Multiple sequence alignment - TraesCS6A01G026700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G026700 chr6A 100.000 2475 0 0 1 2475 13433365 13435839 0.000000e+00 4571.0
1 TraesCS6A01G026700 chr6A 98.615 361 5 0 1 361 13424889 13425249 7.460000e-180 640.0
2 TraesCS6A01G026700 chr6D 90.998 2144 144 14 370 2475 11920906 11923038 0.000000e+00 2844.0
3 TraesCS6A01G026700 chr6D 87.302 63 7 1 2187 2249 451789357 451789296 1.230000e-08 71.3
4 TraesCS6A01G026700 chr6B 90.446 1120 57 26 362 1444 21872295 21873401 0.000000e+00 1430.0
5 TraesCS6A01G026700 chr6B 98.066 362 6 1 1 362 262079804 262080164 1.620000e-176 628.0
6 TraesCS6A01G026700 chrUn 98.338 361 5 1 1 361 225843794 225843435 1.250000e-177 632.0
7 TraesCS6A01G026700 chr7B 98.066 362 7 0 1 362 84131215 84131576 4.490000e-177 630.0
8 TraesCS6A01G026700 chr7B 86.735 98 9 4 2177 2273 88244909 88244815 3.370000e-19 106.0
9 TraesCS6A01G026700 chr4A 98.333 360 5 1 3 362 585956405 585956047 4.490000e-177 630.0
10 TraesCS6A01G026700 chr4A 98.072 363 6 1 1 363 630702145 630701784 4.490000e-177 630.0
11 TraesCS6A01G026700 chr7A 97.796 363 7 1 1 363 487013275 487013636 2.090000e-175 625.0
12 TraesCS6A01G026700 chr7A 83.019 106 13 5 2174 2278 127594221 127594322 9.430000e-15 91.6
13 TraesCS6A01G026700 chr7A 88.000 50 6 0 1867 1916 426698637 426698588 2.660000e-05 60.2
14 TraesCS6A01G026700 chr3A 97.043 372 8 3 1 372 6964165 6964533 7.520000e-175 623.0
15 TraesCS6A01G026700 chr4B 96.296 378 11 3 1 378 278285079 278285453 3.500000e-173 617.0
16 TraesCS6A01G026700 chr2A 91.740 339 22 5 1079 1411 436721337 436720999 1.340000e-127 466.0
17 TraesCS6A01G026700 chr2A 86.275 102 11 3 2177 2278 668083481 668083383 9.360000e-20 108.0
18 TraesCS6A01G026700 chr2A 77.333 150 21 7 2177 2315 611726575 611726428 2.640000e-10 76.8
19 TraesCS6A01G026700 chr2D 91.150 339 24 5 1079 1411 329861275 329860937 2.900000e-124 455.0
20 TraesCS6A01G026700 chr2D 82.927 82 14 0 2177 2258 7171265 7171346 9.490000e-10 75.0
21 TraesCS6A01G026700 chr2B 90.855 339 25 5 1079 1411 398395085 398394747 1.350000e-122 449.0
22 TraesCS6A01G026700 chr5A 82.609 138 11 8 2177 2313 646357757 646357882 2.600000e-20 110.0
23 TraesCS6A01G026700 chr7D 84.112 107 10 7 2174 2278 126664571 126664672 2.030000e-16 97.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G026700 chr6A 13433365 13435839 2474 False 4571 4571 100.000 1 2475 1 chr6A.!!$F2 2474
1 TraesCS6A01G026700 chr6D 11920906 11923038 2132 False 2844 2844 90.998 370 2475 1 chr6D.!!$F1 2105
2 TraesCS6A01G026700 chr6B 21872295 21873401 1106 False 1430 1430 90.446 362 1444 1 chr6B.!!$F1 1082

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
40 41 0.029035 CTACTACTACGTGCTGCCCG 59.971 60.0 2.26 2.26 0.0 6.13 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1569 1620 0.037605 CAAACGAGTAGGCCGGAGTT 60.038 55.0 5.05 0.0 0.0 3.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
31 32 0.942962 CGGAGGTGCCTACTACTACG 59.057 60.000 0.00 0.00 0.00 3.51
32 33 1.745141 CGGAGGTGCCTACTACTACGT 60.745 57.143 0.00 0.00 0.00 3.57
33 34 1.674962 GGAGGTGCCTACTACTACGTG 59.325 57.143 0.00 0.00 0.00 4.49
34 35 1.065251 GAGGTGCCTACTACTACGTGC 59.935 57.143 0.00 0.00 0.00 5.34
35 36 1.101331 GGTGCCTACTACTACGTGCT 58.899 55.000 0.00 0.00 0.00 4.40
36 37 1.202268 GGTGCCTACTACTACGTGCTG 60.202 57.143 0.00 0.00 0.00 4.41
37 38 0.454600 TGCCTACTACTACGTGCTGC 59.545 55.000 0.00 0.00 0.00 5.25
38 39 0.248949 GCCTACTACTACGTGCTGCC 60.249 60.000 0.00 0.00 0.00 4.85
39 40 0.384669 CCTACTACTACGTGCTGCCC 59.615 60.000 0.00 0.00 0.00 5.36
40 41 0.029035 CTACTACTACGTGCTGCCCG 59.971 60.000 2.26 2.26 0.00 6.13
41 42 1.996786 TACTACTACGTGCTGCCCGC 61.997 60.000 4.01 0.00 39.77 6.13
42 43 3.064987 CTACTACGTGCTGCCCGCT 62.065 63.158 4.01 0.00 40.11 5.52
43 44 3.350909 TACTACGTGCTGCCCGCTG 62.351 63.158 4.01 0.06 40.11 5.18
44 45 4.435436 CTACGTGCTGCCCGCTGA 62.435 66.667 4.01 0.00 40.11 4.26
45 46 3.723235 CTACGTGCTGCCCGCTGAT 62.723 63.158 4.01 0.00 40.11 2.90
48 49 3.503363 GTGCTGCCCGCTGATGAC 61.503 66.667 0.00 0.00 40.11 3.06
50 51 4.819761 GCTGCCCGCTGATGACGA 62.820 66.667 0.00 0.00 35.14 4.20
51 52 2.887568 CTGCCCGCTGATGACGAC 60.888 66.667 0.00 0.00 0.00 4.34
52 53 4.451150 TGCCCGCTGATGACGACC 62.451 66.667 0.00 0.00 0.00 4.79
53 54 4.148825 GCCCGCTGATGACGACCT 62.149 66.667 0.00 0.00 0.00 3.85
54 55 2.782222 GCCCGCTGATGACGACCTA 61.782 63.158 0.00 0.00 0.00 3.08
55 56 1.360551 CCCGCTGATGACGACCTAG 59.639 63.158 0.00 0.00 0.00 3.02
56 57 1.101635 CCCGCTGATGACGACCTAGA 61.102 60.000 0.00 0.00 0.00 2.43
57 58 0.309302 CCGCTGATGACGACCTAGAG 59.691 60.000 0.00 0.00 0.00 2.43
58 59 1.018148 CGCTGATGACGACCTAGAGT 58.982 55.000 0.00 0.00 0.00 3.24
59 60 2.210961 CGCTGATGACGACCTAGAGTA 58.789 52.381 0.00 0.00 0.00 2.59
60 61 2.222213 CGCTGATGACGACCTAGAGTAG 59.778 54.545 0.00 0.00 0.00 2.57
61 62 3.207778 GCTGATGACGACCTAGAGTAGT 58.792 50.000 0.00 0.00 36.98 2.73
62 63 3.628487 GCTGATGACGACCTAGAGTAGTT 59.372 47.826 0.00 0.00 34.05 2.24
63 64 4.096682 GCTGATGACGACCTAGAGTAGTTT 59.903 45.833 0.00 0.00 34.05 2.66
64 65 5.296283 GCTGATGACGACCTAGAGTAGTTTA 59.704 44.000 0.00 0.00 34.05 2.01
65 66 6.512091 GCTGATGACGACCTAGAGTAGTTTAG 60.512 46.154 0.00 0.00 34.05 1.85
66 67 5.821470 TGATGACGACCTAGAGTAGTTTAGG 59.179 44.000 11.75 11.75 41.80 2.69
67 68 5.426689 TGACGACCTAGAGTAGTTTAGGA 57.573 43.478 18.72 0.00 39.02 2.94
68 69 5.426504 TGACGACCTAGAGTAGTTTAGGAG 58.573 45.833 18.72 14.06 39.02 3.69
