Multiple sequence alignment - TraesCS6A01G026400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G026400 chr6A 100.000 2543 0 0 1 2543 13068964 13066422 0.000000e+00 4697.0
1 TraesCS6A01G026400 chr6D 87.163 1114 70 42 772 1862 11775275 11774212 0.000000e+00 1197.0
2 TraesCS6A01G026400 chr6D 90.869 679 38 13 1868 2543 11774157 11773500 0.000000e+00 889.0
3 TraesCS6A01G026400 chr6B 84.895 907 60 37 978 1856 21430408 21431265 0.000000e+00 845.0
4 TraesCS6A01G026400 chr6B 84.627 657 64 14 1894 2543 21431343 21431969 9.990000e-174 619.0
5 TraesCS6A01G026400 chr6B 84.556 259 28 4 265 521 279594010 279593762 1.950000e-61 246.0
6 TraesCS6A01G026400 chr6B 80.894 246 45 2 1 246 574427231 574427474 2.580000e-45 193.0
7 TraesCS6A01G026400 chr6B 92.308 52 4 0 779 830 21423622 21423673 9.760000e-10 75.0
8 TraesCS6A01G026400 chr6B 100.000 32 0 0 949 980 21430365 21430396 2.730000e-05 60.2
9 TraesCS6A01G026400 chr3B 82.033 551 64 11 1 517 446702723 446702174 1.080000e-118 436.0
10 TraesCS6A01G026400 chr3B 80.579 242 32 8 291 519 758734520 758734759 3.360000e-39 172.0
11 TraesCS6A01G026400 chr3A 80.979 531 77 8 1 509 554087769 554087241 1.420000e-107 399.0
12 TraesCS6A01G026400 chr3A 88.636 44 4 1 678 720 342813303 342813346 5.000000e-03 52.8
13 TraesCS6A01G026400 chr7D 80.114 528 80 15 1 515 1952074 1952589 1.110000e-98 370.0
14 TraesCS6A01G026400 chr7D 78.795 415 65 13 1 396 174973796 174974206 9.030000e-65 257.0
15 TraesCS6A01G026400 chr7D 88.750 160 17 1 265 423 193184546 193184705 7.180000e-46 195.0
16 TraesCS6A01G026400 chr1D 78.488 516 76 13 8 491 7332478 7332990 3.180000e-79 305.0
17 TraesCS6A01G026400 chr4A 77.736 530 93 16 1 517 742528165 742528682 4.110000e-78 302.0
18 TraesCS6A01G026400 chr4A 82.653 98 14 3 1756 1853 638476033 638475939 1.620000e-12 84.2
19 TraesCS6A01G026400 chr4A 82.653 98 14 3 1756 1853 731450889 731450983 1.620000e-12 84.2
20 TraesCS6A01G026400 chr7A 80.096 417 58 13 2 416 74895458 74895851 1.150000e-73 287.0
21 TraesCS6A01G026400 chr7A 79.762 168 20 9 360 514 639312718 639312552 2.670000e-20 110.0
22 TraesCS6A01G026400 chr7A 82.653 98 14 3 1756 1853 32209984 32210078 1.620000e-12 84.2
23 TraesCS6A01G026400 chr7A 82.653 98 14 3 1756 1853 668744480 668744574 1.620000e-12 84.2
24 TraesCS6A01G026400 chr7A 79.208 101 13 7 678 773 490991038 490991135 2.110000e-06 63.9
25 TraesCS6A01G026400 chr1A 84.000 225 23 7 306 517 566371465 566371241 1.190000e-48 204.0
26 TraesCS6A01G026400 chr1A 77.551 98 19 2 678 772 369097413 369097316 3.530000e-04 56.5
27 TraesCS6A01G026400 chr3D 80.556 216 30 5 306 509 403236137 403236352 3.390000e-34 156.0
28 TraesCS6A01G026400 chr7B 84.000 100 13 2 675 771 359467520 359467619 2.690000e-15 93.5
29 TraesCS6A01G026400 chr5D 83.673 98 13 3 1756 1853 504137935 504137841 3.480000e-14 89.8
30 TraesCS6A01G026400 chr5A 83.673 98 13 3 1756 1853 135146371 135146465 3.480000e-14 89.8
31 TraesCS6A01G026400 chr5A 80.172 116 16 7 678 788 11066343 11066230 2.100000e-11 80.5
32 TraesCS6A01G026400 chr5A 82.609 69 8 3 707 772 362176489 362176422 9.830000e-05 58.4
33 TraesCS6A01G026400 chr1B 82.653 98 14 3 1756 1853 573513129 573513223 1.620000e-12 84.2
34 TraesCS6A01G026400 chr4B 86.301 73 7 3 1781 1853 477966042 477966111 2.710000e-10 76.8
35 TraesCS6A01G026400 chrUn 81.443 97 8 5 1755 1849 170389362 170389450 1.260000e-08 71.3
36 TraesCS6A01G026400 chr5B 100.000 28 0 0 745 772 327750227 327750200 5.000000e-03 52.8
37 TraesCS6A01G026400 chr5B 76.923 104 16 8 675 772 686007412 686007513 5.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G026400 chr6A 13066422 13068964 2542 True 4697.000000 4697 100.000000 1 2543 1 chr6A.!!$R1 2542
1 TraesCS6A01G026400 chr6D 11773500 11775275 1775 True 1043.000000 1197 89.016000 772 2543 2 chr6D.!!$R1 1771
2 TraesCS6A01G026400 chr6B 21430365 21431969 1604 False 508.066667 845 89.840667 949 2543 3 chr6B.!!$F3 1594
3 TraesCS6A01G026400 chr3B 446702174 446702723 549 True 436.000000 436 82.033000 1 517 1 chr3B.!!$R1 516
4 TraesCS6A01G026400 chr3A 554087241 554087769 528 True 399.000000 399 80.979000 1 509 1 chr3A.!!$R1 508
5 TraesCS6A01G026400 chr7D 1952074 1952589 515 False 370.000000 370 80.114000 1 515 1 chr7D.!!$F1 514
6 TraesCS6A01G026400 chr1D 7332478 7332990 512 False 305.000000 305 78.488000 8 491 1 chr1D.!!$F1 483
7 TraesCS6A01G026400 chr4A 742528165 742528682 517 False 302.000000 302 77.736000 1 517 1 chr4A.!!$F2 516

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
669 704 0.098728 CGGGCTGGATTTTTGTAGCG 59.901 55.0 0.0 0.0 37.05 4.26 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1579 1642 0.742281 CGACTGGCTGCAGCAACTAT 60.742 55.0 37.63 19.15 44.36 2.12 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
39 40 3.507162 TCAAGGAGGACAAGCATCAAA 57.493 42.857 0.00 0.00 0.00 2.69
42 43 3.228188 AGGAGGACAAGCATCAAACAA 57.772 42.857 0.00 0.00 0.00 2.83
48 49 6.165700 AGGACAAGCATCAAACAAATCTTT 57.834 33.333 0.00 0.00 0.00 2.52
68 69 1.338105 TGTCTTGGCATGAGAGGAACG 60.338 52.381 2.94 0.00 0.00 3.95
