>input_sequence_83552
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------------------------------------ATGGCGCTCTCTGGTCGCATGGCCGCATCCGCCCTCCTCCTTCT
GGTCCTCCTCGTCGCCACAGGCACGTCCCGCCCAA-------CCCCACTCTTCCCATCA------------------ACG
ATGCTTAATTTGTCACCGTGGTTTTATTCATTCATGTGCACTGCATGCAGAGATGGGGGCGCCGACGAGGAAGGTGGCGG
AGGCGCGGGACTGCCTGTCCAAGAGCCACAAGTTCAAGGGCGCGTGCCTCAGCAGCAGCAACTGCGCCAGCATCTGCCGC
ACCGAGAACTTCCCCGGCGGCGAGTGCAAGCTCGACTCCTTCGCGCGCAAGTGCTTCTGCAAGAGAGTCTGCTAG-----
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>chr6A_1_TraesCS6A01G076800
ACTAACTTAGGTGAGTGTTTAGTTTATGCCACACTTTACGCAAGCCATTTTTGGATCCCACATGGCATACACATAAAAAA
TGTGATAAGATTCCTTTAGACTTGCCAACTTGTGGCTCTCATTTTGATGAACTAACTTTAGACAAGCTTGACAAAAATAT
GTGATAAGATATGGCAATGCTTGTCCTATAACCAAACAACCCCACGTCTCGCTGATCGACGTCGTGATCTACGAGATCCA
CGCGTCCTCGTCGTCTCGCCGATCGGCATGTGTAGG------------------------TACTGAAATAACTAGGCAGA
CAGGGAAAAA-GTTGGGAGAAAGCAATCATTCCAGCATATGACAGGCTCGTGATCATGAGTTTTGCGTCTGACCTTGATG
--------------------------GGAAATTCCTTCAACAGGGCACTGCATGCTCTG-----------GCCTGCCTGA
GTAGCCCGTGAGATACCGATGTGGAGTGTGAGCATCAGTAAGGCCCTGTTTAGTTTCAAATAAGTCACCAACTTATAAGT
CGAAAAATGCAAAAAAAGACTTATTTTGCTAAATAGACCTAACTTATAAGTCATCCCAACTTATAAGTCATAAGTTGCTT
CACCCCAACTTAAAACTTATAAGTCATCGCCTTTTACATGGGTCCATCATCTTTACATTAAAAAAACAAAGTAGAAAAAT
GTGTTCAGGTGACTTATAAGTCAGGCGACAACTAAACAGGCATGACTTATAAGTCACTGGTTTTAAGTCATCTGACTTAT
AAGTTAAGTGACTTATTGGAATCAAATAGGCCGTAAGTTAATCCAGCCCGTGAGGCCACTCTCTGCTCCTGTGAATGCTG
CTAAGCCCACGACTTAAACACCCACACTAATCTAACCCACGTCGCTCTGCTCCGCCTACTATATAAACCACGCCAGCCCA
GCCCATTCTCTGCATCTTACT-------------TGTGTCCATTCTCCTCCATTCGCTTCGCTAGCTCTTTACACAGAGT
CCCCCGC-AGCAGGCTAGGCTAGCAGAAGCAGATCGATGGCGCTCTCTGGTCGCATGGCCGCATCCGCCCTCCTCCTTCT
GGTCCTCCTCGTCGCCACAGGCACGTCCCGCCCAA-------CCCCACTCTTCCCATCA------------------ACG
ATGCTTAATTTGTCACCGTGGTTTTATTCATTCATGTGCACTGCATGCAGAGATGGGGGCGCCGACGAGGAAGGTGGCGG
AGGCGCGGGACTGCCTGTCCAAGAGCCACAAGTTCAAGGGCGCGTGCCTCAGCAGCAGCAACTGCGCCAGCATCTGCCGC
ACCGAGAACTTCCCCGGCGGCGAGTGCAAGCTCGACTCCTTCGCGCGCAAGTGCTTCTGCAAGAGAGTCTGCTAGCTTTG
CCCTGCTCGATGCTACC--------------------------------------TACGGTTGCTAGATCATCCCGCGCC
GGTAGCCTAGATCT-------------GTTCGTCAGTGCTTGTTCCTGTGTGTCCCGCAAT---AATAAAGTAGAGAATC
AATCGGGGTCTCGATGGTCTAGTTGGCCG---TAAGTCGTGCTTTTCTTTTGCTGCTTTGTGTGTGTTTGTTATGTGACA
AC--ACAAGGTCGTTGTTTCAGCATGGACGGACATGTGCAACGCATCTTTCTGTCTCTCTGATC-GTTCGTTTGCTGCTA
CTAAA--------TTCGAAGAGAAATGCTATTGTTGTGACTGCTGGTACATTTTAATTTCAGGAGACGAATTTCCGAAGC
CGCGTGAACATATCTTCTGCATACATG---AACTAAGTTGAGCATTAACATGATCCATAGACTCTGAGCATAAACTTTTC
TGTACAAAACTTTTCTGTTTAAGGTAAATTTTATTATAGGTATTCAGATTTTATTAAACCAATAATACCATTTTGTTTCC
CGTATGATTTACGTGTTCAGTTCATAATAGAC-AAAAAGCATTGTCTTCTTTTCCGTCGATATTTTTATTTGAAAAGGGA
AAAAGGCCCT----CTCTGCATCGACCCGGATTAATCGAGGTACTTTATGTCTTAAGAGGTACTACCTCGCCCGGGTTTA
TTAGGCCTCCTCTTTATTTTGCTAAAGTTTGACCATATATTTAATTAATAAAAT--------TATCTGGCAAAAATTATG
TCATTAGAAACCTCTTTATTCCAATACAAATCCAATAAAA-TACCTTTTGTAGAATGTATTTTGGATTTTGTTAGTCTAG