69 70 4.779696 ACGACCTAGAGTAGTTTAGGAGG 58.220 47.826 18.72 12.30 39.02 4.30
70 71 4.472833 ACGACCTAGAGTAGTTTAGGAGGA 59.527 45.833 18.72 0.00 39.02 3.71
71 72 5.132480 ACGACCTAGAGTAGTTTAGGAGGAT 59.868 44.000 18.72 0.00 39.02 3.24
72 73 5.702209 CGACCTAGAGTAGTTTAGGAGGATC 59.298 48.000 18.72 6.76 39.02 3.36
73 74 9.535405 ACGACCTAGAGTAGTTTAGGAGGATCC 62.535 48.148 18.72 2.48 43.73 3.36
83 84 3.560989 GAGGATCCCAGGCAGGAG 58.439 66.667 8.55 0.00 39.95 3.69
84 85 2.040043 AGGATCCCAGGCAGGAGG 60.040 66.667 8.55 0.00 39.95 4.30
85 86 3.883549 GGATCCCAGGCAGGAGGC 61.884 72.222 0.00 0.00 39.95 4.70
101 102 2.512515 GCCTGCGCCTCTTTCGAT 60.513 61.111 4.18 0.00 0.00 3.59
102 103 2.529619 GCCTGCGCCTCTTTCGATC 61.530 63.158 4.18 0.00 0.00 3.69
103 104 1.142748 CCTGCGCCTCTTTCGATCT 59.857 57.895 4.18 0.00 0.00 2.75
104 105 1.150567 CCTGCGCCTCTTTCGATCTG 61.151 60.000 4.18 0.00 0.00 2.90
105 106 0.459237 CTGCGCCTCTTTCGATCTGT 60.459 55.000 4.18 0.00 0.00 3.41
106 107 0.815095 TGCGCCTCTTTCGATCTGTA 59.185 50.000 4.18 0.00 0.00 2.74
107 108 1.409064 TGCGCCTCTTTCGATCTGTAT 59.591 47.619 4.18 0.00 0.00 2.29
108 109 2.055100 GCGCCTCTTTCGATCTGTATC 58.945 52.381 0.00 0.00 0.00 2.24
109 110 2.667137 CGCCTCTTTCGATCTGTATCC 58.333 52.381 0.00 0.00 0.00 2.59
110 111 2.608261 CGCCTCTTTCGATCTGTATCCC 60.608 54.545 0.00 0.00 0.00 3.85
111 112 2.365617 GCCTCTTTCGATCTGTATCCCA 59.634 50.000 0.00 0.00 0.00 4.37
112 113 3.553922 GCCTCTTTCGATCTGTATCCCAG 60.554 52.174 0.00 0.00 42.97 4.45
113 114 3.639094 CCTCTTTCGATCTGTATCCCAGT 59.361 47.826 0.00 0.00 42.19 4.00
114 115 4.100189 CCTCTTTCGATCTGTATCCCAGTT 59.900 45.833 0.00 0.00 42.19 3.16
115 116 5.395768 CCTCTTTCGATCTGTATCCCAGTTT 60.396 44.000 0.00 0.00 42.19 2.66
116 117 5.419542 TCTTTCGATCTGTATCCCAGTTTG 58.580 41.667 0.00 0.00 42.19 2.93
117 118 4.819105 TTCGATCTGTATCCCAGTTTGT 57.181 40.909 0.00 0.00 42.19 2.83
118 119 4.123497 TCGATCTGTATCCCAGTTTGTG 57.877 45.455 0.00 0.00 42.19 3.33
119 120 2.609459 CGATCTGTATCCCAGTTTGTGC 59.391 50.000 0.00 0.00 42.19 4.57
120 121 3.679917 CGATCTGTATCCCAGTTTGTGCT 60.680 47.826 0.00 0.00 42.19 4.40
121 122 4.441495 CGATCTGTATCCCAGTTTGTGCTA 60.441 45.833 0.00 0.00 42.19 3.49
122 123 4.471904 TCTGTATCCCAGTTTGTGCTAG 57.528 45.455 0.00 0.00 42.19 3.42
123 124 2.939103 CTGTATCCCAGTTTGTGCTAGC 59.061 50.000 8.10 8.10 36.37 3.42
124 125 2.289565 GTATCCCAGTTTGTGCTAGCC 58.710 52.381 13.29 4.15 0.00 3.93
125 126 0.995024 ATCCCAGTTTGTGCTAGCCT 59.005 50.000 13.29 0.00 0.00 4.58
126 127 0.771127 TCCCAGTTTGTGCTAGCCTT 59.229 50.000 13.29 0.00 0.00 4.35
127 128 1.168714 CCCAGTTTGTGCTAGCCTTC 58.831 55.000 13.29 3.48 0.00 3.46
128 129 1.271597 CCCAGTTTGTGCTAGCCTTCT 60.272 52.381 13.29 0.83 0.00 2.85
129 130 2.508526 CCAGTTTGTGCTAGCCTTCTT 58.491 47.619 13.29 0.00 0.00 2.52
130 131 3.559171 CCCAGTTTGTGCTAGCCTTCTTA 60.559 47.826 13.29 0.00 0.00 2.10
131 132 4.072131 CCAGTTTGTGCTAGCCTTCTTAA 58.928 43.478 13.29 0.00 0.00 1.85
132 133 4.154918 CCAGTTTGTGCTAGCCTTCTTAAG 59.845 45.833 13.29 0.00 0.00 1.85
133 134 4.997395 CAGTTTGTGCTAGCCTTCTTAAGA 59.003 41.667 13.29 0.00 0.00 2.10
134 135 4.998033 AGTTTGTGCTAGCCTTCTTAAGAC 59.002 41.667 13.29 0.32 0.00 3.01
135 136 4.617253 TTGTGCTAGCCTTCTTAAGACA 57.383 40.909 13.29 3.30 0.00 3.41
136 137 4.617253 TGTGCTAGCCTTCTTAAGACAA 57.383 40.909 13.29 0.00 0.00 3.18
137 138 4.968259 TGTGCTAGCCTTCTTAAGACAAA 58.032 39.130 13.29 0.00 0.00 2.83
138 139 4.755123 TGTGCTAGCCTTCTTAAGACAAAC 59.245 41.667 13.29 0.00 0.00 2.93
139 140 4.998033 GTGCTAGCCTTCTTAAGACAAACT 59.002 41.667 13.29 3.43 0.00 2.66
140 141 5.470437 GTGCTAGCCTTCTTAAGACAAACTT 59.530 40.000 13.29 0.00 42.04 2.66
141 142 5.470098 TGCTAGCCTTCTTAAGACAAACTTG 59.530 40.000 13.29 3.37 39.38 3.16
142 143 5.470437 GCTAGCCTTCTTAAGACAAACTTGT 59.530 40.000 4.18 0.00 45.65 3.16
143 144 6.017026 GCTAGCCTTCTTAAGACAAACTTGTT 60.017 38.462 4.18 0.00 42.43 2.83
144 145 6.775594 AGCCTTCTTAAGACAAACTTGTTT 57.224 33.333 4.18 0.00 42.43 2.83
145 146 7.875327 AGCCTTCTTAAGACAAACTTGTTTA 57.125 32.000 4.18 0.00 42.43 2.01
146 147 8.288689 AGCCTTCTTAAGACAAACTTGTTTAA 57.711 30.769 4.18 4.01 42.43 1.52
147 148 8.188799 AGCCTTCTTAAGACAAACTTGTTTAAC 58.811 33.333 4.18 0.00 42.43 2.01
148 149 8.188799 GCCTTCTTAAGACAAACTTGTTTAACT 58.811 33.333 4.18 0.00 42.43 2.24
157 158 9.174166 AGACAAACTTGTTTAACTTATGTCTGT 57.826 29.630 15.61 5.82 42.27 3.41
162 163 9.826574 AACTTGTTTAACTTATGTCTGTACTCA 57.173 29.630 0.00 0.00 0.00 3.41
163 164 9.477484 ACTTGTTTAACTTATGTCTGTACTCAG 57.523 33.333 0.00 0.00 42.54 3.35
164 165 9.692749 CTTGTTTAACTTATGTCTGTACTCAGA 57.307 33.333 0.00 0.00 46.85 3.27
177 178 6.341316 TCTGTACTCAGATATTGTTGCTTCC 58.659 40.000 0.00 0.00 44.58 3.46
178 179 5.109210 TGTACTCAGATATTGTTGCTTCCG 58.891 41.667 0.00 0.00 0.00 4.30
179 180 2.939103 ACTCAGATATTGTTGCTTCCGC 59.061 45.455 0.00 0.00 0.00 5.54
180 181 3.201290 CTCAGATATTGTTGCTTCCGCT 58.799 45.455 0.00 0.00 36.97 5.52
181 182 2.938451 TCAGATATTGTTGCTTCCGCTG 59.062 45.455 0.00 0.00 36.97 5.18
182 183 2.938451 CAGATATTGTTGCTTCCGCTGA 59.062 45.455 0.00 0.00 36.97 4.26
183 184 2.939103 AGATATTGTTGCTTCCGCTGAC 59.061 45.455 0.00 0.00 36.97 3.51
184 185 2.472695 TATTGTTGCTTCCGCTGACT 57.527 45.000 0.00 0.00 36.97 3.41
185 186 1.160137 ATTGTTGCTTCCGCTGACTC 58.840 50.000 0.00 0.00 36.97 3.36
186 187 1.221466 TTGTTGCTTCCGCTGACTCG 61.221 55.000 0.00 0.00 36.97 4.18
187 188 1.664965 GTTGCTTCCGCTGACTCGT 60.665 57.895 0.00 0.00 36.97 4.18
