Multiple sequence alignment - TraesCS6A01G062900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G062900 chr6A 100.000 3149 0 0 1 3149 33551300 33554448 0.000000e+00 5816.0
1 TraesCS6A01G062900 chr6D 92.490 1944 84 11 878 2820 28983558 28981676 0.000000e+00 2724.0
2 TraesCS6A01G062900 chr6D 90.433 554 26 10 147 700 28984350 28983824 0.000000e+00 704.0
3 TraesCS6A01G062900 chr6D 93.827 162 8 2 1 161 28990164 28990004 3.140000e-60 243.0
4 TraesCS6A01G062900 chr6D 98.361 122 2 0 698 819 28983781 28983660 6.840000e-52 215.0
5 TraesCS6A01G062900 chr6D 94.017 117 7 0 2956 3072 28981498 28981382 8.970000e-41 178.0
6 TraesCS6A01G062900 chr7A 82.344 1263 181 24 888 2142 15678370 15677142 0.000000e+00 1059.0
7 TraesCS6A01G062900 chr7A 100.000 28 0 0 2181 2208 15668709 15668682 6.000000e-03 52.8
8 TraesCS6A01G062900 chr4A 83.205 1173 161 24 993 2159 718025097 718026239 0.000000e+00 1042.0
9 TraesCS6A01G062900 chr4A 74.831 1033 200 39 1014 2033 716992048 716991063 2.260000e-111 412.0
10 TraesCS6A01G062900 chr7D 77.721 1369 253 34 888 2244 17222286 17223614 0.000000e+00 791.0
11 TraesCS6A01G062900 chr7D 77.535 1144 235 18 1001 2136 17809071 17810200 0.000000e+00 669.0
12 TraesCS6A01G062900 chr7D 86.408 206 28 0 1772 1977 17833924 17834129 3.160000e-55 226.0
13 TraesCS6A01G062900 chr7D 91.071 112 10 0 2605 2716 387916761 387916872 5.440000e-33 152.0
14 TraesCS6A01G062900 chr2B 90.541 148 12 1 2596 2741 37230882 37231029 8.910000e-46 195.0
15 TraesCS6A01G062900 chr2B 89.865 148 13 1 2596 2741 37214318 37214465 4.150000e-44 189.0
16 TraesCS6A01G062900 chr2B 89.865 148 13 1 2596 2741 37248040 37248187 4.150000e-44 189.0
17 TraesCS6A01G062900 chrUn 80.973 226 38 5 2594 2817 67313881 67314103 1.160000e-39 174.0
18 TraesCS6A01G062900 chrUn 80.973 226 38 5 2594 2817 248992426 248992648 1.160000e-39 174.0
19 TraesCS6A01G062900 chrUn 80.973 226 38 5 2594 2817 315257424 315257202 1.160000e-39 174.0
20 TraesCS6A01G062900 chr5B 80.973 226 38 5 2594 2817 672470460 672470238 1.160000e-39 174.0
21 TraesCS6A01G062900 chr1A 78.733 221 35 10 2604 2817 41832016 41832231 1.520000e-28 137.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G062900 chr6A 33551300 33554448 3148 False 5816.00 5816 100.00000 1 3149 1 chr6A.!!$F1 3148
1 TraesCS6A01G062900 chr6D 28981382 28984350 2968 True 955.25 2724 93.82525 147 3072 4 chr6D.!!$R2 2925
2 TraesCS6A01G062900 chr7A 15677142 15678370 1228 True 1059.00 1059 82.34400 888 2142 1 chr7A.!!$R2 1254
3 TraesCS6A01G062900 chr4A 718025097 718026239 1142 False 1042.00 1042 83.20500 993 2159 1 chr4A.!!$F1 1166
4 TraesCS6A01G062900 chr4A 716991063 716992048 985 True 412.00 412 74.83100 1014 2033 1 chr4A.!!$R1 1019
5 TraesCS6A01G062900 chr7D 17222286 17223614 1328 False 791.00 791 77.72100 888 2244 1 chr7D.!!$F1 1356
6 TraesCS6A01G062900 chr7D 17809071 17810200 1129 False 669.00 669 77.53500 1001 2136 1 chr7D.!!$F2 1135

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
498 499 0.096976 CGCGTTGCCACTTTGATAGG 59.903 55.0 0.0 0.0 0.0 2.57 F
870 951 0.246635 TCGCTTCTCTACCTGTTGCC 59.753 55.0 0.0 0.0 0.0 4.52 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1362 1472 0.996583 GACCATAGGAAACACCCCCA 59.003 55.0 0.0 0.0 40.05 4.96 R
2664 2798 0.035458 GATTGGGGATCGGCTAGGTG 59.965 60.0 0.0 0.0 0.00 4.00 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
69 70 5.659440 AAAACAGAAAGCAAAGTCCAAGA 57.341 34.783 0.00 0.00 0.00 3.02
70 71 5.659440 AAACAGAAAGCAAAGTCCAAGAA 57.341 34.783 0.00 0.00 0.00 2.52
71 72 5.859205 AACAGAAAGCAAAGTCCAAGAAT 57.141 34.783 0.00 0.00 0.00 2.40
72 73 6.959639 AACAGAAAGCAAAGTCCAAGAATA 57.040 33.333 0.00 0.00 0.00 1.75
73 74 7.530426 AACAGAAAGCAAAGTCCAAGAATAT 57.470 32.000 0.00 0.00 0.00 1.28
74 75 7.530426 ACAGAAAGCAAAGTCCAAGAATATT 57.470 32.000 0.00 0.00 0.00 1.28
75 76 8.635765 ACAGAAAGCAAAGTCCAAGAATATTA 57.364 30.769 0.00 0.00 0.00 0.98
76 77 8.734386 ACAGAAAGCAAAGTCCAAGAATATTAG 58.266 33.333 0.00 0.00 0.00 1.73
77 78 8.734386 CAGAAAGCAAAGTCCAAGAATATTAGT 58.266 33.333 0.00 0.00 0.00 2.24
78 79 9.959721 AGAAAGCAAAGTCCAAGAATATTAGTA 57.040 29.630 0.00 0.00 0.00 1.82
91 92 6.349300 AGAATATTAGTATATGCTTGGCCCG 58.651 40.000 0.00 0.00 29.59 6.13
92 93 2.178912 TTAGTATATGCTTGGCCCGC 57.821 50.000 0.00 3.19 0.00 6.13
93 94 1.348064 TAGTATATGCTTGGCCCGCT 58.652 50.000 14.34 4.13 0.00 5.52
94 95 0.474184 AGTATATGCTTGGCCCGCTT 59.526 50.000 14.34 10.79 0.00 4.68
95 96 0.593128 GTATATGCTTGGCCCGCTTG 59.407 55.000 14.34 0.00 0.00 4.01
96 97 0.182537 TATATGCTTGGCCCGCTTGT 59.817 50.000 14.34 9.36 0.00 3.16
97 98 0.182537 ATATGCTTGGCCCGCTTGTA 59.817 50.000 14.34 6.38 0.00 2.41
98 99 0.182537 TATGCTTGGCCCGCTTGTAT 59.817 50.000 14.34 3.47 0.00 2.29
99 100 1.386525 ATGCTTGGCCCGCTTGTATG 61.387 55.000 14.34 0.00 0.00 2.39
100 101 2.800736 CTTGGCCCGCTTGTATGC 59.199 61.111 0.00 0.00 0.00 3.14
101 102 2.753849 TTGGCCCGCTTGTATGCC 60.754 61.111 0.00 0.00 44.27 4.40
103 104 4.849310 GGCCCGCTTGTATGCCGA 62.849 66.667 0.00 0.00 33.59 5.54
104 105 3.272334 GCCCGCTTGTATGCCGAG 61.272 66.667 0.00 0.00 0.00 4.63
105 106 2.588877 CCCGCTTGTATGCCGAGG 60.589 66.667 0.00 0.00 0.00 4.63
106 107 3.272334 CCGCTTGTATGCCGAGGC 61.272 66.667 7.26 7.26 42.35 4.70
107 108 2.202932 CGCTTGTATGCCGAGGCT 60.203 61.111 15.75 3.70 42.51 4.58
108 109 1.815421 CGCTTGTATGCCGAGGCTT 60.815 57.895 15.75 11.51 42.51 4.35
109 110 1.766143 CGCTTGTATGCCGAGGCTTC 61.766 60.000 15.75 6.29 42.51 3.86
110 111 0.744414 GCTTGTATGCCGAGGCTTCA 60.744 55.000 15.75 8.68 42.51 3.02
111 112 1.293924 CTTGTATGCCGAGGCTTCAG 58.706 55.000 15.75 3.12 42.51 3.02
112 113 0.744414 TTGTATGCCGAGGCTTCAGC 60.744 55.000 15.75 0.00 42.51 4.26
122 123 3.673599 GCTTCAGCCCAGTCCAAC 58.326 61.111 0.00 0.00 34.31 3.77
123 124 1.973812 GCTTCAGCCCAGTCCAACC 60.974 63.158 0.00 0.00 34.31 3.77
124 125 1.455849 CTTCAGCCCAGTCCAACCA 59.544 57.895 0.00 0.00 0.00 3.67
125 126 0.178992 CTTCAGCCCAGTCCAACCAA 60.179 55.000 0.00 0.00 0.00 3.67
126 127 0.467290 TTCAGCCCAGTCCAACCAAC 60.467 55.000 0.00 0.00 0.00 3.77
127 128 1.152777 CAGCCCAGTCCAACCAACA 60.153 57.895 0.00 0.00 0.00 3.33
128 129 1.151450 AGCCCAGTCCAACCAACAG 59.849 57.895 0.00 0.00 0.00 3.16