79 80 2.362632 AGGAACGCTAGGACCGCT 60.363 61.111 0.00 0.00 0.00 5.52
103 104 4.827692 CCTTTATTAGGCAAAACAACCCC 58.172 43.478 0.00 0.00 37.17 4.95
105 106 2.407340 ATTAGGCAAAACAACCCCCA 57.593 45.000 0.00 0.00 0.00 4.96
140 141 4.020617 CGGCTCCCAACAGCAGGA 62.021 66.667 0.00 0.00 41.65 3.86
218 219 2.181021 CGTTTCGAGTCCCCCGAG 59.819 66.667 0.00 0.00 37.35 4.63
258 259 2.034687 GGCCACAGCAGTCACCAT 59.965 61.111 0.00 0.00 42.56 3.55
263 264 0.250424 CACAGCAGTCACCATGGTCA 60.250 55.000 16.53 0.00 0.00 4.02
289 309 3.691342 CCTTCCGTCTCCACCGCA 61.691 66.667 0.00 0.00 0.00 5.69
304 324 2.125912 GCATGCACCTCGACGTCT 60.126 61.111 14.21 0.00 0.00 4.18
317 337 3.912907 CGTCTAGGGCCGCCGATT 61.913 66.667 2.55 0.00 0.00 3.34
327 347 3.807538 CGCCGATTTGCAGCAGCT 61.808 61.111 1.76 0.00 42.74 4.24
333 353 1.171308 GATTTGCAGCAGCTGGAGAA 58.829 50.000 24.13 16.96 42.74 2.87
357 378 2.677228 CGTGGGGATGAAAGGCCT 59.323 61.111 0.00 0.00 0.00 5.19
392 413 2.903357 GCGAGGAGATGAAGGCCA 59.097 61.111 5.01 0.00 0.00 5.36
398 419 3.397613 GAGATGAAGGCCAGCCGCT 62.398 63.158 5.01 0.00 41.95 5.52
517 552 3.798639 CTGGAGCGACGCTAGCGAG 62.799 68.421 41.33 31.92 39.88 5.03
518 553 4.615834 GGAGCGACGCTAGCGAGG 62.616 72.222 41.33 30.32 39.88 4.63
519 554 3.574445 GAGCGACGCTAGCGAGGA 61.574 66.667 41.33 0.00 39.88 3.71
520 555 3.515286 GAGCGACGCTAGCGAGGAG 62.515 68.421 41.33 27.05 39.88 3.69
530 565 4.996976 GCGAGGAGCTCAACAAGA 57.003 55.556 17.19 0.00 44.04 3.02
531 566 3.217242 GCGAGGAGCTCAACAAGAA 57.783 52.632 17.19 0.00 44.04 2.52
532 567 1.731720 GCGAGGAGCTCAACAAGAAT 58.268 50.000 17.19 0.00 44.04 2.40
533 568 2.893637 GCGAGGAGCTCAACAAGAATA 58.106 47.619 17.19 0.00 44.04 1.75
534 569 3.262420 GCGAGGAGCTCAACAAGAATAA 58.738 45.455 17.19 0.00 44.04 1.40
535 570 3.873952 GCGAGGAGCTCAACAAGAATAAT 59.126 43.478 17.19 0.00 44.04 1.28
536 571 5.050490 GCGAGGAGCTCAACAAGAATAATA 58.950 41.667 17.19 0.00 44.04 0.98
537 572 5.523916 GCGAGGAGCTCAACAAGAATAATAA 59.476 40.000 17.19 0.00 44.04 1.40
538 573 6.203723 GCGAGGAGCTCAACAAGAATAATAAT 59.796 38.462 17.19 0.00 44.04 1.28
539 574 7.570324 GCGAGGAGCTCAACAAGAATAATAATC 60.570 40.741 17.19 0.00 44.04 1.75
540 575 7.655328 CGAGGAGCTCAACAAGAATAATAATCT 59.345 37.037 17.19 0.00 0.00 2.40
541 576 9.336171 GAGGAGCTCAACAAGAATAATAATCTT 57.664 33.333 17.19 0.00 37.62 2.40
542 577 9.692325 AGGAGCTCAACAAGAATAATAATCTTT 57.308 29.630 17.19 0.00 34.99 2.52
543 578 9.727627 GGAGCTCAACAAGAATAATAATCTTTG 57.272 33.333 17.19 0.00 34.99 2.77
555 590 9.586150 GAATAATAATCTTTGAGTATGTGTGCG 57.414 33.333 0.00 0.00 0.00 5.34
556 591 6.985188 AATAATCTTTGAGTATGTGTGCGT 57.015 33.333 0.00 0.00 0.00 5.24
557 592 4.668576 AATCTTTGAGTATGTGTGCGTG 57.331 40.909 0.00 0.00 0.00 5.34
558 593 3.106242 TCTTTGAGTATGTGTGCGTGT 57.894 42.857 0.00 0.00 0.00 4.49
559 594 2.799978 TCTTTGAGTATGTGTGCGTGTG 59.200 45.455 0.00 0.00 0.00 3.82
560 595 0.865111 TTGAGTATGTGTGCGTGTGC 59.135 50.000 0.00 0.00 43.20 4.57
572 607 2.749477 GCGTGTGCAAATTTTCATCG 57.251 45.000 11.47 11.47 42.15 3.84
573 608 2.315011 GCGTGTGCAAATTTTCATCGA 58.685 42.857 16.87 0.00 42.15 3.59
574 609 2.916716 GCGTGTGCAAATTTTCATCGAT 59.083 40.909 16.87 0.00 42.15 3.59
575 610 4.094911 GCGTGTGCAAATTTTCATCGATA 58.905 39.130 16.87 0.00 42.15 2.92
576 611 4.028509 GCGTGTGCAAATTTTCATCGATAC 60.029 41.667 16.87 0.00 42.15 2.24
577 612 5.085390 CGTGTGCAAATTTTCATCGATACA 58.915 37.500 0.00 0.00 0.00 2.29
578 613 5.002468 CGTGTGCAAATTTTCATCGATACAC 59.998 40.000 0.00 4.17 33.37 2.90
579 614 5.855925 GTGTGCAAATTTTCATCGATACACA 59.144 36.000 13.22 7.62 35.89 3.72
580 615 6.527722 GTGTGCAAATTTTCATCGATACACAT 59.472 34.615 13.22 0.00 36.77 3.21
581 616 7.696035 GTGTGCAAATTTTCATCGATACACATA 59.304 33.333 13.22 0.00 36.77 2.29
582 617 8.404765 TGTGCAAATTTTCATCGATACACATAT 58.595 29.630 0.00 0.00 30.03 1.78
583 618 9.236691 GTGCAAATTTTCATCGATACACATATT 57.763 29.630 0.00 0.00 0.00 1.28
584 619 9.800433 TGCAAATTTTCATCGATACACATATTT 57.200 25.926 0.00 0.00 0.00 1.40
592 627 9.796120 TTCATCGATACACATATTTATATGCGA 57.204 29.630 0.00 9.60 42.98 5.10
593 628 9.965824 TCATCGATACACATATTTATATGCGAT 57.034 29.630 0.00 11.05 42.98 4.58
594 629 9.999883 CATCGATACACATATTTATATGCGATG 57.000 33.333 21.33 21.33 43.47 3.84
595 630 9.750125 ATCGATACACATATTTATATGCGATGT 57.250 29.630 15.19 12.02 42.98 3.06
613 648 8.257830 TGCGATGTATAAAGAACACAAATACA 57.742 30.769 0.00 0.00 37.42 2.29
614 649 8.888716 TGCGATGTATAAAGAACACAAATACAT 58.111 29.630 6.09 6.09 43.13 2.29
615 650 9.158364 GCGATGTATAAAGAACACAAATACATG 57.842 33.333 10.16 0.00 41.47 3.21
626 661 9.044150 AGAACACAAATACATGAAACAAAATGG 57.956 29.630 0.00 0.00 0.00 3.16
627 662 8.954950 AACACAAATACATGAAACAAAATGGA 57.045 26.923 0.00 0.00 0.00 3.41
628 663 8.364129 ACACAAATACATGAAACAAAATGGAC 57.636 30.769 0.00 0.00 0.00 4.02
629 664 8.203485 ACACAAATACATGAAACAAAATGGACT 58.797 29.630 0.00 0.00 0.00 3.85
630 665 9.044150 CACAAATACATGAAACAAAATGGACTT 57.956 29.630 0.00 0.00 0.00 3.01
631 666 9.044150 ACAAATACATGAAACAAAATGGACTTG 57.956 29.630 0.00 0.00 0.00 3.16
632 667 9.044150 CAAATACATGAAACAAAATGGACTTGT 57.956 29.630 0.00 0.00 38.65 3.16