188 189 1.372997 TTGCTTCCGCTGACTCGTC 60.373 57.895 0.00 0.00 36.97 4.20
189 190 1.806461 TTGCTTCCGCTGACTCGTCT 61.806 55.000 0.00 0.00 36.97 4.18
190 191 0.958876 TGCTTCCGCTGACTCGTCTA 60.959 55.000 0.00 0.00 36.97 2.59
191 192 0.382515 GCTTCCGCTGACTCGTCTAT 59.617 55.000 0.00 0.00 0.00 1.98
192 193 1.862008 GCTTCCGCTGACTCGTCTATG 60.862 57.143 0.00 0.00 0.00 2.23
193 194 1.671328 CTTCCGCTGACTCGTCTATGA 59.329 52.381 0.00 0.00 0.00 2.15
194 195 1.968704 TCCGCTGACTCGTCTATGAT 58.031 50.000 0.00 0.00 0.00 2.45
195 196 1.874231 TCCGCTGACTCGTCTATGATC 59.126 52.381 0.00 0.00 0.00 2.92
196 197 1.399087 CCGCTGACTCGTCTATGATCG 60.399 57.143 0.00 0.00 0.00 3.69
197 198 1.527311 CGCTGACTCGTCTATGATCGA 59.473 52.381 0.00 0.00 34.88 3.59
203 204 3.617540 CTCGTCTATGATCGAGCACTT 57.382 47.619 5.03 0.00 44.82 3.16
204 205 3.295785 CTCGTCTATGATCGAGCACTTG 58.704 50.000 5.03 0.00 44.82 3.16
205 206 2.683362 TCGTCTATGATCGAGCACTTGT 59.317 45.455 5.03 0.00 0.00 3.16
206 207 3.875134 TCGTCTATGATCGAGCACTTGTA 59.125 43.478 5.03 0.00 0.00 2.41
207 208 4.515567 TCGTCTATGATCGAGCACTTGTAT 59.484 41.667 5.03 0.00 0.00 2.29
208 209 5.008712 TCGTCTATGATCGAGCACTTGTATT 59.991 40.000 5.03 0.00 0.00 1.89
209 210 5.340932 CGTCTATGATCGAGCACTTGTATTC 59.659 44.000 5.03 0.00 0.00 1.75
210 211 5.340932 GTCTATGATCGAGCACTTGTATTCG 59.659 44.000 5.03 0.00 34.56 3.34
211 212 3.775661 TGATCGAGCACTTGTATTCGA 57.224 42.857 0.00 9.86 44.88 3.71
212 213 3.695816 TGATCGAGCACTTGTATTCGAG 58.304 45.455 0.00 0.00 44.14 4.04
213 214 1.909376 TCGAGCACTTGTATTCGAGC 58.091 50.000 5.19 0.00 37.18 5.03
214 215 0.924090 CGAGCACTTGTATTCGAGCC 59.076 55.000 0.00 0.00 35.19 4.70
215 216 1.291132 GAGCACTTGTATTCGAGCCC 58.709 55.000 0.00 0.00 0.00 5.19
216 217 0.905357 AGCACTTGTATTCGAGCCCT 59.095 50.000 0.00 0.00 0.00 5.19
217 218 1.134670 AGCACTTGTATTCGAGCCCTC 60.135 52.381 0.00 0.00 0.00 4.30
240 241 2.656947 GCCCCTGGCTTGTATTATGA 57.343 50.000 0.00 0.00 46.69 2.15
241 242 3.160679 GCCCCTGGCTTGTATTATGAT 57.839 47.619 0.00 0.00 46.69 2.45
242 243 2.821969 GCCCCTGGCTTGTATTATGATG 59.178 50.000 0.00 0.00 46.69 3.07
243 244 2.821969 CCCCTGGCTTGTATTATGATGC 59.178 50.000 0.00 0.00 0.00 3.91
244 245 3.499202 CCCCTGGCTTGTATTATGATGCT 60.499 47.826 0.00 0.00 0.00 3.79
245 246 4.147321 CCCTGGCTTGTATTATGATGCTT 58.853 43.478 0.00 0.00 0.00 3.91
246 247 4.022589 CCCTGGCTTGTATTATGATGCTTG 60.023 45.833 0.00 0.00 0.00 4.01
247 248 4.581824 CCTGGCTTGTATTATGATGCTTGT 59.418 41.667 0.00 0.00 0.00 3.16
248 249 5.764686 CCTGGCTTGTATTATGATGCTTGTA 59.235 40.000 0.00 0.00 0.00 2.41
249 250 6.432162 CCTGGCTTGTATTATGATGCTTGTAT 59.568 38.462 0.00 0.00 0.00 2.29
250 251 7.205737 TGGCTTGTATTATGATGCTTGTATG 57.794 36.000 0.00 0.00 0.00 2.39
251 252 6.997476 TGGCTTGTATTATGATGCTTGTATGA 59.003 34.615 0.00 0.00 0.00 2.15
252 253 7.041167 TGGCTTGTATTATGATGCTTGTATGAC 60.041 37.037 0.00 0.00 0.00 3.06
253 254 7.173907 GGCTTGTATTATGATGCTTGTATGACT 59.826 37.037 0.00 0.00 0.00 3.41
254 255 8.562892 GCTTGTATTATGATGCTTGTATGACTT 58.437 33.333 0.00 0.00 0.00 3.01
286 287 9.337396 TGTTTTTAGAGTTGTGTTGTGATATCT 57.663 29.630 3.98 0.00 0.00 1.98
290 291 8.547967 TTAGAGTTGTGTTGTGATATCTTTCC 57.452 34.615 3.98 0.00 0.00 3.13
291 292 5.639506 AGAGTTGTGTTGTGATATCTTTCCG 59.360 40.000 3.98 0.00 0.00 4.30
292 293 5.305585 AGTTGTGTTGTGATATCTTTCCGT 58.694 37.500 3.98 0.00 0.00 4.69
293 294 5.179368 AGTTGTGTTGTGATATCTTTCCGTG 59.821 40.000 3.98 0.00 0.00 4.94
294 295 4.888917 TGTGTTGTGATATCTTTCCGTGA 58.111 39.130 3.98 0.00 0.00 4.35
295 296 4.929211 TGTGTTGTGATATCTTTCCGTGAG 59.071 41.667 3.98 0.00 0.00 3.51
296 297 4.929808 GTGTTGTGATATCTTTCCGTGAGT 59.070 41.667 3.98 0.00 0.00 3.41
297 298 5.062308 GTGTTGTGATATCTTTCCGTGAGTC 59.938 44.000 3.98 0.00 0.00 3.36
298 299 4.386867 TGTGATATCTTTCCGTGAGTCC 57.613 45.455 3.98 0.00 0.00 3.85
299 300 3.132289 TGTGATATCTTTCCGTGAGTCCC 59.868 47.826 3.98 0.00 0.00 4.46
300 301 3.385111 GTGATATCTTTCCGTGAGTCCCT 59.615 47.826 3.98 0.00 0.00 4.20
301 302 3.384789 TGATATCTTTCCGTGAGTCCCTG 59.615 47.826 3.98 0.00 0.00 4.45
302 303 1.938585 ATCTTTCCGTGAGTCCCTGA 58.061 50.000 0.00 0.00 0.00 3.86
303 304 1.938585 TCTTTCCGTGAGTCCCTGAT 58.061 50.000 0.00 0.00 0.00 2.90
304 305 1.825474 TCTTTCCGTGAGTCCCTGATC 59.175 52.381 0.00 0.00 0.00 2.92
305 306 1.827969 CTTTCCGTGAGTCCCTGATCT 59.172 52.381 0.00 0.00 0.00 2.75
306 307 1.938585 TTCCGTGAGTCCCTGATCTT 58.061 50.000 0.00 0.00 0.00 2.40
307 308 1.186200 TCCGTGAGTCCCTGATCTTG 58.814 55.000 0.00 0.00 0.00 3.02
308 309 1.186200 CCGTGAGTCCCTGATCTTGA 58.814 55.000 0.00 0.00 0.00 3.02
309 310 1.759445 CCGTGAGTCCCTGATCTTGAT 59.241 52.381 0.00 0.00 0.00 2.57
310 311 2.223923 CCGTGAGTCCCTGATCTTGATC 60.224 54.545 3.82 3.82 0.00 2.92
311 312 2.542618 CGTGAGTCCCTGATCTTGATCG 60.543 54.545 6.19 2.03 0.00 3.69
312 313 2.428890 GTGAGTCCCTGATCTTGATCGT 59.571 50.000 6.19 0.00 0.00 3.73
313 314 3.632604 GTGAGTCCCTGATCTTGATCGTA 59.367 47.826 6.19 0.00 0.00 3.43
314 315 3.632604 TGAGTCCCTGATCTTGATCGTAC 59.367 47.826 6.19 2.53 0.00 3.67
315 316 3.632333 AGTCCCTGATCTTGATCGTACA 58.368 45.455 6.19 0.00 0.00 2.90
316 317 3.381908 AGTCCCTGATCTTGATCGTACAC 59.618 47.826 6.19 1.73 0.00 2.90
317 318 2.357952 TCCCTGATCTTGATCGTACACG 59.642 50.000 6.19 0.00 41.45 4.49
318 319 2.099263 CCCTGATCTTGATCGTACACGT 59.901 50.000 1.19 0.00 40.80 4.49
319 320 3.428999 CCCTGATCTTGATCGTACACGTT 60.429 47.826 1.19 0.00 40.80 3.99
320 321 4.174009 CCTGATCTTGATCGTACACGTTT 58.826 43.478 1.19 0.00 40.80 3.60
