 4.82 0.00 0.00 4.01
183 184 5.829391 TGTGATAAGATATGGCAATGCTTGT 59.171 36.000 4.82 0.00 0.00 3.16
184 185 6.016860 TGTGATAAGATATGGCAATGCTTGTC 60.017 38.462 4.82 12.81 35.37 3.18
185 186 5.474532 TGATAAGATATGGCAATGCTTGTCC 59.525 40.000 4.82 0.00 33.37 4.02
186 187 3.589951 AGATATGGCAATGCTTGTCCT 57.410 42.857 4.82 0.00 33.37 3.85
187 188 4.712051 AGATATGGCAATGCTTGTCCTA 57.288 40.909 4.82 0.00 33.37 2.94
188 189 5.252586 AGATATGGCAATGCTTGTCCTAT 57.747 39.130 4.82 0.00 33.37 2.57
189 190 6.378661 AGATATGGCAATGCTTGTCCTATA 57.621 37.500 4.82 0.00 33.37 1.31
190 191 6.782986 AGATATGGCAATGCTTGTCCTATAA 58.217 36.000 4.82 0.00 33.37 0.98
191 192 6.656693 AGATATGGCAATGCTTGTCCTATAAC 59.343 38.462 4.82 0.00 33.37 1.89
192 193 3.287222 TGGCAATGCTTGTCCTATAACC 58.713 45.455 4.82 0.00 33.37 2.85
193 194 3.287222 GGCAATGCTTGTCCTATAACCA 58.713 45.455 4.82 0.00 0.00 3.67
194 195 3.699038 GGCAATGCTTGTCCTATAACCAA 59.301 43.478 4.82 0.00 0.00 3.67
195 196 4.159506 GGCAATGCTTGTCCTATAACCAAA 59.840 41.667 4.82 0.00 0.00 3.28
196 197 5.102313 GCAATGCTTGTCCTATAACCAAAC 58.898 41.667 0.00 0.00 0.00 2.93
197 198 5.336372 GCAATGCTTGTCCTATAACCAAACA 60.336 40.000 0.00 0.00 0.00 2.83
198 199 6.686630 CAATGCTTGTCCTATAACCAAACAA 58.313 36.000 0.00 0.00 0.00 2.83
199 200 5.699097 TGCTTGTCCTATAACCAAACAAC 57.301 39.130 0.00 0.00 0.00 3.32
200 201 4.521256 TGCTTGTCCTATAACCAAACAACC 59.479 41.667 0.00 0.00 0.00 3.77
201 202 4.082408 GCTTGTCCTATAACCAAACAACCC 60.082 45.833 0.00 0.00 0.00 4.11
209 210 0.464916 ACCAAACAACCCCACGTCTC 60.465 55.000 0.00 0.00 0.00 3.36
212 213 2.319890 AAACAACCCCACGTCTCGCT 62.320 55.000 0.00 0.00 0.00 4.93
229 230 0.028242 GCTGATCGACGTCGTGATCT 59.972 55.000 34.40 16.68 41.24 2.75
285 310 4.403113 TCGGCATGTGTAGGTACTGAAATA 59.597 41.667 0.00 0.00 41.52 1.40
295 320 6.893554 TGTAGGTACTGAAATAACTAGGCAGA 59.106 38.462 0.00 0.00 41.52 4.26
316 342 3.958147 GACAGGGAAAAAGTTGGGAGAAA 59.042 43.478 0.00 0.00 0.00 2.52
317 343 3.960755 ACAGGGAAAAAGTTGGGAGAAAG 59.039 43.478 0.00 0.00 0.00 2.62
336 362 5.831525 AGAAAGCAATCATTCCAGCATATGA 59.168 36.000 6.97 0.00 35.43 2.15
346 372 1.215244 CAGCATATGACAGGCTCGTG 58.785 55.000 6.97 0.00 41.38 4.35
347 373 1.114627 AGCATATGACAGGCTCGTGA 58.885 50.000 6.97 0.00 41.38 4.35
348 374 1.690893 AGCATATGACAGGCTCGTGAT 59.309 47.619 6.97 0.00 41.38 3.06
349 375 2.064762 GCATATGACAGGCTCGTGATC 58.935 52.381 6.97 0.00 0.00 2.92
350 376 2.546584 GCATATGACAGGCTCGTGATCA 60.547 50.000 6.97 0.00 0.00 2.92
351 377 3.863780 GCATATGACAGGCTCGTGATCAT 60.864 47.826 6.97 5.20 34.48 2.45
352 378 2.235845 ATGACAGGCTCGTGATCATG 57.764 50.000 8.74 8.74 0.00 3.07
353 379 1.185315 TGACAGGCTCGTGATCATGA 58.815 50.000 16.66 16.66 0.00 3.07
354 380 1.135721 TGACAGGCTCGTGATCATGAG 59.864 52.381 32.16 32.16 45.04 2.90
355 381 1.135915 GACAGGCTCGTGATCATGAGT 59.864 52.381 34.51 22.00 44.30 3.41
356 382 1.552337 ACAGGCTCGTGATCATGAGTT 59.448 47.619 34.51 24.46 44.30 3.01
357 383 2.027745 ACAGGCTCGTGATCATGAGTTT 60.028 45.455 34.51 24.18 44.30 2.66
358 384 3.005554 CAGGCTCGTGATCATGAGTTTT 58.994 45.455 34.51 22.24 44.30 2.43
359 385 3.005554 AGGCTCGTGATCATGAGTTTTG 58.994 45.455 34.51 18.17 44.30 2.44
360 386 2.476854 GGCTCGTGATCATGAGTTTTGC 60.477 50.000 34.51 24.81 44.30 3.68
361 387 2.785681 GCTCGTGATCATGAGTTTTGCG 60.786 50.000 34.51 16.97 44.30 4.85
362 388 2.412870 TCGTGATCATGAGTTTTGCGT 58.587 42.857 13.75 0.00 0.00 5.24
363 389 2.411748 TCGTGATCATGAGTTTTGCGTC 59.588 45.455 13.75 0.00 0.00 5.19
364 390 2.413112 CGTGATCATGAGTTTTGCGTCT 59.587 45.455 9.46 0.00 0.00 4.18
368 394 2.143122 TCATGAGTTTTGCGTCTGACC 58.857 47.619 1.55 0.00 0.00 4.02
389 441 4.528206 ACCTTGATGGGAAATTCCTTCAAC 59.472 41.667 19.51 8.49 42.37 3.18
430 493 2.052690 GCCTGAGTAGCCCGTGAGA 61.053 63.158 0.00 0.00 0.00 3.27
442 505 1.029681 CCGTGAGATACCGATGTGGA 58.970 55.000 0.00 0.00 42.00 4.02
443 506 1.001268 CCGTGAGATACCGATGTGGAG 60.001 57.143 0.00 0.00 42.00 3.86
444 507 1.676529 CGTGAGATACCGATGTGGAGT 59.323 52.381 0.00 0.00 42.00 3.85
445 508 2.541794 CGTGAGATACCGATGTGGAGTG 60.542 54.545 0.00 0.00 42.00 3.51
447 510 2.427095 TGAGATACCGATGTGGAGTGTG 59.573 50.000 0.00 0.00 42.00 3.82
448 511 2.688446 GAGATACCGATGTGGAGTGTGA 59.312 50.000 0.00 0.00 42.00 3.58
449 512 2.690497 AGATACCGATGTGGAGTGTGAG 59.310 50.000 0.00 0.00 42.00 3.51
451 514 1.293179 CCGATGTGGAGTGTGAGCA 59.707 57.895 0.00 0.00 42.00 4.26
452 515 0.107993 CCGATGTGGAGTGTGAGCAT 60.108 55.000 0.00 0.00 42.00 3.79
453 516 1.284657 CGATGTGGAGTGTGAGCATC 58.715 55.000 0.00 0.00 34.34 3.91
454 517 4.617603 CCGATGTGGAGTGTGAGCATCA 62.618 54.545 0.00 0.00 42.28 3.07
464 527 3.012153 TGAGCATCAGTAAGGCCCT 57.988 52.632 0.00 0.00 42.56 5.19
465 528 0.543277 TGAGCATCAGTAAGGCCCTG 59.457 55.000 0.00 0.00 42.56 4.45
466 529 0.543749 GAGCATCAGTAAGGCCCTGT 59.456 55.000 0.00 0.00 33.17 4.00
467 530 0.995024 AGCATCAGTAAGGCCCTGTT 59.005 50.000 0.00 0.00 0.00 3.16
468 531 1.355720 AGCATCAGTAAGGCCCTGTTT 59.644 47.619 0.00 0.00 0.00 2.83
469 532 2.576191 AGCATCAGTAAGGCCCTGTTTA 59.424 45.455 0.00 0.00 0.00 2.01
470 533 2.945668 GCATCAGTAAGGCCCTGTTTAG 59.054 50.000 0.00 0.00 0.00 1.85
471 534 3.622455 GCATCAGTAAGGCCCTGTTTAGT 60.622 47.826 0.00 0.00 0.00 2.24
472 535 4.589908 CATCAGTAAGGCCCTGTTTAGTT 58.410 43.478 0.00 0.00 0.00 2.24
473 536 4.717279 TCAGTAAGGCCCTGTTTAGTTT 57.283 40.909 0.00 0.00 0.00 2.66
474 537 4.648651 TCAGTAAGGCCCTGTTTAGTTTC 58.351 43.478 0.00 0.00 0.00 2.78
475 538 4.103469 TCAGTAAGGCCCTGTTTAGTTTCA 59.897 41.667 0.00 0.00 0.00 2.69
476 539 4.825085 CAGTAAGGCCCTGTTTAGTTTCAA 59.175 41.667 0.00 0.00 0.00 2.69
477 540 5.300792 CAGTAAGGCCCTGTTTAGTTTCAAA 59.699 40.000 0.00 0.00 0.00 2.69
478 541 6.015434 CAGTAAGGCCCTGTTTAGTTTCAAAT 60.015 38.462 0.00 0.00 0.00 2.32
479 542 7.175990 CAGTAAGGCCCTGTTTAGTTTCAAATA 59.824 37.037 0.00 0.00 0.00 1.40
480 543 6.987403 AAGGCCCTGTTTAGTTTCAAATAA 57.013 33.333 0.00 0.00 0.00 1.40
481 544 6.590234 AGGCCCTGTTTAGTTTCAAATAAG 57.410 37.500 0.00 0.00 0.00 1.73
482 545 6.075315 AGGCCCTGTTTAGTTTCAAATAAGT 58.925 36.000 0.00 0.00 0.00 2.24
483 546 6.208797 AGGCCCTGTTTAGTTTCAAATAAGTC 59.791 38.462 0.00 0.00 0.00 3.01
484 547 6.015772 GGCCCTGTTTAGTTTCAAATAAGTCA 60.016 38.462 0.00 0.00 0.00 3.41
485 548 6.861572 GCCCTGTTTAGTTTCAAATAAGTCAC 59.138 38.462 0.00 0.00 0.00 3.67
486 549 7.368059 CCCTGTTTAGTTTCAAATAAGTCACC 58.632 38.462 0.00 0.00 0.00 4.02
487 550 7.013846 CCCTGTTTAGTTTCAAATAAGTCACCA 59.986 37.037 0.00 0.00 0.00 4.17
488 551 8.410141 CCTGTTTAGTTTCAAATAAGTCACCAA 58.590 33.333 0.00 0.00 0.00 3.67
489 552 9.233232 CTGTTTAGTTTCAAATAAGTCACCAAC 57.767 33.333 0.00 0.00 0.00 3.77
490 553 8.962679 TGTTTAGTTTCAAATAAGTCACCAACT 58.037 29.630 0.00 0.00 41.10 3.16
504 567 8.441312 AAGTCACCAACTTATAAGTCGAAAAA 57.559 30.769 18.28 1.23 46.55 1.94
505 568 8.617290 AGTCACCAACTTATAAGTCGAAAAAT 57.383 30.769 18.28 0.00 38.57 1.82
506 569 8.504005 AGTCACCAACTTATAAGTCGAAAAATG 58.496 33.333 18.28 10.70 38.57 2.32
507 570 7.270579 GTCACCAACTTATAAGTCGAAAAATGC 59.729 37.037 18.28 1.49 38.57 3.56
508 571 7.041030 TCACCAACTTATAAGTCGAAAAATGCA 60.041 33.333 18.28 0.00 38.57 3.96
509 572 7.593273 CACCAACTTATAAGTCGAAAAATGCAA 59.407 33.333 18.28 0.00 38.57 4.08
510 573 8.138712 ACCAACTTATAAGTCGAAAAATGCAAA 58.861 29.630 18.28 0.00 38.57 3.68
