>input_sequence_79020
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------------------------------------------------CCTTTGCACCGTCGAATATCGATCACCGTTGA
CGATCGA-----------------------------AAGCTAGC--CAATCAAGGCAAGCTGAAATAGCTAGG----TAG
CTAGCAAGCATGAGTGGCGTGTGGGTGTTTGAGGGCGGGATGGTGAGGCGGGCGGACAGCGAGGCGCCGGGCGCGGGCGG
GGCGGCGCGGCCGGGCAAGGTGCTGGTTCATGTGCCGAGCGGCGAGGTGGTGAGCTCGTACGAGGTTCTGGAGCGGCGGC
TGCGGGAGCTGGGGTGGGAGCGCTACCTCAACGACCCCTGCCTCCTCCAGTTCCACCAGCGCTCCACGGTGCACCTCATC
TCCGTCCCGCGCGACTTCGCCCGCCTCAAGCTCGTCCACATGCACGACGTCGTCGTCAAGACCCGCAACGTCTTCCAGGT
CCGCGACGCCTGAGTAGCTT-------GCATGCATACCTGCTTTGTGTAATCTACCACCGTACCGTACGTTTGTGTTGCA
TGTGT---------------------------------------------------------------------------
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>chr6A_1_TraesCS6A01G026700
CCCCTACTGCACCGGAGGTGCCTACTACTACGTGCTGCCCGCTGATGACGACCTAGAGTAGTTTAGGAGGATCCCAGGCA
GGAGGCCTGCGCCTCTTTCGATCTGTATCCCAGTTTGTGCTAGCCTTCTTAAGACAAACTTGTTTAACTTATGTCTGTAC
TCAGATATTGTTGCTTCCGCTGACTCGTCTATGATCGAGCACTTGTATTCGAGCCCTCGAGGCCCCTGGCTTGTATTATG
ATGCTTGTATGACTTATTTATGTTTTTAGAGTTGTGTTGTGATATCTTTCCGTGAGTCCCTGATCTTGATCGTACACGTT
TGCATGCATGATTAGTGTACGATTGAATCGGGGGCGTCACAGCTGGCAGCACAGAAGATCGCGGATCGGCACGTCGGCAG
CTCCATGTCGTTTACGTCGCCTGCACGGTTCGCACCTGGCCACAAGGACCACTGGACCGACGCATCCAGGTCTATCGTGA
ACCTCACCCCAACCAGCGATGTTCATGCCATGGACTCCGACGAGAAAGAGTTGGACATGGGAGACATATGCACCTCGTCT
CCCATGTCTTACTCTTTCTCGTCATCGACCTGCATCTTCACTTCCCGAGGCTCACAGCCAGAAGATGCCGGACAGGTGAA
ATAGTAAGGACTTGGAAGATGGACGCCGGCGAAGATTTAGACTCGGTTAACTGCCGGACACTTTTGATTAGCG----ATG
TCGAAAATGTAATGAATGTATTCCGGTTTAAATGGAAATTCATCCGGTTTGCAAACAAATCATCTAGTTATTTGTTCAAA
CTACGATTGTGATGTGTCCAGACGGATGGTGC-A--TATAGGATAGGATGACCGAGTCCGGTATCATGCATCCGCAGACG
AATAATGTGTCTGTTTCCGTTTTGGGGATAGAGATGCCCTAAGCAAAGCAGTGTGTCCATCCTCCAACCGACGTCATCTC
ATCCCATAGCCTTCGCCTCTATATAAGCTCTGCC-CCCTCTTCCCTCCCCTTTGCACCGTCGAATATCGATCACCGTTGA
CGATCGA-----------------------------AAGCTAGC--CAATCAAGGCAAGCTGAAATAGCTAGG----TAG
CTAGCAAGCATGAGTGGCGTGTGGGTGTTTGAGGGCGGGATGGTGAGGCGGGCGGACAGCGAGGCGCCGGGCGCGGGCGG
GGCGGCGCGGCCGGGCAAGGTGCTGGTTCATGTGCCGAGCGGCGAGGTGGTGAGCTCGTACGAGGTTCTGGAGCGGCGGC
TGCGGGAGCTGGGGTGGGAGCGCTACCTCAACGACCCCTGCCTCCTCCAGTTCCACCAGCGCTCCACGGTGCACCTCATC
TCCGTCCCGCGCGACTTCGCCCGCCTCAAGCTCGTCCACATGCACGACGTCGTCGTCAAGACCCGCAACGTCTTCCAGGT
CCGCGACGCCTGAGTAGCTT-------GCATGCATACCTGCTTTGTGTAATCTACCACCGTACCGTACGTTTGTGTTGCA
TGTGTGAGATCGAATTGCGAGGGAGTATATGTAATAGCGCGTGCGTGTGGCTTGCCGGTCTGCATGTGTGTATACCTCAA