321 322 4.031765 CCTGATCTTGATCGTACACGTTTG 59.968 45.833 1.19 0.00 40.80 2.93
322 323 3.366724 TGATCTTGATCGTACACGTTTGC 59.633 43.478 1.19 0.00 40.80 3.68
323 324 2.745102 TCTTGATCGTACACGTTTGCA 58.255 42.857 1.19 0.00 40.80 4.08
324 325 3.322369 TCTTGATCGTACACGTTTGCAT 58.678 40.909 1.19 0.00 40.80 3.96
325 326 3.122780 TCTTGATCGTACACGTTTGCATG 59.877 43.478 1.19 0.00 40.80 4.06
326 327 1.127766 TGATCGTACACGTTTGCATGC 59.872 47.619 11.82 11.82 40.80 4.06
327 328 1.127766 GATCGTACACGTTTGCATGCA 59.872 47.619 18.46 18.46 40.80 3.96
328 329 1.152510 TCGTACACGTTTGCATGCAT 58.847 45.000 23.37 7.94 40.80 3.96
329 330 1.136113 TCGTACACGTTTGCATGCATG 60.136 47.619 23.37 22.70 40.80 4.06
330 331 1.136113 CGTACACGTTTGCATGCATGA 60.136 47.619 30.64 10.85 34.11 3.07
331 332 2.476018 CGTACACGTTTGCATGCATGAT 60.476 45.455 30.64 9.75 34.11 2.45
332 333 2.728690 ACACGTTTGCATGCATGATT 57.271 40.000 30.64 3.74 0.00 2.57
333 334 3.846423 ACACGTTTGCATGCATGATTA 57.154 38.095 30.64 12.42 0.00 1.75
334 335 3.761657 ACACGTTTGCATGCATGATTAG 58.238 40.909 30.64 17.39 0.00 1.73
335 336 3.191162 ACACGTTTGCATGCATGATTAGT 59.809 39.130 30.64 18.00 0.00 2.24
336 337 3.544682 CACGTTTGCATGCATGATTAGTG 59.455 43.478 30.64 24.07 0.00 2.74
337 338 3.191162 ACGTTTGCATGCATGATTAGTGT 59.809 39.130 30.64 16.38 0.00 3.55
338 339 4.394610 ACGTTTGCATGCATGATTAGTGTA 59.605 37.500 30.64 0.00 0.00 2.90
339 340 4.730042 CGTTTGCATGCATGATTAGTGTAC 59.270 41.667 30.64 9.40 0.00 2.90
340 341 4.534794 TTGCATGCATGATTAGTGTACG 57.465 40.909 30.64 0.00 0.00 3.67
341 342 3.791245 TGCATGCATGATTAGTGTACGA 58.209 40.909 30.64 0.00 0.00 3.43
342 343 4.379652 TGCATGCATGATTAGTGTACGAT 58.620 39.130 30.64 0.00 0.00 3.73
343 344 4.815846 TGCATGCATGATTAGTGTACGATT 59.184 37.500 30.64 0.00 0.00 3.34
344 345 5.142265 GCATGCATGATTAGTGTACGATTG 58.858 41.667 30.64 0.00 0.00 2.67
345 346 5.050159 GCATGCATGATTAGTGTACGATTGA 60.050 40.000 30.64 0.00 0.00 2.57
346 347 6.511605 GCATGCATGATTAGTGTACGATTGAA 60.512 38.462 30.64 0.00 0.00 2.69
347 348 7.578852 CATGCATGATTAGTGTACGATTGAAT 58.421 34.615 22.59 0.00 0.00 2.57
348 349 7.177498 TGCATGATTAGTGTACGATTGAATC 57.823 36.000 0.00 0.00 0.00 2.52
357 358 3.732470 GATTGAATCGGGGGCGTC 58.268 61.111 0.00 0.00 0.00 5.19
358 359 1.153249 GATTGAATCGGGGGCGTCA 60.153 57.895 0.00 0.00 0.00 4.35
359 360 1.436983 GATTGAATCGGGGGCGTCAC 61.437 60.000 0.00 0.00 0.00 3.67
360 361 2.191786 ATTGAATCGGGGGCGTCACA 62.192 55.000 0.00 0.00 0.00 3.58
361 362 2.511600 GAATCGGGGGCGTCACAG 60.512 66.667 0.00 0.00 0.00 3.66
362 363 4.778143 AATCGGGGGCGTCACAGC 62.778 66.667 0.00 0.00 0.00 4.40
413 414 0.739462 CGGCAGCTCCATGTCGTTTA 60.739 55.000 0.00 0.00 43.12 2.01
453 454 1.601759 CTGGCCACAAGGACCACTG 60.602 63.158 0.00 0.00 45.14 3.66
455 456 2.829384 GGCCACAAGGACCACTGGA 61.829 63.158 0.71 0.00 36.69 3.86
461 462 2.571216 AAGGACCACTGGACCGACG 61.571 63.158 10.51 0.00 42.13 5.12
493 494 1.599797 CGTGAACCTCACCCCAACC 60.600 63.158 1.34 0.00 44.20 3.77
494 495 1.534697 GTGAACCTCACCCCAACCA 59.465 57.895 0.00 0.00 41.37 3.67
499 500 2.671070 CTCACCCCAACCAGCGAT 59.329 61.111 0.00 0.00 0.00 4.58
546 547 2.555664 AGAGTTGGACATGGGAGACAT 58.444 47.619 0.00 0.00 41.57 3.06
551 552 2.126057 TGGACATGGGAGACATATGCA 58.874 47.619 1.58 0.00 37.84 3.96
583 584 4.082190 CCCATGTCTTACTCTTTCTCGTCA 60.082 45.833 0.00 0.00 0.00 4.35
615 616 1.118965 TTCACTTCCCGAGGCTCACA 61.119 55.000 15.95 0.00 0.00 3.58
628 629 1.375098 GCTCACAGCCAGAAGATGCC 61.375 60.000 0.00 0.00 34.48 4.40
634 635 1.817099 GCCAGAAGATGCCGGACAG 60.817 63.158 5.05 0.00 0.00 3.51
781 786 4.520874 TCCGGTTTGCAAACAAATCATCTA 59.479 37.500 35.95 13.13 45.53 1.98
827 832 1.741770 GTGTCCAGACGGATGGTGC 60.742 63.158 7.90 4.04 45.33 5.01
837 845 4.402474 CAGACGGATGGTGCATATAGGATA 59.598 45.833 0.00 0.00 0.00 2.59
938 946 0.837691 AGCAGTGTGTCCATCCTCCA 60.838 55.000 0.00 0.00 0.00 3.86
986 994 2.755655 TCGCCTCTATATAAGCTCTGCC 59.244 50.000 0.00 0.00 0.00 4.85
1010 1019 3.204467 TTCCCTCCCCTTTGCACCG 62.204 63.158 0.00 0.00 0.00 4.94
1011 1020 3.966543 CCCTCCCCTTTGCACCGT 61.967 66.667 0.00 0.00 0.00 4.83
1012 1021 2.359975 CCTCCCCTTTGCACCGTC 60.360 66.667 0.00 0.00 0.00 4.79
1013 1022 2.742372 CTCCCCTTTGCACCGTCG 60.742 66.667 0.00 0.00 0.00 5.12
1014 1023 3.234630 CTCCCCTTTGCACCGTCGA 62.235 63.158 0.00 0.00 0.00 4.20
1015 1024 2.281208 CCCCTTTGCACCGTCGAA 60.281 61.111 0.00 0.00 0.00 3.71
1016 1025 1.674322 CCCCTTTGCACCGTCGAAT 60.674 57.895 0.00 0.00 0.00 3.34
1031 1040 3.974871 TCGAATATCGATCACCGTTGA 57.025 42.857 0.00 0.00 44.82 3.18
1047 1087 1.588861 GTTGACGATCGAAAGCTAGCC 59.411 52.381 24.34 0.00 0.00 3.93
1049 1089 1.203758 TGACGATCGAAAGCTAGCCAA 59.796 47.619 24.34 0.00 0.00 4.52
1055 1095 2.632377 TCGAAAGCTAGCCAATCAAGG 58.368 47.619 12.13 0.00 0.00 3.61
1184 1228 4.974721 CCGGGCAAGGTGCTGGTT 62.975 66.667 0.00 0.00 44.28 3.67
1210 1254 4.803426 GAGCGGCGAGGTGGTGAG 62.803 72.222 12.98 0.00 0.00 3.51
1419 1470 1.079819 GACGCCTGAGTAGCTTGCA 60.080 57.895 0.00 0.00 0.00 4.08
1425 1476 2.842457 CCTGAGTAGCTTGCATGCATA 58.158 47.619 23.37 8.45 34.99 3.14
1457 1508 3.625764 TGTAATCTACCACCGTACCGTAC 59.374 47.826 0.00 0.00 0.00 3.67
1475 1526 1.906757 ACGTTTGTGTTGCATGTGTG 58.093 45.000 0.00 0.00 0.00 3.82
1476 1527 1.470494 ACGTTTGTGTTGCATGTGTGA 59.530 42.857 0.00 0.00 0.00 3.58
1536 1587 3.058160 GCTTGCCGGTCTGCATGT 61.058 61.111 1.90 0.00 41.70 3.21
1544 1595 2.201732 CCGGTCTGCATGTGTGTATAC 58.798 52.381 0.00 0.00 0.00 1.47