511 574 8.973378 CCAACTTATAAGTCGAAAAATGCAAAA 58.027 29.630 18.28 0.00 38.57 2.44
555 618 9.670442 AATAGACCTAACTTATAAGTCATCCCA 57.330 33.333 18.28 2.95 38.57 4.37
556 619 7.989947 AGACCTAACTTATAAGTCATCCCAA 57.010 36.000 18.28 0.00 38.57 4.12
557 620 7.793036 AGACCTAACTTATAAGTCATCCCAAC 58.207 38.462 18.28 6.31 38.57 3.77
558 621 7.624077 AGACCTAACTTATAAGTCATCCCAACT 59.376 37.037 18.28 8.16 38.57 3.16
559 622 8.159229 ACCTAACTTATAAGTCATCCCAACTT 57.841 34.615 18.28 1.87 38.57 2.66
560 623 9.275572 ACCTAACTTATAAGTCATCCCAACTTA 57.724 33.333 18.28 2.92 41.91 2.24
582 645 7.859325 TTATAAGTCATAAGTTGCTTCACCC 57.141 36.000 0.00 0.00 0.00 4.61
583 646 3.073274 AGTCATAAGTTGCTTCACCCC 57.927 47.619 0.00 0.00 0.00 4.95
584 647 2.375174 AGTCATAAGTTGCTTCACCCCA 59.625 45.455 0.00 0.00 0.00 4.96
585 648 3.153919 GTCATAAGTTGCTTCACCCCAA 58.846 45.455 0.00 0.00 0.00 4.12
586 649 3.057526 GTCATAAGTTGCTTCACCCCAAC 60.058 47.826 0.00 0.00 41.13 3.77
588 651 3.924576 AGTTGCTTCACCCCAACTT 57.075 47.368 0.56 0.00 46.86 2.66
590 653 3.306472 AGTTGCTTCACCCCAACTTAA 57.694 42.857 0.56 0.00 46.86 1.85
591 654 3.637769 AGTTGCTTCACCCCAACTTAAA 58.362 40.909 0.56 0.00 46.86 1.52
592 655 4.027437 AGTTGCTTCACCCCAACTTAAAA 58.973 39.130 0.56 0.00 46.86 1.52
593 656 4.116961 GTTGCTTCACCCCAACTTAAAAC 58.883 43.478 0.00 0.00 38.55 2.43
594 657 3.637769 TGCTTCACCCCAACTTAAAACT 58.362 40.909 0.00 0.00 0.00 2.66
595 658 4.027437 TGCTTCACCCCAACTTAAAACTT 58.973 39.130 0.00 0.00 0.00 2.66
596 659 5.202004 TGCTTCACCCCAACTTAAAACTTA 58.798 37.500 0.00 0.00 0.00 2.24
597 660 5.836358 TGCTTCACCCCAACTTAAAACTTAT 59.164 36.000 0.00 0.00 0.00 1.73
598 661 7.005296 TGCTTCACCCCAACTTAAAACTTATA 58.995 34.615 0.00 0.00 0.00 0.98
599 662 7.506261 TGCTTCACCCCAACTTAAAACTTATAA 59.494 33.333 0.00 0.00 0.00 0.98
600 663 8.027189 GCTTCACCCCAACTTAAAACTTATAAG 58.973 37.037 11.05 11.05 36.62 1.73
601 664 8.999905 TTCACCCCAACTTAAAACTTATAAGT 57.000 30.769 12.50 12.50 43.57 2.24
602 665 8.625786 TCACCCCAACTTAAAACTTATAAGTC 57.374 34.615 18.28 0.00 41.49 3.01
603 666 8.219178 TCACCCCAACTTAAAACTTATAAGTCA 58.781 33.333 18.28 4.72 41.49 3.41
604 667 9.020731 CACCCCAACTTAAAACTTATAAGTCAT 57.979 33.333 18.28 12.34 41.49 3.06
605 668 9.239551 ACCCCAACTTAAAACTTATAAGTCATC 57.760 33.333 18.28 0.00 41.49 2.92
606 669 8.395633 CCCCAACTTAAAACTTATAAGTCATCG 58.604 37.037 18.28 8.90 41.49 3.84
607 670 7.908601 CCCAACTTAAAACTTATAAGTCATCGC 59.091 37.037 18.28 0.00 41.49 4.58
608 671 7.908601 CCAACTTAAAACTTATAAGTCATCGCC 59.091 37.037 18.28 0.00 41.49 5.54
609 672 8.665685 CAACTTAAAACTTATAAGTCATCGCCT 58.334 33.333 18.28 0.00 41.49 5.52
610 673 8.788325 ACTTAAAACTTATAAGTCATCGCCTT 57.212 30.769 18.28 4.77 38.85 4.35
611 674 9.227777 ACTTAAAACTTATAAGTCATCGCCTTT 57.772 29.630 18.28 14.40 38.85 3.11
615 678 8.556213 AAACTTATAAGTCATCGCCTTTTACA 57.444 30.769 18.28 0.00 38.57 2.41
616 679 8.732746 AACTTATAAGTCATCGCCTTTTACAT 57.267 30.769 18.28 0.00 38.57 2.29
617 680 8.142994 ACTTATAAGTCATCGCCTTTTACATG 57.857 34.615 12.50 0.00 32.86 3.21
618 681 7.226720 ACTTATAAGTCATCGCCTTTTACATGG 59.773 37.037 12.50 0.00 32.86 3.66
619 682 2.643551 AGTCATCGCCTTTTACATGGG 58.356 47.619 0.00 0.00 0.00 4.00
620 683 2.026262 AGTCATCGCCTTTTACATGGGT 60.026 45.455 0.00 0.00 0.00 4.51
621 684 2.354821 GTCATCGCCTTTTACATGGGTC 59.645 50.000 0.00 0.00 0.00 4.46
622 685 1.676006 CATCGCCTTTTACATGGGTCC 59.324 52.381 0.00 0.00 0.00 4.46
623 686 0.693622 TCGCCTTTTACATGGGTCCA 59.306 50.000 0.00 0.00 0.00 4.02
624 687 1.283613 TCGCCTTTTACATGGGTCCAT 59.716 47.619 0.00 0.00 37.08 3.41
625 688 1.676006 CGCCTTTTACATGGGTCCATC 59.324 52.381 0.00 0.00 33.90 3.51
626 689 2.733956 GCCTTTTACATGGGTCCATCA 58.266 47.619 0.00 0.00 33.90 3.07
627 690 3.299503 GCCTTTTACATGGGTCCATCAT 58.700 45.455 0.00 0.00 33.90 2.45
628 691 3.319122 GCCTTTTACATGGGTCCATCATC 59.681 47.826 0.00 0.00 33.90 2.92
629 692 4.796606 CCTTTTACATGGGTCCATCATCT 58.203 43.478 0.00 0.00 33.90 2.90
630 693 5.203528 CCTTTTACATGGGTCCATCATCTT 58.796 41.667 0.00 0.00 33.90 2.40
631 694 5.658190 CCTTTTACATGGGTCCATCATCTTT 59.342 40.000 0.00 0.00 33.90 2.52
632 695 6.833416 CCTTTTACATGGGTCCATCATCTTTA 59.167 38.462 0.00 0.00 33.90 1.85
633 696 7.201821 CCTTTTACATGGGTCCATCATCTTTAC 60.202 40.741 0.00 0.00 33.90 2.01
634 697 4.860802 ACATGGGTCCATCATCTTTACA 57.139 40.909 0.00 0.00 33.90 2.41
635 698 5.393068 ACATGGGTCCATCATCTTTACAT 57.607 39.130 0.00 0.00 33.90 2.29
636 699 5.769835 ACATGGGTCCATCATCTTTACATT 58.230 37.500 0.00 0.00 33.90 2.71
637 700 6.910191 ACATGGGTCCATCATCTTTACATTA 58.090 36.000 0.00 0.00 33.90 1.90
638 701 7.353525 ACATGGGTCCATCATCTTTACATTAA 58.646 34.615 0.00 0.00 33.90 1.40
639 702 7.838696 ACATGGGTCCATCATCTTTACATTAAA 59.161 33.333 0.00 0.00 33.90 1.52
640 703 8.694540 CATGGGTCCATCATCTTTACATTAAAA 58.305 33.333 0.00 0.00 33.90 1.52
641 704 8.657387 TGGGTCCATCATCTTTACATTAAAAA 57.343 30.769 0.00 0.00 0.00 1.94
666 729 8.702163 AAACAAAGTAGAAAAATGTGTTCAGG 57.298 30.769 0.00 0.00 0.00 3.86
667 730 7.404671 ACAAAGTAGAAAAATGTGTTCAGGT 57.595 32.000 0.00 0.00 0.00 4.00
668 731 7.257722 ACAAAGTAGAAAAATGTGTTCAGGTG 58.742 34.615 0.00 0.00 0.00 4.00
669 732 7.122055 ACAAAGTAGAAAAATGTGTTCAGGTGA 59.878 33.333 0.00 0.00 0.00 4.02
670 733 6.619801 AGTAGAAAAATGTGTTCAGGTGAC 57.380 37.500 0.00 0.00 0.00 3.67
671 734 6.357367 AGTAGAAAAATGTGTTCAGGTGACT 58.643 36.000 0.00 0.00 46.44 3.41
672 735 6.828785 AGTAGAAAAATGTGTTCAGGTGACTT 59.171 34.615 0.00 0.00 40.21 3.01
673 736 7.990886 AGTAGAAAAATGTGTTCAGGTGACTTA 59.009 33.333 0.00 0.00 40.21 2.24
674 737 7.823745 AGAAAAATGTGTTCAGGTGACTTAT 57.176 32.000 0.00 0.00 40.21 1.73
675 738 8.918202 AGAAAAATGTGTTCAGGTGACTTATA 57.082 30.769 0.00 0.00 40.21 0.98
676 739 9.349713 AGAAAAATGTGTTCAGGTGACTTATAA 57.650 29.630 0.00 0.00 40.21 0.98
677 740 9.612620 GAAAAATGTGTTCAGGTGACTTATAAG 57.387 33.333 11.05 11.05 40.21 1.73
678 741 8.691661 AAAATGTGTTCAGGTGACTTATAAGT 57.308 30.769 18.05 18.05 43.16 2.24
690 753 4.803098 ACTTATAAGTCAGGCGACAACT 57.197 40.909 12.50 0.00 45.23 3.16
691 754 5.909621 ACTTATAAGTCAGGCGACAACTA 57.090 39.130 12.50 2.06 45.23 2.24
692 755 6.276832 ACTTATAAGTCAGGCGACAACTAA 57.723 37.500 12.50 5.45 45.23 2.24
693 756 6.694447 ACTTATAAGTCAGGCGACAACTAAA 58.306 36.000 12.50 0.00 45.23 1.85
694 757 6.589139 ACTTATAAGTCAGGCGACAACTAAAC 59.411 38.462 12.50 0.00 45.23 2.01
695 758 2.902705 AGTCAGGCGACAACTAAACA 57.097 45.000 11.04 0.00 45.23 2.83
696 759 2.755650 AGTCAGGCGACAACTAAACAG 58.244 47.619 11.04 0.00 45.23 3.16
697 760 1.798813 GTCAGGCGACAACTAAACAGG 59.201 52.381 0.00 0.00 42.13 4.00
698 761 0.517316 CAGGCGACAACTAAACAGGC 59.483 55.000 0.00 0.00 0.00 4.85
699 762 0.107831 AGGCGACAACTAAACAGGCA 59.892 50.000 0.00 0.00 0.00 4.75
700 763 1.165270 GGCGACAACTAAACAGGCAT 58.835 50.000 0.00 0.00 0.00 4.40
701 764 1.135689 GGCGACAACTAAACAGGCATG 60.136 52.381 0.00 0.00 0.00 4.06
702 765 1.804151 GCGACAACTAAACAGGCATGA 59.196 47.619 4.84 0.00 0.00 3.07
703 766 2.412847 GCGACAACTAAACAGGCATGAC 60.413 50.000 4.84 0.00 0.00 3.06
704 767 3.067106 CGACAACTAAACAGGCATGACT 58.933 45.455 4.84 0.00 0.00 3.41
705 768 3.498397 CGACAACTAAACAGGCATGACTT 59.502 43.478 4.84 0.08 0.00 3.01
706 769 4.688879 CGACAACTAAACAGGCATGACTTA 59.311 41.667 4.84 1.40 0.00 2.24
