Multiple sequence alignment - TraesCS6A01G040600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G040600 chr6A 100.000 4404 0 0 1 4404 21143996 21139593 0.000000e+00 8133.0
1 TraesCS6A01G040600 chr6D 92.402 2290 114 25 1197 3460 20853802 20851547 0.000000e+00 3210.0
2 TraesCS6A01G040600 chr6D 86.409 1214 94 38 1 1202 20855130 20853976 0.000000e+00 1262.0
3 TraesCS6A01G040600 chr6D 93.656 331 21 0 3706 4036 309103612 309103942 3.060000e-136 496.0
4 TraesCS6A01G040600 chr6D 83.262 233 16 8 3498 3711 20851539 20851311 4.500000e-45 193.0
5 TraesCS6A01G040600 chr6D 93.878 49 0 2 4035 4083 20851312 20851267 2.200000e-08 71.3
6 TraesCS6A01G040600 chr6B 94.745 1218 55 6 1197 2409 35823885 35822672 0.000000e+00 1886.0
7 TraesCS6A01G040600 chr6B 87.342 1343 73 35 2411 3711 35822379 35821092 0.000000e+00 1448.0
8 TraesCS6A01G040600 chr6B 91.348 705 34 14 467 1161 35824768 35824081 0.000000e+00 939.0
9 TraesCS6A01G040600 chr6B 93.976 332 19 1 3706 4036 544762594 544762263 6.580000e-138 501.0
10 TraesCS6A01G040600 chr6B 89.851 335 21 4 20 353 35825157 35824835 6.810000e-113 418.0
11 TraesCS6A01G040600 chr6B 91.235 251 22 0 4154 4404 35820981 35820731 4.220000e-90 342.0
12 TraesCS6A01G040600 chr6B 94.118 34 2 0 83 116 170142928 170142895 8.000000e-03 52.8
13 TraesCS6A01G040600 chr3A 94.512 328 18 0 3710 4037 83570496 83570823 1.410000e-139 507.0
14 TraesCS6A01G040600 chr3A 94.495 327 18 0 3710 4036 145252793 145252467 5.080000e-139 505.0
15 TraesCS6A01G040600 chr3A 94.207 328 19 0 3710 4037 151184679 151185006 6.580000e-138 501.0
16 TraesCS6A01G040600 chr7A 94.225 329 19 0 3710 4038 651309915 651309587 1.830000e-138 503.0
17 TraesCS6A01G040600 chr7A 84.112 107 13 2 83 189 572346063 572346165 2.800000e-17 100.0
18 TraesCS6A01G040600 chr7A 88.235 68 4 4 4088 4153 38806746 38806811 1.310000e-10 78.7
19 TraesCS6A01G040600 chr4A 94.207 328 19 0 3710 4037 534742168 534742495 6.580000e-138 501.0
20 TraesCS6A01G040600 chr4A 82.857 105 12 4 473 571 513322521 513322417 6.070000e-14 89.8
21 TraesCS6A01G040600 chr4A 86.957 69 7 2 4086 4153 163252252 163252319 4.720000e-10 76.8
22 TraesCS6A01G040600 chr5A 94.172 326 19 0 3712 4037 514725111 514725436 8.510000e-137 497.0
23 TraesCS6A01G040600 chr3D 93.155 336 23 0 3701 4036 507868331 507868666 1.100000e-135 494.0
24 TraesCS6A01G040600 chr3D 88.406 69 6 2 4086 4153 138013196 138013263 1.020000e-11 82.4
25 TraesCS6A01G040600 chr3D 85.185 54 8 0 140 193 4878399 4878452 6.150000e-04 56.5
26 TraesCS6A01G040600 chr2A 89.899 99 6 1 55 153 162427890 162427796 1.660000e-24 124.0
27 TraesCS6A01G040600 chr2A 86.765 68 9 0 4086 4153 74796225 74796292 4.720000e-10 76.8
28 TraesCS6A01G040600 chr2A 79.545 88 9 6 490 570 654718370 654718455 2.000000e-03 54.7
29 TraesCS6A01G040600 chr7D 85.586 111 12 2 83 193 37952114 37952220 3.600000e-21 113.0
30 TraesCS6A01G040600 chr5B 95.161 62 3 0 4086 4147 526994768 526994829 1.010000e-16 99.0
31 TraesCS6A01G040600 chr5B 95.161 62 3 0 4086 4147 527018147 527018208 1.010000e-16 99.0
32 TraesCS6A01G040600 chr7B 92.537 67 5 0 4087 4153 679362941 679362875 3.630000e-16 97.1
33 TraesCS6A01G040600 chr3B 88.406 69 6 2 4086 4153 201068766 201068833 1.020000e-11 82.4
34 TraesCS6A01G040600 chr4D 87.324 71 4 3 506 571 446991811 446991741 4.720000e-10 76.8
35 TraesCS6A01G040600 chr1B 88.679 53 6 0 4101 4153 368045469 368045521 1.020000e-06 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G040600 chr6A 21139593 21143996 4403 True 8133.000 8133 100.00000 1 4404 1 chr6A.!!$R1 4403
1 TraesCS6A01G040600 chr6D 20851267 20855130 3863 True 1184.075 3210 88.98775 1 4083 4 chr6D.!!$R1 4082
2 TraesCS6A01G040600 chr6B 35820731 35825157 4426 True 1006.600 1886 90.90420 20 4404 5 chr6B.!!$R3 4384

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
410 459 2.028020 GTGTCGTCTTCCTCCATTTCCT 60.028 50.0 0.00 0.00 0.00 3.36 F
1219 1489 0.096281 TGTGCAAAACTATAGCGCGC 59.904 50.0 26.66 26.66 41.39 6.86 F
1912 2199 0.109723 AGCTACTTTGTTTCCGGGCA 59.890 50.0 0.00 0.00 0.00 5.36 F
2937 3517 0.330604 AGTGGATCAGGCACAAGCAT 59.669 50.0 0.00 0.00 44.61 3.79 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1685 1972 1.002888 CACACTTGATGTCCAGGAGCT 59.997 52.381 0.00 0.0 40.64 4.09 R
2571 3150 0.611714 AGGTACCTTAACTGCGGGTG 59.388 55.000 9.21 0.0 34.86 4.61 R
3341 3928 0.966920 GTATCATCGTCCCCATCCGT 59.033 55.000 0.00 0.0 0.00 4.69 R
4343 4990 0.381801 GCCTTGAGTGTGTGTGTTGG 59.618 55.000 0.00 0.0 0.00 3.77 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
120 121 5.809001 TGATGCTCTTTGAGACCTGTAATT 58.191 37.500 0.00 0.00 0.00 1.40
121 122 6.946340 TGATGCTCTTTGAGACCTGTAATTA 58.054 36.000 0.00 0.00 0.00 1.40
122 123 7.394016 TGATGCTCTTTGAGACCTGTAATTAA 58.606 34.615 0.00 0.00 0.00 1.40
123 124 8.049117 TGATGCTCTTTGAGACCTGTAATTAAT 58.951 33.333 0.00 0.00 0.00 1.40
205 254 5.847111 TGTGTAGACAGAGTTGTAAGTGT 57.153 39.130 0.00 0.00 37.76 3.55
206 255 5.588240 TGTGTAGACAGAGTTGTAAGTGTG 58.412 41.667 0.00 0.00 37.76 3.82
207 256 4.444720 GTGTAGACAGAGTTGTAAGTGTGC 59.555 45.833 0.00 0.00 37.76 4.57
208 257 4.341235 TGTAGACAGAGTTGTAAGTGTGCT 59.659 41.667 0.00 0.00 37.76 4.40
209 258 3.722147 AGACAGAGTTGTAAGTGTGCTG 58.278 45.455 0.00 0.00 37.76 4.41
210 259 3.384789 AGACAGAGTTGTAAGTGTGCTGA 59.615 43.478 0.00 0.00 37.76 4.26
211 260 4.039730 AGACAGAGTTGTAAGTGTGCTGAT 59.960 41.667 0.00 0.00 37.76 2.90
212 261 4.708177 ACAGAGTTGTAAGTGTGCTGATT 58.292 39.130 0.00 0.00 35.25 2.57
213 262 5.126067 ACAGAGTTGTAAGTGTGCTGATTT 58.874 37.500 0.00 0.00 35.25 2.17
214 263 5.590259 ACAGAGTTGTAAGTGTGCTGATTTT 59.410 36.000 0.00 0.00 35.25 1.82
215 264 6.095440 ACAGAGTTGTAAGTGTGCTGATTTTT 59.905 34.615 0.00 0.00 35.25 1.94
216 265 6.415867 CAGAGTTGTAAGTGTGCTGATTTTTG 59.584 38.462 0.00 0.00 0.00 2.44
217 266 6.095440 AGAGTTGTAAGTGTGCTGATTTTTGT 59.905 34.615 0.00 0.00 0.00 2.83
218 267 6.630071 AGTTGTAAGTGTGCTGATTTTTGTT 58.370 32.000 0.00 0.00 0.00 2.83
219 268 7.096551 AGTTGTAAGTGTGCTGATTTTTGTTT 58.903 30.769 0.00 0.00 0.00 2.83
220 269 7.275560 AGTTGTAAGTGTGCTGATTTTTGTTTC 59.724 33.333 0.00 0.00 0.00 2.78
221 270 6.039616 TGTAAGTGTGCTGATTTTTGTTTCC 58.960 36.000 0.00 0.00 0.00 3.13
222 271 3.705604 AGTGTGCTGATTTTTGTTTCCG 58.294 40.909 0.00 0.00 0.00 4.30
223 272 2.218530 GTGTGCTGATTTTTGTTTCCGC 59.781 45.455 0.00 0.00 0.00 5.54
224 273 2.159184 TGTGCTGATTTTTGTTTCCGCA 60.159 40.909 0.00 0.00 30.97 5.69
225 274 2.863137 GTGCTGATTTTTGTTTCCGCAA 59.137 40.909 0.00 0.00 34.55 4.85
226 275 3.308323 GTGCTGATTTTTGTTTCCGCAAA 59.692 39.130 0.00 0.00 34.55 3.68
227 276 3.935203 TGCTGATTTTTGTTTCCGCAAAA 59.065 34.783 0.00 0.00 43.83 2.44