636 671 8.181904 ACATGAAACAAAATGGACTTGTATCT 57.818 30.769 0.00 0.00 35.98 1.98
637 672 9.295825 ACATGAAACAAAATGGACTTGTATCTA 57.704 29.630 0.00 0.00 35.98 1.98
640 675 9.739276 TGAAACAAAATGGACTTGTATCTATCT 57.261 29.630 0.00 0.00 35.98 1.98
643 678 9.520515 AACAAAATGGACTTGTATCTATCTTGT 57.479 29.630 0.00 0.00 35.98 3.16
644 679 9.520515 ACAAAATGGACTTGTATCTATCTTGTT 57.479 29.630 0.00 0.00 35.26 2.83
645 680 9.778993 CAAAATGGACTTGTATCTATCTTGTTG 57.221 33.333 0.00 0.00 0.00 3.33
646 681 9.520515 AAAATGGACTTGTATCTATCTTGTTGT 57.479 29.630 0.00 0.00 0.00 3.32
647 682 9.520515 AAATGGACTTGTATCTATCTTGTTGTT 57.479 29.630 0.00 0.00 0.00 2.83
648 683 9.520515 AATGGACTTGTATCTATCTTGTTGTTT 57.479 29.630 0.00 0.00 0.00 2.83
649 684 8.918202 TGGACTTGTATCTATCTTGTTGTTTT 57.082 30.769 0.00 0.00 0.00 2.43
650 685 8.999431 TGGACTTGTATCTATCTTGTTGTTTTC 58.001 33.333 0.00 0.00 0.00 2.29
651 686 8.169268 GGACTTGTATCTATCTTGTTGTTTTCG 58.831 37.037 0.00 0.00 0.00 3.46
652 687 8.029642 ACTTGTATCTATCTTGTTGTTTTCGG 57.970 34.615 0.00 0.00 0.00 4.30
653 688 6.978343 TGTATCTATCTTGTTGTTTTCGGG 57.022 37.500 0.00 0.00 0.00 5.14
654 689 4.965119 ATCTATCTTGTTGTTTTCGGGC 57.035 40.909 0.00 0.00 0.00 6.13
655 690 4.015872 TCTATCTTGTTGTTTTCGGGCT 57.984 40.909 0.00 0.00 0.00 5.19
656 691 3.751175 TCTATCTTGTTGTTTTCGGGCTG 59.249 43.478 0.00 0.00 0.00 4.85
657 692 1.028905 TCTTGTTGTTTTCGGGCTGG 58.971 50.000 0.00 0.00 0.00 4.85
658 693 1.028905 CTTGTTGTTTTCGGGCTGGA 58.971 50.000 0.00 0.00 0.00 3.86
659 694 1.613437 CTTGTTGTTTTCGGGCTGGAT 59.387 47.619 0.00 0.00 0.00 3.41
660 695 1.698506 TGTTGTTTTCGGGCTGGATT 58.301 45.000 0.00 0.00 0.00 3.01
661 696 2.035632 TGTTGTTTTCGGGCTGGATTT 58.964 42.857 0.00 0.00 0.00 2.17
662 697 2.432510 TGTTGTTTTCGGGCTGGATTTT 59.567 40.909 0.00 0.00 0.00 1.82
663 698 3.118592 TGTTGTTTTCGGGCTGGATTTTT 60.119 39.130 0.00 0.00 0.00 1.94
664 699 3.104843 TGTTTTCGGGCTGGATTTTTG 57.895 42.857 0.00 0.00 0.00 2.44
665 700 2.432510 TGTTTTCGGGCTGGATTTTTGT 59.567 40.909 0.00 0.00 0.00 2.83
666 701 3.637229 TGTTTTCGGGCTGGATTTTTGTA 59.363 39.130 0.00 0.00 0.00 2.41
667 702 4.234574 GTTTTCGGGCTGGATTTTTGTAG 58.765 43.478 0.00 0.00 0.00 2.74
668 703 1.459450 TCGGGCTGGATTTTTGTAGC 58.541 50.000 0.00 0.00 35.49 3.58
669 704 0.098728 CGGGCTGGATTTTTGTAGCG 59.901 55.000 0.00 0.00 37.05 4.26
670 705 1.173913 GGGCTGGATTTTTGTAGCGT 58.826 50.000 0.00 0.00 37.05 5.07
671 706 2.361789 GGGCTGGATTTTTGTAGCGTA 58.638 47.619 0.00 0.00 37.05 4.42
672 707 2.949644 GGGCTGGATTTTTGTAGCGTAT 59.050 45.455 0.00 0.00 37.05 3.06
673 708 4.131596 GGGCTGGATTTTTGTAGCGTATA 58.868 43.478 0.00 0.00 37.05 1.47
674 709 4.577283 GGGCTGGATTTTTGTAGCGTATAA 59.423 41.667 0.00 0.00 37.05 0.98
675 710 5.240844 GGGCTGGATTTTTGTAGCGTATAAT 59.759 40.000 0.00 0.00 37.05 1.28
676 711 6.371389 GGCTGGATTTTTGTAGCGTATAATC 58.629 40.000 0.00 0.00 37.05 1.75
677 712 6.204882 GGCTGGATTTTTGTAGCGTATAATCT 59.795 38.462 0.00 0.00 37.05 2.40
678 713 7.386848 GGCTGGATTTTTGTAGCGTATAATCTA 59.613 37.037 0.00 0.00 37.05 1.98
679 714 8.221766 GCTGGATTTTTGTAGCGTATAATCTAC 58.778 37.037 5.96 5.96 36.58 2.59
680 715 9.477484 CTGGATTTTTGTAGCGTATAATCTACT 57.523 33.333 11.62 0.00 36.88 2.57
681 716 9.472361 TGGATTTTTGTAGCGTATAATCTACTC 57.528 33.333 11.62 3.81 36.88 2.59
682 717 8.923683 GGATTTTTGTAGCGTATAATCTACTCC 58.076 37.037 11.62 7.59 36.88 3.85
683 718 8.828688 ATTTTTGTAGCGTATAATCTACTCCC 57.171 34.615 11.62 0.00 36.88 4.30
684 719 5.972107 TTGTAGCGTATAATCTACTCCCC 57.028 43.478 11.62 0.00 36.88 4.81
685 720 4.338879 TGTAGCGTATAATCTACTCCCCC 58.661 47.826 11.62 0.00 36.88 5.40
686 721 3.537795 AGCGTATAATCTACTCCCCCA 57.462 47.619 0.00 0.00 0.00 4.96
687 722 4.062490 AGCGTATAATCTACTCCCCCAT 57.938 45.455 0.00 0.00 0.00 4.00
688 723 4.024670 AGCGTATAATCTACTCCCCCATC 58.975 47.826 0.00 0.00 0.00 3.51
689 724 3.132467 GCGTATAATCTACTCCCCCATCC 59.868 52.174 0.00 0.00 0.00 3.51
690 725 3.705072 CGTATAATCTACTCCCCCATCCC 59.295 52.174 0.00 0.00 0.00 3.85
691 726 3.963525 ATAATCTACTCCCCCATCCCA 57.036 47.619 0.00 0.00 0.00 4.37
692 727 2.605825 AATCTACTCCCCCATCCCAA 57.394 50.000 0.00 0.00 0.00 4.12
693 728 2.605825 ATCTACTCCCCCATCCCAAA 57.394 50.000 0.00 0.00 0.00 3.28
694 729 2.369668 TCTACTCCCCCATCCCAAAA 57.630 50.000 0.00 0.00 0.00 2.44
695 730 2.871796 TCTACTCCCCCATCCCAAAAT 58.128 47.619 0.00 0.00 0.00 1.82
696 731 4.029142 TCTACTCCCCCATCCCAAAATA 57.971 45.455 0.00 0.00 0.00 1.40
697 732 4.385386 TCTACTCCCCCATCCCAAAATAA 58.615 43.478 0.00 0.00 0.00 1.40
698 733 3.688049 ACTCCCCCATCCCAAAATAAG 57.312 47.619 0.00 0.00 0.00 1.73
699 734 2.933139 ACTCCCCCATCCCAAAATAAGT 59.067 45.455 0.00 0.00 0.00 2.24
700 735 3.299503 CTCCCCCATCCCAAAATAAGTG 58.700 50.000 0.00 0.00 0.00 3.16
701 736 2.657459 TCCCCCATCCCAAAATAAGTGT 59.343 45.455 0.00 0.00 0.00 3.55
702 737 3.031013 CCCCCATCCCAAAATAAGTGTC 58.969 50.000 0.00 0.00 0.00 3.67
703 738 3.309848 CCCCCATCCCAAAATAAGTGTCT 60.310 47.826 0.00 0.00 0.00 3.41
704 739 3.954258 CCCCATCCCAAAATAAGTGTCTC 59.046 47.826 0.00 0.00 0.00 3.36