707 770 5.351465 CGACAACTAAACAGGCATGACTTAT 59.649 40.000 4.84 0.00 0.00 1.73
708 771 6.533723 CGACAACTAAACAGGCATGACTTATA 59.466 38.462 4.84 0.00 0.00 0.98
709 772 7.064134 CGACAACTAAACAGGCATGACTTATAA 59.936 37.037 4.84 0.00 0.00 0.98
710 773 8.268850 ACAACTAAACAGGCATGACTTATAAG 57.731 34.615 4.84 11.05 0.00 1.73
711 774 7.883311 ACAACTAAACAGGCATGACTTATAAGT 59.117 33.333 18.05 18.05 43.16 2.24
731 794 6.867662 AAGTCACTGGTTTTAAGTCATCTG 57.132 37.500 0.00 0.00 0.00 2.90
732 795 6.174720 AGTCACTGGTTTTAAGTCATCTGA 57.825 37.500 0.00 0.00 0.00 3.27
733 796 5.992217 AGTCACTGGTTTTAAGTCATCTGAC 59.008 40.000 2.01 2.01 45.08 3.51
768 831 7.573968 AGTGACTTATTGGAATCAAATAGGC 57.426 36.000 0.02 0.00 36.36 3.93
769 832 6.547510 AGTGACTTATTGGAATCAAATAGGCC 59.452 38.462 0.00 0.00 36.36 5.19
770 833 5.530915 TGACTTATTGGAATCAAATAGGCCG 59.469 40.000 0.00 0.00 36.36 6.13
771 834 5.445964 ACTTATTGGAATCAAATAGGCCGT 58.554 37.500 0.00 0.00 36.36 5.68
772 835 6.597562 ACTTATTGGAATCAAATAGGCCGTA 58.402 36.000 0.00 0.00 36.36 4.02
773 836 7.057894 ACTTATTGGAATCAAATAGGCCGTAA 58.942 34.615 0.00 0.00 36.36 3.18
774 837 7.228706 ACTTATTGGAATCAAATAGGCCGTAAG 59.771 37.037 0.00 0.00 36.36 2.34
775 838 4.497291 TGGAATCAAATAGGCCGTAAGT 57.503 40.909 0.00 0.00 0.00 2.24
776 839 4.850680 TGGAATCAAATAGGCCGTAAGTT 58.149 39.130 0.00 0.00 0.00 2.66
777 840 5.991861 TGGAATCAAATAGGCCGTAAGTTA 58.008 37.500 0.00 0.00 0.00 2.24
778 841 6.416415 TGGAATCAAATAGGCCGTAAGTTAA 58.584 36.000 0.00 0.00 0.00 2.01
779 842 7.057894 TGGAATCAAATAGGCCGTAAGTTAAT 58.942 34.615 0.00 0.00 0.00 1.40
780 843 7.227910 TGGAATCAAATAGGCCGTAAGTTAATC 59.772 37.037 0.00 0.00 0.00 1.75
781 844 7.308408 GGAATCAAATAGGCCGTAAGTTAATCC 60.308 40.741 0.00 0.00 0.00 3.01
782 845 5.991861 TCAAATAGGCCGTAAGTTAATCCA 58.008 37.500 0.00 0.00 0.00 3.41
783 846 6.053005 TCAAATAGGCCGTAAGTTAATCCAG 58.947 40.000 0.00 0.00 0.00 3.86
784 847 2.327200 AGGCCGTAAGTTAATCCAGC 57.673 50.000 0.00 0.00 0.00 4.85
785 848 1.134189 AGGCCGTAAGTTAATCCAGCC 60.134 52.381 0.00 0.00 39.49 4.85
786 849 1.306148 GCCGTAAGTTAATCCAGCCC 58.694 55.000 0.00 0.00 0.00 5.19
787 850 1.578583 CCGTAAGTTAATCCAGCCCG 58.421 55.000 0.00 0.00 0.00 6.13
788 851 1.134610 CCGTAAGTTAATCCAGCCCGT 60.135 52.381 0.00 0.00 0.00 5.28
789 852 1.931172 CGTAAGTTAATCCAGCCCGTG 59.069 52.381 0.00 0.00 0.00 4.94
790 853 2.417651 CGTAAGTTAATCCAGCCCGTGA 60.418 50.000 0.00 0.00 0.00 4.35
791 854 2.403252 AAGTTAATCCAGCCCGTGAG 57.597 50.000 0.00 0.00 0.00 3.51
805 868 1.217779 GTGAGGCCACTCTCTGCTC 59.782 63.158 5.01 0.00 44.29 4.26
813 876 1.554160 CCACTCTCTGCTCCTGTGAAT 59.446 52.381 0.00 0.00 0.00 2.57
814 877 2.619147 CACTCTCTGCTCCTGTGAATG 58.381 52.381 0.00 0.00 0.00 2.67
815 878 1.066286 ACTCTCTGCTCCTGTGAATGC 60.066 52.381 0.00 0.00 0.00 3.56
839 902 1.601166 AAGCCCACGACTTAAACACC 58.399 50.000 0.00 0.00 0.00 4.16
840 903 0.250597 AGCCCACGACTTAAACACCC 60.251 55.000 0.00 0.00 0.00 4.61
841 904 0.535553 GCCCACGACTTAAACACCCA 60.536 55.000 0.00 0.00 0.00 4.51
842 905 1.232119 CCCACGACTTAAACACCCAC 58.768 55.000 0.00 0.00 0.00 4.61
843 906 1.475392 CCCACGACTTAAACACCCACA 60.475 52.381 0.00 0.00 0.00 4.17
844 907 1.600485 CCACGACTTAAACACCCACAC 59.400 52.381 0.00 0.00 0.00 3.82
876 939 3.518998 TCGCTCTGCTCCGCCTAC 61.519 66.667 0.00 0.00 0.00 3.18
877 940 3.522731 CGCTCTGCTCCGCCTACT 61.523 66.667 0.00 0.00 0.00 2.57
878 941 2.187493 CGCTCTGCTCCGCCTACTA 61.187 63.158 0.00 0.00 0.00 1.82
889 952 4.730657 CTCCGCCTACTATATAAACCACG 58.269 47.826 0.00 0.00 0.00 4.94
961 1037 2.600867 GCTTCGCTAGCTCTTTACACAG 59.399 50.000 13.93 0.00 46.77 3.66
971 1047 0.391263 CTTTACACAGAGTCCCCCGC 60.391 60.000 0.00 0.00 0.00 6.13
1041 1118 3.483869 GCATCCGCCCTCCTCCTT 61.484 66.667 0.00 0.00 0.00 3.36
1157 1259 1.528542 CTGCATGCAGAGATGGGGG 60.529 63.158 38.90 12.55 46.30 5.40
1336 1438 1.898472 TGCAAGAGAGTCTGCTAGCTT 59.102 47.619 17.23 0.00 0.00 3.74
1348 1450 1.219124 CTAGCTTTGCCCTGCTCGA 59.781 57.895 0.00 0.00 40.35 4.04
1349 1451 0.179062 CTAGCTTTGCCCTGCTCGAT 60.179 55.000 0.00 0.00 40.35 3.59
1350 1452 0.462581 TAGCTTTGCCCTGCTCGATG 60.463 55.000 0.00 0.00 40.35 3.84
1352 1454 1.748122 CTTTGCCCTGCTCGATGCT 60.748 57.895 8.07 0.00 43.37 3.79
1353 1455 0.462581 CTTTGCCCTGCTCGATGCTA 60.463 55.000 8.07 0.00 43.37 3.49
1354 1456 0.744414 TTTGCCCTGCTCGATGCTAC 60.744 55.000 8.07 0.00 43.37 3.58
1374 1514 2.628657 ACCTACGGTTGCTAGATCATCC 59.371 50.000 0.00 0.00 27.29 3.51
1375 1515 2.028930 CCTACGGTTGCTAGATCATCCC 60.029 54.545 0.00 0.00 0.00 3.85
1376 1516 0.389391 ACGGTTGCTAGATCATCCCG 59.611 55.000 0.00 1.01 37.08 5.14
1378 1518 0.946221 GGTTGCTAGATCATCCCGCG 60.946 60.000 0.00 0.00 0.00 6.46
1379 1519 1.300931 TTGCTAGATCATCCCGCGC 60.301 57.895 0.00 0.00 0.00 6.86
1380 1520 2.433318 GCTAGATCATCCCGCGCC 60.433 66.667 0.00 0.00 0.00 6.53
1381 1521 2.126307 CTAGATCATCCCGCGCCG 60.126 66.667 0.00 0.00 0.00 6.46
1384 1524 3.986006 GATCATCCCGCGCCGGTA 61.986 66.667 14.57 0.12 46.80 4.02
1385 1525 3.916392 GATCATCCCGCGCCGGTAG 62.916 68.421 14.57 8.51 46.80 3.18
1392 1532 3.671411 CGCGCCGGTAGCCTAGAT 61.671 66.667 16.38 0.00 38.78 1.98
1393 1533 2.258897 GCGCCGGTAGCCTAGATC 59.741 66.667 12.16 0.00 38.78 2.75
1394 1534 2.269529 GCGCCGGTAGCCTAGATCT 61.270 63.158 12.16 0.00 38.78 2.75
1398 1551 1.000052 GCCGGTAGCCTAGATCTGTTC 60.000 57.143 5.18 0.00 34.35 3.18
1405 1558 2.425312 AGCCTAGATCTGTTCGTCAGTG 59.575 50.000 5.18 0.00 43.97 3.66
1413 1566 1.261619 CTGTTCGTCAGTGCTTGTTCC 59.738 52.381 0.00 0.00 39.17 3.62
1425 1578 1.507141 CTTGTTCCTGTGTGTCCCGC 61.507 60.000 0.00 0.00 0.00 6.13
1426 1579 2.110213 GTTCCTGTGTGTCCCGCA 59.890 61.111 0.00 0.00 0.00 5.69
1427 1580 1.525077 GTTCCTGTGTGTCCCGCAA 60.525 57.895 0.00 0.00 32.02 4.85
1509 1668 2.739885 TTTGCTGCTTTGTGTGTGTT 57.260 40.000 0.00 0.00 0.00 3.32
1513 1672 2.288702 TGCTGCTTTGTGTGTGTTTGTT 60.289 40.909 0.00 0.00 0.00 2.83
1514 1673 3.057245 TGCTGCTTTGTGTGTGTTTGTTA 60.057 39.130 0.00 0.00 0.00 2.41
1515 1674 4.111916 GCTGCTTTGTGTGTGTTTGTTAT 58.888 39.130 0.00 0.00 0.00 1.89
1519 1678 5.098893 GCTTTGTGTGTGTTTGTTATGTGA 58.901 37.500 0.00 0.00 0.00 3.58
1520 1679 5.004345 GCTTTGTGTGTGTTTGTTATGTGAC 59.996 40.000 0.00 0.00 0.00 3.67
1522 1681 5.629079 TGTGTGTGTTTGTTATGTGACAA 57.371 34.783 0.00 0.00 37.73 3.18
1523 1682 5.394802 TGTGTGTGTTTGTTATGTGACAAC 58.605 37.500 0.00 0.00 39.11 3.32
1561 1722 0.168788 CATGGACGGACATGTGCAAC 59.831 55.000 18.05 9.85 43.59 4.17
1568 1729 0.523072 GGACATGTGCAACGCATCTT 59.477 50.000 13.07 0.00 41.91 2.40
1583 1744 4.043750 CGCATCTTTCTGTCTCTCTGATC 58.956 47.826 0.00 0.00 0.00 2.92
1586 1748 5.649557 CATCTTTCTGTCTCTCTGATCGTT 58.350 41.667 0.00 0.00 0.00 3.85
1587 1749 5.303747 TCTTTCTGTCTCTCTGATCGTTC 57.696 43.478 0.00 0.00 0.00 3.95
1593 1755 2.342948 GTCTCTCTGATCGTTCGTTTGC 59.657 50.000 0.00 0.00 0.00 3.68
1607 1777 4.577687 TCGTTTGCTGCTACTAAATTCG 57.422 40.909 0.00 0.00 0.00 3.34
1632 1802 6.492007 AGAGAAATGCTATTGTTGTGACTG 57.508 37.500 0.00 0.00 0.00 3.51
1634 1804 4.763793 AGAAATGCTATTGTTGTGACTGCT 59.236 37.500 0.00 0.00 0.00 4.24
1635 1805 4.430137 AATGCTATTGTTGTGACTGCTG 57.570 40.909 0.00 0.00 0.00 4.41
1636 1806 2.153645 TGCTATTGTTGTGACTGCTGG 58.846 47.619 0.00 0.00 0.00 4.85
1652 1822 7.538678 GTGACTGCTGGTACATTTTAATTTCAG 59.461 37.037 0.00 0.00 38.20 3.02