129 130 2.564721 GCCCAGTCCAACCAACAGC 61.565 63.158 0.00 0.00 0.00 4.40
130 131 2.260869 CCCAGTCCAACCAACAGCG 61.261 63.158 0.00 0.00 0.00 5.18
131 132 2.639286 CAGTCCAACCAACAGCGC 59.361 61.111 0.00 0.00 0.00 5.92
132 133 2.594592 AGTCCAACCAACAGCGCC 60.595 61.111 2.29 0.00 0.00 6.53
133 134 2.904866 GTCCAACCAACAGCGCCA 60.905 61.111 2.29 0.00 0.00 5.69
134 135 2.124109 TCCAACCAACAGCGCCAA 60.124 55.556 2.29 0.00 0.00 4.52
135 136 2.027460 CCAACCAACAGCGCCAAC 59.973 61.111 2.29 0.00 0.00 3.77
136 137 2.027460 CAACCAACAGCGCCAACC 59.973 61.111 2.29 0.00 0.00 3.77
137 138 3.223589 AACCAACAGCGCCAACCC 61.224 61.111 2.29 0.00 0.00 4.11
176 177 2.431942 TCGCTCCGCCTCGTTTTC 60.432 61.111 0.00 0.00 0.00 2.29
181 182 0.951040 CTCCGCCTCGTTTTCAAGCT 60.951 55.000 0.00 0.00 0.00 3.74
187 188 2.429069 CGTTTTCAAGCTGCCGCC 60.429 61.111 0.00 0.00 36.60 6.13
202 203 2.892425 GCCGGAGAAGGACGCATG 60.892 66.667 5.05 0.00 0.00 4.06
289 290 2.238521 TGCTAGCTTTCCCCTTGTTTG 58.761 47.619 17.23 0.00 0.00 2.93
292 293 3.069586 GCTAGCTTTCCCCTTGTTTGTTT 59.930 43.478 7.70 0.00 0.00 2.83
293 294 3.819564 AGCTTTCCCCTTGTTTGTTTC 57.180 42.857 0.00 0.00 0.00 2.78
296 297 3.871006 GCTTTCCCCTTGTTTGTTTCTTG 59.129 43.478 0.00 0.00 0.00 3.02
297 298 4.382577 GCTTTCCCCTTGTTTGTTTCTTGA 60.383 41.667 0.00 0.00 0.00 3.02
298 299 5.684813 GCTTTCCCCTTGTTTGTTTCTTGAT 60.685 40.000 0.00 0.00 0.00 2.57
299 300 5.529581 TTCCCCTTGTTTGTTTCTTGATC 57.470 39.130 0.00 0.00 0.00 2.92
340 341 4.324402 CCATTAGAATTTGTTGCTTGCGTC 59.676 41.667 0.00 0.00 0.00 5.19
342 343 3.435105 AGAATTTGTTGCTTGCGTCAA 57.565 38.095 0.00 0.00 0.00 3.18
343 344 3.115554 AGAATTTGTTGCTTGCGTCAAC 58.884 40.909 8.13 8.13 42.91 3.18
365 366 3.060940 CGTTTCATCGTCCTGATCGATTG 60.061 47.826 0.00 0.00 43.98 2.67
370 371 3.537793 TCGTCCTGATCGATTGATACG 57.462 47.619 14.36 14.36 35.29 3.06
385 386 2.076863 GATACGCTGGCTGAACTTTGT 58.923 47.619 0.00 0.00 0.00 2.83
386 387 1.961793 TACGCTGGCTGAACTTTGTT 58.038 45.000 0.00 0.00 0.00 2.83
387 388 1.961793 ACGCTGGCTGAACTTTGTTA 58.038 45.000 0.00 0.00 0.00 2.41
434 435 7.211966 TGTTCTCTACTTTGTAGTACAGTCC 57.788 40.000 2.68 0.00 35.78 3.85
435 436 6.774170 TGTTCTCTACTTTGTAGTACAGTCCA 59.226 38.462 2.68 0.00 35.78 4.02
436 437 7.450634 TGTTCTCTACTTTGTAGTACAGTCCAT 59.549 37.037 2.68 0.00 35.78 3.41
437 438 8.954350 GTTCTCTACTTTGTAGTACAGTCCATA 58.046 37.037 2.68 0.00 35.78 2.74
467 468 3.119531 CCACCATTAATTGCTGCGAGAAA 60.120 43.478 0.00 0.00 0.00 2.52
484 485 2.028930 AGAAAGAGTTCCAGATCGCGTT 60.029 45.455 5.77 0.00 33.92 4.84
495 496 0.447801 GATCGCGTTGCCACTTTGAT 59.552 50.000 5.77 0.00 0.00 2.57
498 499 0.096976 CGCGTTGCCACTTTGATAGG 59.903 55.000 0.00 0.00 0.00 2.57
499 500 0.451783 GCGTTGCCACTTTGATAGGG 59.548 55.000 0.00 0.00 0.00 3.53
500 501 0.451783 CGTTGCCACTTTGATAGGGC 59.548 55.000 0.00 0.00 46.58 5.19
501 502 0.817654 GTTGCCACTTTGATAGGGCC 59.182 55.000 0.00 0.00 45.83 5.80
502 503 0.679640 TTGCCACTTTGATAGGGCCG 60.680 55.000 0.00 0.00 45.83 6.13
543 544 9.807921 TTTAGACTCCCACTTGATTTATTTTCT 57.192 29.630 0.00 0.00 0.00 2.52
544 545 7.693969 AGACTCCCACTTGATTTATTTTCTG 57.306 36.000 0.00 0.00 0.00 3.02
545 546 7.234355 AGACTCCCACTTGATTTATTTTCTGT 58.766 34.615 0.00 0.00 0.00 3.41
546 547 8.383175 AGACTCCCACTTGATTTATTTTCTGTA 58.617 33.333 0.00 0.00 0.00 2.74
582 583 1.142870 TGAACATACTGCTATGGGCCC 59.857 52.381 17.59 17.59 40.92 5.80
583 584 1.421646 GAACATACTGCTATGGGCCCT 59.578 52.381 25.70 11.37 40.92 5.19
584 585 2.415983 ACATACTGCTATGGGCCCTA 57.584 50.000 25.70 10.18 40.92 3.53
585 586 2.260822 ACATACTGCTATGGGCCCTAG 58.739 52.381 25.70 21.47 40.92 3.02
586 587 2.158158 ACATACTGCTATGGGCCCTAGA 60.158 50.000 25.70 2.00 40.92 2.43
587 588 3.110705 CATACTGCTATGGGCCCTAGAT 58.889 50.000 25.70 11.23 40.92 1.98
588 589 4.264850 ACATACTGCTATGGGCCCTAGATA 60.265 45.833 25.70 11.85 40.92 1.98
589 590 3.498614 ACTGCTATGGGCCCTAGATAT 57.501 47.619 25.70 10.37 40.92 1.63
598 599 3.041946 GGGCCCTAGATATTGGATCGAT 58.958 50.000 17.04 0.00 0.00 3.59
604 605 6.351881 GCCCTAGATATTGGATCGATGGTAAA 60.352 42.308 0.54 0.00 0.00 2.01
644 645 7.531857 TCCATTGATCCTCTATGACTAAGAC 57.468 40.000 0.00 0.00 32.59 3.01
804 850 7.704578 TTTACCCCATTTGATTTTCGATGTA 57.295 32.000 0.00 0.00 0.00 2.29
806 852 6.790232 ACCCCATTTGATTTTCGATGTAAT 57.210 33.333 0.00 0.00 0.00 1.89
847 928 5.851047 TTTCATGTCAGAGCGCATATATG 57.149 39.130 11.47 8.45 0.00 1.78
849 930 4.886579 TCATGTCAGAGCGCATATATGTT 58.113 39.130 11.47 0.90 0.00 2.71
850 931 6.024552 TCATGTCAGAGCGCATATATGTTA 57.975 37.500 11.47 0.00 0.00 2.41
851 932 6.633856 TCATGTCAGAGCGCATATATGTTAT 58.366 36.000 11.47 0.47 0.00 1.89
852 933 6.753744 TCATGTCAGAGCGCATATATGTTATC 59.246 38.462 11.47 9.21 0.00 1.75
853 934 5.095490 TGTCAGAGCGCATATATGTTATCG 58.905 41.667 11.47 9.80 0.00 2.92
854 935 4.027295 GTCAGAGCGCATATATGTTATCGC 60.027 45.833 20.85 20.85 42.46 4.58
859 940 5.059660 GCGCATATATGTTATCGCTTCTC 57.940 43.478 21.02 0.14 39.51 2.87
862 943 6.075310 GCGCATATATGTTATCGCTTCTCTAC 60.075 42.308 21.02 0.00 39.51 2.59
863 944 6.415280 CGCATATATGTTATCGCTTCTCTACC 59.585 42.308 14.14 0.00 0.00 3.18
865 946 7.433719 GCATATATGTTATCGCTTCTCTACCTG 59.566 40.741 14.14 0.00 0.00 4.00
867 948 5.599999 ATGTTATCGCTTCTCTACCTGTT 57.400 39.130 0.00 0.00 0.00 3.16
868 949 4.744570 TGTTATCGCTTCTCTACCTGTTG 58.255 43.478 0.00 0.00 0.00 3.33
869 950 2.301577 ATCGCTTCTCTACCTGTTGC 57.698 50.000 0.00 0.00 0.00 4.17
870 951 0.246635 TCGCTTCTCTACCTGTTGCC 59.753 55.000 0.00 0.00 0.00 4.52
871 952 0.247736 CGCTTCTCTACCTGTTGCCT 59.752 55.000 0.00 0.00 0.00 4.75
873 954 2.784347 GCTTCTCTACCTGTTGCCTTT 58.216 47.619 0.00 0.00 0.00 3.11
875 956 3.189495 GCTTCTCTACCTGTTGCCTTTTC 59.811 47.826 0.00 0.00 0.00 2.29
876 957 4.389374 CTTCTCTACCTGTTGCCTTTTCA 58.611 43.478 0.00 0.00 0.00 2.69
978 1067 0.947244 GTCTGCTGTGTTTGGGTCTG 59.053 55.000 0.00 0.00 0.00 3.51
1146 1235 3.711704 TCTCCTCCTATCCATCCAAACAC 59.288 47.826 0.00 0.00 0.00 3.32
1201 1299 2.119801 ACCTGATGTTCATGAGTGCC 57.880 50.000 0.00 0.00 0.00 5.01
1236 1340 1.131126 CCATTTAGCAACAGCCTCGTG 59.869 52.381 0.00 0.00 0.00 4.35
1241 1345 2.391389 GCAACAGCCTCGTGCCTAC 61.391 63.158 0.00 0.00 42.71 3.18