705 740 4.325344 CCCCATCCCAAAATAAGTGTCTCT 60.325 45.833 0.00 0.00 0.00 3.10
706 741 5.104109 CCCCATCCCAAAATAAGTGTCTCTA 60.104 44.000 0.00 0.00 0.00 2.43
707 742 5.823045 CCCATCCCAAAATAAGTGTCTCTAC 59.177 44.000 0.00 0.00 0.00 2.59
708 743 6.353082 CCCATCCCAAAATAAGTGTCTCTACT 60.353 42.308 0.00 0.00 0.00 2.57
709 744 7.112779 CCATCCCAAAATAAGTGTCTCTACTT 58.887 38.462 0.00 0.00 43.03 2.24
710 745 7.611855 CCATCCCAAAATAAGTGTCTCTACTTT 59.388 37.037 0.00 0.00 41.01 2.66
711 746 7.979444 TCCCAAAATAAGTGTCTCTACTTTG 57.021 36.000 0.00 0.00 41.01 2.77
712 747 7.514721 TCCCAAAATAAGTGTCTCTACTTTGT 58.485 34.615 0.00 0.00 41.01 2.83
713 748 7.444183 TCCCAAAATAAGTGTCTCTACTTTGTG 59.556 37.037 0.00 0.00 41.01 3.33
714 749 7.078228 CCAAAATAAGTGTCTCTACTTTGTGC 58.922 38.462 0.00 0.00 41.01 4.57
715 750 7.041098 CCAAAATAAGTGTCTCTACTTTGTGCT 60.041 37.037 0.00 0.00 41.01 4.40
716 751 8.988934 CAAAATAAGTGTCTCTACTTTGTGCTA 58.011 33.333 0.00 0.00 41.01 3.49
717 752 9.555727 AAAATAAGTGTCTCTACTTTGTGCTAA 57.444 29.630 0.00 0.00 41.01 3.09
718 753 8.764524 AATAAGTGTCTCTACTTTGTGCTAAG 57.235 34.615 0.00 0.00 41.01 2.18
719 754 5.793030 AGTGTCTCTACTTTGTGCTAAGT 57.207 39.130 4.65 4.65 41.13 2.24
720 755 6.896021 AGTGTCTCTACTTTGTGCTAAGTA 57.104 37.500 6.20 6.20 39.08 2.24
721 756 7.469537 AGTGTCTCTACTTTGTGCTAAGTAT 57.530 36.000 6.68 0.00 39.26 2.12
722 757 8.577048 AGTGTCTCTACTTTGTGCTAAGTATA 57.423 34.615 6.68 0.93 39.26 1.47
723 758 8.679100 AGTGTCTCTACTTTGTGCTAAGTATAG 58.321 37.037 6.68 8.72 39.26 1.31
742 777 9.938280 AAGTATAGCATGAAGTTGTACTAAACA 57.062 29.630 0.00 0.00 35.02 2.83
746 781 7.133891 AGCATGAAGTTGTACTAAACATGAC 57.866 36.000 16.76 11.15 38.10 3.06
747 782 6.710295 AGCATGAAGTTGTACTAAACATGACA 59.290 34.615 16.76 0.00 38.10 3.58
748 783 6.797033 GCATGAAGTTGTACTAAACATGACAC 59.203 38.462 16.76 0.00 38.10 3.67
749 784 7.307989 GCATGAAGTTGTACTAAACATGACACT 60.308 37.037 16.76 0.00 38.10 3.55
750 785 8.559536 CATGAAGTTGTACTAAACATGACACTT 58.440 33.333 0.00 0.00 37.87 3.16
751 786 9.772973 ATGAAGTTGTACTAAACATGACACTTA 57.227 29.630 0.00 0.00 36.19 2.24
752 787 9.772973 TGAAGTTGTACTAAACATGACACTTAT 57.227 29.630 0.00 0.00 36.19 1.73
758 793 8.788806 TGTACTAAACATGACACTTATTTTGGG 58.211 33.333 0.00 0.00 31.43 4.12
759 794 9.005777 GTACTAAACATGACACTTATTTTGGGA 57.994 33.333 0.00 0.00 0.00 4.37
760 795 7.882179 ACTAAACATGACACTTATTTTGGGAC 58.118 34.615 0.00 0.00 0.00 4.46
761 796 5.371115 AACATGACACTTATTTTGGGACG 57.629 39.130 0.00 0.00 0.00 4.79
762 797 4.394729 ACATGACACTTATTTTGGGACGT 58.605 39.130 0.00 0.00 0.00 4.34
763 798 5.553123 ACATGACACTTATTTTGGGACGTA 58.447 37.500 0.00 0.00 0.00 3.57
764 799 5.642063 ACATGACACTTATTTTGGGACGTAG 59.358 40.000 0.00 0.00 0.00 3.51
765 800 4.571919 TGACACTTATTTTGGGACGTAGG 58.428 43.478 0.00 0.00 0.00 3.18
766 801 3.937079 GACACTTATTTTGGGACGTAGGG 59.063 47.826 0.00 0.00 0.00 3.53
767 802 3.583966 ACACTTATTTTGGGACGTAGGGA 59.416 43.478 0.00 0.00 0.00 4.20
768 803 4.189231 CACTTATTTTGGGACGTAGGGAG 58.811 47.826 0.00 0.00 0.00 4.30
769 804 3.842436 ACTTATTTTGGGACGTAGGGAGT 59.158 43.478 0.00 0.00 0.00 3.85
770 805 5.025453 ACTTATTTTGGGACGTAGGGAGTA 58.975 41.667 0.00 0.00 0.00 2.59
774 809 5.603170 TTTTGGGACGTAGGGAGTATAAG 57.397 43.478 0.00 0.00 0.00 1.73
777 812 3.052642 TGGGACGTAGGGAGTATAAGGTT 60.053 47.826 0.00 0.00 0.00 3.50
791 826 8.815189 GGAGTATAAGGTTACTTCACGAAATTC 58.185 37.037 0.00 0.00 38.14 2.17
801 837 8.430828 GTTACTTCACGAAATTCTACAGGTAAC 58.569 37.037 0.00 0.00 0.00 2.50
936 979 4.368808 CGCGCTCCGTTGGTGTTG 62.369 66.667 5.56 0.00 0.00 3.33
937 980 4.025401 GCGCTCCGTTGGTGTTGG 62.025 66.667 0.00 0.00 0.00 3.77
984 1041 5.247110 TGAGGGGATAATGAAGCAGATAGAC 59.753 44.000 0.00 0.00 0.00 2.59
1049 1106 2.760378 GCTCATCCCCTCCATGGCA 61.760 63.158 6.96 0.00 0.00 4.92
1050 1107 1.150081 CTCATCCCCTCCATGGCAC 59.850 63.158 6.96 0.00 0.00 5.01
1065 1122 3.775654 CACGCCTCCTCCTCCACC 61.776 72.222 0.00 0.00 0.00 4.61
1066 1123 4.316823 ACGCCTCCTCCTCCACCA 62.317 66.667 0.00 0.00 0.00 4.17
1067 1124 3.775654 CGCCTCCTCCTCCACCAC 61.776 72.222 0.00 0.00 0.00 4.16
1068 1125 2.284995 GCCTCCTCCTCCACCACT 60.285 66.667 0.00 0.00 0.00 4.00
1071 1131 0.041238 CCTCCTCCTCCACCACTACA 59.959 60.000 0.00 0.00 0.00 2.74
1072 1132 1.187087 CTCCTCCTCCACCACTACAC 58.813 60.000 0.00 0.00 0.00 2.90
1078 1138 2.159819 CTCCACCACTACACGCAGCT 62.160 60.000 0.00 0.00 0.00 4.24
1081 1141 3.121030 CCACTACACGCAGCTGCC 61.121 66.667 32.07 15.05 37.91 4.85
1102 1162 4.087892 CCCTCCTCCACACAGCCG 62.088 72.222 0.00 0.00 0.00 5.52
1279 1339 1.608717 GAGGGAGCAAGGCGAGAAGA 61.609 60.000 0.00 0.00 0.00 2.87
1544 1607 0.322187 ACGACCACCACCAATTAGCC 60.322 55.000 0.00 0.00 0.00 3.93
1545 1608 0.035439 CGACCACCACCAATTAGCCT 60.035 55.000 0.00 0.00 0.00 4.58
1546 1609 1.613255 CGACCACCACCAATTAGCCTT 60.613 52.381 0.00 0.00 0.00 4.35
1547 1610 2.355310 CGACCACCACCAATTAGCCTTA 60.355 50.000 0.00 0.00 0.00 2.69
1548 1611 3.279434 GACCACCACCAATTAGCCTTAG 58.721 50.000 0.00 0.00 0.00 2.18
1549 1612 2.024414 CCACCACCAATTAGCCTTAGC 58.976 52.381 0.00 0.00 40.32 3.09