1658 1828 7.372451 TGGTACATTTTAATTTCAGGAGACG 57.628 36.000 0.00 0.00 0.00 4.18
1664 1834 9.626045 ACATTTTAATTTCAGGAGACGAATTTC 57.374 29.630 0.00 0.00 0.00 2.17
1674 1844 2.021380 CGAATTTCCGAAGCCGCG 59.979 61.111 0.00 0.00 0.00 6.46
1682 1852 1.807981 CCGAAGCCGCGTGAACATA 60.808 57.895 4.92 0.00 0.00 2.29
1685 1855 1.571919 GAAGCCGCGTGAACATATCT 58.428 50.000 4.92 0.00 0.00 1.98
1690 1860 1.258982 CCGCGTGAACATATCTTCTGC 59.741 52.381 4.92 0.00 0.00 4.26
1720 1893 7.977789 TGAACTAAGTTGAGCATTAACATGA 57.022 32.000 0.00 0.00 31.07 3.07
1731 1904 7.157347 TGAGCATTAACATGATCCATAGACTC 58.843 38.462 0.00 0.00 44.04 3.36
1737 1910 4.221530 ACATGATCCATAGACTCTGAGCA 58.778 43.478 4.19 0.00 0.00 4.26
1738 1911 4.839550 ACATGATCCATAGACTCTGAGCAT 59.160 41.667 4.19 0.00 34.44 3.79
1739 1912 6.015282 ACATGATCCATAGACTCTGAGCATA 58.985 40.000 4.19 0.00 32.56 3.14
1754 1927 7.715249 ACTCTGAGCATAAACTTTTCTGTACAA 59.285 33.333 4.19 0.00 0.00 2.41
1755 1928 8.445275 TCTGAGCATAAACTTTTCTGTACAAA 57.555 30.769 0.00 0.00 0.00 2.83
1756 1929 8.898761 TCTGAGCATAAACTTTTCTGTACAAAA 58.101 29.630 0.00 0.00 0.00 2.44
1757 1930 8.850454 TGAGCATAAACTTTTCTGTACAAAAC 57.150 30.769 0.00 0.00 0.00 2.43
1829 2002 6.635755 ACCAATAATACCATTTTGTTTCCCG 58.364 36.000 0.00 0.00 0.00 5.14
1852 2025 6.035650 CCGTATGATTTACGTGTTCAGTTCAT 59.964 38.462 0.00 0.14 39.09 2.57
1858 2031 9.863845 TGATTTACGTGTTCAGTTCATAATAGA 57.136 29.630 0.00 0.00 0.00 1.98
1882 2056 5.519927 ACAAAAAGCATTGTCTTCTTTTCCG 59.480 36.000 0.00 0.00 39.23 4.30
1884 2058 4.489679 AAGCATTGTCTTCTTTTCCGTC 57.510 40.909 0.00 0.00 0.00 4.79
1888 2062 4.328983 GCATTGTCTTCTTTTCCGTCGATA 59.671 41.667 0.00 0.00 0.00 2.92
1891 2065 7.464358 CATTGTCTTCTTTTCCGTCGATATTT 58.536 34.615 0.00 0.00 0.00 1.40
1894 2068 8.537049 TGTCTTCTTTTCCGTCGATATTTTTA 57.463 30.769 0.00 0.00 0.00 1.52
1904 2078 9.562583 TTCCGTCGATATTTTTATTTGAAAAGG 57.437 29.630 0.00 0.00 32.54 3.11
1905 2079 8.185505 TCCGTCGATATTTTTATTTGAAAAGGG 58.814 33.333 0.00 0.00 32.54 3.95
1943 2121 0.956633 TCGACCCGGATTAATCGAGG 59.043 55.000 16.84 16.84 38.59 4.63
2187 2374 3.632643 GGTCTAATAAACCCCAACGGA 57.367 47.619 0.00 0.00 34.64 4.69
2188 2375 4.160642 GGTCTAATAAACCCCAACGGAT 57.839 45.455 0.00 0.00 34.64 4.18
2189 2376 3.881089 GGTCTAATAAACCCCAACGGATG 59.119 47.826 0.00 0.00 34.64 3.51
2190 2377 4.384427 GGTCTAATAAACCCCAACGGATGA 60.384 45.833 0.00 0.00 34.64 2.92
2191 2378 5.187687 GTCTAATAAACCCCAACGGATGAA 58.812 41.667 0.00 0.00 34.64 2.57
2192 2379 5.296035 GTCTAATAAACCCCAACGGATGAAG 59.704 44.000 0.00 0.00 34.64 3.02
2193 2380 3.732048 ATAAACCCCAACGGATGAAGT 57.268 42.857 0.00 0.00 34.64 3.01
2194 2381 4.847990 ATAAACCCCAACGGATGAAGTA 57.152 40.909 0.00 0.00 34.64 2.24
2195 2382 2.781681 AACCCCAACGGATGAAGTAG 57.218 50.000 0.00 0.00 34.64 2.57
2196 2383 1.946984 ACCCCAACGGATGAAGTAGA 58.053 50.000 0.00 0.00 34.64 2.59
2197 2384 1.831736 ACCCCAACGGATGAAGTAGAG 59.168 52.381 0.00 0.00 34.64 2.43
2198 2385 1.473434 CCCCAACGGATGAAGTAGAGC 60.473 57.143 0.00 0.00 0.00 4.09
2199 2386 1.482593 CCCAACGGATGAAGTAGAGCT 59.517 52.381 0.00 0.00 0.00 4.09
2200 2387 2.093447 CCCAACGGATGAAGTAGAGCTT 60.093 50.000 0.00 0.00 40.76 3.74
2201 2388 2.932614 CCAACGGATGAAGTAGAGCTTG 59.067 50.000 0.00 0.00 37.59 4.01
2202 2389 3.368427 CCAACGGATGAAGTAGAGCTTGA 60.368 47.826 0.00 0.00 37.59 3.02
2203 2390 3.512033 ACGGATGAAGTAGAGCTTGAC 57.488 47.619 0.00 0.00 37.59 3.18
2204 2391 2.826128 ACGGATGAAGTAGAGCTTGACA 59.174 45.455 0.00 0.00 37.59 3.58
2205 2392 3.258372 ACGGATGAAGTAGAGCTTGACAA 59.742 43.478 0.00 0.00 37.59 3.18
2206 2393 4.245660 CGGATGAAGTAGAGCTTGACAAA 58.754 43.478 0.00 0.00 37.59 2.83
2207 2394 4.690748 CGGATGAAGTAGAGCTTGACAAAA 59.309 41.667 0.00 0.00 37.59 2.44
2208 2395 5.179368 CGGATGAAGTAGAGCTTGACAAAAA 59.821 40.000 0.00 0.00 37.59 1.94
2230 2417 8.834004 AAAAATAAGAGGGGGTCTAATAAACC 57.166 34.615 0.00 0.00 32.65 3.27
2311 2506 8.806429 TGCCTGAATCAAAATCTAATTGTCTA 57.194 30.769 0.00 0.00 0.00 2.59
2328 2523 8.463930 AATTGTCTATTTTGTGAGGAAGTGAA 57.536 30.769 0.00 0.00 0.00 3.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 9.211485 GCATAAACTAAACACTCACCTAAGTTA 57.789 33.333 0.00 0.00 0.00 2.24
3 4 7.174426 GGCATAAACTAAACACTCACCTAAGTT 59.826 37.037 0.00 0.00 0.00 2.66
4 5 6.653740 GGCATAAACTAAACACTCACCTAAGT 59.346 38.462 0.00 0.00 0.00 2.24
5 6 6.653320 TGGCATAAACTAAACACTCACCTAAG 59.347 38.462 0.00 0.00 0.00 2.18
6 7 6.428771 GTGGCATAAACTAAACACTCACCTAA 59.571 38.462 0.00 0.00 0.00 2.69
7 8 5.935789 GTGGCATAAACTAAACACTCACCTA 59.064 40.000 0.00 0.00 0.00 3.08
8 9 4.760204 GTGGCATAAACTAAACACTCACCT 59.240 41.667 0.00 0.00 0.00 4.00
9 10 4.517453 TGTGGCATAAACTAAACACTCACC 59.483 41.667 0.00 0.00 0.00 4.02
10 11 5.238650 AGTGTGGCATAAACTAAACACTCAC 59.761 40.000 0.60 0.00 43.45 3.51
11 12 5.373222 AGTGTGGCATAAACTAAACACTCA 58.627 37.500 0.60 0.00 43.45 3.41
12 13 5.941948 AGTGTGGCATAAACTAAACACTC 57.058 39.130 0.60 0.00 43.45 3.51
14 15 6.575942 CGTAAAGTGTGGCATAAACTAAACAC 59.424 38.462 0.00 0.00 38.51 3.32
15 16 6.660722 CGTAAAGTGTGGCATAAACTAAACA 58.339 36.000 0.00 0.00 0.00 2.83
16 17 5.566395 GCGTAAAGTGTGGCATAAACTAAAC 59.434 40.000 0.00 0.00 0.00 2.01
17 18 5.238868 TGCGTAAAGTGTGGCATAAACTAAA 59.761 36.000 0.00 0.00 0.00 1.85
18 19 4.755629 TGCGTAAAGTGTGGCATAAACTAA 59.244 37.500 0.00 0.00 0.00 2.24
19 20 4.316645 TGCGTAAAGTGTGGCATAAACTA 58.683 39.130 0.00 0.00 0.00 2.24
20 21 3.142951 TGCGTAAAGTGTGGCATAAACT 58.857 40.909 0.00 0.00 0.00 2.66
21 22 3.546002 TGCGTAAAGTGTGGCATAAAC 57.454 42.857 0.00 0.00 0.00 2.01
22 23 3.610585 GCTTGCGTAAAGTGTGGCATAAA 60.611 43.478 0.00 0.00 38.25 1.40
23 24 2.095466 GCTTGCGTAAAGTGTGGCATAA 60.095 45.455 0.00 0.00 38.25 1.90
24 25 1.466950 GCTTGCGTAAAGTGTGGCATA 59.533 47.619 0.00 0.00 38.25 3.14
25 26 0.240945 GCTTGCGTAAAGTGTGGCAT 59.759 50.000 0.00 0.00 38.25 4.40
26 27 1.652012 GCTTGCGTAAAGTGTGGCA 59.348 52.632 0.00 0.00 38.25 4.92
27 28 1.081442 GGCTTGCGTAAAGTGTGGC 60.081 57.895 2.61 0.00 38.25 5.01
28 29 0.881118 ATGGCTTGCGTAAAGTGTGG 59.119 50.000 2.61 0.00 38.25 4.17
29 30 2.704725 AATGGCTTGCGTAAAGTGTG 57.295 45.000 2.61 0.00 38.25 3.82
30 31 3.726291 AAAATGGCTTGCGTAAAGTGT 57.274 38.095 2.61 0.00 38.25 3.55
31 32 3.184178 CCAAAAATGGCTTGCGTAAAGTG 59.816 43.478 2.61 0.00 38.25 3.16
32 33 3.068873 TCCAAAAATGGCTTGCGTAAAGT 59.931 39.130 2.61 0.00 38.25 2.66
33 34 3.648009 TCCAAAAATGGCTTGCGTAAAG 58.352 40.909 0.00 0.00 39.07 1.85
34 35 3.735237 TCCAAAAATGGCTTGCGTAAA 57.265 38.095 0.00 0.00 0.00 2.01
35 36 3.367910 GGATCCAAAAATGGCTTGCGTAA 60.368 43.478 6.95 0.00 0.00 3.18
36 37 2.165437 GGATCCAAAAATGGCTTGCGTA 59.835 45.455 6.95 0.00 0.00 4.42
37 38 1.066929 GGATCCAAAAATGGCTTGCGT 60.067 47.619 6.95 0.00 0.00 5.24
38 39 1.643880 GGATCCAAAAATGGCTTGCG 58.356 50.000 6.95 0.00 0.00 4.85
39 40 1.278699 TGGGATCCAAAAATGGCTTGC 59.721 47.619 15.23 0.00 0.00 4.01
40 41 2.302445 TGTGGGATCCAAAAATGGCTTG 59.698 45.455 15.23 0.00 34.18 4.01
41 42 2.618794 TGTGGGATCCAAAAATGGCTT 58.381 42.857 15.23 0.00 34.18 4.35
42 43 2.323999 TGTGGGATCCAAAAATGGCT 57.676 45.000 15.23 0.00 34.18 4.75
43 44 2.420408 CCATGTGGGATCCAAAAATGGC 60.420 50.000 18.44 0.00 40.01 4.40
44 45 2.420408 GCCATGTGGGATCCAAAAATGG 60.420 50.000 23.23 23.23 40.89 3.16
45 46 2.236644 TGCCATGTGGGATCCAAAAATG 59.763 45.455 15.23 11.53 40.01 2.32