1304 1413 0.744414 ATGCGTTGTCAGATTCCCCG 60.744 55.000 0.00 0.00 0.00 5.73
1313 1422 1.280998 TCAGATTCCCCGGTTTTCTCC 59.719 52.381 0.00 0.00 0.00 3.71
1485 1595 3.363970 CGGTCGATGAAAACACTTTCCTG 60.364 47.826 0.00 0.00 40.31 3.86
1513 1623 2.363018 CCCTCACGGCTCCTCTGA 60.363 66.667 0.00 0.00 0.00 3.27
1632 1742 1.825474 ACGATCGAGAAGGTCATGGTT 59.175 47.619 24.34 0.00 0.00 3.67
1645 1755 4.714308 AGGTCATGGTTTTCAAAGGACAAA 59.286 37.500 0.00 0.00 31.15 2.83
1666 1776 8.253867 ACAAATATTTGGCATGGATAATGACT 57.746 30.769 27.43 2.70 45.59 3.41
1742 1854 1.272037 TGATCCTGGTGAAAGCATGCA 60.272 47.619 21.98 0.00 46.93 3.96
1767 1879 1.517538 AATGGCATCTTCCCCACCCA 61.518 55.000 0.00 0.00 33.17 4.51
1885 1997 1.810031 CGAGTGAACCTGCAAAGTGGA 60.810 52.381 0.00 0.00 0.00 4.02
1991 2103 1.281925 TGGGGAGGGAGGAGCAATTC 61.282 60.000 0.00 0.00 0.00 2.17
2087 2199 6.481644 GCCTCTACTCCAACAATCTTTATCTG 59.518 42.308 0.00 0.00 0.00 2.90
2090 2202 7.044181 TCTACTCCAACAATCTTTATCTGCAG 58.956 38.462 7.63 7.63 0.00 4.41
2099 2211 0.744414 TTTATCTGCAGAGGCCGTGC 60.744 55.000 22.96 22.45 41.59 5.34
2159 2293 3.785486 TCTATTCGTGACCTGCTTGATG 58.215 45.455 0.00 0.00 0.00 3.07
2160 2294 1.089920 ATTCGTGACCTGCTTGATGC 58.910 50.000 0.00 0.00 43.25 3.91
2174 2308 4.795268 GCTTGATGCATGGTCTATTCATG 58.205 43.478 2.46 0.00 43.39 3.07
2175 2309 4.517832 GCTTGATGCATGGTCTATTCATGA 59.482 41.667 2.46 0.00 43.25 3.07
2176 2310 5.562307 GCTTGATGCATGGTCTATTCATGAC 60.562 44.000 2.46 0.00 43.25 3.06
2177 2311 8.438213 GCTTGATGCATGGTCTATTCATGACC 62.438 46.154 2.46 6.01 46.02 4.02
2243 2377 8.383175 CCCCTATAAGATGCCTTGACTTTTATA 58.617 37.037 0.00 0.00 33.94 0.98
2307 2441 9.811995 GTTGTAGTATAACCATGTCAGATGTAA 57.188 33.333 0.00 0.00 0.00 2.41
2319 2453 7.666804 CCATGTCAGATGTAATTGGAATATGGA 59.333 37.037 0.00 0.00 33.02 3.41
2326 2460 6.918892 TGTAATTGGAATATGGAGTTGTCG 57.081 37.500 0.00 0.00 0.00 4.35
2374 2508 5.177881 TCAGCATGCATGAAAATGTTGTTTC 59.822 36.000 30.64 7.40 36.65 2.78
2375 2509 7.180369 TCAGCATGCATGAAAATGTTGTTTCA 61.180 34.615 30.64 3.08 42.99 2.69
2442 2576 3.502595 TCGAGTAGAGAACAGAACAGTGG 59.497 47.826 0.00 0.00 0.00 4.00
2468 2602 6.057533 TCATTTGCAGTTATGTAGGAGATGG 58.942 40.000 5.72 0.00 0.00 3.51
2504 2638 3.755378 AGCACTGAGGATTTTGCAGTTAG 59.245 43.478 0.00 0.00 40.63 2.34
2510 2644 6.150140 ACTGAGGATTTTGCAGTTAGTTCATC 59.850 38.462 0.00 0.00 39.69 2.92
2523 2657 3.636153 AGTTCATCCTTGAGGGCTTAC 57.364 47.619 0.00 0.00 35.41 2.34
2545 2679 5.541845 ACTCAAGCTTATGCGCATATAAGA 58.458 37.500 28.68 20.71 41.17 2.10
2546 2680 5.406780 ACTCAAGCTTATGCGCATATAAGAC 59.593 40.000 28.68 20.89 41.17 3.01
2547 2681 5.296748 TCAAGCTTATGCGCATATAAGACA 58.703 37.500 28.68 15.02 41.17 3.41
2548 2682 5.934043 TCAAGCTTATGCGCATATAAGACAT 59.066 36.000 28.68 15.04 41.17 3.06
2549 2683 5.791367 AGCTTATGCGCATATAAGACATG 57.209 39.130 28.68 14.08 41.17 3.21
2550 2684 5.240891 AGCTTATGCGCATATAAGACATGT 58.759 37.500 28.68 0.00 41.17 3.21
2551 2685 5.121298 AGCTTATGCGCATATAAGACATGTG 59.879 40.000 28.68 8.75 41.17 3.21
2552 2686 5.106948 GCTTATGCGCATATAAGACATGTGT 60.107 40.000 28.68 0.00 41.17 3.72
2553 2687 6.566564 GCTTATGCGCATATAAGACATGTGTT 60.567 38.462 28.68 13.33 41.17 3.32
2554 2688 5.756195 ATGCGCATATAAGACATGTGTTT 57.244 34.783 24.02 5.54 36.49 2.83
2555 2689 6.859420 ATGCGCATATAAGACATGTGTTTA 57.141 33.333 24.02 7.62 36.49 2.01
2556 2690 6.285790 TGCGCATATAAGACATGTGTTTAG 57.714 37.500 14.05 3.24 36.49 1.85
2557 2691 6.045955 TGCGCATATAAGACATGTGTTTAGA 58.954 36.000 14.05 5.16 36.49 2.10
2558 2692 6.019075 TGCGCATATAAGACATGTGTTTAGAC 60.019 38.462 14.05 0.19 36.49 2.59
2559 2693 6.564125 GCGCATATAAGACATGTGTTTAGACC 60.564 42.308 14.05 0.22 36.49 3.85
2560 2694 6.701841 CGCATATAAGACATGTGTTTAGACCT 59.298 38.462 14.05 0.00 0.00 3.85
2561 2695 7.224753 CGCATATAAGACATGTGTTTAGACCTT 59.775 37.037 14.05 5.54 0.00 3.50
2562 2696 9.542462 GCATATAAGACATGTGTTTAGACCTTA 57.458 33.333 14.05 7.59 0.00 2.69
2584 2718 9.884465 CCTTATAAAAGATGTGTTTATGCTAGC 57.116 33.333 8.10 8.10 34.02 3.42
2597 2731 3.710209 ATGCTAGCATAAGGGCTTAGG 57.290 47.619 28.62 0.00 42.71 2.69
2612 2746 3.072622 GGCTTAGGGGATTTCTAACCGAT 59.927 47.826 0.00 0.00 0.00 4.18
2615 2749 3.061909 AGGGGATTTCTAACCGATCCT 57.938 47.619 0.00 0.00 39.42 3.24
2624 2758 5.943349 TTCTAACCGATCCTCAATAACCA 57.057 39.130 0.00 0.00 0.00 3.67
2626 2760 4.960469 TCTAACCGATCCTCAATAACCAGT 59.040 41.667 0.00 0.00 0.00 4.00
2641 2775 9.498176 TCAATAACCAGTTAGAGGAGTAAAAAC 57.502 33.333 0.00 0.00 0.00 2.43
2665 2799 3.667360 GGTTTTACTTCTCTAACCGGCA 58.333 45.455 0.00 0.00 31.64 5.69
2684 2818 0.399949 ACCTAGCCGATCCCCAATCA 60.400 55.000 0.00 0.00 33.65 2.57
2685 2819 0.764890 CCTAGCCGATCCCCAATCAA 59.235 55.000 0.00 0.00 33.65 2.57
2686 2820 1.543429 CCTAGCCGATCCCCAATCAAC 60.543 57.143 0.00 0.00 33.65 3.18
2688 2822 2.834618 GCCGATCCCCAATCAACGC 61.835 63.158 0.00 0.00 33.65 4.84
2691 2825 1.502231 CGATCCCCAATCAACGCTAG 58.498 55.000 0.00 0.00 33.65 3.42
2695 2829 0.251916 CCCCAATCAACGCTAGTGGA 59.748 55.000 8.42 0.00 33.96 4.02
2697 2831 1.656652 CCAATCAACGCTAGTGGAGG 58.343 55.000 8.42 0.00 33.96 4.30
2698 2832 1.207089 CCAATCAACGCTAGTGGAGGA 59.793 52.381 8.42 2.40 33.96 3.71
2699 2833 2.158900 CCAATCAACGCTAGTGGAGGAT 60.159 50.000 8.42 4.69 33.96 3.24
2700 2834 3.069586 CCAATCAACGCTAGTGGAGGATA 59.930 47.826 8.42 0.00 33.96 2.59
2701 2835 4.442893 CCAATCAACGCTAGTGGAGGATAA 60.443 45.833 8.42 0.00 33.96 1.75
2702 2836 5.116180 CAATCAACGCTAGTGGAGGATAAA 58.884 41.667 8.42 0.00 33.05 1.40
2703 2837 5.552870 ATCAACGCTAGTGGAGGATAAAT 57.447 39.130 8.42 0.00 33.05 1.40
2704 2838 5.353394 TCAACGCTAGTGGAGGATAAATT 57.647 39.130 8.42 0.00 0.00 1.82
2733 2867 3.377656 CGCCACGCCTCCCTATAT 58.622 61.111 0.00 0.00 0.00 0.86
2742 2876 4.223032 CACGCCTCCCTATATTTACTCCAT 59.777 45.833 0.00 0.00 0.00 3.41
2743 2877 4.844655 ACGCCTCCCTATATTTACTCCATT 59.155 41.667 0.00 0.00 0.00 3.16
2744 2878 6.021030 ACGCCTCCCTATATTTACTCCATTA 58.979 40.000 0.00 0.00 0.00 1.90
2745 2879 6.672657 ACGCCTCCCTATATTTACTCCATTAT 59.327 38.462 0.00 0.00 0.00 1.28
2746 2880 7.842743 ACGCCTCCCTATATTTACTCCATTATA 59.157 37.037 0.00 0.00 0.00 0.98
2753 2887 8.755977 CCTATATTTACTCCATTATACGGTGGT 58.244 37.037 0.00 0.00 36.84 4.16