252 301 3.821033 AGGTGCACTGATTTTTAGGTCAC 59.179 43.478 17.98 0.00 0.00 3.67
354 403 3.015145 GGGCAGGTCCAAGGCCTA 61.015 66.667 5.16 0.00 46.87 3.93
410 459 2.028020 GTGTCGTCTTCCTCCATTTCCT 60.028 50.000 0.00 0.00 0.00 3.36
411 460 2.637872 TGTCGTCTTCCTCCATTTCCTT 59.362 45.455 0.00 0.00 0.00 3.36
412 461 3.072476 TGTCGTCTTCCTCCATTTCCTTT 59.928 43.478 0.00 0.00 0.00 3.11
413 462 3.685272 GTCGTCTTCCTCCATTTCCTTTC 59.315 47.826 0.00 0.00 0.00 2.62
414 463 3.010420 CGTCTTCCTCCATTTCCTTTCC 58.990 50.000 0.00 0.00 0.00 3.13
415 464 3.307762 CGTCTTCCTCCATTTCCTTTCCT 60.308 47.826 0.00 0.00 0.00 3.36
416 465 4.265893 GTCTTCCTCCATTTCCTTTCCTC 58.734 47.826 0.00 0.00 0.00 3.71
417 466 3.916349 TCTTCCTCCATTTCCTTTCCTCA 59.084 43.478 0.00 0.00 0.00 3.86
418 467 4.353788 TCTTCCTCCATTTCCTTTCCTCAA 59.646 41.667 0.00 0.00 0.00 3.02
419 468 4.034285 TCCTCCATTTCCTTTCCTCAAC 57.966 45.455 0.00 0.00 0.00 3.18
420 469 3.657727 TCCTCCATTTCCTTTCCTCAACT 59.342 43.478 0.00 0.00 0.00 3.16
421 470 4.106341 TCCTCCATTTCCTTTCCTCAACTT 59.894 41.667 0.00 0.00 0.00 2.66
422 471 4.460731 CCTCCATTTCCTTTCCTCAACTTC 59.539 45.833 0.00 0.00 0.00 3.01
423 472 4.072131 TCCATTTCCTTTCCTCAACTTCG 58.928 43.478 0.00 0.00 0.00 3.79
424 473 3.821033 CCATTTCCTTTCCTCAACTTCGT 59.179 43.478 0.00 0.00 0.00 3.85
425 474 4.083271 CCATTTCCTTTCCTCAACTTCGTC 60.083 45.833 0.00 0.00 0.00 4.20
426 475 4.417426 TTTCCTTTCCTCAACTTCGTCT 57.583 40.909 0.00 0.00 0.00 4.18
427 476 5.540400 TTTCCTTTCCTCAACTTCGTCTA 57.460 39.130 0.00 0.00 0.00 2.59
428 477 5.540400 TTCCTTTCCTCAACTTCGTCTAA 57.460 39.130 0.00 0.00 0.00 2.10
429 478 5.540400 TCCTTTCCTCAACTTCGTCTAAA 57.460 39.130 0.00 0.00 0.00 1.85
430 479 5.920903 TCCTTTCCTCAACTTCGTCTAAAA 58.079 37.500 0.00 0.00 0.00 1.52
431 480 6.350906 TCCTTTCCTCAACTTCGTCTAAAAA 58.649 36.000 0.00 0.00 0.00 1.94
464 513 2.596851 AACTGCATCGGGGCTCACT 61.597 57.895 0.00 0.00 34.04 3.41
465 514 2.129555 AACTGCATCGGGGCTCACTT 62.130 55.000 0.00 0.00 34.04 3.16
901 975 5.814481 TCAAACATGATGTTCCACCATCTA 58.186 37.500 11.70 0.00 40.14 1.98
902 976 6.244654 TCAAACATGATGTTCCACCATCTAA 58.755 36.000 11.70 0.00 40.14 2.10
903 977 6.150976 TCAAACATGATGTTCCACCATCTAAC 59.849 38.462 11.70 0.00 40.14 2.34
934 1008 3.815401 ACAGCTTAAATTGAACTGCGAGT 59.185 39.130 0.00 0.00 31.46 4.18
987 1070 8.058328 GCTGCTGTGTTTTATTTTCTTTTTCTC 58.942 33.333 0.00 0.00 0.00 2.87
1009 1092 6.378848 TCTCTTGATTGATGAAATGGATGCAA 59.621 34.615 0.00 0.00 0.00 4.08
1034 1122 3.199727 ACAGCCCCAATGTTTCTTTTGTT 59.800 39.130 0.00 0.00 0.00 2.83
1035 1123 3.560896 CAGCCCCAATGTTTCTTTTGTTG 59.439 43.478 0.00 0.00 0.00 3.33
1081 1170 2.124903 CAGTGCTGCTGCTTTCTTTTG 58.875 47.619 17.00 1.57 38.52 2.44
1088 1177 2.699846 TGCTGCTTTCTTTTGTCCCAAT 59.300 40.909 0.00 0.00 0.00 3.16
1101 1190 1.133025 GTCCCAATTGGCGATGAACTG 59.867 52.381 19.75 2.07 0.00 3.16
1103 1192 0.457035 CCAATTGGCGATGAACTGGG 59.543 55.000 12.53 0.00 0.00 4.45
1167 1256 2.093128 CCACATAAGTACAGGGGTGGTC 60.093 54.545 14.88 0.00 40.60 4.02
1219 1489 0.096281 TGTGCAAAACTATAGCGCGC 59.904 50.000 26.66 26.66 41.39 6.86
1244 1514 1.699730 GGGTGTTTTAACCAGTGGCT 58.300 50.000 9.78 0.00 42.47 4.75
1265 1535 3.999663 CTCTCTCTCACGGCATTCTTTTT 59.000 43.478 0.00 0.00 0.00 1.94
1297 1567 5.294356 GGTGTTTTAAAATGAACAGGGGTC 58.706 41.667 3.52 0.00 36.52 4.46
1405 1676 7.722285 TCACTAATTTACTGCCCTTTGTTAGTT 59.278 33.333 0.00 0.00 31.02 2.24
1418 1689 6.324819 CCTTTGTTAGTTATCACATTGCCAG 58.675 40.000 0.00 0.00 0.00 4.85
1585 1872 2.559668 CCAATTTTTGCTCAGGCTCAGA 59.440 45.455 0.00 0.00 39.59 3.27
1613 1900 1.217511 CTGAGCAGACATCGCCACT 59.782 57.895 0.00 0.00 0.00 4.00
1723 2010 3.809905 TGTGCATACTTACACAACACCA 58.190 40.909 0.00 0.00 43.48 4.17
1864 2151 6.173339 GGAGACATTGAGGTCAAGTATGAAA 58.827 40.000 0.00 0.00 40.29 2.69
1912 2199 0.109723 AGCTACTTTGTTTCCGGGCA 59.890 50.000 0.00 0.00 0.00 5.36
2035 2322 2.527123 TGTTGGCCCCTACGACCA 60.527 61.111 0.00 0.00 0.00 4.02
2209 2496 2.252072 TATCAACCGGGCAGACAGGC 62.252 60.000 6.32 0.00 38.06 4.85
2513 3092 2.126110 CATTTTGGGGTTCCGCGC 60.126 61.111 0.00 0.00 35.24 6.86
2534 3113 3.581755 CATTTTTGCATGTCCCACTCTG 58.418 45.455 0.00 0.00 0.00 3.35
2535 3114 2.655090 TTTTGCATGTCCCACTCTGA 57.345 45.000 0.00 0.00 0.00 3.27
2537 3116 2.885135 TTGCATGTCCCACTCTGATT 57.115 45.000 0.00 0.00 0.00 2.57
2539 3118 3.998913 TGCATGTCCCACTCTGATTTA 57.001 42.857 0.00 0.00 0.00 1.40
2543 3122 6.233434 TGCATGTCCCACTCTGATTTATATC 58.767 40.000 0.00 0.00 0.00 1.63
2575 3155 3.674997 TCTGTCACTTTATCTTGCACCC 58.325 45.455 0.00 0.00 0.00 4.61
2576 3156 2.416547 CTGTCACTTTATCTTGCACCCG 59.583 50.000 0.00 0.00 0.00 5.28
2591 3171 1.002773 CACCCGCAGTTAAGGTACCTT 59.997 52.381 29.46 29.46 39.83 3.50
2747 3327 4.503714 ACTTCAGGTTCTTTTCACCTCA 57.496 40.909 0.00 0.00 43.30 3.86
2750 3330 3.664107 TCAGGTTCTTTTCACCTCATCG 58.336 45.455 0.00 0.00 43.30 3.84
2762 3342 3.835978 TCACCTCATCGTCCCTCTTTTTA 59.164 43.478 0.00 0.00 0.00 1.52
2773 3353 5.009210 CGTCCCTCTTTTTATTTCCACACAA 59.991 40.000 0.00 0.00 0.00 3.33
2850 3430 2.368221 CTCTCTCATGGAGGATCAACCC 59.632 54.545 10.23 0.00 42.10 4.11
2937 3517 0.330604 AGTGGATCAGGCACAAGCAT 59.669 50.000 0.00 0.00 44.61 3.79
2942 3522 3.216800 GGATCAGGCACAAGCATATTGA 58.783 45.455 0.00 0.00 44.61 2.57
3004 3584 1.552792 CAAAACACCCACCCAAGTTGT 59.447 47.619 1.45 0.00 0.00 3.32
3062 3642 6.795399 TCTTTTTCTTTGACAAGGATGTGTC 58.205 36.000 0.27 0.00 46.74 3.67
3063 3643 5.514274 TTTTCTTTGACAAGGATGTGTCC 57.486 39.130 0.27 0.00 46.13 4.02
3085 3671 4.141688 CCTCTACCCTGTATCACCTTTTCC 60.142 50.000 0.00 0.00 0.00 3.13
3104 3690 1.530655 CACACCCAAACCTCACCCC 60.531 63.158 0.00 0.00 0.00 4.95
3108 3694 0.340208 ACCCAAACCTCACCCCAAAA 59.660 50.000 0.00 0.00 0.00 2.44
3113 3699 1.341080 AACCTCACCCCAAAATGCTG 58.659 50.000 0.00 0.00 0.00 4.41
3199 3786 1.067295 TTGCATCAGGGTTGGAGACT 58.933 50.000 0.00 0.00 0.00 3.24
3287 3874 1.135803 GCAGGCGCAACGAAATAGAAA 60.136 47.619 10.83 0.00 38.36 2.52
3337 3924 2.799412 GTCATCATCAGAATCTGACGGC 59.201 50.000 15.96 2.56 43.63 5.68
3341 3928 0.817654 ATCAGAATCTGACGGCGACA 59.182 50.000 15.96 14.00 43.63 4.35
3343 3930 1.154016 AGAATCTGACGGCGACACG 60.154 57.895 16.62 8.16 40.31 4.49
3373 3960 1.915350 GATGATACGTCGTTTGCGTCA 59.085 47.619 1.78 1.63 42.85 4.35
3376 3963 2.182825 GATACGTCGTTTGCGTCATCT 58.817 47.619 1.78 0.00 42.85 2.90
3381 3968 2.058798 GTCGTTTGCGTCATCTTCAGA 58.941 47.619 0.00 0.00 39.49 3.27
3437 4024 6.300703 TGGTTTACTTTGTACTGGTTGCTAT 58.699 36.000 0.00 0.00 0.00 2.97
3474 4074 6.968131 TTTTTCTCGGATCTATCAAGTGTG 57.032 37.500 0.00 0.00 0.00 3.82
3476 4076 6.471233 TTTCTCGGATCTATCAAGTGTGAT 57.529 37.500 0.00 0.00 46.52 3.06