1568 1631 3.734776 GCCAAAGCTGCATCATTTTTC 57.265 42.857 1.02 0.00 35.50 2.29
1569 1632 3.068560 GCCAAAGCTGCATCATTTTTCA 58.931 40.909 1.02 0.00 35.50 2.69
1570 1633 3.124636 GCCAAAGCTGCATCATTTTTCAG 59.875 43.478 1.02 0.00 35.50 3.02
1571 1634 4.312443 CCAAAGCTGCATCATTTTTCAGT 58.688 39.130 1.02 0.00 0.00 3.41
1572 1635 5.472148 CCAAAGCTGCATCATTTTTCAGTA 58.528 37.500 1.02 0.00 0.00 2.74
1573 1636 5.346822 CCAAAGCTGCATCATTTTTCAGTAC 59.653 40.000 1.02 0.00 0.00 2.73
1574 1637 4.346734 AGCTGCATCATTTTTCAGTACG 57.653 40.909 1.02 0.00 0.00 3.67
1575 1638 3.753272 AGCTGCATCATTTTTCAGTACGT 59.247 39.130 1.02 0.00 0.00 3.57
1576 1639 4.935205 AGCTGCATCATTTTTCAGTACGTA 59.065 37.500 1.02 0.00 0.00 3.57
1577 1640 5.411361 AGCTGCATCATTTTTCAGTACGTAA 59.589 36.000 1.02 0.00 0.00 3.18
1578 1641 6.094048 AGCTGCATCATTTTTCAGTACGTAAT 59.906 34.615 1.02 0.00 0.00 1.89
1579 1642 7.279981 AGCTGCATCATTTTTCAGTACGTAATA 59.720 33.333 1.02 0.00 0.00 0.98
1592 1655 4.982916 AGTACGTAATATAGTTGCTGCAGC 59.017 41.667 31.89 31.89 42.50 5.25
1598 1661 0.742281 ATAGTTGCTGCAGCCAGTCG 60.742 55.000 34.64 0.00 41.26 4.18
1619 1682 5.009210 GTCGATCTAGCAAGTATCCAACTCT 59.991 44.000 0.00 0.00 37.50 3.24
1656 1719 6.322969 TGAATCAATCAATCAATCAAGGGGAG 59.677 38.462 0.00 0.00 34.30 4.30
1744 1827 2.043227 CTGTCAGGGAGGGAAGGATAC 58.957 57.143 0.00 0.00 0.00 2.24
1766 1853 2.146061 GCTCCCCTCCCCTGATCTG 61.146 68.421 0.00 0.00 0.00 2.90
1792 1879 9.760660 GCTTCAGAAACTAATACAACAACATAG 57.239 33.333 0.00 0.00 0.00 2.23
1806 1893 3.716353 ACAACATAGGATGGGATGCTACA 59.284 43.478 0.00 0.00 35.98 2.74
1811 1898 2.624495 AGGATGGGATGCTACATGCTA 58.376 47.619 0.00 0.00 42.78 3.49
1812 1899 2.304180 AGGATGGGATGCTACATGCTAC 59.696 50.000 0.00 0.00 42.78 3.58
1813 1900 2.616510 GGATGGGATGCTACATGCTACC 60.617 54.545 0.00 0.00 43.37 3.18
1814 1901 1.506025 TGGGATGCTACATGCTACCA 58.494 50.000 0.00 0.00 43.37 3.25
1815 1902 2.057140 TGGGATGCTACATGCTACCAT 58.943 47.619 0.00 0.00 43.37 3.55
1835 1922 6.068010 ACCATGACCATCTTACAACAAGAAA 58.932 36.000 0.00 0.00 0.00 2.52
1853 1940 5.897377 AGAAAAACAACAACACAGCTAGT 57.103 34.783 0.00 0.00 0.00 2.57
1854 1941 6.995511 AGAAAAACAACAACACAGCTAGTA 57.004 33.333 0.00 0.00 0.00 1.82
1855 1942 7.016361 AGAAAAACAACAACACAGCTAGTAG 57.984 36.000 0.00 0.00 0.00 2.57
1857 1944 7.767198 AGAAAAACAACAACACAGCTAGTAGTA 59.233 33.333 0.00 0.00 0.00 1.82
1858 1945 7.478520 AAAACAACAACACAGCTAGTAGTAG 57.521 36.000 0.00 0.00 0.00 2.57
1861 1948 7.698506 ACAACAACACAGCTAGTAGTAGATA 57.301 36.000 8.87 0.00 0.00 1.98
1862 1949 7.763356 ACAACAACACAGCTAGTAGTAGATAG 58.237 38.462 8.87 1.34 0.00 2.08
1863 1950 6.380095 ACAACACAGCTAGTAGTAGATAGC 57.620 41.667 8.87 6.30 43.85 2.97
1883 2053 2.417933 GCTAGAACCACACTGCTGATTG 59.582 50.000 0.00 0.00 0.00 2.67
1884 2054 1.242076 AGAACCACACTGCTGATTGC 58.758 50.000 0.00 0.00 43.25 3.56
1901 2071 3.803082 CAACCTGACATGGCGGCG 61.803 66.667 0.12 0.51 0.00 6.46
1997 2167 1.073923 GTTCATTGTCAGAGGGTGGGT 59.926 52.381 0.00 0.00 0.00 4.51
2071 2244 3.490439 TGTTGTCAGCCTTCTTCATGA 57.510 42.857 0.00 0.00 0.00 3.07
2078 2254 3.754850 TCAGCCTTCTTCATGACATTGTG 59.245 43.478 0.00 0.00 0.00 3.33
2145 2321 3.699894 AGGGTGGTCTGCTGCTCG 61.700 66.667 0.00 0.00 0.00 5.03
2151 2327 2.505118 GTCTGCTGCTCGTCGTCC 60.505 66.667 0.00 0.00 0.00 4.79
2163 2339 2.034532 TCGTCCGACCAGTAGCCA 59.965 61.111 0.00 0.00 0.00 4.75
2247 2423 1.340795 CCTGCTTCCTCCATCTGCTTT 60.341 52.381 0.00 0.00 0.00 3.51
2322 2498 6.315393 TGAACTTTCCTATTCGACTTAATGGC 59.685 38.462 0.00 0.00 0.00 4.40
2347 2523 3.636679 TCTCTAGGTAGAATGCAGCACT 58.363 45.455 0.00 0.00 0.00 4.40
2363 2539 3.003585 CAGCACTGCAACAGTTGTTATGA 59.996 43.478 14.88 0.00 42.59 2.15
2364 2540 3.251729 AGCACTGCAACAGTTGTTATGAG 59.748 43.478 14.88 6.12 42.59 2.90
2381 2557 3.138884 TGAGGATAAAACTGCAGCACA 57.861 42.857 15.27 0.00 0.00 4.57
2432 2608 4.461781 AGAATGAGGCTGACTCCAAATTTG 59.538 41.667 11.40 11.40 46.01 2.32
2434 2610 3.149196 TGAGGCTGACTCCAAATTTGTC 58.851 45.455 16.73 8.62 46.01 3.18
2463 2639 6.687105 CACTAGCACAAACAACTACAAACTTC 59.313 38.462 0.00 0.00 0.00 3.01
2470 2647 3.463944 ACAACTACAAACTTCACCTCGG 58.536 45.455 0.00 0.00 0.00 4.63
2472 2649 3.107642 ACTACAAACTTCACCTCGGTG 57.892 47.619 9.82 9.82 46.64 4.94
2498 2676 7.843490 AGTTTTCTTATTATCGTAGCAGCAA 57.157 32.000 0.00 0.00 0.00 3.91
2499 2677 7.685594 AGTTTTCTTATTATCGTAGCAGCAAC 58.314 34.615 0.00 0.00 0.00 4.17
2500 2678 7.333423 AGTTTTCTTATTATCGTAGCAGCAACA 59.667 33.333 0.00 0.00 0.00 3.33
2505 2683 1.363744 ATCGTAGCAGCAACAGCTTC 58.636 50.000 0.00 0.00 43.25 3.86
2531 2709 5.459536 AAGATTTTCCCAGAAGCAAGTTC 57.540 39.130 0.00 0.00 35.08 3.01
2533 2711 5.082425 AGATTTTCCCAGAAGCAAGTTCAT 58.918 37.500 0.00 0.00 37.67 2.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
15 16 4.033009 TGATGCTTGTCCTCCTTGATCTA 58.967 43.478 0.00 0.00 0.00 1.98
42 43 4.015084 CCTCTCATGCCAAGACAAAGATT 58.985 43.478 0.00 0.00 0.00 2.40
48 49 1.338105 CGTTCCTCTCATGCCAAGACA 60.338 52.381 0.00 0.00 0.00 3.41
68 69 0.106894 ATAAAGGCAGCGGTCCTAGC 59.893 55.000 6.12 0.00 32.65 3.42