2755 2889 4.572985 TTACTCCATTATACGGTGGTCG 57.427 45.455 0.00 0.00 45.88 4.79
2795 2929 0.395173 GTCTCCTCTTCCTCTCCGCT 60.395 60.000 0.00 0.00 0.00 5.52
2811 2945 0.390472 CGCTTCCTCCGCTTCTTCTT 60.390 55.000 0.00 0.00 0.00 2.52
2817 2951 1.190643 CTCCGCTTCTTCTTCTCCCT 58.809 55.000 0.00 0.00 0.00 4.20
2820 2954 4.145807 CTCCGCTTCTTCTTCTCCCTATA 58.854 47.826 0.00 0.00 0.00 1.31
2821 2955 4.742012 TCCGCTTCTTCTTCTCCCTATAT 58.258 43.478 0.00 0.00 0.00 0.86
2822 2956 5.148502 TCCGCTTCTTCTTCTCCCTATATT 58.851 41.667 0.00 0.00 0.00 1.28
2823 2957 5.602978 TCCGCTTCTTCTTCTCCCTATATTT 59.397 40.000 0.00 0.00 0.00 1.40
2824 2958 6.781014 TCCGCTTCTTCTTCTCCCTATATTTA 59.219 38.462 0.00 0.00 0.00 1.40
2826 2960 7.256012 CCGCTTCTTCTTCTCCCTATATTTACT 60.256 40.741 0.00 0.00 0.00 2.24
2827 2961 7.810759 CGCTTCTTCTTCTCCCTATATTTACTC 59.189 40.741 0.00 0.00 0.00 2.59
2829 2963 9.148879 CTTCTTCTTCTCCCTATATTTACTCCA 57.851 37.037 0.00 0.00 0.00 3.86
2830 2964 9.676129 TTCTTCTTCTCCCTATATTTACTCCAT 57.324 33.333 0.00 0.00 0.00 3.41
2831 2965 9.315363 TCTTCTTCTCCCTATATTTACTCCATC 57.685 37.037 0.00 0.00 0.00 3.51
2832 2966 9.094578 CTTCTTCTCCCTATATTTACTCCATCA 57.905 37.037 0.00 0.00 0.00 3.07
2833 2967 9.621239 TTCTTCTCCCTATATTTACTCCATCAT 57.379 33.333 0.00 0.00 0.00 2.45
2836 2970 8.521170 TCTCCCTATATTTACTCCATCATACG 57.479 38.462 0.00 0.00 0.00 3.06
2837 2971 7.560262 TCTCCCTATATTTACTCCATCATACGG 59.440 40.741 0.00 0.00 0.00 4.02
2838 2972 7.186972 TCCCTATATTTACTCCATCATACGGT 58.813 38.462 0.00 0.00 0.00 4.83
2839 2973 7.123697 TCCCTATATTTACTCCATCATACGGTG 59.876 40.741 0.00 0.00 0.00 4.94
2840 2974 7.265673 CCTATATTTACTCCATCATACGGTGG 58.734 42.308 0.00 0.00 36.82 4.61
2843 2977 1.860641 ACTCCATCATACGGTGGTCA 58.139 50.000 0.00 0.00 36.84 4.02
2844 2978 2.184533 ACTCCATCATACGGTGGTCAA 58.815 47.619 0.00 0.00 36.84 3.18
2846 2980 2.168521 CTCCATCATACGGTGGTCAAGT 59.831 50.000 0.00 0.00 36.84 3.16
2847 2981 3.367321 TCCATCATACGGTGGTCAAGTA 58.633 45.455 0.00 0.00 36.84 2.24
2848 2982 3.770388 TCCATCATACGGTGGTCAAGTAA 59.230 43.478 0.00 0.00 36.84 2.24
2849 2983 4.223255 TCCATCATACGGTGGTCAAGTAAA 59.777 41.667 0.00 0.00 36.84 2.01
2850 2984 4.938832 CCATCATACGGTGGTCAAGTAAAA 59.061 41.667 0.00 0.00 0.00 1.52
2851 2985 5.413213 CCATCATACGGTGGTCAAGTAAAAA 59.587 40.000 0.00 0.00 0.00 1.94
2873 3007 6.442513 AAATGTCCTTACTCAAGCTTATGC 57.557 37.500 0.00 0.00 40.05 3.14
2874 3008 3.521560 TGTCCTTACTCAAGCTTATGCG 58.478 45.455 0.00 0.00 45.42 4.73
2875 3009 2.285488 GTCCTTACTCAAGCTTATGCGC 59.715 50.000 0.00 0.00 45.42 6.09
2876 3010 2.168521 TCCTTACTCAAGCTTATGCGCT 59.831 45.455 9.73 0.00 45.42 5.92
2884 3018 1.373570 AGCTTATGCGCTTTCTCACC 58.626 50.000 9.73 0.00 45.42 4.02
2885 3019 1.065854 AGCTTATGCGCTTTCTCACCT 60.066 47.619 9.73 0.00 45.42 4.00
2887 3021 2.898705 CTTATGCGCTTTCTCACCTCT 58.101 47.619 9.73 0.00 0.00 3.69
2888 3022 2.586258 TATGCGCTTTCTCACCTCTC 57.414 50.000 9.73 0.00 0.00 3.20
2890 3024 0.037882 TGCGCTTTCTCACCTCTCAG 60.038 55.000 9.73 0.00 0.00 3.35
2891 3025 0.037790 GCGCTTTCTCACCTCTCAGT 60.038 55.000 0.00 0.00 0.00 3.41
2892 3026 1.606737 GCGCTTTCTCACCTCTCAGTT 60.607 52.381 0.00 0.00 0.00 3.16
2893 3027 2.352814 GCGCTTTCTCACCTCTCAGTTA 60.353 50.000 0.00 0.00 0.00 2.24
2894 3028 3.506810 CGCTTTCTCACCTCTCAGTTAG 58.493 50.000 0.00 0.00 0.00 2.34
2895 3029 3.258228 GCTTTCTCACCTCTCAGTTAGC 58.742 50.000 0.00 0.00 0.00 3.09
2897 3031 2.909504 TCTCACCTCTCAGTTAGCCT 57.090 50.000 0.00 0.00 0.00 4.58
2898 3032 3.176924 TCTCACCTCTCAGTTAGCCTT 57.823 47.619 0.00 0.00 0.00 4.35
2899 3033 2.828520 TCTCACCTCTCAGTTAGCCTTG 59.171 50.000 0.00 0.00 0.00 3.61
2900 3034 1.276421 TCACCTCTCAGTTAGCCTTGC 59.724 52.381 0.00 0.00 0.00 4.01
2901 3035 1.277557 CACCTCTCAGTTAGCCTTGCT 59.722 52.381 0.00 0.00 43.41 3.91
2902 3036 1.277557 ACCTCTCAGTTAGCCTTGCTG 59.722 52.381 0.00 0.00 40.10 4.41
2903 3037 1.277557 CCTCTCAGTTAGCCTTGCTGT 59.722 52.381 0.00 0.00 40.10 4.40
2904 3038 2.289945 CCTCTCAGTTAGCCTTGCTGTT 60.290 50.000 0.00 0.00 40.10 3.16
2908 3042 2.104792 TCAGTTAGCCTTGCTGTTCACT 59.895 45.455 0.00 0.00 40.10 3.41
2913 3047 1.974236 AGCCTTGCTGTTCACTACTCT 59.026 47.619 0.00 0.00 37.57 3.24
2914 3048 3.165875 AGCCTTGCTGTTCACTACTCTA 58.834 45.455 0.00 0.00 37.57 2.43
2915 3049 3.772025 AGCCTTGCTGTTCACTACTCTAT 59.228 43.478 0.00 0.00 37.57 1.98
2916 3050 4.223923 AGCCTTGCTGTTCACTACTCTATT 59.776 41.667 0.00 0.00 37.57 1.73
2917 3051 4.938226 GCCTTGCTGTTCACTACTCTATTT 59.062 41.667 0.00 0.00 0.00 1.40
2918 3052 5.412904 GCCTTGCTGTTCACTACTCTATTTT 59.587 40.000 0.00 0.00 0.00 1.82
2940 3074 4.617875 GCGGGTGCACTACTCATT 57.382 55.556 17.98 0.00 42.15 2.57
2941 3075 2.384203 GCGGGTGCACTACTCATTC 58.616 57.895 17.98 0.00 42.15 2.67
2942 3076 0.108138 GCGGGTGCACTACTCATTCT 60.108 55.000 17.98 0.00 42.15 2.40
2943 3077 1.676014 GCGGGTGCACTACTCATTCTT 60.676 52.381 17.98 0.00 42.15 2.52
2944 3078 2.699954 CGGGTGCACTACTCATTCTTT 58.300 47.619 17.98 0.00 0.00 2.52
2945 3079 3.074412 CGGGTGCACTACTCATTCTTTT 58.926 45.455 17.98 0.00 0.00 2.27
2946 3080 3.120199 CGGGTGCACTACTCATTCTTTTG 60.120 47.826 17.98 0.00 0.00 2.44
2948 3082 3.503748 GGTGCACTACTCATTCTTTTGCT 59.496 43.478 17.98 0.00 0.00 3.91
2949 3083 4.470462 GTGCACTACTCATTCTTTTGCTG 58.530 43.478 10.32 0.00 0.00 4.41
2950 3084 4.023707 GTGCACTACTCATTCTTTTGCTGT 60.024 41.667 10.32 0.00 0.00 4.40
2951 3085 5.179368 GTGCACTACTCATTCTTTTGCTGTA 59.821 40.000 10.32 0.00 0.00 2.74
2952 3086 5.762711 TGCACTACTCATTCTTTTGCTGTAA 59.237 36.000 0.00 0.00 0.00 2.41
2953 3087 6.080406 GCACTACTCATTCTTTTGCTGTAAC 58.920 40.000 0.00 0.00 0.00 2.50
2961 3137 0.466555 TTTTGCTGTAACGGGCAGGT 60.467 50.000 5.54 0.00 39.68 4.00
2996 3172 2.362889 GGCATGTTGGGAGTGGGG 60.363 66.667 0.00 0.00 0.00 4.96
2998 3174 2.765969 CATGTTGGGAGTGGGGCT 59.234 61.111 0.00 0.00 0.00 5.19
3015 3191 1.070643 GGCTTTGTGAATTTTGTGCGC 60.071 47.619 0.00 0.00 0.00 6.09
3062 3238 0.383860 GGTTTCGTTTCAGGTTCGCG 60.384 55.000 0.00 0.00 0.00 5.87
3066 3242 1.200839 CGTTTCAGGTTCGCGTGTC 59.799 57.895 5.77 0.00 34.82 3.67
3072 3248 0.042188 CAGGTTCGCGTGTCAAACTG 60.042 55.000 5.77 7.53 0.00 3.16