3477 4077 5.444663 TCTCGGATCTATCAAGTGTGATG 57.555 43.478 0.00 0.00 44.49 3.07
3478 4078 3.982475 TCGGATCTATCAAGTGTGATGC 58.018 45.455 0.00 0.00 44.49 3.91
3479 4079 3.384467 TCGGATCTATCAAGTGTGATGCA 59.616 43.478 0.00 0.00 44.49 3.96
3480 4080 4.122046 CGGATCTATCAAGTGTGATGCAA 58.878 43.478 0.00 0.00 44.49 4.08
3481 4081 4.753610 CGGATCTATCAAGTGTGATGCAAT 59.246 41.667 0.00 0.00 44.49 3.56
3482 4082 5.107182 CGGATCTATCAAGTGTGATGCAATC 60.107 44.000 0.00 0.00 44.49 2.67
3484 4084 6.073167 GGATCTATCAAGTGTGATGCAATCTG 60.073 42.308 0.00 0.00 45.81 2.90
3485 4085 5.737860 TCTATCAAGTGTGATGCAATCTGT 58.262 37.500 0.00 0.00 45.81 3.41
3486 4086 6.877236 TCTATCAAGTGTGATGCAATCTGTA 58.123 36.000 0.00 0.00 45.81 2.74
3487 4087 7.503549 TCTATCAAGTGTGATGCAATCTGTAT 58.496 34.615 0.00 0.00 45.81 2.29
3488 4088 5.806366 TCAAGTGTGATGCAATCTGTATG 57.194 39.130 0.00 0.00 45.81 2.39
3489 4089 5.247862 TCAAGTGTGATGCAATCTGTATGT 58.752 37.500 0.00 0.00 45.81 2.29
3500 4101 4.848357 CAATCTGTATGTTGTCCCCTCTT 58.152 43.478 0.00 0.00 0.00 2.85
3512 4113 3.055094 TGTCCCCTCTTTGCTAGTGATTC 60.055 47.826 0.00 0.00 0.00 2.52
3528 4129 9.542462 GCTAGTGATTCATAACCAACAATACTA 57.458 33.333 0.00 0.00 0.00 1.82
3557 4158 7.538678 GCATTTTCAGACTTCGTTTATCAACAT 59.461 33.333 0.00 0.00 32.54 2.71
3597 4213 8.196771 GCTGTTCATTTGGGACATTATAATTCA 58.803 33.333 0.00 0.00 39.30 2.57
3627 4243 3.596214 GGTCGGAGTTATTTTCTCAGCA 58.404 45.455 0.00 0.00 34.04 4.41
3629 4245 4.636206 GGTCGGAGTTATTTTCTCAGCATT 59.364 41.667 0.00 0.00 34.04 3.56
3658 4278 3.067106 CACTCATATGTAATCGGGCCAC 58.933 50.000 4.39 0.00 0.00 5.01
3709 4331 4.715297 AGGTAGTTATGGGTCATCGTTTCT 59.285 41.667 0.00 0.00 0.00 2.52
3710 4332 5.895534 AGGTAGTTATGGGTCATCGTTTCTA 59.104 40.000 0.00 0.00 0.00 2.10
3711 4333 5.981915 GGTAGTTATGGGTCATCGTTTCTAC 59.018 44.000 0.00 0.00 0.00 2.59
3712 4334 5.934402 AGTTATGGGTCATCGTTTCTACT 57.066 39.130 0.00 0.00 0.00 2.57
3713 4335 5.903810 AGTTATGGGTCATCGTTTCTACTC 58.096 41.667 0.00 0.00 0.00 2.59
3714 4336 3.821421 ATGGGTCATCGTTTCTACTCC 57.179 47.619 0.00 0.00 0.00 3.85
3715 4337 1.829222 TGGGTCATCGTTTCTACTCCC 59.171 52.381 0.00 0.00 34.77 4.30
3716 4338 2.108970 GGGTCATCGTTTCTACTCCCT 58.891 52.381 0.00 0.00 0.00 4.20
3717 4339 2.101082 GGGTCATCGTTTCTACTCCCTC 59.899 54.545 0.00 0.00 0.00 4.30
3718 4340 2.101082 GGTCATCGTTTCTACTCCCTCC 59.899 54.545 0.00 0.00 0.00 4.30
3719 4341 3.025262 GTCATCGTTTCTACTCCCTCCT 58.975 50.000 0.00 0.00 0.00 3.69
3720 4342 3.447944 GTCATCGTTTCTACTCCCTCCTT 59.552 47.826 0.00 0.00 0.00 3.36
3721 4343 4.081586 GTCATCGTTTCTACTCCCTCCTTT 60.082 45.833 0.00 0.00 0.00 3.11
3722 4344 4.159879 TCATCGTTTCTACTCCCTCCTTTC 59.840 45.833 0.00 0.00 0.00 2.62
3723 4345 2.830321 TCGTTTCTACTCCCTCCTTTCC 59.170 50.000 0.00 0.00 0.00 3.13
3724 4346 2.416972 CGTTTCTACTCCCTCCTTTCCG 60.417 54.545 0.00 0.00 0.00 4.30
3725 4347 2.830321 GTTTCTACTCCCTCCTTTCCGA 59.170 50.000 0.00 0.00 0.00 4.55
3726 4348 3.399952 TTCTACTCCCTCCTTTCCGAT 57.600 47.619 0.00 0.00 0.00 4.18
3727 4349 3.399952 TCTACTCCCTCCTTTCCGATT 57.600 47.619 0.00 0.00 0.00 3.34
3728 4350 3.721021 TCTACTCCCTCCTTTCCGATTT 58.279 45.455 0.00 0.00 0.00 2.17
3729 4351 4.875389 TCTACTCCCTCCTTTCCGATTTA 58.125 43.478 0.00 0.00 0.00 1.40
3730 4352 5.464984 TCTACTCCCTCCTTTCCGATTTAT 58.535 41.667 0.00 0.00 0.00 1.40
3731 4353 6.617538 TCTACTCCCTCCTTTCCGATTTATA 58.382 40.000 0.00 0.00 0.00 0.98
3732 4354 5.810080 ACTCCCTCCTTTCCGATTTATAG 57.190 43.478 0.00 0.00 0.00 1.31
3733 4355 4.593634 ACTCCCTCCTTTCCGATTTATAGG 59.406 45.833 0.00 0.00 0.00 2.57
3734 4356 3.908103 TCCCTCCTTTCCGATTTATAGGG 59.092 47.826 0.00 0.00 43.23 3.53
3735 4357 3.651423 CCCTCCTTTCCGATTTATAGGGT 59.349 47.826 0.00 0.00 38.09 4.34
3736 4358 4.104261 CCCTCCTTTCCGATTTATAGGGTT 59.896 45.833 0.00 0.00 38.09 4.11
3737 4359 5.398695 CCCTCCTTTCCGATTTATAGGGTTT 60.399 44.000 0.00 0.00 38.09 3.27
3738 4360 6.183361 CCCTCCTTTCCGATTTATAGGGTTTA 60.183 42.308 0.00 0.00 38.09 2.01
3739 4361 7.459234 CCTCCTTTCCGATTTATAGGGTTTAT 58.541 38.462 0.00 0.00 0.00 1.40
3740 4362 7.606839 CCTCCTTTCCGATTTATAGGGTTTATC 59.393 40.741 0.00 0.00 0.00 1.75
3741 4363 8.271398 TCCTTTCCGATTTATAGGGTTTATCT 57.729 34.615 0.00 0.00 0.00 1.98
3742 4364 8.720537 TCCTTTCCGATTTATAGGGTTTATCTT 58.279 33.333 0.00 0.00 0.00 2.40
3783 4405 9.434420 TTCATTTTATAAGGCTCAATTTGGTTG 57.566 29.630 0.00 0.00 39.25 3.77
3784 4406 8.592809 TCATTTTATAAGGCTCAATTTGGTTGT 58.407 29.630 0.00 0.00 38.95 3.32
3785 4407 9.218440 CATTTTATAAGGCTCAATTTGGTTGTT 57.782 29.630 0.00 0.00 38.95 2.83
3786 4408 9.791801 ATTTTATAAGGCTCAATTTGGTTGTTT 57.208 25.926 0.00 0.00 38.95 2.83
3787 4409 9.620259 TTTTATAAGGCTCAATTTGGTTGTTTT 57.380 25.926 0.00 0.00 38.95 2.43
3788 4410 8.825667 TTATAAGGCTCAATTTGGTTGTTTTC 57.174 30.769 0.00 0.00 38.95 2.29
3789 4411 4.071961 AGGCTCAATTTGGTTGTTTTCC 57.928 40.909 0.00 0.00 38.95 3.13
3790 4412 3.454082 AGGCTCAATTTGGTTGTTTTCCA 59.546 39.130 0.00 0.00 38.95 3.53
3791 4413 4.102996 AGGCTCAATTTGGTTGTTTTCCAT 59.897 37.500 0.00 0.00 38.95 3.41
3792 4414 4.452114 GGCTCAATTTGGTTGTTTTCCATC 59.548 41.667 0.00 0.00 38.95 3.51
3793 4415 5.055812 GCTCAATTTGGTTGTTTTCCATCA 58.944 37.500 0.00 0.00 38.95 3.07
3794 4416 5.050159 GCTCAATTTGGTTGTTTTCCATCAC 60.050 40.000 0.00 0.00 38.95 3.06
3795 4417 5.982356 TCAATTTGGTTGTTTTCCATCACA 58.018 33.333 0.00 0.00 38.95 3.58
3796 4418 6.590068 TCAATTTGGTTGTTTTCCATCACAT 58.410 32.000 0.00 0.00 38.95 3.21
3797 4419 6.482641 TCAATTTGGTTGTTTTCCATCACATG 59.517 34.615 0.00 0.00 38.95 3.21
3798 4420 5.350504 TTTGGTTGTTTTCCATCACATGT 57.649 34.783 0.00 0.00 34.75 3.21
3799 4421 5.350504 TTGGTTGTTTTCCATCACATGTT 57.649 34.783 0.00 0.00 34.75 2.71
3800 4422 4.942852 TGGTTGTTTTCCATCACATGTTC 58.057 39.130 0.00 0.00 0.00 3.18
3801 4423 4.403752 TGGTTGTTTTCCATCACATGTTCA 59.596 37.500 0.00 0.00 0.00 3.18
3802 4424 4.984161 GGTTGTTTTCCATCACATGTTCAG 59.016 41.667 0.00 0.00 0.00 3.02
3803 4425 5.221224 GGTTGTTTTCCATCACATGTTCAGA 60.221 40.000 0.00 0.00 0.00 3.27
3804 4426 6.449698 GTTGTTTTCCATCACATGTTCAGAT 58.550 36.000 0.00 0.00 0.00 2.90
3805 4427 6.653526 TGTTTTCCATCACATGTTCAGATT 57.346 33.333 0.00 0.00 0.00 2.40
3806 4428 6.680810 TGTTTTCCATCACATGTTCAGATTC 58.319 36.000 0.00 0.00 0.00 2.52
3807 4429 5.902613 TTTCCATCACATGTTCAGATTCC 57.097 39.130 0.00 0.00 0.00 3.01
3808 4430 4.573021 TCCATCACATGTTCAGATTCCA 57.427 40.909 0.00 0.00 0.00 3.53
3809 4431 4.920999 TCCATCACATGTTCAGATTCCAA 58.079 39.130 0.00 0.00 0.00 3.53
3810 4432 4.945543 TCCATCACATGTTCAGATTCCAAG 59.054 41.667 0.00 0.00 0.00 3.61
3811 4433 4.097437 CCATCACATGTTCAGATTCCAAGG 59.903 45.833 0.00 0.00 0.00 3.61
3812 4434 4.371624 TCACATGTTCAGATTCCAAGGT 57.628 40.909 0.00 0.00 0.00 3.50