TAAGGCTCCGTCAACAGGGAACTCCGGCCTACTCGTTTGGGACTTTGGGTTGTTTGAACTGTTTCTTCGGTTTTGCTATT
TCTGAGGTGCCTGAAATTTTGTTTTGTGTCAGTTAATTTTCTCCTTCTTCCTGCCCTCTTGGCCGGACCTCGTAGGAGAA
GAACTAACCCCACCATCCATCTAGAGTGAAGCCATGGTC-----------------------CCGCAACTCCATTATCTA
TCTTAGTGGTGGGGGTGGAGGAATTGCATGGGATCG-TTGAAGGTTTTCATCTGTGGTGCCGGGATTACAGGGATGCCGG
GGCGGTGACCAGCAATCGCAGTGGGGGGAGGTTGTGGGGAGGGTGGGGCGGCGTGGCGGTGCGCGTTAGCGCCCACCGGC
CGCGGGGGTGGATGCTGGCGACGGTTGATGGATCAGATCATGGCTCGAGGAAGAAGGCGATTAAGAGGAAGAAGATGACC
TGTGAGCCATTAGATGAAGGTCGGACGGTCATGAAACAAGGTGACTGATGCAAACGGTTTTTTGAGGCACCTAATGTTTA
GACGCTCCCTTGTTTCTTTCCGACCGTCATCAAATTACCCTTCAATTTGTCAAATATTACCCCTCACCACCAATGGTAAG
TGAAGAATGGGG-ACGTGAAGTTTCTACACCCGGGCTCAAATGCTCCTGGTGTGAATAGTTAAATTCATAAAATAGAAAA
TAAAATCAAAAAAGTTCTGAAATTTTTGTTGTGCATGCAAAGTTTTGTCACGAAATGACATTGGTGGATGATAAAAAAAC
AAAAACAAAAACGACGCTCTAGTGCGCGGGAGGAGGTTCCCATCTTCTGCCTGACCCAGTAAAACTTGATCGGATGGCGA
AGAAGCAAAAGCGGAGGGGCGAGGCCACTGGTGCACGGGAGGAGGTTGCCCAGCGGGAGGCTCCGGGGGC
>chr6B_362
GCTAGCG-------------------------------------------------------------------------
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------------------------------------------------GCACAGAAGATCGTGGATCGGCACGTCGACAG
CTCCATGTCGTTTGCGTCGCCTACATGGTTCGCACCTGGCCACAAGGACCACTAGGCCGACCCATCCACGTCTATCGTGA
ACCTCACCCCAACTGGCGACGTTCATGCCATGGACTCCGACGAGAAAGAGTTGGACATGGGAGACGGATGCGCCTCGTCT
CCCATGTCTTACTCTTTCTCGTCGTCGACCTGCATCTTCACTTCCCAAGGCTCACGGCCTAC-------------GTGAA
ATAGTAAGGACTTGGAAAATGGACGCCGGCGAAGATTTAGACTCGGTTAACTGCCGGACACTTTTGATTAGCCAACTATG
TCGAAAATGTAATGAATGTATTCCGGTTTAAATGGAAATTCATCCGGTTTGCAAACAAATCATCTGGTTATTTGTTGAAA
CTACGATTGTGATGTGTCCAGACGGATGGTTTTA--TATAGGATTGGATGACCGAGTCCGGTATCATGCATCCACAAACG
AATAATGTGTCTGTTTCCGTTTTGGGGATAGAGATGCCCTAGGCAAAGCAGTGTGCCCATCCTCCGACCGACGTCATTTC
ATCCCATAGCTTTCGCCTCTATATAAGCTCTGCTACCCTCTTCCATCCCCATTGCACC-------ATCGATCACCATTGC
CGATCGATACATCTAGCTAGCTATCAGCAAGAAGCCAAGCTAGCTATAGTCAAGTGAAGTCGGAATAGCTAGG----TAG
CTAGCAAGCATGAGTGGCGTGTGGGTGTTTGAGGGCGGGATGGTGAGGCGGGCGGACAGCGAGGCGCCGGGCGCGGGCGG
GGCGGCGCGGCCGGGCAAGGTGCTGGTGCATGTGCCGAGCGGCGAGGTGGTGACCTCGTACGAGGGTCTGGAGCGGCGGC
TGCGGGAGCTGGGGTGGGAGCGCTACCTCAACGACCCCTGCCTCCTCCAGTTCCACCAGCGCTCCACCGTGCACCTCATC
TCCGTCCCGCGCGACTTCACCCGCCTCAAGCTCGTCCACATGCACGACGTCGTCGTCAAGACCCGCAACGTCTTCCAGGT
CCGCGACGCCTGAGCTAGCCAACCATAGCTTGCATCCCTGCCTTGTGTAATCTA--------------------------
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>chr6D_370