94 95 2.123640 CGTGGGTGGGGGTTGTTT 60.124 61.111 0.00 0.00 0.00 2.83
140 141 0.814457 GTGTCTGCTCAGATCTCCGT 59.186 55.000 2.62 0.00 39.97 4.69
173 174 3.647649 CTCATCTCCGCGTGGTGCA 62.648 63.158 16.01 3.42 46.97 4.57
203 204 3.387947 GGCTCGGGGGACTCGAAA 61.388 66.667 0.00 0.00 36.15 3.46
272 292 3.019003 ATGCGGTGGAGACGGAAGG 62.019 63.158 0.00 0.00 34.79 3.46
274 294 2.264480 CATGCGGTGGAGACGGAA 59.736 61.111 0.00 0.00 34.79 4.30
289 309 1.384989 CCCTAGACGTCGAGGTGCAT 61.385 60.000 33.84 9.16 37.08 3.96
304 324 4.102815 TGCAAATCGGCGGCCCTA 62.103 61.111 14.55 1.72 36.28 3.53
317 337 1.601759 GGTTCTCCAGCTGCTGCAA 60.602 57.895 23.86 12.63 42.74 4.08
327 347 4.308458 CCACGCGTGGGTTCTCCA 62.308 66.667 43.64 0.00 46.81 3.86
372 393 2.496341 CCTTCATCTCCTCGCGCA 59.504 61.111 8.75 0.00 0.00 6.09
495 529 4.435970 TAGCGTCGCTCCAGGGGA 62.436 66.667 25.50 0.25 40.44 4.81
517 552 9.727627 CAAAGATTATTATTCTTGTTGAGCTCC 57.272 33.333 12.15 0.00 33.79 4.70
529 564 9.586150 CGCACACATACTCAAAGATTATTATTC 57.414 33.333 0.00 0.00 0.00 1.75
530 565 9.109393 ACGCACACATACTCAAAGATTATTATT 57.891 29.630 0.00 0.00 0.00 1.40
531 566 8.551205 CACGCACACATACTCAAAGATTATTAT 58.449 33.333 0.00 0.00 0.00 1.28
532 567 7.547722 ACACGCACACATACTCAAAGATTATTA 59.452 33.333 0.00 0.00 0.00 0.98
533 568 6.371548 ACACGCACACATACTCAAAGATTATT 59.628 34.615 0.00 0.00 0.00 1.40
534 569 5.874810 ACACGCACACATACTCAAAGATTAT 59.125 36.000 0.00 0.00 0.00 1.28
535 570 5.120053 CACACGCACACATACTCAAAGATTA 59.880 40.000 0.00 0.00 0.00 1.75
536 571 4.065088 ACACGCACACATACTCAAAGATT 58.935 39.130 0.00 0.00 0.00 2.40
537 572 3.433274 CACACGCACACATACTCAAAGAT 59.567 43.478 0.00 0.00 0.00 2.40
538 573 2.799978 CACACGCACACATACTCAAAGA 59.200 45.455 0.00 0.00 0.00 2.52
539 574 2.662791 GCACACGCACACATACTCAAAG 60.663 50.000 0.00 0.00 38.36 2.77
540 575 1.262950 GCACACGCACACATACTCAAA 59.737 47.619 0.00 0.00 38.36 2.69
541 576 0.865111 GCACACGCACACATACTCAA 59.135 50.000 0.00 0.00 38.36 3.02
542 577 0.249657 TGCACACGCACACATACTCA 60.250 50.000 0.00 0.00 45.36 3.41
543 578 2.527671 TGCACACGCACACATACTC 58.472 52.632 0.00 0.00 45.36 2.59
544 579 4.769047 TGCACACGCACACATACT 57.231 50.000 0.00 0.00 45.36 2.12
553 588 2.315011 TCGATGAAAATTTGCACACGC 58.685 42.857 17.50 2.67 39.24 5.34
554 589 5.002468 GTGTATCGATGAAAATTTGCACACG 59.998 40.000 16.66 16.66 0.00 4.49
555 590 5.855925 TGTGTATCGATGAAAATTTGCACAC 59.144 36.000 8.54 10.61 34.58 3.82
556 591 6.006759 TGTGTATCGATGAAAATTTGCACA 57.993 33.333 8.54 3.10 0.00 4.57
557 592 8.786937 ATATGTGTATCGATGAAAATTTGCAC 57.213 30.769 8.54 0.19 0.00 4.57
558 593 9.800433 AAATATGTGTATCGATGAAAATTTGCA 57.200 25.926 8.54 0.07 0.00 4.08
566 601 9.796120 TCGCATATAAATATGTGTATCGATGAA 57.204 29.630 18.31 0.00 46.23 2.57
567 602 9.965824 ATCGCATATAAATATGTGTATCGATGA 57.034 29.630 18.31 0.00 46.23 2.92
568 603 9.999883 CATCGCATATAAATATGTGTATCGATG 57.000 33.333 21.62 21.62 46.23 3.84
569 604 9.750125 ACATCGCATATAAATATGTGTATCGAT 57.250 29.630 18.31 15.24 46.23 3.59
587 622 8.888716 TGTATTTGTGTTCTTTATACATCGCAT 58.111 29.630 0.00 0.00 29.42 4.73
588 623 8.257830 TGTATTTGTGTTCTTTATACATCGCA 57.742 30.769 0.00 0.00 29.42 5.10
589 624 9.158364 CATGTATTTGTGTTCTTTATACATCGC 57.842 33.333 0.00 0.00 39.25 4.58
600 635 9.044150 CCATTTTGTTTCATGTATTTGTGTTCT 57.956 29.630 0.00 0.00 0.00 3.01
601 636 9.039870 TCCATTTTGTTTCATGTATTTGTGTTC 57.960 29.630 0.00 0.00 0.00 3.18
602 637 8.825745 GTCCATTTTGTTTCATGTATTTGTGTT 58.174 29.630 0.00 0.00 0.00 3.32
603 638 8.203485 AGTCCATTTTGTTTCATGTATTTGTGT 58.797 29.630 0.00 0.00 0.00 3.72
604 639 8.592105 AGTCCATTTTGTTTCATGTATTTGTG 57.408 30.769 0.00 0.00 0.00 3.33
605 640 9.044150 CAAGTCCATTTTGTTTCATGTATTTGT 57.956 29.630 0.00 0.00 0.00 2.83
606 641 9.044150 ACAAGTCCATTTTGTTTCATGTATTTG 57.956 29.630 0.00 0.00 35.32 2.32
610 645 9.295825 AGATACAAGTCCATTTTGTTTCATGTA 57.704 29.630 9.88 0.00 38.29 2.29
611 646 8.181904 AGATACAAGTCCATTTTGTTTCATGT 57.818 30.769 9.88 0.00 38.29 3.21
614 649 9.739276 AGATAGATACAAGTCCATTTTGTTTCA 57.261 29.630 9.88 0.32 38.29 2.69
617 652 9.520515 ACAAGATAGATACAAGTCCATTTTGTT 57.479 29.630 0.00 0.00 39.36 2.83
618 653 9.520515 AACAAGATAGATACAAGTCCATTTTGT 57.479 29.630 0.00 0.00 41.36 2.83
619 654 9.778993 CAACAAGATAGATACAAGTCCATTTTG 57.221 33.333 0.00 0.00 0.00 2.44
620 655 9.520515 ACAACAAGATAGATACAAGTCCATTTT 57.479 29.630 0.00 0.00 0.00 1.82
621 656 9.520515 AACAACAAGATAGATACAAGTCCATTT 57.479 29.630 0.00 0.00 0.00 2.32
622 657 9.520515 AAACAACAAGATAGATACAAGTCCATT 57.479 29.630 0.00 0.00 0.00 3.16
623 658 9.520515 AAAACAACAAGATAGATACAAGTCCAT 57.479 29.630 0.00 0.00 0.00 3.41
624 659 8.918202 AAAACAACAAGATAGATACAAGTCCA 57.082 30.769 0.00 0.00 0.00 4.02
625 660 8.169268 CGAAAACAACAAGATAGATACAAGTCC 58.831 37.037 0.00 0.00 0.00 3.85
626 661 8.169268 CCGAAAACAACAAGATAGATACAAGTC 58.831 37.037 0.00 0.00 0.00 3.01
627 662 7.119262 CCCGAAAACAACAAGATAGATACAAGT 59.881 37.037 0.00 0.00 0.00 3.16
628 663 7.464358 CCCGAAAACAACAAGATAGATACAAG 58.536 38.462 0.00 0.00 0.00 3.16
629 664 6.128117 GCCCGAAAACAACAAGATAGATACAA 60.128 38.462 0.00 0.00 0.00 2.41