1569 1620 0.543410 TAAGGCTCCGTCAACAGGGA 60.543 55.000 0.00 0.00 35.21 4.20
1640 1691 3.367395 GGTTTTGCTATTTCTGAGGTGCC 60.367 47.826 0.00 0.00 0.00 5.01
1656 1707 4.842574 AGGTGCCTGAAATTTTGTTTTGT 58.157 34.783 0.00 0.00 0.00 2.83
1657 1708 4.635324 AGGTGCCTGAAATTTTGTTTTGTG 59.365 37.500 0.00 0.00 0.00 3.33
1674 1725 8.062065 TGTTTTGTGTCAGTTAATTTTCTCCT 57.938 30.769 0.00 0.00 0.00 3.69
1716 1767 4.268359 GGACCTCGTAGGAGAAGAACTAA 58.732 47.826 13.99 0.00 43.27 2.24
1730 1781 2.509964 AGAACTAACCCCACCATCCATC 59.490 50.000 0.00 0.00 0.00 3.51
1733 1784 3.318313 ACTAACCCCACCATCCATCTAG 58.682 50.000 0.00 0.00 0.00 2.43
1744 1795 3.327172 CCATCCATCTAGAGTGAAGCCAT 59.673 47.826 0.00 0.00 0.00 4.40
1776 1850 7.445945 GCAACTCCATTATCTATCTTAGTGGT 58.554 38.462 0.00 0.00 30.66 4.16
1785 1859 0.120377 ATCTTAGTGGTGGGGGTGGA 59.880 55.000 0.00 0.00 0.00 4.02
1965 2040 2.223805 CGACGGTTGATGGATCAGATCA 60.224 50.000 12.66 0.00 38.19 2.92
1981 2056 2.364970 AGATCATGGCTCGAGGAAGAAG 59.635 50.000 15.58 0.00 0.00 2.85
1983 2058 0.813210 CATGGCTCGAGGAAGAAGGC 60.813 60.000 15.58 0.00 0.00 4.35
2014 2089 1.649321 AGAAGATGACCTGTGAGCCA 58.351 50.000 0.00 0.00 0.00 4.75
2021 2096 3.548745 TGACCTGTGAGCCATTAGATG 57.451 47.619 0.00 0.00 0.00 2.90
2022 2097 3.106827 TGACCTGTGAGCCATTAGATGA 58.893 45.455 0.00 0.00 0.00 2.92
2061 2136 1.603802 ACAAGGTGACTGATGCAAACG 59.396 47.619 0.00 0.00 42.68 3.60
2089 2164 3.857052 TGAGGCACCTAATGTTTAGACG 58.143 45.455 0.00 0.00 0.00 4.18
2108 2183 1.876416 CGCTCCCTTGTTTCTTTCCGA 60.876 52.381 0.00 0.00 0.00 4.55
2154 2229 5.522315 TTGTCAAATATTACCCCTCACCA 57.478 39.130 0.00 0.00 0.00 4.17
2174 2249 5.314923 CCACCAATGGTAAGTGAAGAATG 57.685 43.478 3.85 0.00 41.64 2.67
2221 2297 3.087031 CTCAAATGCTCCTGGTGTGAAT 58.913 45.455 0.00 0.00 0.00 2.57
2225 2301 4.307032 AATGCTCCTGGTGTGAATAGTT 57.693 40.909 0.00 0.00 0.00 2.24
2233 2309 7.067494 GCTCCTGGTGTGAATAGTTAAATTCAT 59.933 37.037 5.99 0.00 45.13 2.57
2290 2366 5.368256 TTTTGTTGTGCATGCAAAGTTTT 57.632 30.435 24.58 0.00 34.25 2.43
2301 2377 5.425398 CATGCAAAGTTTTGTCACGAAATG 58.575 37.500 6.48 0.00 40.24 2.32
2313 2389 3.684908 TCACGAAATGACATTGGTGGAT 58.315 40.909 22.52 1.26 38.89 3.41
2359 2435 2.829003 TCTAGTGCGCGGGAGGAG 60.829 66.667 8.83 0.00 0.00 3.69
2394 2470 3.181434 TGCCTGACCCAGTAAAACTTGAT 60.181 43.478 0.00 0.00 0.00 2.57
2423 2499 0.895559 AAGAAGCAAAAGCGGAGGGG 60.896 55.000 0.00 0.00 0.00 4.79
2424 2500 2.991540 AAGCAAAAGCGGAGGGGC 60.992 61.111 0.00 0.00 0.00 5.80
2455 2531 4.410400 CACGGGAGGAGGTTGCCC 62.410 72.222 0.00 0.00 38.53 5.36
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.470888 CCTCCGGTGCAGTAGGGG 61.471 72.222 0.00 0.00 0.00 4.79
10 11 0.921896 TAGTAGTAGGCACCTCCGGT 59.078 55.000 0.00 0.00 40.77 5.28
11 12 1.316651 GTAGTAGTAGGCACCTCCGG 58.683 60.000 0.00 0.00 40.77 5.14
12 13 0.942962 CGTAGTAGTAGGCACCTCCG 59.057 60.000 0.00 0.00 40.77 4.63
13 14 1.674962 CACGTAGTAGTAGGCACCTCC 59.325 57.143 0.00 0.00 41.61 4.30
14 15 1.065251 GCACGTAGTAGTAGGCACCTC 59.935 57.143 0.00 0.00 41.61 3.85
15 16 1.101331 GCACGTAGTAGTAGGCACCT 58.899 55.000 0.00 0.00 41.61 4.00
16 17 1.101331 AGCACGTAGTAGTAGGCACC 58.899 55.000 0.00 0.00 41.61 5.01
17 18 1.798079 GCAGCACGTAGTAGTAGGCAC 60.798 57.143 0.00 0.00 41.61 5.01
18 19 0.454600 GCAGCACGTAGTAGTAGGCA 59.545 55.000 0.00 0.00 41.61 4.75
19 20 0.248949 GGCAGCACGTAGTAGTAGGC 60.249 60.000 0.00 0.00 41.61 3.93
20 21 0.384669 GGGCAGCACGTAGTAGTAGG 59.615 60.000 0.00 0.00 41.61 3.18
21 22 0.029035 CGGGCAGCACGTAGTAGTAG 59.971 60.000 9.56 0.00 41.61 2.57
22 23 2.100846 CGGGCAGCACGTAGTAGTA 58.899 57.895 9.56 0.00 41.61 1.82
23 24 2.882876 CGGGCAGCACGTAGTAGT 59.117 61.111 9.56 0.00 41.61 2.73
34 35 2.887568 GTCGTCATCAGCGGGCAG 60.888 66.667 0.00 0.00 0.00 4.85
35 36 4.451150 GGTCGTCATCAGCGGGCA 62.451 66.667 0.00 0.00 0.00 5.36
36 37 2.685387 CTAGGTCGTCATCAGCGGGC 62.685 65.000 0.00 0.00 0.00 6.13
37 38 1.101635 TCTAGGTCGTCATCAGCGGG 61.102 60.000 0.00 0.00 0.00 6.13
38 39 0.309302 CTCTAGGTCGTCATCAGCGG 59.691 60.000 0.00 0.00 0.00 5.52
39 40 1.018148 ACTCTAGGTCGTCATCAGCG 58.982 55.000 0.00 0.00 0.00 5.18
40 41 3.207778 ACTACTCTAGGTCGTCATCAGC 58.792 50.000 0.00 0.00 0.00 4.26
41 42 5.821516 AAACTACTCTAGGTCGTCATCAG 57.178 43.478 0.00 0.00 0.00 2.90
42 43 5.821470 CCTAAACTACTCTAGGTCGTCATCA 59.179 44.000 0.00 0.00 31.61 3.07
43 44 6.054295 TCCTAAACTACTCTAGGTCGTCATC 58.946 44.000 0.00 0.00 36.76 2.92
44 45 5.999044 TCCTAAACTACTCTAGGTCGTCAT 58.001 41.667 0.00 0.00 36.76 3.06
45 46 5.426504 CTCCTAAACTACTCTAGGTCGTCA 58.573 45.833 0.00 0.00 36.76 4.35
46 47 4.815846 CCTCCTAAACTACTCTAGGTCGTC 59.184 50.000 0.00 0.00 36.76 4.20
47 48 4.472833 TCCTCCTAAACTACTCTAGGTCGT 59.527 45.833 0.00 0.00 36.76 4.34
48 49 5.033589 TCCTCCTAAACTACTCTAGGTCG 57.966 47.826 0.00 0.00 36.76 4.79
49 50 6.005823 GGATCCTCCTAAACTACTCTAGGTC 58.994 48.000 3.84 0.00 36.76 3.85
50 51 5.162958 GGGATCCTCCTAAACTACTCTAGGT 60.163 48.000 12.58 0.00 36.57 3.08
51 52 5.162969 TGGGATCCTCCTAAACTACTCTAGG 60.163 48.000 12.58 0.00 36.57 3.02
52 53 5.954757 TGGGATCCTCCTAAACTACTCTAG 58.045 45.833 12.58 0.00 36.57 2.43
53 54 5.162969 CCTGGGATCCTCCTAAACTACTCTA 60.163 48.000 12.58 0.00 36.57 2.43
54 55 4.388118 CCTGGGATCCTCCTAAACTACTCT 60.388 50.000 12.58 0.00 36.57 3.24
55 56 3.898741 CCTGGGATCCTCCTAAACTACTC 59.101 52.174 12.58 0.00 36.57 2.59
56 57 3.930035 CCTGGGATCCTCCTAAACTACT 58.070 50.000 12.58 0.00 36.57 2.57