46 47 2.549082 TGCCATGTGGGATCCAAAAAT 58.451 42.857 15.23 0.00 40.01 1.82
47 48 2.021262 TGCCATGTGGGATCCAAAAA 57.979 45.000 15.23 0.00 40.01 1.94
48 49 2.250921 ATGCCATGTGGGATCCAAAA 57.749 45.000 15.23 0.00 43.11 2.44
49 50 2.024560 TGTATGCCATGTGGGATCCAAA 60.025 45.455 15.23 0.00 43.11 3.28
50 51 1.568123 TGTATGCCATGTGGGATCCAA 59.432 47.619 15.23 0.00 43.11 3.53
51 52 1.133823 GTGTATGCCATGTGGGATCCA 60.134 52.381 15.23 1.89 43.11 3.41
52 53 1.133823 TGTGTATGCCATGTGGGATCC 60.134 52.381 9.45 1.92 43.11 3.36
53 54 2.346766 TGTGTATGCCATGTGGGATC 57.653 50.000 9.45 3.25 43.11 3.36
55 56 3.941704 TTATGTGTATGCCATGTGGGA 57.058 42.857 0.54 0.00 40.01 4.37
56 57 4.998671 TTTTATGTGTATGCCATGTGGG 57.001 40.909 0.54 0.00 40.85 4.61
78 79 8.897752 GCAAGTCTAAAGGAATCTTATCACATT 58.102 33.333 0.00 0.00 32.01 2.71
79 80 7.500559 GGCAAGTCTAAAGGAATCTTATCACAT 59.499 37.037 0.00 0.00 32.01 3.21
80 81 6.823689 GGCAAGTCTAAAGGAATCTTATCACA 59.176 38.462 0.00 0.00 32.01 3.58
81 82 6.823689 TGGCAAGTCTAAAGGAATCTTATCAC 59.176 38.462 0.00 0.00 32.01 3.06
82 83 6.957631 TGGCAAGTCTAAAGGAATCTTATCA 58.042 36.000 0.00 0.00 32.01 2.15
83 84 7.554476 AGTTGGCAAGTCTAAAGGAATCTTATC 59.446 37.037 0.00 0.00 32.01 1.75
84 85 7.406104 AGTTGGCAAGTCTAAAGGAATCTTAT 58.594 34.615 0.00 0.00 32.01 1.73
85 86 6.779860 AGTTGGCAAGTCTAAAGGAATCTTA 58.220 36.000 0.00 0.00 32.01 2.10
86 87 5.635120 AGTTGGCAAGTCTAAAGGAATCTT 58.365 37.500 0.00 0.00 34.07 2.40
87 88 5.248380 AGTTGGCAAGTCTAAAGGAATCT 57.752 39.130 0.00 0.00 0.00 2.40
88 89 5.241728 ACAAGTTGGCAAGTCTAAAGGAATC 59.758 40.000 8.24 0.00 0.00 2.52
89 90 5.010012 CACAAGTTGGCAAGTCTAAAGGAAT 59.990 40.000 8.24 0.00 0.00 3.01
90 91 4.338118 CACAAGTTGGCAAGTCTAAAGGAA 59.662 41.667 8.24 0.00 0.00 3.36
91 92 3.882888 CACAAGTTGGCAAGTCTAAAGGA 59.117 43.478 8.24 0.00 0.00 3.36
92 93 3.004734 CCACAAGTTGGCAAGTCTAAAGG 59.995 47.826 8.24 3.19 39.07 3.11
93 94 4.228912 CCACAAGTTGGCAAGTCTAAAG 57.771 45.455 8.24 0.00 39.07 1.85
104 105 6.076490 CATCAAAATGAGAGCCACAAGTTGG 61.076 44.000 7.96 0.00 40.99 3.77
105 106 4.572985 TCAAAATGAGAGCCACAAGTTG 57.427 40.909 0.00 0.00 0.00 3.16
106 107 4.828939 TCATCAAAATGAGAGCCACAAGTT 59.171 37.500 0.00 0.00 36.98 2.66
107 108 4.401022 TCATCAAAATGAGAGCCACAAGT 58.599 39.130 0.00 0.00 36.98 3.16
108 109 5.048224 AGTTCATCAAAATGAGAGCCACAAG 60.048 40.000 0.00 0.00 42.72 3.16
109 110 4.828939 AGTTCATCAAAATGAGAGCCACAA 59.171 37.500 0.00 0.00 42.72 3.33
110 111 4.401022 AGTTCATCAAAATGAGAGCCACA 58.599 39.130 0.00 0.00 42.72 4.17
111 112 6.150140 AGTTAGTTCATCAAAATGAGAGCCAC 59.850 38.462 0.00 0.00 42.72 5.01
112 113 6.240894 AGTTAGTTCATCAAAATGAGAGCCA 58.759 36.000 0.00 0.00 42.72 4.75
113 114 6.749923 AGTTAGTTCATCAAAATGAGAGCC 57.250 37.500 0.00 0.00 42.72 4.70
114 115 9.766277 CTAAAGTTAGTTCATCAAAATGAGAGC 57.234 33.333 0.00 0.00 42.72 4.09
120 121 9.899226 GCTTGTCTAAAGTTAGTTCATCAAAAT 57.101 29.630 0.00 0.00 32.61 1.82
121 122 9.120538 AGCTTGTCTAAAGTTAGTTCATCAAAA 57.879 29.630 0.00 0.00 32.61 2.44
122 123 8.677148 AGCTTGTCTAAAGTTAGTTCATCAAA 57.323 30.769 0.00 0.00 32.61 2.69
123 124 8.559536 CAAGCTTGTCTAAAGTTAGTTCATCAA 58.440 33.333 18.65 0.00 32.61 2.57
124 125 7.931407 TCAAGCTTGTCTAAAGTTAGTTCATCA 59.069 33.333 25.19 0.00 32.61 3.07
125 126 8.224437 GTCAAGCTTGTCTAAAGTTAGTTCATC 58.776 37.037 25.19 0.00 32.61 2.92
126 127 7.715249 TGTCAAGCTTGTCTAAAGTTAGTTCAT 59.285 33.333 25.19 0.00 32.61 2.57
127 128 7.045416 TGTCAAGCTTGTCTAAAGTTAGTTCA 58.955 34.615 25.19 0.00 32.61 3.18
128 129 7.478520 TGTCAAGCTTGTCTAAAGTTAGTTC 57.521 36.000 25.19 0.00 32.61 3.01
129 130 7.859325 TTGTCAAGCTTGTCTAAAGTTAGTT 57.141 32.000 25.19 0.00 32.61 2.24
130 131 7.859325 TTTGTCAAGCTTGTCTAAAGTTAGT 57.141 32.000 25.19 0.00 32.61 2.24
131 132 9.736023 ATTTTTGTCAAGCTTGTCTAAAGTTAG 57.264 29.630 25.19 0.00 0.00 2.34
134 135 9.683069 CATATTTTTGTCAAGCTTGTCTAAAGT 57.317 29.630 25.19 23.46 0.00 2.66
135 136 9.683069 ACATATTTTTGTCAAGCTTGTCTAAAG 57.317 29.630 25.19 17.07 0.00 1.85
136 137 9.462174 CACATATTTTTGTCAAGCTTGTCTAAA 57.538 29.630 25.19 23.21 0.00 1.85
137 138 8.845227 TCACATATTTTTGTCAAGCTTGTCTAA 58.155 29.630 25.19 19.17 0.00 2.10
138 139 8.389779 TCACATATTTTTGTCAAGCTTGTCTA 57.610 30.769 25.19 14.41 0.00 2.59
139 140 7.275888 TCACATATTTTTGTCAAGCTTGTCT 57.724 32.000 25.19 6.95 0.00 3.41
140 141 9.624697 TTATCACATATTTTTGTCAAGCTTGTC 57.375 29.630 25.19 20.28 0.00 3.18
141 142 9.630098 CTTATCACATATTTTTGTCAAGCTTGT 57.370 29.630 25.19 7.49 0.00 3.16
142 143 9.844790 TCTTATCACATATTTTTGTCAAGCTTG 57.155 29.630 20.81 20.81 0.00 4.01
153 154 9.865321 GCATTGCCATATCTTATCACATATTTT 57.135 29.630 0.00 0.00 0.00 1.82
154 155 9.251440 AGCATTGCCATATCTTATCACATATTT 57.749 29.630 4.70 0.00 0.00 1.40
155 156 8.818622 AGCATTGCCATATCTTATCACATATT 57.181 30.769 4.70 0.00 0.00 1.28
156 157 8.683615 CAAGCATTGCCATATCTTATCACATAT 58.316 33.333 4.70 0.00 40.39 1.78
157 158 8.047413 CAAGCATTGCCATATCTTATCACATA 57.953 34.615 4.70 0.00 40.39 2.29
158 159 6.920817 CAAGCATTGCCATATCTTATCACAT 58.079 36.000 4.70 0.00 40.39 3.21
159 160 6.321848 CAAGCATTGCCATATCTTATCACA 57.678 37.500 4.70 0.00 40.39 3.58
175 176 6.295067 GGTTGTTTGGTTATAGGACAAGCATT 60.295 38.462 10.66 0.00 43.98 3.56
176 177 5.185056 GGTTGTTTGGTTATAGGACAAGCAT 59.815 40.000 10.66 0.00 43.98 3.79
177 178 4.521256 GGTTGTTTGGTTATAGGACAAGCA 59.479 41.667 10.66 0.00 43.98 3.91
178 179 4.082408 GGGTTGTTTGGTTATAGGACAAGC 60.082 45.833 7.87 7.87 43.88 4.01
179 180 4.461431 GGGGTTGTTTGGTTATAGGACAAG 59.539 45.833 0.00 0.00 31.58 3.16
180 181 4.140994 TGGGGTTGTTTGGTTATAGGACAA 60.141 41.667 0.00 0.00 0.00 3.18
181 182 3.398292 TGGGGTTGTTTGGTTATAGGACA 59.602 43.478 0.00 0.00 0.00 4.02
182 183 3.760151 GTGGGGTTGTTTGGTTATAGGAC 59.240 47.826 0.00 0.00 0.00 3.85
183 184 3.559597 CGTGGGGTTGTTTGGTTATAGGA 60.560 47.826 0.00 0.00 0.00 2.94
184 185 2.750712 CGTGGGGTTGTTTGGTTATAGG 59.249 50.000 0.00 0.00 0.00 2.57
185 186 3.414269 ACGTGGGGTTGTTTGGTTATAG 58.586 45.455 0.00 0.00 0.00 1.31
186 187 3.072768 AGACGTGGGGTTGTTTGGTTATA 59.927 43.478 0.00 0.00 0.00 0.98
187 188 2.158579 AGACGTGGGGTTGTTTGGTTAT 60.159 45.455 0.00 0.00 0.00 1.89
188 189 1.212441 AGACGTGGGGTTGTTTGGTTA 59.788 47.619 0.00 0.00 0.00 2.85
189 190 0.033894 AGACGTGGGGTTGTTTGGTT 60.034 50.000 0.00 0.00 0.00 3.67
190 191 0.464916 GAGACGTGGGGTTGTTTGGT 60.465 55.000 0.00 0.00 0.00 3.67
191 192 1.503818 CGAGACGTGGGGTTGTTTGG 61.504 60.000 0.00 0.00 0.00 3.28
192 193 1.938861 CGAGACGTGGGGTTGTTTG 59.061 57.895 0.00 0.00 0.00 2.93
193 194 1.890510 GCGAGACGTGGGGTTGTTT 60.891 57.895 0.00 0.00 0.00 2.83
194 195 2.280592 GCGAGACGTGGGGTTGTT 60.281 61.111 0.00 0.00 0.00 2.83
195 196 3.231736 AGCGAGACGTGGGGTTGT 61.232 61.111 0.00 0.00 0.00 3.32
196 197 2.507110 ATCAGCGAGACGTGGGGTTG 62.507 60.000 0.00 0.00 0.00 3.77
197 198 2.227089 GATCAGCGAGACGTGGGGTT 62.227 60.000 0.00 0.00 0.00 4.11
198 199 2.680352 ATCAGCGAGACGTGGGGT 60.680 61.111 0.00 0.00 0.00 4.95
199 200 2.105128 GATCAGCGAGACGTGGGG 59.895 66.667 0.00 0.00 0.00 4.96
200 201 2.278206 CGATCAGCGAGACGTGGG 60.278 66.667 0.00 0.00 44.57 4.61
201 202 2.791927 TCGATCAGCGAGACGTGG 59.208 61.111 0.00 0.00 45.59 4.94
209 210 1.256284 GATCACGACGTCGATCAGCG 61.256 60.000 41.52 21.53 43.02 5.18
229 230 1.434622 GAGGACGCGTGGATCTCGTA 61.435 60.000 20.70 0.00 37.62 3.43