3073 3249 0.179094 AGGTTCGCGTGTCAAACTGA 60.179 50.000 5.77 0.00 0.00 3.41
3074 3250 0.865769 GGTTCGCGTGTCAAACTGAT 59.134 50.000 5.77 0.00 0.00 2.90
3075 3251 1.398451 GGTTCGCGTGTCAAACTGATG 60.398 52.381 5.77 0.00 0.00 3.07
3076 3252 1.525197 GTTCGCGTGTCAAACTGATGA 59.475 47.619 5.77 0.00 0.00 2.92
3084 3260 2.489971 GTCAAACTGATGACGGAACCA 58.510 47.619 3.42 0.00 40.23 3.67
3085 3261 3.074412 GTCAAACTGATGACGGAACCAT 58.926 45.455 3.42 0.00 40.23 3.55
3086 3262 3.073678 TCAAACTGATGACGGAACCATG 58.926 45.455 0.00 0.00 0.00 3.66
3087 3263 1.453155 AACTGATGACGGAACCATGC 58.547 50.000 0.00 0.00 0.00 4.06
3088 3264 0.324614 ACTGATGACGGAACCATGCA 59.675 50.000 0.00 0.00 0.00 3.96
3089 3265 1.065199 ACTGATGACGGAACCATGCAT 60.065 47.619 0.00 0.00 0.00 3.96
3090 3266 2.170397 ACTGATGACGGAACCATGCATA 59.830 45.455 0.00 0.00 0.00 3.14
3091 3267 3.181451 ACTGATGACGGAACCATGCATAT 60.181 43.478 0.00 0.00 0.00 1.78
3092 3268 3.402110 TGATGACGGAACCATGCATATC 58.598 45.455 0.00 0.00 0.00 1.63
3093 3269 1.864565 TGACGGAACCATGCATATCG 58.135 50.000 0.00 1.90 0.00 2.92
3094 3270 1.138069 TGACGGAACCATGCATATCGT 59.862 47.619 0.00 5.30 0.00 3.73
3095 3271 1.526887 GACGGAACCATGCATATCGTG 59.473 52.381 0.00 0.00 0.00 4.35
3096 3272 1.134521 ACGGAACCATGCATATCGTGT 60.135 47.619 0.00 0.00 0.00 4.49
3097 3273 1.939934 CGGAACCATGCATATCGTGTT 59.060 47.619 0.00 0.00 0.00 3.32
3098 3274 2.354510 CGGAACCATGCATATCGTGTTT 59.645 45.455 0.00 0.00 0.00 2.83
3099 3275 3.181501 CGGAACCATGCATATCGTGTTTT 60.182 43.478 0.00 0.00 0.00 2.43
3100 3276 4.034626 CGGAACCATGCATATCGTGTTTTA 59.965 41.667 0.00 0.00 0.00 1.52
3101 3277 5.277779 CGGAACCATGCATATCGTGTTTTAT 60.278 40.000 0.00 0.00 0.00 1.40
3102 3278 5.914635 GGAACCATGCATATCGTGTTTTATG 59.085 40.000 0.00 0.00 0.00 1.90
3103 3279 4.858935 ACCATGCATATCGTGTTTTATGC 58.141 39.130 0.00 7.73 46.96 3.14
3138 3314 9.722056 AACTTGAATAATATCATGCGAAAAGTC 57.278 29.630 0.00 0.00 0.00 3.01
3139 3315 9.113838 ACTTGAATAATATCATGCGAAAAGTCT 57.886 29.630 0.00 0.00 0.00 3.24
3140 3316 9.378597 CTTGAATAATATCATGCGAAAAGTCTG 57.621 33.333 0.00 0.00 0.00 3.51
3141 3317 7.355017 TGAATAATATCATGCGAAAAGTCTGC 58.645 34.615 0.00 0.00 0.00 4.26
3142 3318 4.558538 AATATCATGCGAAAAGTCTGCC 57.441 40.909 0.00 0.00 0.00 4.85
3143 3319 1.098050 ATCATGCGAAAAGTCTGCCC 58.902 50.000 0.00 0.00 0.00 5.36
3144 3320 0.960364 TCATGCGAAAAGTCTGCCCC 60.960 55.000 0.00 0.00 0.00 5.80
3145 3321 1.074775 ATGCGAAAAGTCTGCCCCA 59.925 52.632 0.00 0.00 0.00 4.96
3146 3322 0.962356 ATGCGAAAAGTCTGCCCCAG 60.962 55.000 0.00 0.00 0.00 4.45
3147 3323 2.982744 GCGAAAAGTCTGCCCCAGC 61.983 63.158 0.00 0.00 40.48 4.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 9.911138 AAATTGCATTTTTCACTTTCACTTTTT 57.089 22.222 0.75 0.00 0.00 1.94
3 4 9.558648 GAAATTGCATTTTTCACTTTCACTTTT 57.441 25.926 14.50 0.00 34.94 2.27
4 5 8.949177 AGAAATTGCATTTTTCACTTTCACTTT 58.051 25.926 19.16 0.00 36.31 2.66
5 6 8.496707 AGAAATTGCATTTTTCACTTTCACTT 57.503 26.923 19.16 0.00 36.31 3.16
6 7 9.598517 TTAGAAATTGCATTTTTCACTTTCACT 57.401 25.926 19.16 7.83 36.31 3.41
46 47 6.036577 TCTTGGACTTTGCTTTCTGTTTTT 57.963 33.333 0.00 0.00 0.00 1.94
47 48 5.659440 TCTTGGACTTTGCTTTCTGTTTT 57.341 34.783 0.00 0.00 0.00 2.43
48 49 5.659440 TTCTTGGACTTTGCTTTCTGTTT 57.341 34.783 0.00 0.00 0.00 2.83
49 50 5.859205 ATTCTTGGACTTTGCTTTCTGTT 57.141 34.783 0.00 0.00 0.00 3.16
50 51 7.530426 AATATTCTTGGACTTTGCTTTCTGT 57.470 32.000 0.00 0.00 0.00 3.41
51 52 8.734386 ACTAATATTCTTGGACTTTGCTTTCTG 58.266 33.333 0.00 0.00 0.00 3.02
52 53 8.870075 ACTAATATTCTTGGACTTTGCTTTCT 57.130 30.769 0.00 0.00 0.00 2.52
65 66 7.201644 CGGGCCAAGCATATACTAATATTCTTG 60.202 40.741 4.39 9.44 43.37 3.02
66 67 6.823689 CGGGCCAAGCATATACTAATATTCTT 59.176 38.462 4.39 0.00 33.47 2.52
67 68 6.349300 CGGGCCAAGCATATACTAATATTCT 58.651 40.000 4.39 0.00 0.00 2.40
68 69 5.007724 GCGGGCCAAGCATATACTAATATTC 59.992 44.000 16.36 0.00 34.19 1.75
69 70 4.881850 GCGGGCCAAGCATATACTAATATT 59.118 41.667 16.36 0.00 34.19 1.28
70 71 4.164221 AGCGGGCCAAGCATATACTAATAT 59.836 41.667 22.00 0.00 37.01 1.28
71 72 3.517901 AGCGGGCCAAGCATATACTAATA 59.482 43.478 22.00 0.00 37.01 0.98
72 73 2.305927 AGCGGGCCAAGCATATACTAAT 59.694 45.455 22.00 0.00 37.01 1.73
73 74 1.697432 AGCGGGCCAAGCATATACTAA 59.303 47.619 22.00 0.00 37.01 2.24
74 75 1.348064 AGCGGGCCAAGCATATACTA 58.652 50.000 22.00 0.00 37.01 1.82
75 76 0.474184 AAGCGGGCCAAGCATATACT 59.526 50.000 22.00 0.08 37.01 2.12
76 77 0.593128 CAAGCGGGCCAAGCATATAC 59.407 55.000 22.00 0.00 37.01 1.47
77 78 0.182537 ACAAGCGGGCCAAGCATATA 59.817 50.000 22.00 0.00 37.01 0.86
78 79 0.182537 TACAAGCGGGCCAAGCATAT 59.817 50.000 22.00 4.60 37.01 1.78
79 80 0.182537 ATACAAGCGGGCCAAGCATA 59.817 50.000 22.00 12.53 37.01 3.14
80 81 1.076777 ATACAAGCGGGCCAAGCAT 60.077 52.632 22.00 9.55 37.01 3.79
81 82 2.045708 CATACAAGCGGGCCAAGCA 61.046 57.895 22.00 4.21 37.01 3.91
82 83 2.800736 CATACAAGCGGGCCAAGC 59.199 61.111 13.84 13.84 0.00 4.01
83 84 2.774799 GGCATACAAGCGGGCCAAG 61.775 63.158 4.39 0.00 45.70 3.61
84 85 2.753849 GGCATACAAGCGGGCCAA 60.754 61.111 4.39 0.00 45.70 4.52
86 87 4.849310 TCGGCATACAAGCGGGCC 62.849 66.667 0.00 0.00 42.98 5.80
87 88 3.272334 CTCGGCATACAAGCGGGC 61.272 66.667 0.00 0.00 35.76 6.13
88 89 2.588877 CCTCGGCATACAAGCGGG 60.589 66.667 0.00 0.00 35.76 6.13
89 90 3.272334 GCCTCGGCATACAAGCGG 61.272 66.667 2.41 0.00 41.49 5.52
90 91 1.766143 GAAGCCTCGGCATACAAGCG 61.766 60.000 11.02 0.00 44.88 4.68
91 92 0.744414 TGAAGCCTCGGCATACAAGC 60.744 55.000 11.02 0.00 44.88 4.01
92 93 1.293924 CTGAAGCCTCGGCATACAAG 58.706 55.000 11.02 0.00 44.88 3.16
93 94 3.458872 CTGAAGCCTCGGCATACAA 57.541 52.632 11.02 0.00 44.88 2.41
105 106 1.973812 GGTTGGACTGGGCTGAAGC 60.974 63.158 0.00 0.00 41.14 3.86
106 107 0.178992 TTGGTTGGACTGGGCTGAAG 60.179 55.000 0.00 0.00 0.00 3.02
107 108 0.467290 GTTGGTTGGACTGGGCTGAA 60.467 55.000 0.00 0.00 0.00 3.02
108 109 1.150536 GTTGGTTGGACTGGGCTGA 59.849 57.895 0.00 0.00 0.00 4.26
109 110 1.152777 TGTTGGTTGGACTGGGCTG 60.153 57.895 0.00 0.00 0.00 4.85
110 111 1.151450 CTGTTGGTTGGACTGGGCT 59.849 57.895 0.00 0.00 0.00 5.19
111 112 2.564721 GCTGTTGGTTGGACTGGGC 61.565 63.158 0.00 0.00 0.00 5.36