TAAATGGTCAAAATTTGACAAAAAATAAGAGGGGGTCTAATAAACCCCAACGGATGAAGTAGAGCTTGACAAAAAATAAG
AGGGGGTCTAATAAACCCCAACGGATGAAGTAGAGCCGTATCCAAAATAAT--------AACTTTAATTTGGACTATCCT
TGCCTGAATCAAAATCTAATTGTCTATTTTGTGAGGAAGTGAAAAAAT
>chr6B_203
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------------------------------------------CACGTCTTGCCGATCGACCTCGTGATCCACGAGGTCCA
CGCGCCCTCGTCGTCTCGCCGATCGGCATGTGTAGGTACGTACGGCTCTGCCTCCCGTCGTACTGAAATGACTAGGCAGG
CAGGGAAAAAAGTTGGGAGAAGCCAATCATTCCAGCATATGCCAGGCTCGT-------------------GACATTGATG
GCCGCTCCACAGCCACCGGTTTCGGCGGAAATTCCTTCAAGAGGGCACTGCATGCTCTGATAGGCCCCCGGCCTGCCTGA
CCAGCCCGTGAGCTACCGATGTGGCCACTCCTCTGGTG------------------------------------------
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------------------------------------------------------------CTCTGCTGCTGTGAA---TG
CTAAGCCCACGACTTAAACAC------TAATCTAACCCACGTCGCTCTGGTCCGCCTA---TATAAACCCCACCAGCCCA
GCCCATTCTCTGCATCTCTCTTACTTGTGTTGTGTGTGTCCATTCTCTTCCATTCGCTTCGCTAGCT--TTACACA--GT
CCCCCGT-AGC-----AGGCTAGCAGAAGCAGATCGATGGCGCTCTCTCGCCGCATGGCCGCGTCCGCCCTCCTCATGCT
GGTCCTCCTCGTCGCCACAGGCACGTCCCGCTCCCG-CCTAACCCCACTCTTCCCCTCA------------------ACG
ATGCTCAATTGATTACTGTGGC----TTCATTCATGTGCACTGCATGCAGAGATGGGGACGCCGACGATGAAGGCGGCGG
AGGCGCGGGACTGCCTGTCGCAGAGCCACAAGTTCAAGGGCTCATGCCTCAGCAGCAGCAACTGCGCCAGCATCTGCCGC
ACCGAGAACTTCCCCGGCGGCGAGTGCAAGCTGGAGTCCTTCGCGCGCAAGTGCTTCTGCAAGAGGGTCTGCTAGCTG-G
CCCTGCT-------------------------------------------------------------------------
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>chrUn_848
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-----------------------------ATCTAACCCACGTCGCTCTGCTCCGCCTA---TATAAACCACACCAGCCCG
GCCCATTCTCTGCATCTTACT-------------TGTGTCCATTCTCCTCCATTCGCTTCGCTAGCT--TTACACACAGT
CCCCCGGTAGCAGGCTAGCAGA----AAGCAGATCGATGTTGCTCTCTGGTCGCATGGCCGCATCCGCCCTCCTCCTGCT
CGTCCTCCTCGTCGCCACAGGCACGTCCCACTCCCG-CCCAATCCCGCTCTTCCCAGCGTCAGCGAGCGAGCTGTGGATG
ATGCCTAATTTGTCACCGTGATTTTATTCATTCATGTGCACTGCATGCAGAGATGGGGACGCCGACGAGGAAGGTGGCGG
AGGCGCGGGACTGCCTGTCCAAGAGCCACAAGTTCAAGGGCGCGTGCCTCAGCAGCAGCAACTGCGCCAGCATCTGCCGC
ACCGAGAACTTCCCCGGCGGCGAGTGCAAGCTCGACTCCTTCGCGCGCAAGTGCTTCTGCAAGAGGGTCTGCTAGCCGTG
CTCGCT-------CGGCCCGGCCGGCGCCGCGAGGTCCGATGCTAGCTACGGTAGTACGGTTGCTAGATCATC-------
--TTCGTCAGTCAGTGTACTTGTTCACGTTTGTCAGTACTTGTTCTTGTGTGTCCCG---T---AATAAAGTAGAGAATC
AATCGGGGTCTCGATGGTCTAGTTTGGCAGTATAAGTCGTGCTTTTCTTTTGCTGCTTTGTGTCATTGTATGTGTTGTAA
TGTGACAAGGTCGTTGTTTCAGCATGGACGGGCATGTGCAATGCATCTCTCTGTCTCTCTGATT-GTCTGTTTGGTGCTA
CTAAATCAGCATCTTCAAAGAGAAATGCTATTGTTGTGACTCC---TACATTTTAATTTCACGAGACAAATTTTCGAAGC
CGCTTGAACATTTCGTCTGTATACATGAACAACTAAGTTGAGCATTAACATGGTCCATAGACTGTGAGCGCGAACTTTTC
TGTACATTTTTTTTCTGTTTTATGTAAATTTTATTA-AGGTATTCACATTTTATTAAACCAATAATACCATTTTGTTTCC
CCTATGATTTACGTGTTCAGTTCACAATAACCAAAAAAGCATTGTCTTCTTTTCCTTTGATTTTATTTTTTCTTTTGAAA
AGGAGACCCTCGGCCTCTGCATCGACCCGGATTAATTGAGATACATTATTTCTTAAGAGGTACTACCTTGTCCGGGTTTA
TTTGACCCCTCCTATTTGA-GCTAAAGTTTGACCATATATTTAATTAATAAAATATAAATTATATGTCACAAAAATTATA