3813 4435 4.074259 TCACATGTTCAGATTCCAAGGTG 58.926 43.478 0.00 0.00 0.00 4.00
3814 4436 2.821969 ACATGTTCAGATTCCAAGGTGC 59.178 45.455 0.00 0.00 0.00 5.01
3815 4437 2.655090 TGTTCAGATTCCAAGGTGCA 57.345 45.000 0.00 0.00 0.00 4.57
3816 4438 3.159213 TGTTCAGATTCCAAGGTGCAT 57.841 42.857 0.00 0.00 0.00 3.96
3817 4439 3.499338 TGTTCAGATTCCAAGGTGCATT 58.501 40.909 0.00 0.00 0.00 3.56
3818 4440 4.661222 TGTTCAGATTCCAAGGTGCATTA 58.339 39.130 0.00 0.00 0.00 1.90
3819 4441 5.076182 TGTTCAGATTCCAAGGTGCATTAA 58.924 37.500 0.00 0.00 0.00 1.40
3820 4442 5.538053 TGTTCAGATTCCAAGGTGCATTAAA 59.462 36.000 0.00 0.00 0.00 1.52
3821 4443 6.211184 TGTTCAGATTCCAAGGTGCATTAAAT 59.789 34.615 0.00 0.00 0.00 1.40
3822 4444 6.455360 TCAGATTCCAAGGTGCATTAAATC 57.545 37.500 0.00 0.00 0.00 2.17
3823 4445 5.951148 TCAGATTCCAAGGTGCATTAAATCA 59.049 36.000 0.00 0.00 0.00 2.57
3824 4446 6.608405 TCAGATTCCAAGGTGCATTAAATCAT 59.392 34.615 0.00 0.00 0.00 2.45
3825 4447 7.124599 TCAGATTCCAAGGTGCATTAAATCATT 59.875 33.333 0.00 0.00 0.00 2.57
3826 4448 7.223971 CAGATTCCAAGGTGCATTAAATCATTG 59.776 37.037 0.00 0.00 0.00 2.82
3827 4449 4.757594 TCCAAGGTGCATTAAATCATTGC 58.242 39.130 0.00 0.00 36.91 3.56
3828 4450 4.222366 TCCAAGGTGCATTAAATCATTGCA 59.778 37.500 0.00 0.00 43.63 4.08
3829 4451 5.104859 TCCAAGGTGCATTAAATCATTGCAT 60.105 36.000 4.14 0.00 46.90 3.96
3830 4452 5.007234 CCAAGGTGCATTAAATCATTGCATG 59.993 40.000 4.14 0.00 46.90 4.06
3831 4453 4.124238 AGGTGCATTAAATCATTGCATGC 58.876 39.130 11.82 11.82 46.90 4.06
3832 4454 3.872182 GGTGCATTAAATCATTGCATGCA 59.128 39.130 18.46 18.46 46.90 3.96
3833 4455 4.333095 GGTGCATTAAATCATTGCATGCAA 59.667 37.500 33.57 33.57 46.90 4.08
3834 4456 5.498159 GTGCATTAAATCATTGCATGCAAG 58.502 37.500 34.15 25.40 46.90 4.01
3835 4457 5.064198 GTGCATTAAATCATTGCATGCAAGT 59.936 36.000 34.15 21.32 46.90 3.16
3836 4458 6.256104 GTGCATTAAATCATTGCATGCAAGTA 59.744 34.615 34.15 25.25 46.90 2.24
3837 4459 6.256104 TGCATTAAATCATTGCATGCAAGTAC 59.744 34.615 34.15 16.04 40.64 2.73
3838 4460 6.477688 GCATTAAATCATTGCATGCAAGTACT 59.522 34.615 34.15 17.88 39.47 2.73
3839 4461 7.648908 GCATTAAATCATTGCATGCAAGTACTA 59.351 33.333 34.15 19.61 39.47 1.82
3840 4462 9.518906 CATTAAATCATTGCATGCAAGTACTAA 57.481 29.630 34.15 25.16 39.47 2.24
3841 4463 9.740239 ATTAAATCATTGCATGCAAGTACTAAG 57.260 29.630 34.15 18.46 39.47 2.18
3842 4464 7.395190 AAATCATTGCATGCAAGTACTAAGA 57.605 32.000 34.15 22.13 39.47 2.10
3843 4465 7.395190 AATCATTGCATGCAAGTACTAAGAA 57.605 32.000 34.15 11.38 39.47 2.52
3844 4466 6.816134 TCATTGCATGCAAGTACTAAGAAA 57.184 33.333 34.15 10.85 39.47 2.52
3845 4467 7.213216 TCATTGCATGCAAGTACTAAGAAAA 57.787 32.000 34.15 10.64 39.47 2.29
3846 4468 7.656412 TCATTGCATGCAAGTACTAAGAAAAA 58.344 30.769 34.15 10.19 39.47 1.94
3910 4532 9.598517 CAATTAATGCATTGGTAACCATACTTT 57.401 29.630 22.27 0.00 31.53 2.66
3966 4588 9.420966 GCTTTTGCAAACTACAAAAAGTATTTC 57.579 29.630 12.39 0.00 44.07 2.17
3970 4592 9.809096 TTGCAAACTACAAAAAGTATTTCATCA 57.191 25.926 0.00 0.00 37.28 3.07
3971 4593 9.243637 TGCAAACTACAAAAAGTATTTCATCAC 57.756 29.630 0.00 0.00 37.28 3.06
3972 4594 9.463443 GCAAACTACAAAAAGTATTTCATCACT 57.537 29.630 0.00 0.00 37.28 3.41
3976 4598 8.784043 ACTACAAAAAGTATTTCATCACTCACC 58.216 33.333 0.00 0.00 37.28 4.02
3977 4599 7.581213 ACAAAAAGTATTTCATCACTCACCA 57.419 32.000 0.00 0.00 37.28 4.17
3978 4600 8.181904 ACAAAAAGTATTTCATCACTCACCAT 57.818 30.769 0.00 0.00 37.28 3.55
3979 4601 8.299570 ACAAAAAGTATTTCATCACTCACCATC 58.700 33.333 0.00 0.00 37.28 3.51
3980 4602 8.517878 CAAAAAGTATTTCATCACTCACCATCT 58.482 33.333 0.00 0.00 37.28 2.90
3981 4603 9.739276 AAAAAGTATTTCATCACTCACCATCTA 57.261 29.630 0.00 0.00 37.28 1.98
3982 4604 9.911788 AAAAGTATTTCATCACTCACCATCTAT 57.088 29.630 0.00 0.00 37.28 1.98
3983 4605 9.553064 AAAGTATTTCATCACTCACCATCTATC 57.447 33.333 0.00 0.00 27.08 2.08
3984 4606 8.489676 AGTATTTCATCACTCACCATCTATCT 57.510 34.615 0.00 0.00 0.00 1.98
3985 4607 8.932610 AGTATTTCATCACTCACCATCTATCTT 58.067 33.333 0.00 0.00 0.00 2.40
3986 4608 8.986847 GTATTTCATCACTCACCATCTATCTTG 58.013 37.037 0.00 0.00 0.00 3.02
3987 4609 5.541953 TCATCACTCACCATCTATCTTGG 57.458 43.478 0.00 0.00 40.26 3.61
3989 4611 5.426509 TCATCACTCACCATCTATCTTGGTT 59.573 40.000 0.00 0.00 45.19 3.67
3990 4612 5.089970 TCACTCACCATCTATCTTGGTTG 57.910 43.478 0.00 0.00 45.19 3.77
3991 4613 4.080919 TCACTCACCATCTATCTTGGTTGG 60.081 45.833 0.00 0.00 45.19 3.77
3992 4614 3.846588 ACTCACCATCTATCTTGGTTGGT 59.153 43.478 0.00 0.00 45.19 3.67
3995 4617 4.494091 ACCATCTATCTTGGTTGGTGAG 57.506 45.455 0.00 0.00 45.19 3.51
3996 4618 4.104086 ACCATCTATCTTGGTTGGTGAGA 58.896 43.478 0.00 0.00 45.19 3.27
3997 4619 4.536090 ACCATCTATCTTGGTTGGTGAGAA 59.464 41.667 0.00 0.00 45.19 2.87
3998 4620 5.192522 ACCATCTATCTTGGTTGGTGAGAAT 59.807 40.000 0.00 0.00 45.19 2.40
3999 4621 6.125029 CCATCTATCTTGGTTGGTGAGAATT 58.875 40.000 0.00 0.00 0.00 2.17
4000 4622 6.604795 CCATCTATCTTGGTTGGTGAGAATTT 59.395 38.462 0.00 0.00 0.00 1.82
4001 4623 7.123247 CCATCTATCTTGGTTGGTGAGAATTTT 59.877 37.037 0.00 0.00 0.00 1.82
4002 4624 8.526147 CATCTATCTTGGTTGGTGAGAATTTTT 58.474 33.333 0.00 0.00 0.00 1.94
4025 4647 9.813446 TTTTTATTAAGCCTTGTAAACCGAAAA 57.187 25.926 0.00 0.00 0.00 2.29
4026 4648 9.465985 TTTTATTAAGCCTTGTAAACCGAAAAG 57.534 29.630 0.00 0.00 0.00 2.27
4028 4650 3.217681 AGCCTTGTAAACCGAAAAGGA 57.782 42.857 4.51 0.00 45.00 3.36
4029 4651 3.146847 AGCCTTGTAAACCGAAAAGGAG 58.853 45.455 4.51 0.00 45.00 3.69
4030 4652 2.228103 GCCTTGTAAACCGAAAAGGAGG 59.772 50.000 4.51 0.00 45.00 4.30
4031 4653 2.817844 CCTTGTAAACCGAAAAGGAGGG 59.182 50.000 0.00 0.00 45.00 4.30
4032 4654 3.497227 CCTTGTAAACCGAAAAGGAGGGA 60.497 47.826 0.00 0.00 45.00 4.20
4033 4655 3.412237 TGTAAACCGAAAAGGAGGGAG 57.588 47.619 0.00 0.00 45.00 4.30
4069 4691 2.182825 CACATTCACGCTACCTCGTAC 58.817 52.381 0.00 0.00 41.21 3.67
4070 4692 2.089980 ACATTCACGCTACCTCGTACT 58.910 47.619 0.00 0.00 41.21 2.73
4071 4693 3.064408 CACATTCACGCTACCTCGTACTA 59.936 47.826 0.00 0.00 41.21 1.82
4086 4708 8.522542 ACCTCGTACTATGAGATTTTAAGACT 57.477 34.615 6.84 0.00 33.07 3.24
4098 4720 8.896744 TGAGATTTTAAGACTTCTAATGCATGG 58.103 33.333 0.00 0.00 0.00 3.66
4099 4721 9.113838 GAGATTTTAAGACTTCTAATGCATGGA 57.886 33.333 0.00 0.00 0.00 3.41
4100 4722 9.638176 AGATTTTAAGACTTCTAATGCATGGAT 57.362 29.630 0.00 0.00 0.00 3.41
4115 4737 3.973657 CATGGATGCTTAAATGAGGTGC 58.026 45.455 0.00 0.00 0.00 5.01
4116 4738 3.370840 TGGATGCTTAAATGAGGTGCT 57.629 42.857 0.00 0.00 0.00 4.40
4117 4739 4.502105 TGGATGCTTAAATGAGGTGCTA 57.498 40.909 0.00 0.00 0.00 3.49
4118 4740 4.854173 TGGATGCTTAAATGAGGTGCTAA 58.146 39.130 0.00 0.00 0.00 3.09