112 113 2.260869 CGCTGTTGGTTGGACTGGG 61.261 63.158 0.00 0.00 0.00 4.45
113 114 2.908073 GCGCTGTTGGTTGGACTGG 61.908 63.158 0.00 0.00 0.00 4.00
114 115 2.639286 GCGCTGTTGGTTGGACTG 59.361 61.111 0.00 0.00 0.00 3.51
115 116 2.594592 GGCGCTGTTGGTTGGACT 60.595 61.111 7.64 0.00 0.00 3.85
116 117 2.485795 TTGGCGCTGTTGGTTGGAC 61.486 57.895 7.64 0.00 0.00 4.02
117 118 2.124109 TTGGCGCTGTTGGTTGGA 60.124 55.556 7.64 0.00 0.00 3.53
118 119 2.027460 GTTGGCGCTGTTGGTTGG 59.973 61.111 7.64 0.00 0.00 3.77
119 120 2.027460 GGTTGGCGCTGTTGGTTG 59.973 61.111 7.64 0.00 0.00 3.77
120 121 3.223589 GGGTTGGCGCTGTTGGTT 61.224 61.111 7.64 0.00 0.00 3.67
136 137 4.653888 GAACGGGTGTGGTGGGGG 62.654 72.222 0.00 0.00 0.00 5.40
137 138 4.653888 GGAACGGGTGTGGTGGGG 62.654 72.222 0.00 0.00 0.00 4.96
163 164 1.070786 AGCTTGAAAACGAGGCGGA 59.929 52.632 0.00 0.00 0.00 5.54
165 166 1.441016 GCAGCTTGAAAACGAGGCG 60.441 57.895 0.00 0.00 0.00 5.52
187 188 3.257561 CGCATGCGTCCTTCTCCG 61.258 66.667 31.33 0.00 34.35 4.63
253 254 2.706339 AGCATGCCTTGTAGAGAAGG 57.294 50.000 15.66 1.06 44.86 3.46
289 290 5.728637 AAATCAAGTGGGGATCAAGAAAC 57.271 39.130 0.00 0.00 0.00 2.78
323 324 3.487985 GTTGACGCAAGCAACAAATTC 57.512 42.857 0.00 0.00 46.38 2.17
329 330 0.837605 GAAACGTTGACGCAAGCAAC 59.162 50.000 0.00 0.00 44.89 4.17
340 341 2.028045 CGATCAGGACGATGAAACGTTG 59.972 50.000 0.00 0.00 46.52 4.10
342 343 2.099263 ATCGATCAGGACGATGAAACGT 59.901 45.455 0.00 0.00 46.35 3.99
343 344 2.188837 TCGATCAGGACGATGAAACG 57.811 50.000 0.00 2.02 33.17 3.60
365 366 2.076863 ACAAAGTTCAGCCAGCGTATC 58.923 47.619 0.00 0.00 0.00 2.24
370 371 7.985476 TCTAATAATAACAAAGTTCAGCCAGC 58.015 34.615 0.00 0.00 0.00 4.85
385 386 6.565234 GCTGCGGCTCTATCTCTAATAATAA 58.435 40.000 11.21 0.00 35.22 1.40
386 387 6.137794 GCTGCGGCTCTATCTCTAATAATA 57.862 41.667 11.21 0.00 35.22 0.98
387 388 5.004922 GCTGCGGCTCTATCTCTAATAAT 57.995 43.478 11.21 0.00 35.22 1.28
417 418 6.881065 AGACGTATGGACTGTACTACAAAGTA 59.119 38.462 0.00 0.00 37.15 2.24
434 435 5.273170 CAATTAATGGTGGCAAGACGTATG 58.727 41.667 0.00 0.00 0.00 2.39
435 436 4.202010 GCAATTAATGGTGGCAAGACGTAT 60.202 41.667 0.00 0.00 0.00 3.06
436 437 3.127895 GCAATTAATGGTGGCAAGACGTA 59.872 43.478 0.00 0.00 0.00 3.57
437 438 2.094752 GCAATTAATGGTGGCAAGACGT 60.095 45.455 0.00 0.00 0.00 4.34
467 468 0.737715 GCAACGCGATCTGGAACTCT 60.738 55.000 15.93 0.00 0.00 3.24
484 485 1.077787 CGGCCCTATCAAAGTGGCA 60.078 57.895 0.00 0.00 41.09 4.92
495 496 0.781920 TCTAATCTAGCCCGGCCCTA 59.218 55.000 5.55 0.00 0.00 3.53
498 499 4.489306 AAATATCTAATCTAGCCCGGCC 57.511 45.455 5.55 0.00 0.00 6.13
499 500 6.097129 AGTCTAAATATCTAATCTAGCCCGGC 59.903 42.308 0.00 0.00 0.00 6.13
500 501 7.201839 GGAGTCTAAATATCTAATCTAGCCCGG 60.202 44.444 0.00 0.00 0.00 5.73
501 502 7.201839 GGGAGTCTAAATATCTAATCTAGCCCG 60.202 44.444 0.00 0.00 0.00 6.13
502 503 7.620094 TGGGAGTCTAAATATCTAATCTAGCCC 59.380 40.741 0.00 0.00 0.00 5.19
582 583 9.102757 CCAATTTACCATCGATCCAATATCTAG 57.897 37.037 0.00 0.00 0.00 2.43
583 584 8.046708 CCCAATTTACCATCGATCCAATATCTA 58.953 37.037 0.00 0.00 0.00 1.98
584 585 6.886459 CCCAATTTACCATCGATCCAATATCT 59.114 38.462 0.00 0.00 0.00 1.98
585 586 6.884295 TCCCAATTTACCATCGATCCAATATC 59.116 38.462 0.00 0.00 0.00 1.63
586 587 6.789268 TCCCAATTTACCATCGATCCAATAT 58.211 36.000 0.00 0.00 0.00 1.28
587 588 6.194285 TCCCAATTTACCATCGATCCAATA 57.806 37.500 0.00 0.00 0.00 1.90
588 589 5.060427 TCCCAATTTACCATCGATCCAAT 57.940 39.130 0.00 0.00 0.00 3.16
589 590 4.511786 TCCCAATTTACCATCGATCCAA 57.488 40.909 0.00 0.00 0.00 3.53
598 599 4.616671 TCCCATGATTCCCAATTTACCA 57.383 40.909 0.00 0.00 0.00 3.25
604 605 4.140639 TCAATGGATCCCATGATTCCCAAT 60.141 41.667 9.90 0.00 44.40 3.16
630 631 9.653287 CTGATAGAGGTAGTCTTAGTCATAGAG 57.347 40.741 0.00 0.00 36.64 2.43
631 632 9.382307 TCTGATAGAGGTAGTCTTAGTCATAGA 57.618 37.037 0.00 0.00 36.64 1.98
804 850 6.930164 TGAAAAACAATATGCTGCTGACAATT 59.070 30.769 0.00 0.00 0.00 2.32
806 852 5.840715 TGAAAAACAATATGCTGCTGACAA 58.159 33.333 0.00 0.00 0.00 3.18
847 928 3.552294 GCAACAGGTAGAGAAGCGATAAC 59.448 47.826 0.00 0.00 0.00 1.89
849 930 2.100916 GGCAACAGGTAGAGAAGCGATA 59.899 50.000 0.00 0.00 0.00 2.92
850 931 1.134670 GGCAACAGGTAGAGAAGCGAT 60.135 52.381 0.00 0.00 0.00 4.58
851 932 0.246635 GGCAACAGGTAGAGAAGCGA 59.753 55.000 0.00 0.00 0.00 4.93
852 933 0.247736 AGGCAACAGGTAGAGAAGCG 59.752 55.000 0.00 0.00 41.41 4.68
853 934 2.481289 AAGGCAACAGGTAGAGAAGC 57.519 50.000 0.00 0.00 41.41 3.86
854 935 4.389374 TGAAAAGGCAACAGGTAGAGAAG 58.611 43.478 0.00 0.00 41.41 2.85
855 936 4.431416 TGAAAAGGCAACAGGTAGAGAA 57.569 40.909 0.00 0.00 41.41 2.87
857 938 5.010012 ACATTTGAAAAGGCAACAGGTAGAG 59.990 40.000 0.00 0.00 41.41 2.43
859 940 5.200368 ACATTTGAAAAGGCAACAGGTAG 57.800 39.130 0.00 0.00 41.41 3.18
862 943 4.270808 GTGAACATTTGAAAAGGCAACAGG 59.729 41.667 0.00 0.00 41.41 4.00
863 944 4.026640 CGTGAACATTTGAAAAGGCAACAG 60.027 41.667 0.00 0.00 41.41 3.16
865 946 3.862845 ACGTGAACATTTGAAAAGGCAAC 59.137 39.130 0.00 0.00 0.00 4.17
867 948 3.129462 TGACGTGAACATTTGAAAAGGCA 59.871 39.130 0.00 0.00 0.00 4.75
868 949 3.701241 TGACGTGAACATTTGAAAAGGC 58.299 40.909 0.00 0.00 0.00 4.35
869 950 6.208644 AGAATGACGTGAACATTTGAAAAGG 58.791 36.000 0.00 0.00 37.96 3.11
870 951 7.645340 AGAAGAATGACGTGAACATTTGAAAAG 59.355 33.333 0.00 0.00 37.96 2.27
871 952 7.479980 AGAAGAATGACGTGAACATTTGAAAA 58.520 30.769 0.00 0.00 37.96 2.29
873 954 6.618287 AGAAGAATGACGTGAACATTTGAA 57.382 33.333 0.00 0.00 37.96 2.69
875 956 8.017373 ACATTAGAAGAATGACGTGAACATTTG 58.983 33.333 0.00 0.00 37.96 2.32
876 957 8.099364 ACATTAGAAGAATGACGTGAACATTT 57.901 30.769 0.00 0.00 37.96 2.32
978 1067 1.679305 TGAGAGCCTCAGACGGGAC 60.679 63.158 0.00 0.00 35.39 4.46
987 1076 1.068434 GTGGACATAGCTGAGAGCCTC 59.932 57.143 0.00 0.00 43.77 4.70
1236 1340 2.026641 ACATGGCATGAATGTGTAGGC 58.973 47.619 32.74 0.00 36.89 3.93
1241 1345 2.750712 TCAGTGACATGGCATGAATGTG 59.249 45.455 32.74 21.89 38.37 3.21
1304 1413 3.004839 GCTCTCACCAAAAGGAGAAAACC 59.995 47.826 0.00 0.00 39.50 3.27
1313 1422 2.232208 GGGGATTTGCTCTCACCAAAAG 59.768 50.000 0.00 0.00 35.97 2.27
1362 1472 0.996583 GACCATAGGAAACACCCCCA 59.003 55.000 0.00 0.00 40.05 4.96