57 58 2.369203 GCCTGGGATCCTCCTAAACTAC 59.631 54.545 12.58 0.00 36.57 2.73
58 59 2.022428 TGCCTGGGATCCTCCTAAACTA 60.022 50.000 12.58 0.00 36.57 2.24
59 60 1.274416 TGCCTGGGATCCTCCTAAACT 60.274 52.381 12.58 0.00 36.57 2.66
60 61 1.141858 CTGCCTGGGATCCTCCTAAAC 59.858 57.143 12.58 0.00 36.57 2.01
61 62 1.511613 CTGCCTGGGATCCTCCTAAA 58.488 55.000 12.58 0.00 36.57 1.85
62 63 0.400525 CCTGCCTGGGATCCTCCTAA 60.401 60.000 12.58 0.00 36.57 2.69
63 64 1.237163 CCTGCCTGGGATCCTCCTA 59.763 63.158 12.58 0.00 36.57 2.94
64 65 2.040043 CCTGCCTGGGATCCTCCT 60.040 66.667 12.58 0.00 36.57 3.69
65 66 2.040464 TCCTGCCTGGGATCCTCC 60.040 66.667 12.58 0.00 36.20 4.30
66 67 2.146061 CCTCCTGCCTGGGATCCTC 61.146 68.421 12.58 2.25 34.56 3.71
67 68 2.040043 CCTCCTGCCTGGGATCCT 60.040 66.667 12.58 0.00 34.56 3.24
68 69 3.883549 GCCTCCTGCCTGGGATCC 61.884 72.222 1.92 1.92 34.56 3.36
89 90 2.608261 GGGATACAGATCGAAAGAGGCG 60.608 54.545 0.00 0.00 41.83 5.52
90 91 2.365617 TGGGATACAGATCGAAAGAGGC 59.634 50.000 0.00 0.00 41.83 4.70
103 104 2.355716 GGCTAGCACAAACTGGGATACA 60.356 50.000 18.24 0.00 39.74 2.29
104 105 2.092914 AGGCTAGCACAAACTGGGATAC 60.093 50.000 18.24 0.00 0.00 2.24
105 106 2.196595 AGGCTAGCACAAACTGGGATA 58.803 47.619 18.24 0.00 0.00 2.59
106 107 0.995024 AGGCTAGCACAAACTGGGAT 59.005 50.000 18.24 0.00 0.00 3.85
107 108 0.771127 AAGGCTAGCACAAACTGGGA 59.229 50.000 18.24 0.00 0.00 4.37
108 109 1.168714 GAAGGCTAGCACAAACTGGG 58.831 55.000 18.24 0.00 0.00 4.45
109 110 2.191128 AGAAGGCTAGCACAAACTGG 57.809 50.000 18.24 0.00 0.00 4.00
110 111 4.997395 TCTTAAGAAGGCTAGCACAAACTG 59.003 41.667 18.24 0.18 0.00 3.16
111 112 4.998033 GTCTTAAGAAGGCTAGCACAAACT 59.002 41.667 18.24 0.14 0.00 2.66
112 113 4.755123 TGTCTTAAGAAGGCTAGCACAAAC 59.245 41.667 18.24 0.00 33.26 2.93
113 114 4.968259 TGTCTTAAGAAGGCTAGCACAAA 58.032 39.130 18.24 5.49 33.26 2.83
114 115 4.617253 TGTCTTAAGAAGGCTAGCACAA 57.383 40.909 18.24 0.00 33.26 3.33
115 116 4.617253 TTGTCTTAAGAAGGCTAGCACA 57.383 40.909 18.24 5.83 33.26 4.57
116 117 4.998033 AGTTTGTCTTAAGAAGGCTAGCAC 59.002 41.667 18.24 6.06 33.26 4.40
117 118 5.228945 AGTTTGTCTTAAGAAGGCTAGCA 57.771 39.130 18.24 0.00 33.26 3.49
118 119 5.470437 ACAAGTTTGTCTTAAGAAGGCTAGC 59.530 40.000 6.78 6.04 36.50 3.42
119 120 7.497925 AACAAGTTTGTCTTAAGAAGGCTAG 57.502 36.000 6.78 0.00 41.31 3.42
120 121 7.875327 AAACAAGTTTGTCTTAAGAAGGCTA 57.125 32.000 6.78 0.00 41.31 3.93
121 122 6.775594 AAACAAGTTTGTCTTAAGAAGGCT 57.224 33.333 6.78 0.81 41.31 4.58
122 123 8.188799 AGTTAAACAAGTTTGTCTTAAGAAGGC 58.811 33.333 6.78 0.00 41.31 4.35
131 132 9.174166 ACAGACATAAGTTAAACAAGTTTGTCT 57.826 29.630 8.37 8.07 41.31 3.41
136 137 9.826574 TGAGTACAGACATAAGTTAAACAAGTT 57.173 29.630 0.00 0.00 0.00 2.66
137 138 9.477484 CTGAGTACAGACATAAGTTAAACAAGT 57.523 33.333 0.00 0.00 46.03 3.16
138 139 9.692749 TCTGAGTACAGACATAAGTTAAACAAG 57.307 33.333 0.00 0.00 46.55 3.16
154 155 5.233050 CGGAAGCAACAATATCTGAGTACAG 59.767 44.000 0.00 0.00 44.66 2.74
155 156 5.109210 CGGAAGCAACAATATCTGAGTACA 58.891 41.667 0.00 0.00 0.00 2.90
156 157 5.643339 CGGAAGCAACAATATCTGAGTAC 57.357 43.478 0.00 0.00 0.00 2.73
173 174 1.671328 TCATAGACGAGTCAGCGGAAG 59.329 52.381 5.99 0.00 35.12 3.46
174 175 1.746470 TCATAGACGAGTCAGCGGAA 58.254 50.000 5.99 0.00 35.12 4.30
175 176 1.874231 GATCATAGACGAGTCAGCGGA 59.126 52.381 5.99 0.00 35.12 5.54
176 177 1.399087 CGATCATAGACGAGTCAGCGG 60.399 57.143 5.99 0.00 35.12 5.52
177 178 1.527311 TCGATCATAGACGAGTCAGCG 59.473 52.381 5.99 0.00 34.49 5.18
178 179 3.181826 CTCGATCATAGACGAGTCAGC 57.818 52.381 5.99 0.00 46.90 4.26
184 185 2.683362 ACAAGTGCTCGATCATAGACGA 59.317 45.455 0.00 0.00 37.03 4.20
185 186 3.071786 ACAAGTGCTCGATCATAGACG 57.928 47.619 0.00 0.00 0.00 4.18
186 187 5.340932 CGAATACAAGTGCTCGATCATAGAC 59.659 44.000 0.00 0.00 33.13 2.59
187 188 5.238650 TCGAATACAAGTGCTCGATCATAGA 59.761 40.000 0.00 0.00 35.52 1.98
188 189 5.452777 TCGAATACAAGTGCTCGATCATAG 58.547 41.667 0.00 0.00 35.52 2.23
189 190 5.432885 TCGAATACAAGTGCTCGATCATA 57.567 39.130 0.00 0.00 35.52 2.15
190 191 4.294232 CTCGAATACAAGTGCTCGATCAT 58.706 43.478 8.31 0.00 39.39 2.45
191 192 3.695816 CTCGAATACAAGTGCTCGATCA 58.304 45.455 8.31 0.00 39.39 2.92
192 193 2.469516 GCTCGAATACAAGTGCTCGATC 59.530 50.000 8.31 2.80 39.39 3.69
193 194 2.464865 GCTCGAATACAAGTGCTCGAT 58.535 47.619 8.31 0.00 39.39 3.59
194 195 1.469251 GGCTCGAATACAAGTGCTCGA 60.469 52.381 7.80 7.80 37.95 4.04
195 196 0.924090 GGCTCGAATACAAGTGCTCG 59.076 55.000 0.00 0.00 0.00 5.03
196 197 1.134670 AGGGCTCGAATACAAGTGCTC 60.135 52.381 0.00 0.00 0.00 4.26
197 198 0.905357 AGGGCTCGAATACAAGTGCT 59.095 50.000 0.00 0.00 0.00 4.40
198 199 1.291132 GAGGGCTCGAATACAAGTGC 58.709 55.000 0.00 0.00 0.00 4.40
222 223 2.821969 GCATCATAATACAAGCCAGGGG 59.178 50.000 0.00 0.00 0.00 4.79
223 224 3.759581 AGCATCATAATACAAGCCAGGG 58.240 45.455 0.00 0.00 0.00 4.45
224 225 4.581824 ACAAGCATCATAATACAAGCCAGG 59.418 41.667 0.00 0.00 0.00 4.45
225 226 5.762825 ACAAGCATCATAATACAAGCCAG 57.237 39.130 0.00 0.00 0.00 4.85
226 227 6.997476 TCATACAAGCATCATAATACAAGCCA 59.003 34.615 0.00 0.00 0.00 4.75
227 228 7.173907 AGTCATACAAGCATCATAATACAAGCC 59.826 37.037 0.00 0.00 0.00 4.35
228 229 8.092521 AGTCATACAAGCATCATAATACAAGC 57.907 34.615 0.00 0.00 0.00 4.01
260 261 9.337396 AGATATCACAACACAACTCTAAAAACA 57.663 29.630 5.32 0.00 0.00 2.83
264 265 8.999431 GGAAAGATATCACAACACAACTCTAAA 58.001 33.333 5.32 0.00 0.00 1.85