CCATTGGAAACCTCT---TTCCAATACAAATCCAATAATC-TGCCTTTTGTAGCATGTAATTTGTATTTCGCTAGTCAAA
TAAATAGTAAAAAATTG---------------------------------------------------------------
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>chrUn_848
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-----------------------------ATCTAACCCACGTCGCTCTGCTCCGCCTA---TATAAACCACACCAGCCCG
GCCCATTCTCTGCATCTTACT-------------TGTGTCCATTCTCCTCCATTCGCTTCGCTAGCT--TTACACACAGT
CCCCCGGTAGCAGGCTAGCAGA----AAGCAGATCGATGTTGCTCTCTGGTCGCATGGCCGCATCCGCCCTCCTCCTGCT
CGTCCTCCTCGTCGCCACAGGCACGTCCCACTCCCG-CCCAATCCCGCTCTTCCCAGCGTCAGCGAGCGAGCTGTGGATG
ATGCCTAATTTGTCACCGTGATTTTATTCATTCATGTGCACTGCATGCAGAGATGGGGACGCCGACGAGGAAGGTGGCGG
AGGCGCGGGACTGCCTGTCCAAGAGCCACAAGTTCAAGGGCGCGTGCCTCAGCAGCAGCAACTGCGCCAGCATCTGCCGC
ACCGAGAACTTCCCCGGCGGCGAGTGCAAGCTCGACTCCTTCGCGCGCAAGTGCTTCTGCAAGAGGGTCTGCTAGCCGTG
CTCGCT-------CGGCCCGGCCGGCGCCGCGAGGTCCGATGCTAGCTACGGTAGTACGGTTGCTAGATCATC-------
--TTCGTCAGTCAGTGTACTTGTTCACGTTTGTCAGTACTTGTTCTTGTGTGTCCCG---T---AATAAAGTAGAGAATC
AATCGGGGTCTCGATGGTCTAGTTTGGCAGTATAAGTCGTGCTTTTCTTTTGCTGCTTTGTGTCATTGTATGTGTTGTAA
TGTGACAAGGTCGTTGTTTCAGCATGGACGGGCATGTGCAATGCATCTCTCTGTCTCTCTGATT-GTCTGTTTGGTGCTA
CTAAATCAGCATCTTCAAAGAGAAATGCTATTGTTGTGACTCC---TACATTTTAATTTCACGAGACAAATTTTCGAAGC
CGCTTGAACATTTCGTCTGTATACATGAACAACTAAGTTGAGCATTAACATGGTCCATAGACTGTGAGCGCGAACTTTTC
TGTACATTTTTTTTCTGTTTTATGTAAATTTTATTA-AGGTATTCACATTTTATTAAACCAATAATACCATTTTGTTTCC
CCTATGATTTACGTGTTCAGTTCACAATAACCAAAAAAGCATTGTCTTCTTTTCCTTTGATTTTATTTTTTCTTTTGAAA
AGGAGACCCTCGGCCTCTGCATCGACCCGGATTAATCGAGATACTTTATGTCTTAAGAGGTACTACCTCGCCCGGGTTTA
TTAGGCCTCCTCTTTATTTTGCTAAAGTTTGACCATATATTTAATTAATAAAAT--------TATCTGGCAAAAATTATG
CCATTAGAAACCTCT---TTCCAATACAAATCCAATAAAAATACCTTTTGTAGCATGTATTTTGGATTTTGTTAGTCTAG
TAAATGGTCAAAAATTGAC-AAAAATAAGAGTGGGTCTAATAAACCCCG-------------------------------
--------------------ACGGATGAAGTAGAGCCGTATCCAAAATAATGTTAGCTTAACTTTAATTTGGACTATCCT
TACCTGAATCAAAATCTAATTGTCTCTTTTGTGAGGAAGTGAGAAA--
>chr6B_981
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----------------AGGCTAGCAGAAGCAGATCGATGGCGCTCTCTGGTCGCATGGCCGCATCCGCCCTCCTCCTGCT
CCTCCTCCTCCTCGCCACAGGCACGTCCCGCCCAAGTCCCAACCCCGCTCTTCCCAGCG--AGCGAGCGAGCTGTGGATG
ATGCTTAATTTGTCACTGTGGT----TTCATTCATGTGCACTGCATGCAGAGATGGGGACGCCGACGAGGAAGGTGGCGG
AGGCGCGGGACTGCCTGTCCAAGAGCCACAAGTTCAAGGGCGCGTGCCTCAGCAGCAGCAACTGCGCCAGCATCTGCCGC
ACCGAGAACTTCCCCGGCGGCGAGTGCAAGCTCGACTCCTTCGCGCGCAAGTGCTTCTGCAAGAGGGTCTGCTAGCTA-G
CCCTGCTCGCCCCCGGCCTGGCCGGCGCCGCGACGTCCGATGCTAGCTACTCCACATGTTGCTGGCATCGTGTGTCCCGT
AATTTGTTCGTCAGTGTATGAGTTCAT-----TCAGTACTTGTTCTTGTGTGTCCCG---TGATAATAAAGTAGAGAATC
AATCGGGGTCTCGATGGTCTAGTTGGCCG---TAAGTCGTGTTTTTCTTTTGCTGCTTTCTGTGTGTGTGGGGGGGGTAA
TGTAACAAGGTCGCTGTTTCAGCATGGACGGACATGTGCAATGCATCTCTCTCTATCTCTGATTCGTCTGTTTGGTGCTA
CTAAA--------CACAAAGAGAAATGCTATTGTTGTGACT---------------------------------------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-------S--S-------S--------S-----S----