630 665 5.353123 GCCCGAAAACAACAAGATAGATACA 59.647 40.000 0.00 0.00 0.00 2.29
631 666 5.585047 AGCCCGAAAACAACAAGATAGATAC 59.415 40.000 0.00 0.00 0.00 2.24
632 667 5.584649 CAGCCCGAAAACAACAAGATAGATA 59.415 40.000 0.00 0.00 0.00 1.98
633 668 4.396166 CAGCCCGAAAACAACAAGATAGAT 59.604 41.667 0.00 0.00 0.00 1.98
634 669 3.751175 CAGCCCGAAAACAACAAGATAGA 59.249 43.478 0.00 0.00 0.00 1.98
635 670 3.119849 CCAGCCCGAAAACAACAAGATAG 60.120 47.826 0.00 0.00 0.00 2.08
636 671 2.817258 CCAGCCCGAAAACAACAAGATA 59.183 45.455 0.00 0.00 0.00 1.98
637 672 1.613437 CCAGCCCGAAAACAACAAGAT 59.387 47.619 0.00 0.00 0.00 2.40
638 673 1.028905 CCAGCCCGAAAACAACAAGA 58.971 50.000 0.00 0.00 0.00 3.02
639 674 1.028905 TCCAGCCCGAAAACAACAAG 58.971 50.000 0.00 0.00 0.00 3.16
640 675 1.698506 ATCCAGCCCGAAAACAACAA 58.301 45.000 0.00 0.00 0.00 2.83
641 676 1.698506 AATCCAGCCCGAAAACAACA 58.301 45.000 0.00 0.00 0.00 3.33
642 677 2.812358 AAATCCAGCCCGAAAACAAC 57.188 45.000 0.00 0.00 0.00 3.32
643 678 3.118592 ACAAAAATCCAGCCCGAAAACAA 60.119 39.130 0.00 0.00 0.00 2.83
644 679 2.432510 ACAAAAATCCAGCCCGAAAACA 59.567 40.909 0.00 0.00 0.00 2.83
645 680 3.106242 ACAAAAATCCAGCCCGAAAAC 57.894 42.857 0.00 0.00 0.00 2.43
646 681 3.305744 GCTACAAAAATCCAGCCCGAAAA 60.306 43.478 0.00 0.00 0.00 2.29
647 682 2.230266 GCTACAAAAATCCAGCCCGAAA 59.770 45.455 0.00 0.00 0.00 3.46
648 683 1.816224 GCTACAAAAATCCAGCCCGAA 59.184 47.619 0.00 0.00 0.00 4.30
649 684 1.459450 GCTACAAAAATCCAGCCCGA 58.541 50.000 0.00 0.00 0.00 5.14
650 685 0.098728 CGCTACAAAAATCCAGCCCG 59.901 55.000 0.00 0.00 0.00 6.13
651 686 1.173913 ACGCTACAAAAATCCAGCCC 58.826 50.000 0.00 0.00 0.00 5.19
652 687 5.744666 TTATACGCTACAAAAATCCAGCC 57.255 39.130 0.00 0.00 0.00 4.85
653 688 7.190920 AGATTATACGCTACAAAAATCCAGC 57.809 36.000 0.00 0.00 0.00 4.85
654 689 9.477484 AGTAGATTATACGCTACAAAAATCCAG 57.523 33.333 11.66 0.00 39.48 3.86
655 690 9.472361 GAGTAGATTATACGCTACAAAAATCCA 57.528 33.333 11.66 0.00 39.48 3.41
656 691 8.923683 GGAGTAGATTATACGCTACAAAAATCC 58.076 37.037 11.66 7.06 39.48 3.01
657 692 8.923683 GGGAGTAGATTATACGCTACAAAAATC 58.076 37.037 11.66 0.00 39.48 2.17
658 693 7.876582 GGGGAGTAGATTATACGCTACAAAAAT 59.123 37.037 11.66 0.00 39.48 1.82
659 694 7.212274 GGGGAGTAGATTATACGCTACAAAAA 58.788 38.462 11.66 0.00 39.48 1.94
660 695 6.239402 GGGGGAGTAGATTATACGCTACAAAA 60.239 42.308 11.66 0.00 39.48 2.44
661 696 5.244626 GGGGGAGTAGATTATACGCTACAAA 59.755 44.000 11.66 0.00 39.48 2.83
662 697 4.768968 GGGGGAGTAGATTATACGCTACAA 59.231 45.833 11.66 0.00 39.48 2.41
663 698 4.202599 TGGGGGAGTAGATTATACGCTACA 60.203 45.833 11.66 0.00 39.48 2.74
664 699 4.338879 TGGGGGAGTAGATTATACGCTAC 58.661 47.826 0.00 0.00 37.77 3.58
665 700 4.662966 TGGGGGAGTAGATTATACGCTA 57.337 45.455 0.00 0.00 0.00 4.26
666 701 3.537795 TGGGGGAGTAGATTATACGCT 57.462 47.619 0.00 0.00 0.00 5.07
667 702 3.132467 GGATGGGGGAGTAGATTATACGC 59.868 52.174 0.00 0.00 0.00 4.42
668 703 3.705072 GGGATGGGGGAGTAGATTATACG 59.295 52.174 0.00 0.00 0.00 3.06
669 704 4.695606 TGGGATGGGGGAGTAGATTATAC 58.304 47.826 0.00 0.00 0.00 1.47
670 705 5.378165 TTGGGATGGGGGAGTAGATTATA 57.622 43.478 0.00 0.00 0.00 0.98
671 706 3.963525 TGGGATGGGGGAGTAGATTAT 57.036 47.619 0.00 0.00 0.00 1.28
672 707 3.736227 TTGGGATGGGGGAGTAGATTA 57.264 47.619 0.00 0.00 0.00 1.75
673 708 2.605825 TTGGGATGGGGGAGTAGATT 57.394 50.000 0.00 0.00 0.00 2.40
674 709 2.605825 TTTGGGATGGGGGAGTAGAT 57.394 50.000 0.00 0.00 0.00 1.98
675 710 2.369668 TTTTGGGATGGGGGAGTAGA 57.630 50.000 0.00 0.00 0.00 2.59
676 711 4.168088 ACTTATTTTGGGATGGGGGAGTAG 59.832 45.833 0.00 0.00 0.00 2.57
677 712 4.079443 CACTTATTTTGGGATGGGGGAGTA 60.079 45.833 0.00 0.00 0.00 2.59
678 713 2.933139 ACTTATTTTGGGATGGGGGAGT 59.067 45.455 0.00 0.00 0.00 3.85
679 714 3.299503 CACTTATTTTGGGATGGGGGAG 58.700 50.000 0.00 0.00 0.00 4.30
680 715 2.657459 ACACTTATTTTGGGATGGGGGA 59.343 45.455 0.00 0.00 0.00 4.81
681 716 3.031013 GACACTTATTTTGGGATGGGGG 58.969 50.000 0.00 0.00 0.00 5.40
682 717 3.954258 GAGACACTTATTTTGGGATGGGG 59.046 47.826 0.00 0.00 0.00 4.96
683 718 4.860022 AGAGACACTTATTTTGGGATGGG 58.140 43.478 0.00 0.00 0.00 4.00
684 719 6.653989 AGTAGAGACACTTATTTTGGGATGG 58.346 40.000 0.00 0.00 0.00 3.51
685 720 8.454106 CAAAGTAGAGACACTTATTTTGGGATG 58.546 37.037 0.00 0.00 37.78 3.51
686 721 8.164070 ACAAAGTAGAGACACTTATTTTGGGAT 58.836 33.333 0.00 0.00 37.78 3.85
687 722 7.444183 CACAAAGTAGAGACACTTATTTTGGGA 59.556 37.037 0.00 0.00 37.78 4.37
688 723 7.584987 CACAAAGTAGAGACACTTATTTTGGG 58.415 38.462 0.00 0.00 37.78 4.12
689 724 7.041098 AGCACAAAGTAGAGACACTTATTTTGG 60.041 37.037 0.00 0.00 37.78 3.28
690 725 7.865707 AGCACAAAGTAGAGACACTTATTTTG 58.134 34.615 0.00 0.00 37.78 2.44
691 726 9.555727 TTAGCACAAAGTAGAGACACTTATTTT 57.444 29.630 0.00 0.00 37.78 1.82
692 727 9.209175 CTTAGCACAAAGTAGAGACACTTATTT 57.791 33.333 0.00 0.00 37.78 1.40
693 728 8.368668 ACTTAGCACAAAGTAGAGACACTTATT 58.631 33.333 0.00 0.00 37.78 1.40
694 729 7.897864 ACTTAGCACAAAGTAGAGACACTTAT 58.102 34.615 0.00 0.00 37.78 1.73