265 266 7.330946 CGGAAAGATATCACAACACAACTCTAA 59.669 37.037 5.32 0.00 0.00 2.10
266 267 6.811665 CGGAAAGATATCACAACACAACTCTA 59.188 38.462 5.32 0.00 0.00 2.43
267 268 5.639506 CGGAAAGATATCACAACACAACTCT 59.360 40.000 5.32 0.00 0.00 3.24
268 269 5.408604 ACGGAAAGATATCACAACACAACTC 59.591 40.000 5.32 0.00 0.00 3.01
269 270 5.179368 CACGGAAAGATATCACAACACAACT 59.821 40.000 5.32 0.00 0.00 3.16
270 271 5.178623 TCACGGAAAGATATCACAACACAAC 59.821 40.000 5.32 0.00 0.00 3.32
271 272 5.301555 TCACGGAAAGATATCACAACACAA 58.698 37.500 5.32 0.00 0.00 3.33
272 273 4.888917 TCACGGAAAGATATCACAACACA 58.111 39.130 5.32 0.00 0.00 3.72
273 274 4.929808 ACTCACGGAAAGATATCACAACAC 59.070 41.667 5.32 0.00 0.00 3.32
274 275 5.147330 ACTCACGGAAAGATATCACAACA 57.853 39.130 5.32 0.00 0.00 3.33
275 276 4.567159 GGACTCACGGAAAGATATCACAAC 59.433 45.833 5.32 0.00 0.00 3.32
276 277 4.382685 GGGACTCACGGAAAGATATCACAA 60.383 45.833 5.32 0.00 0.00 3.33
277 278 3.132289 GGGACTCACGGAAAGATATCACA 59.868 47.826 5.32 0.00 0.00 3.58
278 279 3.385111 AGGGACTCACGGAAAGATATCAC 59.615 47.826 5.32 0.00 0.00 3.06
279 280 3.384789 CAGGGACTCACGGAAAGATATCA 59.615 47.826 5.32 0.00 34.60 2.15
280 281 3.637229 TCAGGGACTCACGGAAAGATATC 59.363 47.826 0.00 0.00 34.60 1.63
281 282 3.643237 TCAGGGACTCACGGAAAGATAT 58.357 45.455 0.00 0.00 34.60 1.63
282 283 3.095912 TCAGGGACTCACGGAAAGATA 57.904 47.619 0.00 0.00 34.60 1.98
283 284 1.938585 TCAGGGACTCACGGAAAGAT 58.061 50.000 0.00 0.00 34.60 2.40
284 285 1.825474 GATCAGGGACTCACGGAAAGA 59.175 52.381 0.00 0.00 34.60 2.52
285 286 1.827969 AGATCAGGGACTCACGGAAAG 59.172 52.381 0.00 0.00 34.60 2.62
286 287 1.938585 AGATCAGGGACTCACGGAAA 58.061 50.000 0.00 0.00 34.60 3.13
287 288 1.550524 CAAGATCAGGGACTCACGGAA 59.449 52.381 0.00 0.00 34.60 4.30
288 289 1.186200 CAAGATCAGGGACTCACGGA 58.814 55.000 0.00 0.00 34.60 4.69
289 290 1.186200 TCAAGATCAGGGACTCACGG 58.814 55.000 0.00 0.00 34.60 4.94
290 291 2.542618 CGATCAAGATCAGGGACTCACG 60.543 54.545 10.39 0.00 34.60 4.35
291 292 2.428890 ACGATCAAGATCAGGGACTCAC 59.571 50.000 10.39 0.00 34.60 3.51
292 293 2.739943 ACGATCAAGATCAGGGACTCA 58.260 47.619 10.39 0.00 34.60 3.41
293 294 3.632604 TGTACGATCAAGATCAGGGACTC 59.367 47.826 10.39 0.00 34.60 3.36
294 295 3.381908 GTGTACGATCAAGATCAGGGACT 59.618 47.826 10.39 0.00 43.88 3.85
295 296 3.707793 GTGTACGATCAAGATCAGGGAC 58.292 50.000 10.39 2.84 37.69 4.46
296 297 2.357952 CGTGTACGATCAAGATCAGGGA 59.642 50.000 10.39 0.00 43.02 4.20
297 298 2.099263 ACGTGTACGATCAAGATCAGGG 59.901 50.000 11.79 0.00 43.02 4.45
298 299 3.422417 ACGTGTACGATCAAGATCAGG 57.578 47.619 11.79 0.51 43.02 3.86
299 300 4.490959 GCAAACGTGTACGATCAAGATCAG 60.491 45.833 11.79 5.82 43.02 2.90
300 301 3.366724 GCAAACGTGTACGATCAAGATCA 59.633 43.478 11.79 0.00 43.02 2.92
301 302 3.366724 TGCAAACGTGTACGATCAAGATC 59.633 43.478 11.79 0.00 43.02 2.75
302 303 3.322369 TGCAAACGTGTACGATCAAGAT 58.678 40.909 11.79 0.00 43.02 2.40
303 304 2.745102 TGCAAACGTGTACGATCAAGA 58.255 42.857 11.79 0.00 43.02 3.02
304 305 3.407252 CATGCAAACGTGTACGATCAAG 58.593 45.455 11.79 0.00 43.02 3.02
305 306 2.412195 GCATGCAAACGTGTACGATCAA 60.412 45.455 14.21 0.00 43.02 2.57
306 307 1.127766 GCATGCAAACGTGTACGATCA 59.872 47.619 14.21 3.74 43.02 2.92
307 308 1.127766 TGCATGCAAACGTGTACGATC 59.872 47.619 20.30 0.00 43.02 3.69
308 309 1.152510 TGCATGCAAACGTGTACGAT 58.847 45.000 20.30 0.00 43.02 3.73
309 310 1.136113 CATGCATGCAAACGTGTACGA 60.136 47.619 26.68 0.00 43.02 3.43
310 311 1.136113 TCATGCATGCAAACGTGTACG 60.136 47.619 26.68 2.43 46.33 3.67
311 312 2.610219 TCATGCATGCAAACGTGTAC 57.390 45.000 26.68 0.00 35.09 2.90
312 313 3.846423 AATCATGCATGCAAACGTGTA 57.154 38.095 26.68 8.78 35.09 2.90
313 314 2.728690 AATCATGCATGCAAACGTGT 57.271 40.000 26.68 3.45 35.09 4.49
314 315 3.544682 CACTAATCATGCATGCAAACGTG 59.455 43.478 26.68 18.39 35.78 4.49
315 316 3.191162 ACACTAATCATGCATGCAAACGT 59.809 39.130 26.68 13.13 0.00 3.99
316 317 3.761657 ACACTAATCATGCATGCAAACG 58.238 40.909 26.68 16.18 0.00 3.60
317 318 4.730042 CGTACACTAATCATGCATGCAAAC 59.270 41.667 26.68 8.81 0.00 2.93
318 319 4.633565 TCGTACACTAATCATGCATGCAAA 59.366 37.500 26.68 16.55 0.00 3.68
319 320 4.187694 TCGTACACTAATCATGCATGCAA 58.812 39.130 26.68 9.94 0.00 4.08
320 321 3.791245 TCGTACACTAATCATGCATGCA 58.209 40.909 25.04 25.04 0.00 3.96
321 322 4.997905 ATCGTACACTAATCATGCATGC 57.002 40.909 22.25 11.82 0.00 4.06
322 323 6.529463 TCAATCGTACACTAATCATGCATG 57.471 37.500 21.07 21.07 0.00 4.06
323 324 7.734924 ATTCAATCGTACACTAATCATGCAT 57.265 32.000 0.00 0.00 0.00 3.96
324 325 7.177498 GATTCAATCGTACACTAATCATGCA 57.823 36.000 0.00 0.00 0.00 3.96
340 341 1.153249 TGACGCCCCCGATTCAATC 60.153 57.895 0.00 0.00 38.29 2.67
341 342 1.451387 GTGACGCCCCCGATTCAAT 60.451 57.895 0.00 0.00 38.29 2.57
342 343 2.046700 GTGACGCCCCCGATTCAA 60.047 61.111 0.00 0.00 38.29 2.69
343 344 3.309436 CTGTGACGCCCCCGATTCA 62.309 63.158 0.00 0.00 38.29 2.57
344 345 2.511600 CTGTGACGCCCCCGATTC 60.512 66.667 0.00 0.00 38.29 2.52
345 346 4.778143 GCTGTGACGCCCCCGATT 62.778 66.667 0.00 0.00 38.29 3.34
354 355 3.720193 GTGCTGCCAGCTGTGACG 61.720 66.667 18.96 0.00 42.97 4.35
355 356 2.592574 TGTGCTGCCAGCTGTGAC 60.593 61.111 18.96 8.10 42.97 3.67
356 357 2.281276 CTGTGCTGCCAGCTGTGA 60.281 61.111 18.96 0.00 42.97 3.58
357 358 1.853114 CTTCTGTGCTGCCAGCTGTG 61.853 60.000 18.96 7.58 42.97 3.66
358 359 1.600076 CTTCTGTGCTGCCAGCTGT 60.600 57.895 18.96 0.00 42.97 4.40
359 360 0.677098 ATCTTCTGTGCTGCCAGCTG 60.677 55.000 18.96 6.78 42.97 4.24