1485 1595 1.450312 CGTGAGGGAAGCATGGTCC 60.450 63.158 0.00 1.19 0.00 4.46
1513 1623 3.096852 TGAGATATGAGTTGGGTGACGT 58.903 45.455 0.00 0.00 0.00 4.34
1632 1742 6.654161 CCATGCCAAATATTTGTCCTTTGAAA 59.346 34.615 23.24 0.00 36.45 2.69
1645 1755 5.776208 TGCAGTCATTATCCATGCCAAATAT 59.224 36.000 0.00 0.00 36.04 1.28
1666 1776 4.160642 AGTTCATGATAATGAGCCTGCA 57.839 40.909 3.36 0.00 33.06 4.41
1742 1854 1.901833 GGGGAAGATGCCATTTGTTGT 59.098 47.619 0.00 0.00 0.00 3.32
1767 1879 4.041917 CCGCACGCAACAAGCCAT 62.042 61.111 0.00 0.00 41.38 4.40
1885 1997 7.381323 CAATTTTCTAGCTTTTCCACCTTCAT 58.619 34.615 0.00 0.00 0.00 2.57
2099 2211 3.817084 CCATGTAGGTTGCATCATACTGG 59.183 47.826 17.62 16.94 0.00 4.00
2164 2298 4.024218 GCATCAAGCAGGTCATGAATAGAC 60.024 45.833 0.00 0.00 44.79 2.59
2165 2299 4.132336 GCATCAAGCAGGTCATGAATAGA 58.868 43.478 0.00 0.00 44.79 1.98
2166 2300 4.485024 GCATCAAGCAGGTCATGAATAG 57.515 45.455 0.00 0.00 44.79 1.73
2179 2313 4.037208 AGCAGTAATAACCATGCATCAAGC 59.963 41.667 0.00 0.00 41.14 4.01
2180 2314 5.559608 CGAGCAGTAATAACCATGCATCAAG 60.560 44.000 0.00 0.00 41.14 3.02
2181 2315 4.273235 CGAGCAGTAATAACCATGCATCAA 59.727 41.667 0.00 0.00 41.14 2.57
2182 2316 3.809279 CGAGCAGTAATAACCATGCATCA 59.191 43.478 0.00 0.00 41.14 3.07
2183 2317 3.364366 GCGAGCAGTAATAACCATGCATC 60.364 47.826 0.00 0.00 41.14 3.91
2184 2318 2.549754 GCGAGCAGTAATAACCATGCAT 59.450 45.455 0.00 0.00 41.14 3.96
2185 2319 1.939934 GCGAGCAGTAATAACCATGCA 59.060 47.619 0.00 0.00 41.14 3.96
2243 2377 7.182060 TCAAAATTTCTTTGGGCTAGACCTAT 58.818 34.615 17.75 0.00 39.10 2.57
2307 2441 4.708177 CTCCGACAACTCCATATTCCAAT 58.292 43.478 0.00 0.00 0.00 3.16
2319 2453 3.057526 GCTAAAAATTGGCTCCGACAACT 60.058 43.478 0.00 0.00 31.33 3.16
2374 2508 7.892803 GCTGAGAGCTTGCTTAAAATAAATTG 58.107 34.615 0.00 0.00 38.45 2.32
2442 2576 5.118990 TCTCCTACATAACTGCAAATGAGC 58.881 41.667 9.62 0.00 0.00 4.26
2468 2602 3.755628 TGCTCCGGCTACCGTGAC 61.756 66.667 0.00 0.00 46.80 3.67
2480 2614 1.471684 CTGCAAAATCCTCAGTGCTCC 59.528 52.381 0.00 0.00 37.87 4.70
2504 2638 3.055094 TGAGTAAGCCCTCAAGGATGAAC 60.055 47.826 0.00 0.00 38.49 3.18
2523 2657 5.406477 TGTCTTATATGCGCATAAGCTTGAG 59.594 40.000 32.02 20.83 38.07 3.02
2548 2682 9.787435 ACACATCTTTTATAAGGTCTAAACACA 57.213 29.630 0.00 0.00 32.02 3.72
2555 2689 9.686683 AGCATAAACACATCTTTTATAAGGTCT 57.313 29.630 0.00 0.00 29.75 3.85
2558 2692 9.884465 GCTAGCATAAACACATCTTTTATAAGG 57.116 33.333 10.63 0.00 29.75 2.69
2564 2698 8.408601 CCTTATGCTAGCATAAACACATCTTTT 58.591 33.333 36.94 15.23 44.95 2.27
2565 2699 7.013655 CCCTTATGCTAGCATAAACACATCTTT 59.986 37.037 36.94 15.62 44.95 2.52
2566 2700 6.488006 CCCTTATGCTAGCATAAACACATCTT 59.512 38.462 36.94 15.80 44.95 2.40
2582 2716 2.140098 ATCCCCTAAGCCCTTATGCT 57.860 50.000 0.00 0.00 45.43 3.79
2584 2718 4.731313 AGAAATCCCCTAAGCCCTTATG 57.269 45.455 0.00 0.00 0.00 1.90
2597 2731 4.417426 TTGAGGATCGGTTAGAAATCCC 57.583 45.455 0.00 0.00 39.90 3.85
2612 2746 5.590818 ACTCCTCTAACTGGTTATTGAGGA 58.409 41.667 20.44 20.44 40.87 3.71
2615 2749 9.498176 GTTTTTACTCCTCTAACTGGTTATTGA 57.502 33.333 0.00 0.00 0.00 2.57
2624 2758 3.906218 ACCGGGTTTTTACTCCTCTAACT 59.094 43.478 6.32 0.00 0.00 2.24
2626 2760 4.980339 AACCGGGTTTTTACTCCTCTAA 57.020 40.909 6.59 0.00 0.00 2.10
2664 2798 0.035458 GATTGGGGATCGGCTAGGTG 59.965 60.000 0.00 0.00 0.00 4.00
2665 2799 0.399949 TGATTGGGGATCGGCTAGGT 60.400 55.000 0.00 0.00 37.60 3.08
2673 2807 2.213499 CACTAGCGTTGATTGGGGATC 58.787 52.381 0.00 0.00 35.21 3.36
2697 2831 2.094417 GCGCGGCTGAGGATAATTTATC 59.906 50.000 8.83 7.73 34.42 1.75
2698 2832 2.076863 GCGCGGCTGAGGATAATTTAT 58.923 47.619 8.83 0.00 0.00 1.40
2699 2833 1.508632 GCGCGGCTGAGGATAATTTA 58.491 50.000 8.83 0.00 0.00 1.40
2700 2834 1.166531 GGCGCGGCTGAGGATAATTT 61.167 55.000 27.05 0.00 0.00 1.82
2701 2835 1.598130 GGCGCGGCTGAGGATAATT 60.598 57.895 27.05 0.00 0.00 1.40
2702 2836 2.031163 GGCGCGGCTGAGGATAAT 59.969 61.111 27.05 0.00 0.00 1.28
2703 2837 3.466314 TGGCGCGGCTGAGGATAA 61.466 61.111 33.23 7.69 0.00 1.75
2704 2838 4.221422 GTGGCGCGGCTGAGGATA 62.221 66.667 33.23 8.54 0.00 2.59
2733 2867 4.644234 TCGACCACCGTATAATGGAGTAAA 59.356 41.667 6.05 0.00 39.46 2.01
2772 2906 2.021457 GGAGAGGAAGAGGAGACGAAG 58.979 57.143 0.00 0.00 0.00 3.79
2795 2929 1.550976 GGAGAAGAAGAAGCGGAGGAA 59.449 52.381 0.00 0.00 0.00 3.36
2811 2945 7.560262 CCGTATGATGGAGTAAATATAGGGAGA 59.440 40.741 0.00 0.00 31.24 3.71
2817 2951 7.452189 TGACCACCGTATGATGGAGTAAATATA 59.548 37.037 0.97 0.00 39.46 0.86
2820 2954 4.407621 TGACCACCGTATGATGGAGTAAAT 59.592 41.667 0.97 0.00 39.46 1.40
2821 2955 3.770388 TGACCACCGTATGATGGAGTAAA 59.230 43.478 0.97 0.00 39.46 2.01
2822 2956 3.367321 TGACCACCGTATGATGGAGTAA 58.633 45.455 0.97 0.00 39.46 2.24
2823 2957 3.021177 TGACCACCGTATGATGGAGTA 57.979 47.619 0.97 0.00 39.46 2.59
2824 2958 1.860641 TGACCACCGTATGATGGAGT 58.139 50.000 0.97 0.00 39.46 3.85
2826 2960 2.184533 ACTTGACCACCGTATGATGGA 58.815 47.619 0.97 0.00 39.46 3.41
2827 2961 2.691409 ACTTGACCACCGTATGATGG 57.309 50.000 0.00 0.00 42.13 3.51
2848 2982 7.315890 GCATAAGCTTGAGTAAGGACATTTTT 58.684 34.615 9.86 0.00 37.91 1.94
2849 2983 6.403636 CGCATAAGCTTGAGTAAGGACATTTT 60.404 38.462 9.86 0.00 39.10 1.82
2850 2984 5.065218 CGCATAAGCTTGAGTAAGGACATTT 59.935 40.000 9.86 0.00 39.10 2.32
2851 2985 4.572389 CGCATAAGCTTGAGTAAGGACATT 59.428 41.667 9.86 0.00 39.10 2.71
2853 2987 3.521560 CGCATAAGCTTGAGTAAGGACA 58.478 45.455 9.86 0.00 39.10 4.02
2854 2988 2.285488 GCGCATAAGCTTGAGTAAGGAC 59.715 50.000 9.86 0.00 39.10 3.85
2855 2989 2.168521 AGCGCATAAGCTTGAGTAAGGA 59.831 45.455 11.47 0.00 46.80 3.36
2856 2990 2.555199 AGCGCATAAGCTTGAGTAAGG 58.445 47.619 11.47 0.00 46.80 2.69
2866 3000 1.328986 GAGGTGAGAAAGCGCATAAGC 59.671 52.381 11.47 0.00 37.42 3.09
2867 3001 2.863137 GAGAGGTGAGAAAGCGCATAAG 59.137 50.000 11.47 0.00 0.00 1.73
2868 3002 2.233676 TGAGAGGTGAGAAAGCGCATAA 59.766 45.455 11.47 0.00 0.00 1.90
2869 3003 1.824852 TGAGAGGTGAGAAAGCGCATA 59.175 47.619 11.47 0.00 0.00 3.14
2870 3004 0.610174 TGAGAGGTGAGAAAGCGCAT 59.390 50.000 11.47 0.00 0.00 4.73
2873 3007 2.447244 AACTGAGAGGTGAGAAAGCG 57.553 50.000 0.00 0.00 0.00 4.68