4119 4741 4.883585 TGGATGCTTAAATGAGGTGCTAAG 59.116 41.667 0.00 0.00 0.00 2.18
4120 4742 4.884164 GGATGCTTAAATGAGGTGCTAAGT 59.116 41.667 0.00 0.00 0.00 2.24
4121 4743 5.220931 GGATGCTTAAATGAGGTGCTAAGTG 60.221 44.000 0.00 0.00 0.00 3.16
4122 4744 3.440173 TGCTTAAATGAGGTGCTAAGTGC 59.560 43.478 0.00 0.00 43.25 4.40
4164 4811 0.833949 CTCCCCAACTAAGCTCCCTC 59.166 60.000 0.00 0.00 0.00 4.30
4198 4845 6.006449 AGGCATAGACTCAGATTTGTGTTTT 58.994 36.000 0.00 0.00 31.58 2.43
4209 4856 8.611654 TCAGATTTGTGTTTTTACCTAGGTAC 57.388 34.615 21.65 13.11 0.00 3.34
4212 4859 6.940831 TTTGTGTTTTTACCTAGGTACACC 57.059 37.500 29.96 18.61 34.68 4.16
4247 4894 4.637483 TTCTTCCTGAAACTGCAAAGTG 57.363 40.909 0.00 0.00 0.00 3.16
4291 4938 3.838244 AGGCTTGTGCTCCGATTTATA 57.162 42.857 0.00 0.00 39.59 0.98
4305 4952 8.321716 GCTCCGATTTATATATAAAGCAACGAG 58.678 37.037 25.32 23.80 38.24 4.18
4332 4979 3.198409 TCATGCAACTCAACACACTCT 57.802 42.857 0.00 0.00 0.00 3.24
4337 4984 2.726760 GCAACTCAACACACTCTACTCG 59.273 50.000 0.00 0.00 0.00 4.18
4343 4990 1.245732 ACACACTCTACTCGACACCC 58.754 55.000 0.00 0.00 0.00 4.61
4348 4995 1.254026 CTCTACTCGACACCCCAACA 58.746 55.000 0.00 0.00 0.00 3.33
4361 5008 1.024271 CCCAACACACACACTCAAGG 58.976 55.000 0.00 0.00 0.00 3.61
4365 5012 2.877786 CAACACACACACTCAAGGCATA 59.122 45.455 0.00 0.00 0.00 3.14
4374 5021 5.125356 CACACTCAAGGCATAATACATGGA 58.875 41.667 0.00 0.00 0.00 3.41
4375 5022 5.008019 CACACTCAAGGCATAATACATGGAC 59.992 44.000 0.00 0.00 0.00 4.02
4400 5047 6.645415 CGATAAGAACAGGTACACAAAAGAGT 59.355 38.462 0.00 0.00 0.00 3.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 9.479549 ACAAGATCAAAATATTACAGGTTCCAT 57.520 29.630 0.00 0.00 0.00 3.41
128 129 8.927411 TCCACATCTAGTAAAATGATGAGATCA 58.073 33.333 8.86 0.00 44.55 2.92
204 253 2.468831 TGCGGAAACAAAAATCAGCAC 58.531 42.857 0.00 0.00 40.87 4.40
205 254 2.879002 TGCGGAAACAAAAATCAGCA 57.121 40.000 0.00 0.00 42.93 4.41
206 255 4.528531 TTTTGCGGAAACAAAAATCAGC 57.471 36.364 0.00 0.00 44.32 4.26
226 275 6.127196 TGACCTAAAAATCAGTGCACCTTTTT 60.127 34.615 25.49 25.49 35.58 1.94
227 276 5.362430 TGACCTAAAAATCAGTGCACCTTTT 59.638 36.000 14.63 15.62 0.00 2.27
228 277 4.892934 TGACCTAAAAATCAGTGCACCTTT 59.107 37.500 14.63 8.47 0.00 3.11
229 278 4.278419 GTGACCTAAAAATCAGTGCACCTT 59.722 41.667 14.63 1.83 0.00 3.50
230 279 3.821033 GTGACCTAAAAATCAGTGCACCT 59.179 43.478 14.63 0.00 0.00 4.00
231 280 3.568007 TGTGACCTAAAAATCAGTGCACC 59.432 43.478 14.63 0.00 0.00 5.01
232 281 4.275936 AGTGTGACCTAAAAATCAGTGCAC 59.724 41.667 9.40 9.40 0.00 4.57
233 282 4.460263 AGTGTGACCTAAAAATCAGTGCA 58.540 39.130 0.00 0.00 0.00 4.57
252 301 3.383505 TCACTGACCGGTTGGATATAGTG 59.616 47.826 9.42 14.26 39.21 2.74
431 480 5.622914 CGATGCAGTTGAGGAATGGATTTTT 60.623 40.000 0.00 0.00 0.00 1.94
432 481 4.142315 CGATGCAGTTGAGGAATGGATTTT 60.142 41.667 0.00 0.00 0.00 1.82
433 482 3.379372 CGATGCAGTTGAGGAATGGATTT 59.621 43.478 0.00 0.00 0.00 2.17
434 483 2.947652 CGATGCAGTTGAGGAATGGATT 59.052 45.455 0.00 0.00 0.00 3.01
435 484 2.569059 CGATGCAGTTGAGGAATGGAT 58.431 47.619 0.00 0.00 0.00 3.41
436 485 1.407299 CCGATGCAGTTGAGGAATGGA 60.407 52.381 0.00 0.00 0.00 3.41
437 486 1.019673 CCGATGCAGTTGAGGAATGG 58.980 55.000 0.00 0.00 0.00 3.16
438 487 1.019673 CCCGATGCAGTTGAGGAATG 58.980 55.000 0.00 0.00 0.00 2.67
439 488 0.107017 CCCCGATGCAGTTGAGGAAT 60.107 55.000 0.00 0.00 0.00 3.01
563 626 2.546795 GCGAGAGAGAGAGAGAGAGAGG 60.547 59.091 0.00 0.00 0.00 3.69
565 628 1.067060 CGCGAGAGAGAGAGAGAGAGA 59.933 57.143 0.00 0.00 0.00 3.10
566 629 1.491670 CGCGAGAGAGAGAGAGAGAG 58.508 60.000 0.00 0.00 0.00 3.20
567 630 0.104120 CCGCGAGAGAGAGAGAGAGA 59.896 60.000 8.23 0.00 0.00 3.10
568 631 0.880278 CCCGCGAGAGAGAGAGAGAG 60.880 65.000 8.23 0.00 0.00 3.20
569 632 1.145156 CCCGCGAGAGAGAGAGAGA 59.855 63.158 8.23 0.00 0.00 3.10
570 633 1.145156 TCCCGCGAGAGAGAGAGAG 59.855 63.158 8.23 0.00 0.00 3.20
571 634 1.153329 GTCCCGCGAGAGAGAGAGA 60.153 63.158 8.23 0.00 0.00 3.10
572 635 2.530497 CGTCCCGCGAGAGAGAGAG 61.530 68.421 8.23 0.00 44.77 3.20
573 636 2.511829 CGTCCCGCGAGAGAGAGA 60.512 66.667 8.23 0.00 44.77 3.10
574 637 3.578272 CCGTCCCGCGAGAGAGAG 61.578 72.222 8.23 0.00 44.77 3.20
655 718 0.179215 GCCACATCTCGCGTCTTTTG 60.179 55.000 5.77 0.79 0.00 2.44
656 719 1.298859 GGCCACATCTCGCGTCTTTT 61.299 55.000 5.77 0.00 0.00 2.27
659 722 4.498520 CGGCCACATCTCGCGTCT 62.499 66.667 5.77 0.00 0.00 4.18
779 842 3.386237 AGACTCTGCTCACCGCCC 61.386 66.667 0.00 0.00 38.05 6.13
807 870 2.037251 TGGGAGACGAGGAACTTTTGAG 59.963 50.000 0.00 0.00 41.55 3.02
841 914 7.118390 CACGGATTCAACTTATTCAGAGTTTCT 59.882 37.037 0.00 0.00 35.26 2.52
842 915 7.237173 CACGGATTCAACTTATTCAGAGTTTC 58.763 38.462 0.00 0.00 35.26 2.78
901 975 5.476599 TCAATTTAAGCTGTATGCCACTGTT 59.523 36.000 0.00 0.00 44.23 3.16
902 976 5.009631 TCAATTTAAGCTGTATGCCACTGT 58.990 37.500 0.00 0.00 44.23 3.55
903 977 5.565592 TCAATTTAAGCTGTATGCCACTG 57.434 39.130 0.00 0.00 44.23 3.66
941 1015 5.416952 GCAGCAGCATCCCTACAATAATAAT 59.583 40.000 0.00 0.00 41.58 1.28
944 1018 3.152341 GCAGCAGCATCCCTACAATAAT 58.848 45.455 0.00 0.00 41.58 1.28
945 1019 2.173356 AGCAGCAGCATCCCTACAATAA 59.827 45.455 3.17 0.00 45.49 1.40
946 1020 1.770658 AGCAGCAGCATCCCTACAATA 59.229 47.619 3.17 0.00 45.49 1.90
987 1070 6.983890 TGATTGCATCCATTTCATCAATCAAG 59.016 34.615 11.55 0.00 43.56 3.02
1000 1083 0.757935 GGGGCTGTGATTGCATCCAT 60.758 55.000 0.00 0.00 0.00 3.41
1009 1092 2.610438 AGAAACATTGGGGCTGTGAT 57.390 45.000 0.00 0.00 0.00 3.06
1062 1150 1.753073 ACAAAAGAAAGCAGCAGCACT 59.247 42.857 3.17 0.00 45.49 4.40
1063 1151 2.122564 GACAAAAGAAAGCAGCAGCAC 58.877 47.619 3.17 0.00 45.49 4.40
1081 1170 1.133025 CAGTTCATCGCCAATTGGGAC 59.867 52.381 25.73 9.24 38.94 4.46
1088 1177 0.327924 ATCACCCAGTTCATCGCCAA 59.672 50.000 0.00 0.00 0.00 4.52
1101 1190 4.022155 GGAAACTATCGTAGGAGATCACCC 60.022 50.000 5.46 0.61 32.39 4.61
1103 1192 5.067413 TGTGGAAACTATCGTAGGAGATCAC 59.933 44.000 0.00 0.00 32.39 3.06
1154 1243 3.315949 TGGCGACCACCCCTGTAC 61.316 66.667 0.00 0.00 0.00 2.90
1219 1489 1.613437 CTGGTTAAAACACCCCTGCTG 59.387 52.381 0.00 0.00 35.73 4.41
1227 1497 3.477530 AGAGAGCCACTGGTTAAAACAC 58.522 45.455 0.00 0.00 0.00 3.32
1244 1514 3.685139 AAAAGAATGCCGTGAGAGAGA 57.315 42.857 0.00 0.00 0.00 3.10
1265 1535 8.675504 TGTTCATTTTAAAACACCGAGAGTAAA 58.324 29.630 1.97 0.00 30.73 2.01
1274 1544 5.069914 AGACCCCTGTTCATTTTAAAACACC 59.930 40.000 1.97 0.00 32.28 4.16
1297 1567 4.281688 TCTTCCTCCTTGGCATTTTCAAAG 59.718 41.667 0.00 0.00 35.26 2.77
1405 1676 3.558033 ACATGATGCTGGCAATGTGATA 58.442 40.909 10.79 0.00 0.00 2.15
1418 1689 2.416547 AGCTACGTGAACAACATGATGC 59.583 45.455 0.00 0.00 38.72 3.91