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-------------------------------------------------CACAGAAGATCGCTGAAGGGTACATCGGTAG
CTCCATGTCGTTTGCGCCGCCCGCACGGTTCGCGCCGGGCCACAAGGAGCACCAGGCCGACCCATCCACGTCTATCGTGA
GTCTCACCCCAACTGGCGACGTTTAGGCCGTGGACTCCGACGAGGAAGAGTTGGACATGGGAGACAGATACGCCTCGTGT
CCCATGTCTTACTCTTTCTCGTCGGCGACCCGCATCTTCACTTCCAGATGCTCACGGCCGGCATACGCAGGACATGTGGA
ACACTAAGGACTTGGAAGACGGATGCCAGCGAAGATTTGGACTCGGTTAACTTCATGACACTTTTGATTAACGAACTATG
TCGAAAATGTAATGAATGTATTCCGGTTTACATGGAAAATCATCCAGCTTGCAAACAAATCATCTGTT--TTTGTTCAAA
CTACGAGTGAAATGTGTCCAGACCGATGGTGTATACTATATGATTGGATGGCCAAGTCCCGTATCATGCATCCGCAGACG
AATAATGTGTCTATTTCCGTTTTGGGGATAGAGATGCCCTAAGCAAAGTAGTGTGTCCATCCTCCGACCGACGTCATCTC
ATTCCATAGCCTTCGCCTCTATATAAGCTCTGC--CCCTCTCCCCTCCCCTTTGCACC-------ATCGATCACCACTGC
CGATCGC-----------------------------TGGCTCGC--TAGTCAAGTGAAGTTGGAATAGCTAGGTAGCTAG
CTAGCAAGCATGAGTGGCGTGTGGGTGTTTGAGGGCGGGATGGTGAGGCGGGCGGACAGCGAGGCGCCGGGCACGGGCGG
GGCGGCGCGGCCGGGCAAGGTGCTGGTGCATGTGCCGAGCGGCGAGGTGGTGACCTCGTACGAGGTTCTGGAGCGGCGGC
TGCGGGAGCTGGGGTGGGAGCGCTACCTCAACGACCCCTGCCTCCTCCAGTTCCACCAGCGCTCCACGGTGCACCTCATC
TCCGTCCCGCGCGACTTCGCCCGCCTCAAGCTCGTCCACATGCACGACGTCGTCGTCAAGACCCGCAACGTCTTCCAGGT
CCGCGACGCCTGAGTAGCTTC-----AGCTGGCATGCATGCTTTGTGTAATCTACCACCGTACCGTATGTTCGTGTTGCA
TGTGTTCGATCGAATTGCGAGGGAGTATATGTAATAGCGCGTGCGTGTGGCTTGCCGTTCTGCATGGGTGTATATCTCAA
TAAGGCTCCGTCAACAGGGGACTCCGGCCTACTCGTTTGGGACTTTGGGTTGTTTGAACTGTTTCTTCGGTTTTGCTATT
TCTGAGGTGCTTGAAATTTTGTTTTGCATCAGTTAATTTTCTCCCTCTTCCTGCCCTCTTGGCCGGACCTCGTAGGAGAA
GAACTAGCCCCACCATCCATATAAAGTGAAGCCACGGTCCCATTATCTATATTAGGGGGAAGCCGCAACTCCATTATCTA
TCTTAGTGGCGGGGGTGGGGGAATTGCATGGGATCGTTTGAAGGTTTTCATCTGTGGTGCCGGGATTACAGGGATGCCGG
GGCGGTGACCAGCAATCGCAGTGGGGGGAGGTTCTGGGGAGGGTGGGGCGGTGTGGCGGTGCGCGTTAGCGCCCACCGGC
CGCGGGGGTGGATGCTGGCGACAGTTGATGGATCAGATCGTGGCTCGAGGAAGAAAGTGATTAAGAGGAAGAAGATGACC
TGTGAGCCGTTAGATACAGGTCGGACGGTCATGAAACAAGGTGACTGATGCAAACAGTTTTTTCAGGCATCTAATGATTA
GACTCTCCCTTGTTTCTTTCCGCCCGTCATCAAATTACCCTTCAATTTGTCAAATATTACCCCTCACCGCCAATGGTAAG
TGAAGAGATGGGAACGTGAAGTTTCTACACCCGGGCTCAAATGCTCCTGGTGTGAAGAGTAAAATTCAAAAAATAGAAAA
TAAAATCAAAAAA-TTCTGAAATGTTTGTTGTGCATGCAAAGTTTCGTCACGAAATCACATTGGTGGAAGATAAAAAAAC
AAAAACAGAATCGACGCTCTAGTGCGCGGGAGGAAGTTCCTATCTTCTGCCTGACCCAGTAAAACTTGACCGGATGGCGA
AGAAGCAAAAGCGGAGGGATGGGGCCACTGGTGCACGGGAGGAGGTTGCCGAGCGGGAGGCTCCAGGGGC
>SNPs
S-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--------------------------------