360 361 0.392729 GATCTTCTGTGCTGCCAGCT 60.393 55.000 18.96 0.00 42.97 4.24
361 362 1.703438 CGATCTTCTGTGCTGCCAGC 61.703 60.000 10.45 10.45 42.82 4.85
362 363 1.703438 GCGATCTTCTGTGCTGCCAG 61.703 60.000 10.65 10.65 0.00 4.85
363 364 1.742880 GCGATCTTCTGTGCTGCCA 60.743 57.895 0.00 0.00 0.00 4.92
364 365 2.806856 CGCGATCTTCTGTGCTGCC 61.807 63.158 0.00 0.00 0.00 4.85
365 366 2.699809 CGCGATCTTCTGTGCTGC 59.300 61.111 0.00 0.00 0.00 5.25
366 367 0.529337 ATCCGCGATCTTCTGTGCTG 60.529 55.000 8.23 0.00 0.00 4.41
367 368 0.249238 GATCCGCGATCTTCTGTGCT 60.249 55.000 8.23 0.00 36.27 4.40
453 454 3.718210 GACCTGGATGCGTCGGTCC 62.718 68.421 17.70 3.94 39.96 4.46
455 456 0.755698 ATAGACCTGGATGCGTCGGT 60.756 55.000 0.00 5.29 34.10 4.69
461 462 2.474816 GTTCACGATAGACCTGGATGC 58.525 52.381 0.00 0.00 41.38 3.91
493 494 0.030235 CCATGGCATGAACATCGCTG 59.970 55.000 28.43 4.65 0.00 5.18
494 495 0.107066 TCCATGGCATGAACATCGCT 60.107 50.000 28.43 0.00 0.00 4.93
499 500 0.392863 CGGAGTCCATGGCATGAACA 60.393 55.000 28.43 9.21 0.00 3.18
546 547 0.752658 CATGGGAGACGAGGTGCATA 59.247 55.000 0.00 0.00 0.00 3.14
551 552 2.100989 GTAAGACATGGGAGACGAGGT 58.899 52.381 0.00 0.00 35.15 3.85
583 584 2.419297 GGAAGTGAAGATGCAGGTCGAT 60.419 50.000 0.00 0.00 0.00 3.59
619 620 0.904865 TCACCTGTCCGGCATCTTCT 60.905 55.000 0.00 0.00 35.61 2.85
621 622 0.400213 TTTCACCTGTCCGGCATCTT 59.600 50.000 0.00 0.00 35.61 2.40
623 624 2.213499 CTATTTCACCTGTCCGGCATC 58.787 52.381 0.00 0.00 35.61 3.91
625 626 0.981183 ACTATTTCACCTGTCCGGCA 59.019 50.000 0.00 0.00 35.61 5.69
628 629 4.159879 AGTCCTTACTATTTCACCTGTCCG 59.840 45.833 0.00 0.00 32.84 4.79
634 635 6.708285 TCTTCCAAGTCCTTACTATTTCACC 58.292 40.000 0.00 0.00 33.75 4.02
781 786 8.832521 TCACAATCGTAGTTTGAACAAATAACT 58.167 29.630 3.34 0.00 36.23 2.24
827 832 5.533154 GGACTCGGTCATCCTATCCTATATG 59.467 48.000 6.41 0.00 33.68 1.78
938 946 0.460311 GGGATGAGATGACGTCGGTT 59.540 55.000 11.62 0.00 0.00 4.44
986 994 1.230314 AAAGGGGAGGGAAGAGGGG 60.230 63.158 0.00 0.00 0.00 4.79
1010 1019 5.865506 CGTCAACGGTGATCGATATTCGAC 61.866 50.000 6.36 8.83 43.07 4.20
1011 1020 3.847105 CGTCAACGGTGATCGATATTCGA 60.847 47.826 6.36 1.70 43.82 3.71
1012 1021 2.400735 CGTCAACGGTGATCGATATTCG 59.599 50.000 6.36 0.00 42.43 3.34
1013 1022 3.624900 TCGTCAACGGTGATCGATATTC 58.375 45.455 19.42 0.00 42.43 1.75
1014 1023 3.703286 TCGTCAACGGTGATCGATATT 57.297 42.857 19.42 0.00 42.43 1.28
1015 1024 3.822996 GATCGTCAACGGTGATCGATAT 58.177 45.455 28.33 16.52 42.61 1.63
1016 1025 3.263602 GATCGTCAACGGTGATCGATA 57.736 47.619 28.33 12.60 42.61 2.92
1027 1036 1.588861 GGCTAGCTTTCGATCGTCAAC 59.411 52.381 15.72 4.00 0.00 3.18
1031 1040 2.159099 TGATTGGCTAGCTTTCGATCGT 60.159 45.455 15.72 0.00 0.00 3.73
1210 1254 0.099082 CTCCAGAACCTCGTACGAGC 59.901 60.000 34.54 22.92 40.69 5.03
1425 1476 4.324267 GTGGTAGATTACACAAAGCAGGT 58.676 43.478 0.00 0.00 37.54 4.00
1457 1508 2.110990 CTCACACATGCAACACAAACG 58.889 47.619 0.00 0.00 0.00 3.60
1461 1512 1.799994 CGATCTCACACATGCAACACA 59.200 47.619 0.00 0.00 0.00 3.72
1527 1578 4.123497 TGAGGTATACACACATGCAGAC 57.877 45.455 5.01 0.00 0.00 3.51
1569 1620 0.037605 CAAACGAGTAGGCCGGAGTT 60.038 55.000 5.05 0.00 0.00 3.01
1656 1707 7.445402 CAGGAAGAAGGAGAAAATTAACTGACA 59.555 37.037 0.00 0.00 0.00 3.58
1657 1708 7.574030 GCAGGAAGAAGGAGAAAATTAACTGAC 60.574 40.741 0.00 0.00 0.00 3.51
1716 1767 1.295292 ACTCTAGATGGATGGTGGGGT 59.705 52.381 0.00 0.00 0.00 4.95
1730 1781 1.139853 GGGACCATGGCTTCACTCTAG 59.860 57.143 13.04 0.00 0.00 2.43
1733 1784 1.450312 CGGGACCATGGCTTCACTC 60.450 63.158 13.04 0.00 0.00 3.51
1744 1795 0.916086 ATAATGGAGTTGCGGGACCA 59.084 50.000 0.00 0.00 36.83 4.02
1776 1850 1.517538 ATGCAATTCCTCCACCCCCA 61.518 55.000 0.00 0.00 0.00 4.96
1785 1859 2.026641 CAACGATCCCATGCAATTCCT 58.973 47.619 0.00 0.00 0.00 3.36
1948 2023 2.818432 GCCATGATCTGATCCATCAACC 59.182 50.000 14.71 0.00 36.18 3.77
1965 2040 1.524482 GCCTTCTTCCTCGAGCCAT 59.476 57.895 6.99 0.00 0.00 4.40
1981 2056 4.747605 GTCATCTTCTTCCTCTTAATCGCC 59.252 45.833 0.00 0.00 0.00 5.54
1983 2058 5.982516 CAGGTCATCTTCTTCCTCTTAATCG 59.017 44.000 0.00 0.00 0.00 3.34
2014 2089 2.361438 GACCGTCCGACCTTCATCTAAT 59.639 50.000 0.00 0.00 0.00 1.73
2021 2096 0.245539 TTCATGACCGTCCGACCTTC 59.754 55.000 0.00 0.00 0.00 3.46
2022 2097 0.682852 TTTCATGACCGTCCGACCTT 59.317 50.000 0.00 0.00 0.00 3.50
2069 2144 2.608090 GCGTCTAAACATTAGGTGCCTC 59.392 50.000 0.00 0.00 0.00 4.70
2075 2150 3.821421 AGGGAGCGTCTAAACATTAGG 57.179 47.619 0.00 0.00 0.00 2.69
2082 2157 3.764237 AGAAACAAGGGAGCGTCTAAA 57.236 42.857 0.00 0.00 0.00 1.85
2089 2164 1.535896 GTCGGAAAGAAACAAGGGAGC 59.464 52.381 0.00 0.00 0.00 4.70
2108 2183 4.295141 TGAAGGGTAATTTGATGACGGT 57.705 40.909 0.00 0.00 0.00 4.83
2154 2229 4.344104 CCCATTCTTCACTTACCATTGGT 58.656 43.478 13.94 13.94 40.16 3.67
2172 2247 2.635915 TGTAGAAACTTCACGTCCCCAT 59.364 45.455 0.00 0.00 0.00 4.00
2173 2248 2.040939 TGTAGAAACTTCACGTCCCCA 58.959 47.619 0.00 0.00 0.00 4.96
2174 2249 2.410939 GTGTAGAAACTTCACGTCCCC 58.589 52.381 0.00 0.00 0.00 4.81
2258 2334 5.678047 GCATGCACAACAAAAATTTCAGAAC 59.322 36.000 14.21 0.00 0.00 3.01
2268 2344 5.152097 CAAAACTTTGCATGCACAACAAAA 58.848 33.333 22.58 10.08 33.24 2.44
2365 2441 0.617413 ACTGGGTCAGGCAGAAGATG 59.383 55.000 0.00 0.00 35.51 2.90
2394 2470 0.321210 TTTGCTTCTTCGCCATCCGA 60.321 50.000 0.00 0.00 45.77 4.55


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.