1585 1872 3.708403 TGTCTGCTCAGTTCCATCAAT 57.292 42.857 0.00 0.00 0.00 2.57
1613 1900 2.164827 TCGTAGAGCTTACAAATGGCGA 59.835 45.455 0.00 0.00 0.00 5.54
1685 1972 1.002888 CACACTTGATGTCCAGGAGCT 59.997 52.381 0.00 0.00 40.64 4.09
1723 2010 2.376518 ACCTTGTGAACCATGTCAGGAT 59.623 45.455 0.00 0.00 0.00 3.24
1864 2151 2.168521 CCTGTTCCATGTCATAGTCGGT 59.831 50.000 0.00 0.00 0.00 4.69
2035 2322 1.200716 CTTGTTGCTGATCCGTGCATT 59.799 47.619 6.08 0.00 39.07 3.56
2209 2496 4.027458 CACGACAAATTTGCACAAGTTCAG 60.027 41.667 18.12 5.79 0.00 3.02
2265 2552 9.120538 CAGTAAAGTAAGCACCCAATTGTATAT 57.879 33.333 4.43 0.00 0.00 0.86
2268 2555 5.182380 GCAGTAAAGTAAGCACCCAATTGTA 59.818 40.000 4.43 0.00 0.00 2.41
2273 2560 3.216187 TGCAGTAAAGTAAGCACCCAA 57.784 42.857 0.00 0.00 31.05 4.12
2491 3070 1.102978 CGGAACCCCAAAATGGCTAG 58.897 55.000 0.00 0.00 35.79 3.42
2513 3092 3.256383 TCAGAGTGGGACATGCAAAAATG 59.744 43.478 0.00 0.00 44.52 2.32
2571 3150 0.611714 AGGTACCTTAACTGCGGGTG 59.388 55.000 9.21 0.00 34.86 4.61
2575 3155 2.351726 GCATCAAGGTACCTTAACTGCG 59.648 50.000 26.66 13.41 34.50 5.18
2576 3156 3.610911 AGCATCAAGGTACCTTAACTGC 58.389 45.455 29.92 29.92 35.75 4.40
2580 3160 5.249780 TCCAAAGCATCAAGGTACCTTAA 57.750 39.130 26.66 14.15 34.50 1.85
2591 3171 2.166870 GCCATCACAATCCAAAGCATCA 59.833 45.455 0.00 0.00 0.00 3.07
2747 3327 5.414765 GTGTGGAAATAAAAAGAGGGACGAT 59.585 40.000 0.00 0.00 0.00 3.73
2750 3330 6.183360 TGTTGTGTGGAAATAAAAAGAGGGAC 60.183 38.462 0.00 0.00 0.00 4.46
2807 3387 5.995446 AGGTTGATTCTCAGGAAATACTCC 58.005 41.667 0.00 0.00 45.81 3.85
2808 3388 6.883744 AGAGGTTGATTCTCAGGAAATACTC 58.116 40.000 0.00 0.00 34.90 2.59
2809 3389 6.671779 AGAGAGGTTGATTCTCAGGAAATACT 59.328 38.462 5.20 0.00 42.79 2.12
2810 3390 6.883744 AGAGAGGTTGATTCTCAGGAAATAC 58.116 40.000 5.20 0.00 42.79 1.89
2811 3391 6.669591 TGAGAGAGGTTGATTCTCAGGAAATA 59.330 38.462 5.20 0.00 41.62 1.40
2812 3392 5.486775 TGAGAGAGGTTGATTCTCAGGAAAT 59.513 40.000 5.20 0.00 41.62 2.17
2813 3393 4.840680 TGAGAGAGGTTGATTCTCAGGAAA 59.159 41.667 5.20 0.00 41.62 3.13
2937 3517 1.480954 GGCCTCCGAACAGACTCAATA 59.519 52.381 0.00 0.00 0.00 1.90
2942 3522 2.120718 AGGGCCTCCGAACAGACT 59.879 61.111 0.00 0.00 38.33 3.24
3036 3616 7.610865 ACACATCCTTGTCAAAGAAAAAGAAA 58.389 30.769 0.00 0.00 35.19 2.52
3037 3617 7.169158 ACACATCCTTGTCAAAGAAAAAGAA 57.831 32.000 0.00 0.00 35.19 2.52
3038 3618 6.183360 GGACACATCCTTGTCAAAGAAAAAGA 60.183 38.462 5.67 0.00 46.68 2.52
3059 3639 2.585900 AGGTGATACAGGGTAGAGGACA 59.414 50.000 0.00 0.00 0.00 4.02
3062 3642 4.141688 GGAAAAGGTGATACAGGGTAGAGG 60.142 50.000 0.00 0.00 0.00 3.69
3063 3643 4.141688 GGGAAAAGGTGATACAGGGTAGAG 60.142 50.000 0.00 0.00 0.00 2.43
3064 3644 3.778629 GGGAAAAGGTGATACAGGGTAGA 59.221 47.826 0.00 0.00 0.00 2.59
3065 3645 3.521937 TGGGAAAAGGTGATACAGGGTAG 59.478 47.826 0.00 0.00 0.00 3.18
3066 3646 3.264964 GTGGGAAAAGGTGATACAGGGTA 59.735 47.826 0.00 0.00 0.00 3.69
3067 3647 2.041216 GTGGGAAAAGGTGATACAGGGT 59.959 50.000 0.00 0.00 0.00 4.34
3068 3648 2.041081 TGTGGGAAAAGGTGATACAGGG 59.959 50.000 0.00 0.00 0.00 4.45
3071 3651 2.224917 GGGTGTGGGAAAAGGTGATACA 60.225 50.000 0.00 0.00 0.00 2.29
3072 3652 2.224917 TGGGTGTGGGAAAAGGTGATAC 60.225 50.000 0.00 0.00 0.00 2.24
3085 3671 1.530655 GGGTGAGGTTTGGGTGTGG 60.531 63.158 0.00 0.00 0.00 4.17
3104 3690 8.928733 AGTAAAAAGCATTATCACAGCATTTTG 58.071 29.630 9.07 0.00 38.88 2.44
3108 3694 7.161773 ACAGTAAAAAGCATTATCACAGCAT 57.838 32.000 0.00 0.00 0.00 3.79
3199 3786 3.017442 CTGTACGAGATCACCAAGGAGA 58.983 50.000 0.00 0.00 0.00 3.71
3287 3874 9.912634 ATCTTCAAACAACGTATCATCATTTTT 57.087 25.926 0.00 0.00 0.00 1.94
3301 3888 6.602179 TGATGATGACGAATCTTCAAACAAC 58.398 36.000 14.42 0.00 43.09 3.32
3337 3924 2.782222 ATCGTCCCCATCCGTGTCG 61.782 63.158 0.00 0.00 0.00 4.35
3341 3928 0.966920 GTATCATCGTCCCCATCCGT 59.033 55.000 0.00 0.00 0.00 4.69
3343 3930 0.966920 ACGTATCATCGTCCCCATCC 59.033 55.000 0.00 0.00 40.04 3.51
3373 3960 4.261825 GCTAGCACTACGGATTCTGAAGAT 60.262 45.833 10.63 0.00 0.00 2.40
3376 3963 2.758423 TGCTAGCACTACGGATTCTGAA 59.242 45.455 14.93 0.00 0.00 3.02
3381 3968 3.384789 TCATTCTGCTAGCACTACGGATT 59.615 43.478 14.93 2.96 0.00 3.01
3471 4071 4.395854 GGACAACATACAGATTGCATCACA 59.604 41.667 0.00 0.00 0.00 3.58
3474 4074 3.316308 GGGGACAACATACAGATTGCATC 59.684 47.826 0.00 0.00 0.00 3.91
3476 4076 2.308570 AGGGGACAACATACAGATTGCA 59.691 45.455 0.00 0.00 0.00 4.08
3477 4077 2.945668 GAGGGGACAACATACAGATTGC 59.054 50.000 0.00 0.00 0.00 3.56
3478 4078 4.494091 AGAGGGGACAACATACAGATTG 57.506 45.455 0.00 0.00 0.00 2.67
3479 4079 5.256474 CAAAGAGGGGACAACATACAGATT 58.744 41.667 0.00 0.00 0.00 2.40
3480 4080 4.848357 CAAAGAGGGGACAACATACAGAT 58.152 43.478 0.00 0.00 0.00 2.90
3481 4081 3.559171 GCAAAGAGGGGACAACATACAGA 60.559 47.826 0.00 0.00 0.00 3.41
3482 4082 2.749621 GCAAAGAGGGGACAACATACAG 59.250 50.000 0.00 0.00 0.00 2.74
3484 4084 3.073274 AGCAAAGAGGGGACAACATAC 57.927 47.619 0.00 0.00 0.00 2.39
3485 4085 3.844211 ACTAGCAAAGAGGGGACAACATA 59.156 43.478 0.00 0.00 0.00 2.29
3486 4086 2.644798 ACTAGCAAAGAGGGGACAACAT 59.355 45.455 0.00 0.00 0.00 2.71
3487 4087 2.054799 ACTAGCAAAGAGGGGACAACA 58.945 47.619 0.00 0.00 0.00 3.33
3488 4088 2.038557 TCACTAGCAAAGAGGGGACAAC 59.961 50.000 0.00 0.00 0.00 3.32
3489 4089 2.334977 TCACTAGCAAAGAGGGGACAA 58.665 47.619 0.00 0.00 0.00 3.18
3500 4101 7.701539 ATTGTTGGTTATGAATCACTAGCAA 57.298 32.000 6.87 6.87 31.09 3.91
3512 4113 9.722056 GAAAATGCTCTAGTATTGTTGGTTATG 57.278 33.333 0.00 0.00 30.82 1.90
3528 4129 6.650807 TGATAAACGAAGTCTGAAAATGCTCT 59.349 34.615 0.00 0.00 45.00 4.09
3557 4158 4.200838 TGAACAGCGATGTCAAATCCTA 57.799 40.909 6.84 0.00 0.00 2.94
3597 4213 7.046033 AGAAAATAACTCCGACCGAACATTAT 58.954 34.615 0.00 0.00 0.00 1.28
3627 4243 8.830580 CCGATTACATATGAGTGACAAAGAAAT 58.169 33.333 10.38 0.00 0.00 2.17
3629 4245 6.761242 CCCGATTACATATGAGTGACAAAGAA 59.239 38.462 10.38 0.00 0.00 2.52
3658 4278 7.393234 ACAGCATCTAGAAACTCTATAGGCTAG 59.607 40.741 7.59 4.55 39.88 3.42
3709 4331 5.778750 CCTATAAATCGGAAAGGAGGGAGTA 59.221 44.000 0.00 0.00 0.00 2.59
3710 4332 4.593634 CCTATAAATCGGAAAGGAGGGAGT 59.406 45.833 0.00 0.00 0.00 3.85
3711 4333 4.020128 CCCTATAAATCGGAAAGGAGGGAG 60.020 50.000 8.81 0.00 44.48 4.30
3712 4334 3.908103 CCCTATAAATCGGAAAGGAGGGA 59.092 47.826 8.81 0.00 44.48 4.20
3713 4335 3.651423 ACCCTATAAATCGGAAAGGAGGG 59.349 47.826 11.64 11.64 46.66 4.30
3714 4336 4.976540 ACCCTATAAATCGGAAAGGAGG 57.023 45.455 0.00 0.00 0.00 4.30
3715 4337 8.376270 AGATAAACCCTATAAATCGGAAAGGAG 58.624 37.037 0.00 0.00 0.00 3.69
3716 4338 8.271398 AGATAAACCCTATAAATCGGAAAGGA 57.729 34.615 0.00 0.00 0.00 3.36