-------------S---------------------------------------S-S-----S------S-----------
-------------SS----S----------------------------------------------S----S--------
-----------------------S-------------------------------S---S-S-S-S--S-----S-----
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-----------------------------------------------------------------S--------------
-------------------------------S------------S-----------------------------------
-----------------------------------------------------------------S--------------
---------------------------------S------------------------SSSSSSS----------S---S
----------------------------------------------S-S-----SS---S--S-----------------
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---------------------------S-------------------------S--------------------------
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-----------------------------S-----S-------------------------------S---S--------
-----SS--------------------------------------------------S--------S-------S-----
-------------------S------------------------------------------------------------
----------S---------------SS----------------S-----------------------------------
------S-------------S--S----------S---------------------------------------------
---------S--------S-------------------------------------------------------------
---------------------------------S-----------------S----------------------------
----------------------S----------------S---------------S-S----------------------
--------S------SS--------------------------------------S-------S-----S------S---
---S------------------S---------------------------------------------S-----------
------SSS-----------------------------------------------S---S-------S-----------
-------------S---------S---------------------S----------S-----------S-----------
-------S--S-----------------------S-----S----------------------------S----------
------------------SS-S----------------------------S-------------S-----
>forward_41
---------------------CTACTACTACGTGCTGCCCG---------------------------------------
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>reverse_1620
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-------------------AACTCCGGCCTACTCGTTTG-----------------------------------------
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