2874 3008 3.258228 GCTAACTGAGAGGTGAGAAAGC 58.742 50.000 0.00 0.00 0.00 3.51
2875 3009 3.513515 AGGCTAACTGAGAGGTGAGAAAG 59.486 47.826 0.00 0.00 0.00 2.62
2876 3010 3.511477 AGGCTAACTGAGAGGTGAGAAA 58.489 45.455 0.00 0.00 0.00 2.52
2878 3012 2.828520 CAAGGCTAACTGAGAGGTGAGA 59.171 50.000 0.00 0.00 0.00 3.27
2880 3014 1.276421 GCAAGGCTAACTGAGAGGTGA 59.724 52.381 0.00 0.00 0.00 4.02
2882 3016 1.277557 CAGCAAGGCTAACTGAGAGGT 59.722 52.381 10.36 0.00 36.40 3.85
2884 3018 2.758736 ACAGCAAGGCTAACTGAGAG 57.241 50.000 20.02 0.00 36.40 3.20
2885 3019 2.368548 TGAACAGCAAGGCTAACTGAGA 59.631 45.455 20.02 4.13 36.40 3.27
2887 3021 2.104792 AGTGAACAGCAAGGCTAACTGA 59.895 45.455 20.02 0.00 36.40 3.41
2888 3022 2.498167 AGTGAACAGCAAGGCTAACTG 58.502 47.619 13.49 13.49 36.40 3.16
2890 3024 3.665190 AGTAGTGAACAGCAAGGCTAAC 58.335 45.455 0.00 0.00 36.40 2.34
2891 3025 3.578716 AGAGTAGTGAACAGCAAGGCTAA 59.421 43.478 0.00 0.00 36.40 3.09
2892 3026 3.165875 AGAGTAGTGAACAGCAAGGCTA 58.834 45.455 0.00 0.00 36.40 3.93
2893 3027 1.974236 AGAGTAGTGAACAGCAAGGCT 59.026 47.619 0.00 0.00 40.77 4.58
2894 3028 2.464157 AGAGTAGTGAACAGCAAGGC 57.536 50.000 0.00 0.00 0.00 4.35
2895 3029 7.440523 AAAAATAGAGTAGTGAACAGCAAGG 57.559 36.000 0.00 0.00 0.00 3.61
2923 3057 0.108138 AGAATGAGTAGTGCACCCGC 60.108 55.000 14.63 7.08 39.24 6.13
2925 3059 3.366374 GCAAAAGAATGAGTAGTGCACCC 60.366 47.826 14.63 4.40 0.00 4.61
2926 3060 3.503748 AGCAAAAGAATGAGTAGTGCACC 59.496 43.478 14.63 0.00 32.98 5.01
2927 3061 4.023707 ACAGCAAAAGAATGAGTAGTGCAC 60.024 41.667 9.40 9.40 32.98 4.57
2928 3062 4.136796 ACAGCAAAAGAATGAGTAGTGCA 58.863 39.130 0.00 0.00 32.98 4.57
2929 3063 4.756084 ACAGCAAAAGAATGAGTAGTGC 57.244 40.909 0.00 0.00 0.00 4.40
2930 3064 6.299604 CGTTACAGCAAAAGAATGAGTAGTG 58.700 40.000 0.00 0.00 0.00 2.74
2931 3065 5.408604 CCGTTACAGCAAAAGAATGAGTAGT 59.591 40.000 0.00 0.00 0.00 2.73
2932 3066 5.163854 CCCGTTACAGCAAAAGAATGAGTAG 60.164 44.000 0.00 0.00 0.00 2.57
2934 3068 3.502211 CCCGTTACAGCAAAAGAATGAGT 59.498 43.478 0.00 0.00 0.00 3.41
2935 3069 3.670627 GCCCGTTACAGCAAAAGAATGAG 60.671 47.826 0.00 0.00 0.00 2.90
2936 3070 2.227865 GCCCGTTACAGCAAAAGAATGA 59.772 45.455 0.00 0.00 0.00 2.57
2937 3071 2.030363 TGCCCGTTACAGCAAAAGAATG 60.030 45.455 0.00 0.00 35.69 2.67
2938 3072 2.228822 CTGCCCGTTACAGCAAAAGAAT 59.771 45.455 0.00 0.00 38.82 2.40
2939 3073 1.606668 CTGCCCGTTACAGCAAAAGAA 59.393 47.619 0.00 0.00 38.82 2.52
2940 3074 1.234821 CTGCCCGTTACAGCAAAAGA 58.765 50.000 0.00 0.00 38.82 2.52
2941 3075 0.240945 CCTGCCCGTTACAGCAAAAG 59.759 55.000 0.00 0.00 38.82 2.27
2942 3076 0.466555 ACCTGCCCGTTACAGCAAAA 60.467 50.000 0.00 0.00 38.82 2.44
2943 3077 0.466555 AACCTGCCCGTTACAGCAAA 60.467 50.000 0.00 0.00 38.82 3.68
2944 3078 0.466555 AAACCTGCCCGTTACAGCAA 60.467 50.000 0.00 0.00 38.82 3.91
2945 3079 1.149627 AAACCTGCCCGTTACAGCA 59.850 52.632 0.00 0.00 37.46 4.41
2946 3080 0.887387 TCAAACCTGCCCGTTACAGC 60.887 55.000 0.00 0.00 33.65 4.40
2948 3082 1.134037 AGTTCAAACCTGCCCGTTACA 60.134 47.619 0.00 0.00 0.00 2.41
2949 3083 1.265905 CAGTTCAAACCTGCCCGTTAC 59.734 52.381 0.00 0.00 0.00 2.50
2950 3084 1.600023 CAGTTCAAACCTGCCCGTTA 58.400 50.000 0.00 0.00 0.00 3.18
2951 3085 1.734388 GCAGTTCAAACCTGCCCGTT 61.734 55.000 1.00 0.00 38.08 4.44
2952 3086 2.193536 GCAGTTCAAACCTGCCCGT 61.194 57.895 1.00 0.00 38.08 5.28
2953 3087 2.133742 CTGCAGTTCAAACCTGCCCG 62.134 60.000 5.25 0.00 42.83 6.13
2961 3137 2.495270 TGCCTCAAAACTGCAGTTCAAA 59.505 40.909 31.20 17.80 37.25 2.69
2972 3148 1.963515 ACTCCCAACATGCCTCAAAAC 59.036 47.619 0.00 0.00 0.00 2.43
2996 3172 1.395820 CGCGCACAAAATTCACAAAGC 60.396 47.619 8.75 0.00 0.00 3.51
2998 3174 2.115595 CTCGCGCACAAAATTCACAAA 58.884 42.857 8.75 0.00 0.00 2.83
3015 3191 1.270839 TGAAGAAGAACCCCTTGCTCG 60.271 52.381 0.00 0.00 34.68 5.03
3062 3238 2.223377 GGTTCCGTCATCAGTTTGACAC 59.777 50.000 5.54 0.00 45.08 3.67
3066 3242 2.414559 GCATGGTTCCGTCATCAGTTTG 60.415 50.000 0.00 0.00 0.00 2.93
3072 3248 2.413112 CGATATGCATGGTTCCGTCATC 59.587 50.000 10.16 0.00 0.00 2.92
3073 3249 2.224281 ACGATATGCATGGTTCCGTCAT 60.224 45.455 10.16 0.00 0.00 3.06
3074 3250 1.138069 ACGATATGCATGGTTCCGTCA 59.862 47.619 10.16 0.00 0.00 4.35
3075 3251 1.526887 CACGATATGCATGGTTCCGTC 59.473 52.381 10.16 0.00 0.00 4.79
3076 3252 1.134521 ACACGATATGCATGGTTCCGT 60.135 47.619 10.16 8.46 0.00 4.69
3077 3253 1.581934 ACACGATATGCATGGTTCCG 58.418 50.000 10.16 7.84 0.00 4.30
3078 3254 4.370364 AAAACACGATATGCATGGTTCC 57.630 40.909 10.16 0.00 0.00 3.62
3079 3255 6.974677 CATAAAACACGATATGCATGGTTC 57.025 37.500 10.16 2.79 0.00 3.62
3112 3288 9.722056 GACTTTTCGCATGATATTATTCAAGTT 57.278 29.630 0.00 0.00 0.00 2.66
3113 3289 9.113838 AGACTTTTCGCATGATATTATTCAAGT 57.886 29.630 0.00 0.00 0.00 3.16
3114 3290 9.378597 CAGACTTTTCGCATGATATTATTCAAG 57.621 33.333 0.00 0.00 0.00 3.02
3115 3291 7.857389 GCAGACTTTTCGCATGATATTATTCAA 59.143 33.333 0.00 0.00 0.00 2.69
3116 3292 7.355017 GCAGACTTTTCGCATGATATTATTCA 58.645 34.615 0.00 0.00 0.00 2.57
3117 3293 6.798959 GGCAGACTTTTCGCATGATATTATTC 59.201 38.462 0.00 0.00 0.00 1.75
3118 3294 6.294176 GGGCAGACTTTTCGCATGATATTATT 60.294 38.462 0.00 0.00 0.00 1.40
3119 3295 5.182001 GGGCAGACTTTTCGCATGATATTAT 59.818 40.000 0.00 0.00 0.00 1.28
3120 3296 4.515191 GGGCAGACTTTTCGCATGATATTA 59.485 41.667 0.00 0.00 0.00 0.98
3121 3297 3.316308 GGGCAGACTTTTCGCATGATATT 59.684 43.478 0.00 0.00 0.00 1.28
3122 3298 2.880890 GGGCAGACTTTTCGCATGATAT 59.119 45.455 0.00 0.00 0.00 1.63
3123 3299 2.288666 GGGCAGACTTTTCGCATGATA 58.711 47.619 0.00 0.00 0.00 2.15
3124 3300 1.098050 GGGCAGACTTTTCGCATGAT 58.902 50.000 0.00 0.00 0.00 2.45
3125 3301 0.960364 GGGGCAGACTTTTCGCATGA 60.960 55.000 0.00 0.00 0.00 3.07
3126 3302 1.243342 TGGGGCAGACTTTTCGCATG 61.243 55.000 0.00 0.00 0.00 4.06
3127 3303 0.962356 CTGGGGCAGACTTTTCGCAT 60.962 55.000 0.00 0.00 32.44 4.73
3128 3304 1.600636 CTGGGGCAGACTTTTCGCA 60.601 57.895 0.00 0.00 32.44 5.10
3129 3305 2.982744 GCTGGGGCAGACTTTTCGC 61.983 63.158 0.00 0.00 38.54 4.70
3130 3306 1.600636 TGCTGGGGCAGACTTTTCG 60.601 57.895 0.00 0.00 44.28 3.46
3131 3307 4.500265 TGCTGGGGCAGACTTTTC 57.500 55.556 0.00 0.00 44.28 2.29


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.