235 236 4.175489 CGACGAGGACGCGTGGAT 62.175 66.667 20.70 0.49 45.72 3.41
285 310 3.138468 ACTTTTTCCCTGTCTGCCTAGTT 59.862 43.478 0.00 0.00 0.00 2.24
295 320 3.680777 TTCTCCCAACTTTTTCCCTGT 57.319 42.857 0.00 0.00 0.00 4.00
316 342 4.466827 TGTCATATGCTGGAATGATTGCT 58.533 39.130 0.00 0.00 34.77 3.91
317 343 4.321008 CCTGTCATATGCTGGAATGATTGC 60.321 45.833 13.93 0.00 34.77 3.56
336 362 1.189752 ACTCATGATCACGAGCCTGT 58.810 50.000 18.33 0.00 32.21 4.00
346 372 3.181516 GGTCAGACGCAAAACTCATGATC 60.182 47.826 0.00 0.00 0.00 2.92
347 373 2.744202 GGTCAGACGCAAAACTCATGAT 59.256 45.455 0.00 0.00 0.00 2.45
348 374 2.143122 GGTCAGACGCAAAACTCATGA 58.857 47.619 0.00 0.00 0.00 3.07
349 375 2.146342 AGGTCAGACGCAAAACTCATG 58.854 47.619 0.00 0.00 0.00 3.07
350 376 2.549754 CAAGGTCAGACGCAAAACTCAT 59.450 45.455 0.00 0.00 0.00 2.90
351 377 1.939934 CAAGGTCAGACGCAAAACTCA 59.060 47.619 0.00 0.00 0.00 3.41
352 378 2.210116 TCAAGGTCAGACGCAAAACTC 58.790 47.619 0.00 0.00 0.00 3.01
353 379 2.325583 TCAAGGTCAGACGCAAAACT 57.674 45.000 0.00 0.00 0.00 2.66
354 380 2.350772 CCATCAAGGTCAGACGCAAAAC 60.351 50.000 0.00 0.00 0.00 2.43
355 381 1.879380 CCATCAAGGTCAGACGCAAAA 59.121 47.619 0.00 0.00 0.00 2.44
356 382 1.522668 CCATCAAGGTCAGACGCAAA 58.477 50.000 0.00 0.00 0.00 3.68
357 383 0.321564 CCCATCAAGGTCAGACGCAA 60.322 55.000 0.00 0.00 34.66 4.85
358 384 1.191489 TCCCATCAAGGTCAGACGCA 61.191 55.000 0.00 0.00 34.66 5.24
359 385 0.036388 TTCCCATCAAGGTCAGACGC 60.036 55.000 0.00 0.00 34.66 5.19
360 386 2.472695 TTTCCCATCAAGGTCAGACG 57.527 50.000 0.00 0.00 34.66 4.18
361 387 3.696548 GGAATTTCCCATCAAGGTCAGAC 59.303 47.826 3.89 0.00 34.66 3.51
362 388 3.593328 AGGAATTTCCCATCAAGGTCAGA 59.407 43.478 11.92 0.00 37.19 3.27
363 389 3.973425 AGGAATTTCCCATCAAGGTCAG 58.027 45.455 11.92 0.00 37.19 3.51
364 390 4.202663 TGAAGGAATTTCCCATCAAGGTCA 60.203 41.667 11.92 1.34 37.19 4.02
368 394 5.717119 CTGTTGAAGGAATTTCCCATCAAG 58.283 41.667 24.09 15.21 40.96 3.02
418 481 1.068472 CATCGGTATCTCACGGGCTAC 60.068 57.143 0.00 0.00 0.00 3.58
419 482 1.244816 CATCGGTATCTCACGGGCTA 58.755 55.000 0.00 0.00 0.00 3.93
430 493 1.137086 GCTCACACTCCACATCGGTAT 59.863 52.381 0.00 0.00 35.57 2.73
442 505 1.065854 GGCCTTACTGATGCTCACACT 60.066 52.381 0.00 0.00 0.00 3.55
443 506 1.373570 GGCCTTACTGATGCTCACAC 58.626 55.000 0.00 0.00 0.00 3.82
444 507 0.253044 GGGCCTTACTGATGCTCACA 59.747 55.000 0.84 0.00 0.00 3.58
445 508 0.543749 AGGGCCTTACTGATGCTCAC 59.456 55.000 0.00 0.00 0.00 3.51
447 510 0.543749 ACAGGGCCTTACTGATGCTC 59.456 55.000 1.32 0.00 39.24 4.26
448 511 0.995024 AACAGGGCCTTACTGATGCT 59.005 50.000 1.32 0.00 39.24 3.79
449 512 1.839424 AAACAGGGCCTTACTGATGC 58.161 50.000 1.32 0.00 39.24 3.91
451 514 4.929146 AACTAAACAGGGCCTTACTGAT 57.071 40.909 1.32 0.00 39.24 2.90
452 515 4.103469 TGAAACTAAACAGGGCCTTACTGA 59.897 41.667 1.32 0.00 39.24 3.41
453 516 4.394729 TGAAACTAAACAGGGCCTTACTG 58.605 43.478 1.32 4.00 41.64 2.74
454 517 4.717279 TGAAACTAAACAGGGCCTTACT 57.283 40.909 1.32 0.00 0.00 2.24
456 519 7.726738 ACTTATTTGAAACTAAACAGGGCCTTA 59.273 33.333 1.32 0.00 0.00 2.69
457 520 6.553476 ACTTATTTGAAACTAAACAGGGCCTT 59.447 34.615 1.32 0.00 0.00 4.35
458 521 6.075315 ACTTATTTGAAACTAAACAGGGCCT 58.925 36.000 0.00 0.00 0.00 5.19
459 522 6.015772 TGACTTATTTGAAACTAAACAGGGCC 60.016 38.462 0.00 0.00 0.00 5.80
460 523 6.861572 GTGACTTATTTGAAACTAAACAGGGC 59.138 38.462 0.00 0.00 0.00 5.19
461 524 7.013846 TGGTGACTTATTTGAAACTAAACAGGG 59.986 37.037 0.00 0.00 0.00 4.45
462 525 7.936584 TGGTGACTTATTTGAAACTAAACAGG 58.063 34.615 0.00 0.00 0.00 4.00
463 526 9.233232 GTTGGTGACTTATTTGAAACTAAACAG 57.767 33.333 0.00 0.00 0.00 3.16
464 527 8.962679 AGTTGGTGACTTATTTGAAACTAAACA 58.037 29.630 0.00 0.00 33.92 2.83
465 528 9.797556 AAGTTGGTGACTTATTTGAAACTAAAC 57.202 29.630 0.00 0.00 46.61 2.01
480 543 8.504005 CATTTTTCGACTTATAAGTTGGTGACT 58.496 33.333 25.99 10.93 39.88 3.41
481 544 7.270579 GCATTTTTCGACTTATAAGTTGGTGAC 59.729 37.037 25.99 10.35 39.88 3.67
482 545 7.041030 TGCATTTTTCGACTTATAAGTTGGTGA 60.041 33.333 25.99 16.00 39.88 4.02
483 546 7.081349 TGCATTTTTCGACTTATAAGTTGGTG 58.919 34.615 25.99 18.55 39.88 4.17
484 547 7.209471 TGCATTTTTCGACTTATAAGTTGGT 57.791 32.000 25.99 4.15 39.88 3.67
485 548 8.514136 TTTGCATTTTTCGACTTATAAGTTGG 57.486 30.769 25.99 17.93 39.88 3.77
529 592 9.670442 TGGGATGACTTATAAGTTAGGTCTATT 57.330 33.333 18.96 0.00 39.88 1.73
530 593 9.670442 TTGGGATGACTTATAAGTTAGGTCTAT 57.330 33.333 18.96 0.00 39.88 1.98
531 594 8.921205 GTTGGGATGACTTATAAGTTAGGTCTA 58.079 37.037 18.96 4.89 39.88 2.59
532 595 7.624077 AGTTGGGATGACTTATAAGTTAGGTCT 59.376 37.037 18.96 0.48 39.88 3.85
533 596 7.793036 AGTTGGGATGACTTATAAGTTAGGTC 58.207 38.462 18.96 10.29 39.88 3.85
534 597 7.750947 AGTTGGGATGACTTATAAGTTAGGT 57.249 36.000 18.96 1.55 39.88 3.08
545 608 9.838339 CTTATGACTTATAAGTTGGGATGACTT 57.162 33.333 18.96 5.26 42.11 3.01
558 621 6.826741 GGGGTGAAGCAACTTATGACTTATAA 59.173 38.462 0.00 0.00 0.00 0.98
559 622 6.069905 TGGGGTGAAGCAACTTATGACTTATA 60.070 38.462 0.00 0.00 0.00 0.98
560 623 5.193679 GGGGTGAAGCAACTTATGACTTAT 58.806 41.667 0.00 0.00 0.00 1.73
561 624 4.042311 TGGGGTGAAGCAACTTATGACTTA 59.958 41.667 0.00 0.00 0.00 2.24
562 625 3.181434 TGGGGTGAAGCAACTTATGACTT 60.181 43.478 0.00 0.00 0.00 3.01
563 626 2.375174 TGGGGTGAAGCAACTTATGACT 59.625 45.455 0.00 0.00 0.00 3.41
564 627 2.790433 TGGGGTGAAGCAACTTATGAC 58.210 47.619 0.00 0.00 0.00 3.06
565 628 3.153919 GTTGGGGTGAAGCAACTTATGA 58.846 45.455 0.00 0.00 0.00 2.15
566 629 3.157087 AGTTGGGGTGAAGCAACTTATG 58.843 45.455 0.00 0.00 34.63 1.90
567 630 3.525800 AGTTGGGGTGAAGCAACTTAT 57.474 42.857 0.00 0.00 34.63 1.73
568 631 3.306472 AAGTTGGGGTGAAGCAACTTA 57.694 42.857 0.32 0.00 43.44 2.24
569 632 2.159179 AAGTTGGGGTGAAGCAACTT 57.841 45.000 0.00 0.00 41.36 2.66
570 633 3.306472 TTAAGTTGGGGTGAAGCAACT 57.694 42.857 0.00 0.00 39.27 3.16
571 634 4.116961 GTTTTAAGTTGGGGTGAAGCAAC 58.883 43.478 0.00 0.00 0.00 4.17
572 635 4.027437 AGTTTTAAGTTGGGGTGAAGCAA 58.973 39.130 0.00 0.00 0.00 3.91
573 636 3.637769 AGTTTTAAGTTGGGGTGAAGCA 58.362 40.909 0.00 0.00 0.00 3.91
574 637 4.665833 AAGTTTTAAGTTGGGGTGAAGC 57.334 40.909 0.00 0.00 0.00 3.86
575 638 9.074576 ACTTATAAGTTTTAAGTTGGGGTGAAG 57.925 33.333 12.50 0.00 36.70 3.02
576 639 8.999905 ACTTATAAGTTTTAAGTTGGGGTGAA 57.000 30.769 12.50 0.00 36.70 3.18
577 640 8.219178 TGACTTATAAGTTTTAAGTTGGGGTGA 58.781 33.333 18.96 0.00 39.40 4.02
578 641 8.398878 TGACTTATAAGTTTTAAGTTGGGGTG 57.601 34.615 18.96 0.00 39.40 4.61
579 642 9.239551 GATGACTTATAAGTTTTAAGTTGGGGT 57.760 33.333 18.96 5.40 39.40 4.95
580 643 8.395633 CGATGACTTATAAGTTTTAAGTTGGGG 58.604 37.037 18.96 6.90 39.40 4.96
581 644 7.908601 GCGATGACTTATAAGTTTTAAGTTGGG 59.091 37.037 18.96 9.88 39.40 4.12
582 645 7.908601 GGCGATGACTTATAAGTTTTAAGTTGG 59.091 37.037 18.96 7.49 39.40 3.77
583 646 8.665685 AGGCGATGACTTATAAGTTTTAAGTTG 58.334 33.333 18.96 10.27 39.40 3.16
584 647 8.788325 AGGCGATGACTTATAAGTTTTAAGTT 57.212 30.769 18.96 5.49 39.40 2.66
585 648 8.788325 AAGGCGATGACTTATAAGTTTTAAGT 57.212 30.769 18.96 15.86 41.41 2.24
589 652 9.005777 TGTAAAAGGCGATGACTTATAAGTTTT 57.994 29.630 18.96 14.10 39.88 2.43
590 653 8.556213 TGTAAAAGGCGATGACTTATAAGTTT 57.444 30.769 18.96 10.17 39.88 2.66