----S----------------------------------------------------------------S---------S
---------------------SS------------------S---------SSSSSSSSSSSSSSSSSSS---S------
----------------------------------------S---------------------------------------
SS----------S-----------SSSS-SSS-SSSS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-------S-------SSS--
---------------------SSSSSS-------------------------------SSS----------S--------
-------------------------------------------------------------------SS-------S---
------S----------------------------------------------------------------------S--
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----------------------------------------------------------S---------------------
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-----------------------------------------------------------------S-----------S--
---------SSS-SSS---------------------------------------------------------SSS-SSS
SS-SSSS---SSSS----------------S------S-------S-----------SSS--------------------
-------------------------------------------------------------------S---SSS---SS-
SS---------------------------------------S------S--------------S---SS-----S-----
----------------S------------------------S-SSS---------------S-----S-----S------
---S-------S--S----S--------------------------------S----------S-----SSS--------
------SSSS----------S-S-------------S---------S---------------------------------
-S----------------------S----SS------------------------S-S---S--S--S---SSSSS-SS-
-SS--S----------------------------------S---------------------------------------
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S--------------SSS-----------------------------------S--------------------------
-------------S-----S-----------S----------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSS------------------------------------------------------------
-S-----------------------S----------------S---SS
>forward_230
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--------------------------------------------------GCTGATCGACGTCGTGATCT----------
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>reverse_1426
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-----------------------------------------------------------------AGTCTGCTAGCTTTG
CCCTG---------------------------------------------------------------------------
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>forward_762
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----------------------AGGCGACAACTAAACAGGCA--------------------------------------
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>reverse_2078
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-----------------------------------------------------------------------------GGA
AAAAGGCCCTCTCTGCA---------------------------------------------------------------
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