3717 4339 8.919777 AAGATAAACCCTATAAATCGGAAAGG 57.080 34.615 0.00 0.00 0.00 3.11
3757 4379 9.434420 CAACCAAATTGAGCCTTATAAAATGAA 57.566 29.630 0.00 0.00 41.23 2.57
3758 4380 8.592809 ACAACCAAATTGAGCCTTATAAAATGA 58.407 29.630 0.00 0.00 41.23 2.57
3759 4381 8.776376 ACAACCAAATTGAGCCTTATAAAATG 57.224 30.769 0.00 0.00 41.23 2.32
3760 4382 9.791801 AAACAACCAAATTGAGCCTTATAAAAT 57.208 25.926 0.00 0.00 41.23 1.82
3761 4383 9.620259 AAAACAACCAAATTGAGCCTTATAAAA 57.380 25.926 0.00 0.00 41.23 1.52
3762 4384 9.267084 GAAAACAACCAAATTGAGCCTTATAAA 57.733 29.630 0.00 0.00 41.23 1.40
3763 4385 7.875554 GGAAAACAACCAAATTGAGCCTTATAA 59.124 33.333 0.00 0.00 41.23 0.98
3764 4386 7.015682 TGGAAAACAACCAAATTGAGCCTTATA 59.984 33.333 0.00 0.00 41.23 0.98
3765 4387 6.183361 TGGAAAACAACCAAATTGAGCCTTAT 60.183 34.615 0.00 0.00 41.23 1.73
3766 4388 5.129485 TGGAAAACAACCAAATTGAGCCTTA 59.871 36.000 0.00 0.00 41.23 2.69
3767 4389 4.080638 TGGAAAACAACCAAATTGAGCCTT 60.081 37.500 0.00 0.00 41.23 4.35
3768 4390 3.454082 TGGAAAACAACCAAATTGAGCCT 59.546 39.130 0.00 0.00 41.23 4.58
3769 4391 3.802866 TGGAAAACAACCAAATTGAGCC 58.197 40.909 0.00 0.00 41.23 4.70
3770 4392 5.050159 GTGATGGAAAACAACCAAATTGAGC 60.050 40.000 0.00 0.00 41.23 4.26
3771 4393 6.047870 TGTGATGGAAAACAACCAAATTGAG 58.952 36.000 0.00 0.00 41.23 3.02
3772 4394 5.982356 TGTGATGGAAAACAACCAAATTGA 58.018 33.333 0.00 0.00 41.23 2.57
3773 4395 6.260493 ACATGTGATGGAAAACAACCAAATTG 59.740 34.615 0.00 0.00 40.93 2.32
3774 4396 6.355747 ACATGTGATGGAAAACAACCAAATT 58.644 32.000 0.00 0.00 40.93 1.82
3775 4397 5.927819 ACATGTGATGGAAAACAACCAAAT 58.072 33.333 0.00 0.00 40.93 2.32
3776 4398 5.350504 ACATGTGATGGAAAACAACCAAA 57.649 34.783 0.00 0.00 40.93 3.28
3777 4399 5.105187 TGAACATGTGATGGAAAACAACCAA 60.105 36.000 0.00 0.00 40.93 3.67
3778 4400 4.403752 TGAACATGTGATGGAAAACAACCA 59.596 37.500 0.00 0.00 41.83 3.67
3779 4401 4.942852 TGAACATGTGATGGAAAACAACC 58.057 39.130 0.00 0.00 33.60 3.77
3780 4402 5.830912 TCTGAACATGTGATGGAAAACAAC 58.169 37.500 0.00 0.00 33.60 3.32
3781 4403 6.653526 ATCTGAACATGTGATGGAAAACAA 57.346 33.333 0.00 0.00 33.60 2.83
3782 4404 6.294675 GGAATCTGAACATGTGATGGAAAACA 60.295 38.462 0.00 0.00 33.60 2.83
3783 4405 6.095377 GGAATCTGAACATGTGATGGAAAAC 58.905 40.000 0.00 0.00 33.60 2.43
3784 4406 5.774184 TGGAATCTGAACATGTGATGGAAAA 59.226 36.000 0.00 0.00 33.60 2.29
3785 4407 5.323581 TGGAATCTGAACATGTGATGGAAA 58.676 37.500 0.00 0.00 33.60 3.13
3786 4408 4.920999 TGGAATCTGAACATGTGATGGAA 58.079 39.130 0.00 0.00 33.60 3.53
3787 4409 4.573021 TGGAATCTGAACATGTGATGGA 57.427 40.909 0.00 0.00 33.60 3.41
3788 4410 4.097437 CCTTGGAATCTGAACATGTGATGG 59.903 45.833 0.00 0.00 33.60 3.51
3789 4411 4.703575 ACCTTGGAATCTGAACATGTGATG 59.296 41.667 0.00 0.00 0.00 3.07
3790 4412 4.703575 CACCTTGGAATCTGAACATGTGAT 59.296 41.667 0.00 0.00 0.00 3.06
3791 4413 4.074259 CACCTTGGAATCTGAACATGTGA 58.926 43.478 0.00 0.00 0.00 3.58
3792 4414 3.366679 GCACCTTGGAATCTGAACATGTG 60.367 47.826 0.00 0.00 0.00 3.21
3793 4415 2.821969 GCACCTTGGAATCTGAACATGT 59.178 45.455 0.00 0.00 0.00 3.21
3794 4416 2.821378 TGCACCTTGGAATCTGAACATG 59.179 45.455 0.00 0.00 0.00 3.21
3795 4417 3.159213 TGCACCTTGGAATCTGAACAT 57.841 42.857 0.00 0.00 0.00 2.71
3796 4418 2.655090 TGCACCTTGGAATCTGAACA 57.345 45.000 0.00 0.00 0.00 3.18
3797 4419 5.643379 TTAATGCACCTTGGAATCTGAAC 57.357 39.130 0.00 0.00 0.00 3.18
3798 4420 6.436847 TGATTTAATGCACCTTGGAATCTGAA 59.563 34.615 0.00 0.00 0.00 3.02
3799 4421 5.951148 TGATTTAATGCACCTTGGAATCTGA 59.049 36.000 0.00 0.00 0.00 3.27
3800 4422 6.211587 TGATTTAATGCACCTTGGAATCTG 57.788 37.500 0.00 0.00 0.00 2.90
3801 4423 7.270047 CAATGATTTAATGCACCTTGGAATCT 58.730 34.615 0.00 0.00 0.00 2.40
3802 4424 6.018507 GCAATGATTTAATGCACCTTGGAATC 60.019 38.462 0.00 0.00 39.81 2.52
3803 4425 5.818857 GCAATGATTTAATGCACCTTGGAAT 59.181 36.000 0.00 0.00 39.81 3.01
3804 4426 5.177326 GCAATGATTTAATGCACCTTGGAA 58.823 37.500 0.00 0.00 39.81 3.53
3805 4427 4.222366 TGCAATGATTTAATGCACCTTGGA 59.778 37.500 0.00 0.00 44.52 3.53
3806 4428 4.505808 TGCAATGATTTAATGCACCTTGG 58.494 39.130 0.00 0.00 44.52 3.61
3845 4467 8.614346 GCATAAATTACATGCATTGGTCAATTT 58.386 29.630 16.27 7.43 46.47 1.82
3846 4468 8.145316 GCATAAATTACATGCATTGGTCAATT 57.855 30.769 16.27 0.00 46.47 2.32
3847 4469 7.718272 GCATAAATTACATGCATTGGTCAAT 57.282 32.000 16.27 0.00 46.47 2.57
3883 4505 7.209475 AGTATGGTTACCAATGCATTAATTGC 58.791 34.615 12.53 2.99 44.23 3.56
3884 4506 9.598517 AAAGTATGGTTACCAATGCATTAATTG 57.401 29.630 12.53 0.61 36.95 2.32
3927 4549 6.147656 AGTTTGCAAAAGCACCTAATTAATGC 59.852 34.615 14.67 11.70 39.74 3.56
3928 4550 7.656707 AGTTTGCAAAAGCACCTAATTAATG 57.343 32.000 14.67 0.00 0.00 1.90
3929 4551 8.364142 TGTAGTTTGCAAAAGCACCTAATTAAT 58.636 29.630 14.67 0.00 0.00 1.40
3930 4552 7.717568 TGTAGTTTGCAAAAGCACCTAATTAA 58.282 30.769 14.67 0.00 0.00 1.40
3931 4553 7.278461 TGTAGTTTGCAAAAGCACCTAATTA 57.722 32.000 14.67 0.00 0.00 1.40
3932 4554 6.155475 TGTAGTTTGCAAAAGCACCTAATT 57.845 33.333 14.67 0.00 0.00 1.40
3933 4555 5.782893 TGTAGTTTGCAAAAGCACCTAAT 57.217 34.783 14.67 0.00 0.00 1.73
3934 4556 5.584253 TTGTAGTTTGCAAAAGCACCTAA 57.416 34.783 14.67 0.82 0.00 2.69
3935 4557 5.584253 TTTGTAGTTTGCAAAAGCACCTA 57.416 34.783 14.67 7.87 33.51 3.08
3936 4558 4.464069 TTTGTAGTTTGCAAAAGCACCT 57.536 36.364 14.67 8.91 33.51 4.00
3937 4559 5.121611 ACTTTTTGTAGTTTGCAAAAGCACC 59.878 36.000 14.67 0.55 43.70 5.01
3938 4560 6.164408 ACTTTTTGTAGTTTGCAAAAGCAC 57.836 33.333 14.67 12.12 43.70 4.40
3939 4561 8.485976 AATACTTTTTGTAGTTTGCAAAAGCA 57.514 26.923 14.67 10.19 43.70 3.91
3940 4562 9.420966 GAAATACTTTTTGTAGTTTGCAAAAGC 57.579 29.630 14.67 7.63 43.70 3.51
3944 4566 9.809096 TGATGAAATACTTTTTGTAGTTTGCAA 57.191 25.926 0.00 0.00 39.21 4.08
3945 4567 9.243637 GTGATGAAATACTTTTTGTAGTTTGCA 57.756 29.630 0.00 0.00 39.21 4.08
3946 4568 9.463443 AGTGATGAAATACTTTTTGTAGTTTGC 57.537 29.630 0.00 0.00 39.21 3.68
3950 4572 8.784043 GGTGAGTGATGAAATACTTTTTGTAGT 58.216 33.333 0.00 0.00 34.24 2.73
3951 4573 8.783093 TGGTGAGTGATGAAATACTTTTTGTAG 58.217 33.333 0.00 0.00 34.24 2.74
3952 4574 8.684386 TGGTGAGTGATGAAATACTTTTTGTA 57.316 30.769 0.00 0.00 35.37 2.41
3953 4575 7.581213 TGGTGAGTGATGAAATACTTTTTGT 57.419 32.000 0.00 0.00 0.00 2.83
3954 4576 8.517878 AGATGGTGAGTGATGAAATACTTTTTG 58.482 33.333 0.00 0.00 0.00 2.44
3955 4577 8.641498 AGATGGTGAGTGATGAAATACTTTTT 57.359 30.769 0.00 0.00 0.00 1.94
3956 4578 9.911788 ATAGATGGTGAGTGATGAAATACTTTT 57.088 29.630 0.00 0.00 0.00 2.27
3957 4579 9.553064 GATAGATGGTGAGTGATGAAATACTTT 57.447 33.333 0.00 0.00 0.00 2.66
3958 4580 8.932610 AGATAGATGGTGAGTGATGAAATACTT 58.067 33.333 0.00 0.00 0.00 2.24