591 654 8.612619 CATGTAAAAGGCGATGACTTATAAGTT 58.387 33.333 18.96 4.55 39.88 2.66
592 655 7.226720 CCATGTAAAAGGCGATGACTTATAAGT 59.773 37.037 18.05 18.05 43.16 2.24
593 656 7.307989 CCCATGTAAAAGGCGATGACTTATAAG 60.308 40.741 11.05 11.05 26.79 1.73
594 657 6.485313 CCCATGTAAAAGGCGATGACTTATAA 59.515 38.462 0.00 0.00 26.79 0.98
595 658 5.995282 CCCATGTAAAAGGCGATGACTTATA 59.005 40.000 0.00 0.00 26.79 0.98
596 659 4.821805 CCCATGTAAAAGGCGATGACTTAT 59.178 41.667 0.00 0.00 26.79 1.73
597 660 4.196193 CCCATGTAAAAGGCGATGACTTA 58.804 43.478 0.00 0.00 26.79 2.24
598 661 3.016736 CCCATGTAAAAGGCGATGACTT 58.983 45.455 0.00 0.00 28.57 3.01
599 662 2.026262 ACCCATGTAAAAGGCGATGACT 60.026 45.455 0.00 0.00 0.00 3.41
600 663 2.354821 GACCCATGTAAAAGGCGATGAC 59.645 50.000 0.00 0.00 0.00 3.06
601 664 2.639065 GACCCATGTAAAAGGCGATGA 58.361 47.619 0.00 0.00 0.00 2.92
602 665 1.676006 GGACCCATGTAAAAGGCGATG 59.324 52.381 0.00 0.00 0.00 3.84
603 666 1.283613 TGGACCCATGTAAAAGGCGAT 59.716 47.619 0.00 0.00 0.00 4.58
604 667 0.693622 TGGACCCATGTAAAAGGCGA 59.306 50.000 0.00 0.00 0.00 5.54
605 668 1.676006 GATGGACCCATGTAAAAGGCG 59.324 52.381 6.23 0.00 36.70 5.52
606 669 2.733956 TGATGGACCCATGTAAAAGGC 58.266 47.619 6.23 0.00 36.70 4.35
607 670 4.796606 AGATGATGGACCCATGTAAAAGG 58.203 43.478 6.23 0.00 36.70 3.11
608 671 6.780457 AAAGATGATGGACCCATGTAAAAG 57.220 37.500 6.23 0.00 36.70 2.27
609 672 7.178573 TGTAAAGATGATGGACCCATGTAAAA 58.821 34.615 6.23 0.00 36.70 1.52
610 673 6.726379 TGTAAAGATGATGGACCCATGTAAA 58.274 36.000 6.23 0.00 36.70 2.01
611 674 6.320434 TGTAAAGATGATGGACCCATGTAA 57.680 37.500 6.23 0.00 36.70 2.41
612 675 5.966853 TGTAAAGATGATGGACCCATGTA 57.033 39.130 6.23 0.00 36.70 2.29
613 676 4.860802 TGTAAAGATGATGGACCCATGT 57.139 40.909 6.23 0.00 36.70 3.21
614 677 7.822161 TTAATGTAAAGATGATGGACCCATG 57.178 36.000 6.23 0.00 36.70 3.66
615 678 8.837099 TTTTAATGTAAAGATGATGGACCCAT 57.163 30.769 0.32 0.32 39.69 4.00
616 679 8.657387 TTTTTAATGTAAAGATGATGGACCCA 57.343 30.769 0.00 0.00 0.00 4.51
640 703 9.150348 CCTGAACACATTTTTCTACTTTGTTTT 57.850 29.630 0.00 0.00 0.00 2.43
641 704 8.311109 ACCTGAACACATTTTTCTACTTTGTTT 58.689 29.630 0.00 0.00 0.00 2.83
642 705 7.759433 CACCTGAACACATTTTTCTACTTTGTT 59.241 33.333 0.00 0.00 0.00 2.83
643 706 7.122055 TCACCTGAACACATTTTTCTACTTTGT 59.878 33.333 0.00 0.00 0.00 2.83
644 707 7.432252 GTCACCTGAACACATTTTTCTACTTTG 59.568 37.037 0.00 0.00 0.00 2.77
645 708 7.339466 AGTCACCTGAACACATTTTTCTACTTT 59.661 33.333 0.00 0.00 0.00 2.66
646 709 6.828785 AGTCACCTGAACACATTTTTCTACTT 59.171 34.615 0.00 0.00 0.00 2.24
647 710 6.357367 AGTCACCTGAACACATTTTTCTACT 58.643 36.000 0.00 0.00 0.00 2.57
648 711 6.619801 AGTCACCTGAACACATTTTTCTAC 57.380 37.500 0.00 0.00 0.00 2.59
649 712 8.918202 ATAAGTCACCTGAACACATTTTTCTA 57.082 30.769 0.00 0.00 0.00 2.10
650 713 7.823745 ATAAGTCACCTGAACACATTTTTCT 57.176 32.000 0.00 0.00 0.00 2.52
651 714 9.612620 CTTATAAGTCACCTGAACACATTTTTC 57.387 33.333 4.18 0.00 0.00 2.29
652 715 9.131791 ACTTATAAGTCACCTGAACACATTTTT 57.868 29.630 12.50 0.00 32.86 1.94
653 716 8.691661 ACTTATAAGTCACCTGAACACATTTT 57.308 30.769 12.50 0.00 32.86 1.82
669 732 4.803098 AGTTGTCGCCTGACTTATAAGT 57.197 40.909 18.05 18.05 45.70 2.24
670 733 6.588756 TGTTTAGTTGTCGCCTGACTTATAAG 59.411 38.462 11.05 11.05 45.70 1.73
671 734 6.457355 TGTTTAGTTGTCGCCTGACTTATAA 58.543 36.000 0.00 0.00 45.70 0.98
672 735 6.028146 TGTTTAGTTGTCGCCTGACTTATA 57.972 37.500 0.00 0.00 45.70 0.98
673 736 4.890088 TGTTTAGTTGTCGCCTGACTTAT 58.110 39.130 0.00 0.00 45.70 1.73
674 737 4.304110 CTGTTTAGTTGTCGCCTGACTTA 58.696 43.478 0.00 0.00 45.70 2.24
675 738 3.131396 CTGTTTAGTTGTCGCCTGACTT 58.869 45.455 0.00 0.00 45.70 3.01
676 739 2.548067 CCTGTTTAGTTGTCGCCTGACT 60.548 50.000 0.00 0.00 45.70 3.41
677 740 1.798813 CCTGTTTAGTTGTCGCCTGAC 59.201 52.381 0.00 0.00 45.71 3.51
678 741 1.876416 GCCTGTTTAGTTGTCGCCTGA 60.876 52.381 0.00 0.00 0.00 3.86
679 742 0.517316 GCCTGTTTAGTTGTCGCCTG 59.483 55.000 0.00 0.00 0.00 4.85
680 743 0.107831 TGCCTGTTTAGTTGTCGCCT 59.892 50.000 0.00 0.00 0.00 5.52
681 744 1.135689 CATGCCTGTTTAGTTGTCGCC 60.136 52.381 0.00 0.00 0.00 5.54
682 745 1.804151 TCATGCCTGTTTAGTTGTCGC 59.196 47.619 0.00 0.00 0.00 5.19
683 746 3.067106 AGTCATGCCTGTTTAGTTGTCG 58.933 45.455 0.00 0.00 0.00 4.35
684 747 6.743575 ATAAGTCATGCCTGTTTAGTTGTC 57.256 37.500 0.00 0.00 0.00 3.18
685 748 7.883311 ACTTATAAGTCATGCCTGTTTAGTTGT 59.117 33.333 12.50 0.00 32.86 3.32
686 749 8.268850 ACTTATAAGTCATGCCTGTTTAGTTG 57.731 34.615 12.50 0.00 32.86 3.16
705 768 9.653287 CAGATGACTTAAAACCAGTGACTTATA 57.347 33.333 0.00 0.00 0.00 0.98
706 769 8.375506 TCAGATGACTTAAAACCAGTGACTTAT 58.624 33.333 0.00 0.00 0.00 1.73
707 770 7.656137 GTCAGATGACTTAAAACCAGTGACTTA 59.344 37.037 5.72 0.00 41.65 2.24
708 771 6.483640 GTCAGATGACTTAAAACCAGTGACTT 59.516 38.462 5.72 0.00 41.65 3.01
709 772 5.992217 GTCAGATGACTTAAAACCAGTGACT 59.008 40.000 5.72 0.00 41.65 3.41
710 773 6.229561 GTCAGATGACTTAAAACCAGTGAC 57.770 41.667 5.72 0.00 41.65 3.67
742 805 9.120538 GCCTATTTGATTCCAATAAGTCACTTA 57.879 33.333 0.00 0.00 31.46 2.24
743 806 7.068716 GGCCTATTTGATTCCAATAAGTCACTT 59.931 37.037 0.00 0.00 31.46 3.16
744 807 6.547510 GGCCTATTTGATTCCAATAAGTCACT 59.452 38.462 0.00 0.00 31.46 3.41
745 808 6.513393 CGGCCTATTTGATTCCAATAAGTCAC 60.513 42.308 0.00 0.00 31.46 3.67
746 809 5.530915 CGGCCTATTTGATTCCAATAAGTCA 59.469 40.000 0.00 0.00 31.46 3.41
747 810 5.531287 ACGGCCTATTTGATTCCAATAAGTC 59.469 40.000 0.00 0.00 31.46 3.01
748 811 5.445964 ACGGCCTATTTGATTCCAATAAGT 58.554 37.500 0.00 0.00 31.46 2.24
749 812 7.228706 ACTTACGGCCTATTTGATTCCAATAAG 59.771 37.037 0.00 0.00 31.46 1.73
750 813 7.057894 ACTTACGGCCTATTTGATTCCAATAA 58.942 34.615 0.00 0.00 31.46 1.40
751 814 6.597562 ACTTACGGCCTATTTGATTCCAATA 58.402 36.000 0.00 0.00 31.46 1.90
752 815 5.445964 ACTTACGGCCTATTTGATTCCAAT 58.554 37.500 0.00 0.00 31.46 3.16
753 816 4.850680 ACTTACGGCCTATTTGATTCCAA 58.149 39.130 0.00 0.00 0.00 3.53
754 817 4.497291 ACTTACGGCCTATTTGATTCCA 57.503 40.909 0.00 0.00 0.00 3.53
755 818 6.930667 TTAACTTACGGCCTATTTGATTCC 57.069 37.500 0.00 0.00 0.00 3.01
756 819 7.227910 TGGATTAACTTACGGCCTATTTGATTC 59.772 37.037 0.00 0.00 0.00 2.52
757 820 7.057894 TGGATTAACTTACGGCCTATTTGATT 58.942 34.615 0.00 0.00 0.00 2.57
758 821 6.597562 TGGATTAACTTACGGCCTATTTGAT 58.402 36.000 0.00 0.00 0.00 2.57
759 822 5.991861 TGGATTAACTTACGGCCTATTTGA 58.008 37.500 0.00 0.00 0.00 2.69
760 823 5.277828 GCTGGATTAACTTACGGCCTATTTG 60.278 44.000 0.00 0.00 0.00 2.32
761 824 4.820173 GCTGGATTAACTTACGGCCTATTT 59.180 41.667 0.00 0.00 0.00 1.40
762 825 4.386711 GCTGGATTAACTTACGGCCTATT 58.613 43.478 0.00 0.00 0.00 1.73
763 826 4.004196 GCTGGATTAACTTACGGCCTAT 57.996 45.455 0.00 0.00 0.00 2.57
764 827 3.464111 GCTGGATTAACTTACGGCCTA 57.536 47.619 0.00 0.00 0.00 3.93
765 828 2.327200 GCTGGATTAACTTACGGCCT 57.673 50.000 0.00 0.00 0.00 5.19
766 829 1.306148 GGCTGGATTAACTTACGGCC 58.694 55.000 0.00 0.00 46.85 6.13
767 830 1.306148 GGGCTGGATTAACTTACGGC 58.694 55.000 0.00 0.00 34.56 5.68
768 831 1.134610 ACGGGCTGGATTAACTTACGG 60.135 52.381 0.00 0.00 0.00 4.02
769 832 1.931172 CACGGGCTGGATTAACTTACG 59.069 52.381 0.00 0.00 0.00 3.18
770 833 3.195661 CTCACGGGCTGGATTAACTTAC 58.804 50.000 0.00 0.00 0.00 2.34
771 834 2.169769 CCTCACGGGCTGGATTAACTTA 59.830 50.000 0.00 0.00 0.00 2.24
772 835 1.065418 CCTCACGGGCTGGATTAACTT 60.065 52.381 0.00 0.00 0.00 2.66
773 836 0.541863 CCTCACGGGCTGGATTAACT 59.458 55.000 0.00 0.00 0.00 2.24
774 837 3.080647 CCTCACGGGCTGGATTAAC 57.919 57.895 0.00 0.00 0.00 2.01
787 850 1.217779 GAGCAGAGAGTGGCCTCAC 59.782 63.158 3.32 0.00 43.93 3.51
788 851 1.986757 GGAGCAGAGAGTGGCCTCA 60.987 63.158 3.32 0.00 40.40 3.86
789 852 1.685421 AGGAGCAGAGAGTGGCCTC 60.685 63.158 3.32 0.00 38.04 4.70
790 853 1.988956 CAGGAGCAGAGAGTGGCCT 60.989 63.158 3.32 0.00 0.00 5.19
791 854 2.289532 ACAGGAGCAGAGAGTGGCC 61.290 63.158 0.00 0.00 0.00 5.36
792 855 1.079266 CACAGGAGCAGAGAGTGGC 60.079 63.158 0.00 0.00 0.00 5.01
793 856 0.972134 TTCACAGGAGCAGAGAGTGG 59.028 55.000 0.00 0.00 0.00 4.00
794 857 2.619147 CATTCACAGGAGCAGAGAGTG 58.381 52.381 0.00 0.00 0.00 3.51
795 858 1.066286 GCATTCACAGGAGCAGAGAGT 60.066 52.381 0.00 0.00 0.00 3.24
796 859 1.207570 AGCATTCACAGGAGCAGAGAG 59.792 52.381 0.00 0.00 0.00 3.20
797 860 1.066358 CAGCATTCACAGGAGCAGAGA 60.066 52.381 0.00 0.00 0.00 3.10
814 877 0.108329 TAAGTCGTGGGCTTAGCAGC 60.108 55.000 6.53 0.00 46.52 5.25
815 878 2.380084 TTAAGTCGTGGGCTTAGCAG 57.620 50.000 6.53 0.00 31.13 4.24
839 902 3.518590 GACGTGGGTTAGATTAGTGTGG 58.481 50.000 0.00 0.00 0.00 4.17
840 903 3.176708 CGACGTGGGTTAGATTAGTGTG 58.823 50.000 0.00 0.00 0.00 3.82
841 904 2.416431 GCGACGTGGGTTAGATTAGTGT 60.416 50.000 0.00 0.00 0.00 3.55
842 905 2.159282 AGCGACGTGGGTTAGATTAGTG 60.159 50.000 0.00 0.00 0.00 2.74
843 906 2.097825 AGCGACGTGGGTTAGATTAGT 58.902 47.619 0.00 0.00 0.00 2.24
844 907 2.358267 AGAGCGACGTGGGTTAGATTAG 59.642 50.000 3.17 0.00 0.00 1.73
876 939 2.224426 TGGGCTGGCGTGGTTTATATAG 60.224 50.000 0.00 0.00 0.00 1.31
877 940 1.769465 TGGGCTGGCGTGGTTTATATA 59.231 47.619 0.00 0.00 0.00 0.86
878 941 0.548989 TGGGCTGGCGTGGTTTATAT 59.451 50.000 0.00 0.00 0.00 0.86
889 952 4.453892 AGAATGGGCTGGGCTGGC 62.454 66.667 0.00 0.00 0.00 4.85
952 1028 0.391263 GCGGGGGACTCTGTGTAAAG 60.391 60.000 0.00 0.00 0.00 1.85
953 1029 1.122632 TGCGGGGGACTCTGTGTAAA 61.123 55.000 0.00 0.00 0.00 2.01
1041 1118 2.750637 GCGACGAGGAGGACCAGA 60.751 66.667 0.00 0.00 38.94 3.86
1324 1426 0.035630 CAGGGCAAAGCTAGCAGACT 60.036 55.000 18.83 3.08 0.00 3.24
1375 1515 3.612371 GATCTAGGCTACCGGCGCG 62.612 68.421 0.00 0.00 42.94 6.86
1376 1516 2.258897 GATCTAGGCTACCGGCGC 59.741 66.667 0.00 4.13 42.94 6.53
1378 1518 1.000052 GAACAGATCTAGGCTACCGGC 60.000 57.143 0.00 0.00 40.90 6.13
1379 1519 1.267261 CGAACAGATCTAGGCTACCGG 59.733 57.143 0.00 0.00 0.00 5.28
1380 1520 1.948145 ACGAACAGATCTAGGCTACCG 59.052 52.381 0.00 0.00 0.00 4.02
1381 1521 2.950309 TGACGAACAGATCTAGGCTACC 59.050 50.000 0.00 0.00 0.00 3.18
1394 1534 1.134521 AGGAACAAGCACTGACGAACA 60.135 47.619 0.00 0.00 0.00 3.18
1398 1551 0.583438 CACAGGAACAAGCACTGACG 59.417 55.000 0.00 0.00 36.17 4.35
1405 1558 1.507141 CGGGACACACAGGAACAAGC 61.507 60.000 0.00 0.00 0.00 4.01
1413 1566 4.394920 ACTTTATTATTGCGGGACACACAG 59.605 41.667 0.00 0.00 0.00 3.66
1426 1579 9.726438 CCCCGATTGATTCTCTACTTTATTATT 57.274 33.333 0.00 0.00 0.00 1.40
1427 1580 8.881262 ACCCCGATTGATTCTCTACTTTATTAT 58.119 33.333 0.00 0.00 0.00 1.28
1522 1681 1.400494 GCTGAAACAACGACCTTGTGT 59.600 47.619 0.00 0.00 42.70 3.72
1523 1682 1.400142 TGCTGAAACAACGACCTTGTG 59.600 47.619 0.00 0.00 42.70 3.33
1561 1722 3.500558 TCAGAGAGACAGAAAGATGCG 57.499 47.619 0.00 0.00 0.00 4.73
1568 1729 3.075148 ACGAACGATCAGAGAGACAGAA 58.925 45.455 0.14 0.00 0.00 3.02
1583 1744 3.781341 TTTAGTAGCAGCAAACGAACG 57.219 42.857 0.00 0.00 0.00 3.95
1586 1748 4.239304 TCGAATTTAGTAGCAGCAAACGA 58.761 39.130 0.00 0.00 0.00 3.85
1587 1749 4.577687 TCGAATTTAGTAGCAGCAAACG 57.422 40.909 0.00 0.00 0.00 3.60
1593 1755 7.010923 AGCATTTCTCTTCGAATTTAGTAGCAG 59.989 37.037 0.00 0.00 0.00 4.24
1607 1777 7.020010 CAGTCACAACAATAGCATTTCTCTTC 58.980 38.462 0.00 0.00 0.00 2.87
1632 1802 7.251281 GTCTCCTGAAATTAAAATGTACCAGC 58.749 38.462 0.00 0.00 0.00 4.85
1634 1804 7.162761 TCGTCTCCTGAAATTAAAATGTACCA 58.837 34.615 0.00 0.00 0.00 3.25
1635 1805 7.605410 TCGTCTCCTGAAATTAAAATGTACC 57.395 36.000 0.00 0.00 0.00 3.34
1652 1822 1.007580 GGCTTCGGAAATTCGTCTCC 58.992 55.000 0.00 0.00 0.00 3.71
1658 1828 1.226018 CACGCGGCTTCGGAAATTC 60.226 57.895 12.47 0.00 0.00 2.17
1664 1834 1.151777 ATATGTTCACGCGGCTTCGG 61.152 55.000 12.47 0.00 0.00 4.30
1674 1844 7.719778 TCATGTATGCAGAAGATATGTTCAC 57.280 36.000 14.46 6.97 0.00 3.18
1682 1852 8.043113 TCAACTTAGTTCATGTATGCAGAAGAT 58.957 33.333 0.00 0.00 0.00 2.40
1685 1855 6.092670 GCTCAACTTAGTTCATGTATGCAGAA 59.907 38.462 0.00 0.00 0.00 3.02
1690 1860 9.708222 GTTAATGCTCAACTTAGTTCATGTATG 57.292 33.333 0.00 0.00 0.00 2.39
1720 1893 6.992664 AGTTTATGCTCAGAGTCTATGGAT 57.007 37.500 0.00 0.00 0.00 3.41
1731 1904 8.958043 GTTTTGTACAGAAAAGTTTATGCTCAG 58.042 33.333 0.00 0.00 32.91 3.35
1739 1912 9.758651 ACAGAAAAGTTTTGTACAGAAAAGTTT 57.241 25.926 15.46 15.46 44.63 2.66
1858 2031 5.519927 CGGAAAAGAAGACAATGCTTTTTGT 59.480 36.000 0.00 0.80 40.70 2.83
1888 2062 8.637986 GGCCTTTTTCCCTTTTCAAATAAAAAT 58.362 29.630 0.00 0.00 0.00 1.82
1891 2065 6.065374 GGGCCTTTTTCCCTTTTCAAATAAA 58.935 36.000 0.84 0.00 40.66 1.40
1894 2068 4.098914 GGGCCTTTTTCCCTTTTCAAAT 57.901 40.909 0.84 0.00 40.66 2.32
1904 2078 0.251341 TGCAGAGAGGGCCTTTTTCC 60.251 55.000 7.89 0.00 0.00 3.13
1905 2079 1.747924 GATGCAGAGAGGGCCTTTTTC 59.252 52.381 7.89 6.52 0.00 2.29
1908 2082 1.222936 CGATGCAGAGAGGGCCTTT 59.777 57.895 7.89 0.00 0.00 3.11
1909 2083 1.687146 TCGATGCAGAGAGGGCCTT 60.687 57.895 7.89 0.00 0.00 4.35
1912 2086 2.107953 GGTCGATGCAGAGAGGGC 59.892 66.667 0.00 0.00 0.00 5.19
2182 2369 3.258372 TGTCAAGCTCTACTTCATCCGTT 59.742 43.478 0.00 0.00 36.04 4.44
2183 2370 2.826128 TGTCAAGCTCTACTTCATCCGT 59.174 45.455 0.00 0.00 36.04 4.69
2184 2371 3.510388 TGTCAAGCTCTACTTCATCCG 57.490 47.619 0.00 0.00 36.04 4.18
2185 2372 6.560253 TTTTTGTCAAGCTCTACTTCATCC 57.440 37.500 0.00 0.00 36.04 3.51
2205 2392 8.834004 GGTTTATTAGACCCCCTCTTATTTTT 57.166 34.615 0.00 0.00 0.00 1.94
2218 2405 3.632643 TCCGTTGGGGTTTATTAGACC 57.367 47.619 0.00 0.00 37.00 3.85
2219 2406 4.773013 TCATCCGTTGGGGTTTATTAGAC 58.227 43.478 0.00 0.00 37.00 2.59
2220 2407 5.045432 ACTTCATCCGTTGGGGTTTATTAGA 60.045 40.000 0.00 0.00 37.00 2.10
2221 2408 5.190677 ACTTCATCCGTTGGGGTTTATTAG 58.809 41.667 0.00 0.00 37.00 1.73
2222 2409 5.182169 ACTTCATCCGTTGGGGTTTATTA 57.818 39.130 0.00 0.00 37.00 0.98
2223 2410 4.042271 ACTTCATCCGTTGGGGTTTATT 57.958 40.909 0.00 0.00 37.00 1.40
2224 2411 3.732048 ACTTCATCCGTTGGGGTTTAT 57.268 42.857 0.00 0.00 37.00 1.40
2225 2412 3.839490 TCTACTTCATCCGTTGGGGTTTA 59.161 43.478 0.00 0.00 37.00 2.01
2226 2413 2.640826 TCTACTTCATCCGTTGGGGTTT 59.359 45.455 0.00 0.00 37.00 3.27
2227 2414 2.236395 CTCTACTTCATCCGTTGGGGTT 59.764 50.000 0.00 0.00 37.00 4.11
2228 2415 1.831736 CTCTACTTCATCCGTTGGGGT 59.168 52.381 0.00 0.00 37.00 4.95
2229 2416 1.473434 GCTCTACTTCATCCGTTGGGG 60.473 57.143 0.00 0.00 37.02 4.96
2230 2417 1.473434 GGCTCTACTTCATCCGTTGGG 60.473 57.143 0.00 0.00 0.00 4.12
2231 2418 1.802880 CGGCTCTACTTCATCCGTTGG 60.803 57.143 0.00 0.00 35.75 3.77
2232 2419 1.560923 CGGCTCTACTTCATCCGTTG 58.439 55.000 0.00 0.00 35.75 4.10


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.