3959 4581 8.489676 AGATAGATGGTGAGTGATGAAATACT 57.510 34.615 0.00 0.00 0.00 2.12
3960 4582 8.986847 CAAGATAGATGGTGAGTGATGAAATAC 58.013 37.037 0.00 0.00 0.00 1.89
3961 4583 8.152898 CCAAGATAGATGGTGAGTGATGAAATA 58.847 37.037 0.00 0.00 33.08 1.40
3962 4584 6.996879 CCAAGATAGATGGTGAGTGATGAAAT 59.003 38.462 0.00 0.00 33.08 2.17
3963 4585 6.351711 CCAAGATAGATGGTGAGTGATGAAA 58.648 40.000 0.00 0.00 33.08 2.69
3964 4586 5.922053 CCAAGATAGATGGTGAGTGATGAA 58.078 41.667 0.00 0.00 33.08 2.57
3965 4587 5.541953 CCAAGATAGATGGTGAGTGATGA 57.458 43.478 0.00 0.00 33.08 2.92
3975 4597 4.760530 TCTCACCAACCAAGATAGATGG 57.239 45.455 0.00 0.00 43.84 3.51
3976 4598 7.636150 AAATTCTCACCAACCAAGATAGATG 57.364 36.000 0.00 0.00 0.00 2.90
3977 4599 8.655935 AAAAATTCTCACCAACCAAGATAGAT 57.344 30.769 0.00 0.00 0.00 1.98
3999 4621 9.813446 TTTTCGGTTTACAAGGCTTAATAAAAA 57.187 25.926 14.20 6.24 0.00 1.94
4000 4622 9.465985 CTTTTCGGTTTACAAGGCTTAATAAAA 57.534 29.630 14.20 4.98 0.00 1.52
4001 4623 8.083462 CCTTTTCGGTTTACAAGGCTTAATAAA 58.917 33.333 0.00 5.64 29.71 1.40
4002 4624 7.447853 TCCTTTTCGGTTTACAAGGCTTAATAA 59.552 33.333 0.00 0.00 36.49 1.40
4003 4625 6.941436 TCCTTTTCGGTTTACAAGGCTTAATA 59.059 34.615 0.00 0.00 36.49 0.98
4004 4626 5.771165 TCCTTTTCGGTTTACAAGGCTTAAT 59.229 36.000 0.00 0.00 36.49 1.40
4005 4627 5.131784 TCCTTTTCGGTTTACAAGGCTTAA 58.868 37.500 0.00 0.00 36.49 1.85
4006 4628 4.716794 TCCTTTTCGGTTTACAAGGCTTA 58.283 39.130 0.00 0.00 36.49 3.09
4007 4629 3.558033 TCCTTTTCGGTTTACAAGGCTT 58.442 40.909 0.00 0.00 36.49 4.35
4008 4630 3.146847 CTCCTTTTCGGTTTACAAGGCT 58.853 45.455 0.00 0.00 36.49 4.58
4009 4631 2.228103 CCTCCTTTTCGGTTTACAAGGC 59.772 50.000 0.00 0.00 36.49 4.35
4010 4632 2.817844 CCCTCCTTTTCGGTTTACAAGG 59.182 50.000 0.00 0.00 37.70 3.61
4011 4633 3.746940 TCCCTCCTTTTCGGTTTACAAG 58.253 45.455 0.00 0.00 0.00 3.16
4012 4634 3.136992 ACTCCCTCCTTTTCGGTTTACAA 59.863 43.478 0.00 0.00 0.00 2.41
4013 4635 2.707257 ACTCCCTCCTTTTCGGTTTACA 59.293 45.455 0.00 0.00 0.00 2.41
4014 4636 3.413846 ACTCCCTCCTTTTCGGTTTAC 57.586 47.619 0.00 0.00 0.00 2.01
4015 4637 4.778958 TCATACTCCCTCCTTTTCGGTTTA 59.221 41.667 0.00 0.00 0.00 2.01
4016 4638 3.585732 TCATACTCCCTCCTTTTCGGTTT 59.414 43.478 0.00 0.00 0.00 3.27
4017 4639 3.178865 TCATACTCCCTCCTTTTCGGTT 58.821 45.455 0.00 0.00 0.00 4.44
4018 4640 2.829023 TCATACTCCCTCCTTTTCGGT 58.171 47.619 0.00 0.00 0.00 4.69
4019 4641 3.244249 GGATCATACTCCCTCCTTTTCGG 60.244 52.174 0.00 0.00 0.00 4.30
4020 4642 3.643792 AGGATCATACTCCCTCCTTTTCG 59.356 47.826 0.00 0.00 34.42 3.46
4021 4643 6.078664 TCTAGGATCATACTCCCTCCTTTTC 58.921 44.000 0.00 0.00 38.95 2.29
4022 4644 6.044411 TCTAGGATCATACTCCCTCCTTTT 57.956 41.667 0.00 0.00 38.95 2.27
4023 4645 5.688220 TCTAGGATCATACTCCCTCCTTT 57.312 43.478 0.00 0.00 38.95 3.11
4024 4646 5.894715 ATCTAGGATCATACTCCCTCCTT 57.105 43.478 0.00 0.00 38.95 3.36
4025 4647 5.282032 GGAATCTAGGATCATACTCCCTCCT 60.282 48.000 0.00 0.00 41.06 3.69
4026 4648 4.959839 GGAATCTAGGATCATACTCCCTCC 59.040 50.000 0.00 0.00 35.79 4.30
4027 4649 5.420739 GTGGAATCTAGGATCATACTCCCTC 59.579 48.000 0.00 0.00 35.79 4.30
4028 4650 5.162826 TGTGGAATCTAGGATCATACTCCCT 60.163 44.000 0.00 0.00 35.79 4.20
4029 4651 5.087323 TGTGGAATCTAGGATCATACTCCC 58.913 45.833 0.00 0.00 35.79 4.30
4030 4652 6.865834 ATGTGGAATCTAGGATCATACTCC 57.134 41.667 0.00 0.00 35.37 3.85
4031 4653 7.816995 GTGAATGTGGAATCTAGGATCATACTC 59.183 40.741 0.00 0.00 0.00 2.59
4032 4654 7.524532 CGTGAATGTGGAATCTAGGATCATACT 60.525 40.741 0.00 0.00 0.00 2.12
4033 4655 6.587990 CGTGAATGTGGAATCTAGGATCATAC 59.412 42.308 0.00 0.00 0.00 2.39
4094 4716 3.635373 AGCACCTCATTTAAGCATCCATG 59.365 43.478 0.00 0.00 0.00 3.66
4095 4717 3.907221 AGCACCTCATTTAAGCATCCAT 58.093 40.909 0.00 0.00 0.00 3.41
4096 4718 3.370840 AGCACCTCATTTAAGCATCCA 57.629 42.857 0.00 0.00 0.00 3.41
4097 4719 4.884164 ACTTAGCACCTCATTTAAGCATCC 59.116 41.667 0.00 0.00 0.00 3.51
4098 4720 5.731686 GCACTTAGCACCTCATTTAAGCATC 60.732 44.000 0.00 0.00 44.79 3.91
4099 4721 4.096984 GCACTTAGCACCTCATTTAAGCAT 59.903 41.667 0.00 0.00 44.79 3.79
4100 4722 3.440173 GCACTTAGCACCTCATTTAAGCA 59.560 43.478 0.00 0.00 44.79 3.91
4114 4736 8.587111 GTTGCTAATTCTTTTAATGCACTTAGC 58.413 33.333 0.00 0.00 45.96 3.09
4115 4737 9.846248 AGTTGCTAATTCTTTTAATGCACTTAG 57.154 29.630 0.00 0.00 0.00 2.18
4124 4746 8.799367 GGGGAGTTTAGTTGCTAATTCTTTTAA 58.201 33.333 0.00 0.00 0.00 1.52
4125 4747 7.945664 TGGGGAGTTTAGTTGCTAATTCTTTTA 59.054 33.333 0.00 0.00 0.00 1.52
4126 4748 6.780522 TGGGGAGTTTAGTTGCTAATTCTTTT 59.219 34.615 0.00 0.00 0.00 2.27
4127 4749 6.311735 TGGGGAGTTTAGTTGCTAATTCTTT 58.688 36.000 0.00 0.00 0.00 2.52
4128 4750 5.887754 TGGGGAGTTTAGTTGCTAATTCTT 58.112 37.500 0.00 0.00 0.00 2.52
4129 4751 5.514500 TGGGGAGTTTAGTTGCTAATTCT 57.486 39.130 0.00 0.00 0.00 2.40
4130 4752 5.710567 AGTTGGGGAGTTTAGTTGCTAATTC 59.289 40.000 0.00 0.00 0.00 2.17
4131 4753 5.641155 AGTTGGGGAGTTTAGTTGCTAATT 58.359 37.500 0.00 0.00 0.00 1.40
4132 4754 5.256806 AGTTGGGGAGTTTAGTTGCTAAT 57.743 39.130 0.00 0.00 0.00 1.73
4133 4755 4.717279 AGTTGGGGAGTTTAGTTGCTAA 57.283 40.909 0.00 0.00 0.00 3.09
4164 4811 9.512588 AATCTGAGTCTATGCCTAATTAAATGG 57.487 33.333 0.00 0.00 0.00 3.16
4198 4845 4.939255 ACTAAGCAGGTGTACCTAGGTAA 58.061 43.478 23.40 10.94 46.65 2.85
4209 4856 4.567159 GGAAGAAACGATACTAAGCAGGTG 59.433 45.833 0.00 0.00 0.00 4.00
4212 4859 5.651530 TCAGGAAGAAACGATACTAAGCAG 58.348 41.667 0.00 0.00 0.00 4.24
4264 4911 1.066908 CGGAGCACAAGCCTTTTTCAA 59.933 47.619 0.00 0.00 43.56 2.69
4266 4913 0.951558 TCGGAGCACAAGCCTTTTTC 59.048 50.000 0.00 0.00 43.56 2.29
4276 4923 8.717821 GTTGCTTTATATATAAATCGGAGCACA 58.282 33.333 20.69 13.13 32.10 4.57
4278 4925 7.815549 TCGTTGCTTTATATATAAATCGGAGCA 59.184 33.333 18.47 18.47 32.36 4.26
4291 4938 6.866010 TGATGATTGCTCGTTGCTTTATAT 57.134 33.333 5.00 0.00 43.37 0.86
4305 4952 3.611113 GTGTTGAGTTGCATGATGATTGC 59.389 43.478 0.00 0.00 40.55 3.56
4316 4963 2.726760 CGAGTAGAGTGTGTTGAGTTGC 59.273 50.000 0.00 0.00 0.00 4.17
4332 4979 0.390124 GTGTGTTGGGGTGTCGAGTA 59.610 55.000 0.00 0.00 0.00 2.59
4337 4984 0.393808 AGTGTGTGTGTTGGGGTGTC 60.394 55.000 0.00 0.00 0.00 3.67
4343 4990 0.381801 GCCTTGAGTGTGTGTGTTGG 59.618 55.000 0.00 0.00 0.00 3.77
4348 4995 4.905429 TGTATTATGCCTTGAGTGTGTGT 58.095 39.130 0.00 0.00 0.00 3.72
4361 5008 7.148573 CCTGTTCTTATCGTCCATGTATTATGC 60.149 40.741 0.00 0.00 0.00 3.14
4365 5012 6.235231 ACCTGTTCTTATCGTCCATGTATT 57.765 37.500 0.00 0.00 0.00 1.89
4374 5021 6.518493 TCTTTTGTGTACCTGTTCTTATCGT 58.482 36.000 0.00 0.00 0.00 3.73
4375 5022 6.645415 ACTCTTTTGTGTACCTGTTCTTATCG 59.355 38.462 0.00 0.00 0.00 2.92


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.