695 730 7.286215 ACTTAGCACAAAGTAGAGACACTTA 57.714 36.000 0.00 0.00 37.78 2.24
696 731 6.163135 ACTTAGCACAAAGTAGAGACACTT 57.837 37.500 0.00 0.00 40.49 3.16
697 732 5.793030 ACTTAGCACAAAGTAGAGACACT 57.207 39.130 0.00 0.00 37.93 3.55
698 733 7.432838 GCTATACTTAGCACAAAGTAGAGACAC 59.567 40.741 22.17 9.02 46.80 3.67
699 734 7.481642 GCTATACTTAGCACAAAGTAGAGACA 58.518 38.462 22.17 1.64 46.80 3.41
700 735 7.917720 GCTATACTTAGCACAAAGTAGAGAC 57.082 40.000 22.17 14.11 46.80 3.36
716 751 9.938280 TGTTTAGTACAACTTCATGCTATACTT 57.062 29.630 0.00 0.00 32.64 2.24
720 755 8.883731 GTCATGTTTAGTACAACTTCATGCTAT 58.116 33.333 0.00 0.00 40.89 2.97
721 756 7.875554 TGTCATGTTTAGTACAACTTCATGCTA 59.124 33.333 0.00 0.00 40.89 3.49
722 757 6.710295 TGTCATGTTTAGTACAACTTCATGCT 59.290 34.615 0.00 0.00 40.89 3.79
723 758 6.797033 GTGTCATGTTTAGTACAACTTCATGC 59.203 38.462 0.00 1.96 40.89 4.06
724 759 8.087982 AGTGTCATGTTTAGTACAACTTCATG 57.912 34.615 0.00 4.00 40.89 3.07
725 760 8.677148 AAGTGTCATGTTTAGTACAACTTCAT 57.323 30.769 0.00 0.00 40.89 2.57
726 761 9.772973 ATAAGTGTCATGTTTAGTACAACTTCA 57.227 29.630 0.00 0.00 40.89 3.02
732 767 8.788806 CCCAAAATAAGTGTCATGTTTAGTACA 58.211 33.333 0.00 0.00 41.97 2.90
733 768 9.005777 TCCCAAAATAAGTGTCATGTTTAGTAC 57.994 33.333 0.00 0.00 0.00 2.73
734 769 9.005777 GTCCCAAAATAAGTGTCATGTTTAGTA 57.994 33.333 0.00 0.00 0.00 1.82
735 770 7.308348 CGTCCCAAAATAAGTGTCATGTTTAGT 60.308 37.037 0.00 0.00 0.00 2.24
736 771 7.021196 CGTCCCAAAATAAGTGTCATGTTTAG 58.979 38.462 0.00 0.00 0.00 1.85
737 772 6.487331 ACGTCCCAAAATAAGTGTCATGTTTA 59.513 34.615 0.00 0.00 0.00 2.01
738 773 5.300792 ACGTCCCAAAATAAGTGTCATGTTT 59.699 36.000 0.00 0.00 0.00 2.83
739 774 4.825085 ACGTCCCAAAATAAGTGTCATGTT 59.175 37.500 0.00 0.00 0.00 2.71
740 775 4.394729 ACGTCCCAAAATAAGTGTCATGT 58.605 39.130 0.00 0.00 0.00 3.21
741 776 5.064707 CCTACGTCCCAAAATAAGTGTCATG 59.935 44.000 0.00 0.00 0.00 3.07
742 777 5.183228 CCTACGTCCCAAAATAAGTGTCAT 58.817 41.667 0.00 0.00 0.00 3.06
743 778 4.563993 CCCTACGTCCCAAAATAAGTGTCA 60.564 45.833 0.00 0.00 0.00 3.58
744 779 3.937079 CCCTACGTCCCAAAATAAGTGTC 59.063 47.826 0.00 0.00 0.00 3.67
745 780 3.583966 TCCCTACGTCCCAAAATAAGTGT 59.416 43.478 0.00 0.00 0.00 3.55
746 781 4.189231 CTCCCTACGTCCCAAAATAAGTG 58.811 47.826 0.00 0.00 0.00 3.16
747 782 3.842436 ACTCCCTACGTCCCAAAATAAGT 59.158 43.478 0.00 0.00 0.00 2.24
748 783 4.482952 ACTCCCTACGTCCCAAAATAAG 57.517 45.455 0.00 0.00 0.00 1.73
749 784 7.202029 CCTTATACTCCCTACGTCCCAAAATAA 60.202 40.741 0.00 0.00 0.00 1.40
750 785 6.268387 CCTTATACTCCCTACGTCCCAAAATA 59.732 42.308 0.00 0.00 0.00 1.40
751 786 5.071384 CCTTATACTCCCTACGTCCCAAAAT 59.929 44.000 0.00 0.00 0.00 1.82
752 787 4.406649 CCTTATACTCCCTACGTCCCAAAA 59.593 45.833 0.00 0.00 0.00 2.44
753 788 3.962718 CCTTATACTCCCTACGTCCCAAA 59.037 47.826 0.00 0.00 0.00 3.28
754 789 3.052642 ACCTTATACTCCCTACGTCCCAA 60.053 47.826 0.00 0.00 0.00 4.12
755 790 2.515429 ACCTTATACTCCCTACGTCCCA 59.485 50.000 0.00 0.00 0.00 4.37
756 791 3.235750 ACCTTATACTCCCTACGTCCC 57.764 52.381 0.00 0.00 0.00 4.46
757 792 5.380900 AGTAACCTTATACTCCCTACGTCC 58.619 45.833 0.00 0.00 30.26 4.79
758 793 6.543831 TGAAGTAACCTTATACTCCCTACGTC 59.456 42.308 0.00 0.00 35.09 4.34
759 794 6.319911 GTGAAGTAACCTTATACTCCCTACGT 59.680 42.308 0.00 0.00 35.09 3.57
760 795 6.512415 CGTGAAGTAACCTTATACTCCCTACG 60.512 46.154 0.00 0.00 35.09 3.51
761 796 6.543831 TCGTGAAGTAACCTTATACTCCCTAC 59.456 42.308 0.00 0.00 35.09 3.18
762 797 6.662755 TCGTGAAGTAACCTTATACTCCCTA 58.337 40.000 0.00 0.00 35.09 3.53
763 798 5.513233 TCGTGAAGTAACCTTATACTCCCT 58.487 41.667 0.00 0.00 35.09 4.20
764 799 5.841957 TCGTGAAGTAACCTTATACTCCC 57.158 43.478 0.00 0.00 35.09 4.30
765 800 8.713737 AATTTCGTGAAGTAACCTTATACTCC 57.286 34.615 0.00 0.00 35.09 3.85
766 801 9.583765 AGAATTTCGTGAAGTAACCTTATACTC 57.416 33.333 0.00 0.00 35.09 2.59
770 805 9.367444 CTGTAGAATTTCGTGAAGTAACCTTAT 57.633 33.333 0.00 0.00 0.00 1.73
774 809 5.930569 ACCTGTAGAATTTCGTGAAGTAACC 59.069 40.000 0.00 0.00 0.00 2.85
777 812 7.889469 AGTTACCTGTAGAATTTCGTGAAGTA 58.111 34.615 0.00 0.00 0.00 2.24
791 826 7.589958 ATGGATGTTCTCTAGTTACCTGTAG 57.410 40.000 0.00 0.00 0.00 2.74
920 963 4.025401 CCAACACCAACGGAGCGC 62.025 66.667 0.00 0.00 0.00 5.92
921 964 4.025401 GCCAACACCAACGGAGCG 62.025 66.667 0.00 0.00 0.00 5.03
922 965 3.670377 GGCCAACACCAACGGAGC 61.670 66.667 0.00 0.00 0.00 4.70
923 966 3.353836 CGGCCAACACCAACGGAG 61.354 66.667 2.24 0.00 0.00 4.63
926 969 4.025401 GAGCGGCCAACACCAACG 62.025 66.667 2.24 0.00 0.00 4.10
927 970 2.594592 AGAGCGGCCAACACCAAC 60.595 61.111 2.24 0.00 0.00 3.77
928 971 2.594303 CAGAGCGGCCAACACCAA 60.594 61.111 2.24 0.00 0.00 3.67
931 974 2.980233 AAGCAGAGCGGCCAACAC 60.980 61.111 2.24 0.00 0.00 3.32
932 975 2.979676 CAAGCAGAGCGGCCAACA 60.980 61.111 2.24 0.00 0.00 3.33
933 976 2.970974 GACAAGCAGAGCGGCCAAC 61.971 63.158 2.24 0.00 0.00 3.77
934 977 2.669569 GACAAGCAGAGCGGCCAA 60.670 61.111 2.24 0.00 0.00 4.52
935 978 4.704833 GGACAAGCAGAGCGGCCA 62.705 66.667 2.24 0.00 0.00 5.36
936 979 4.704833 TGGACAAGCAGAGCGGCC 62.705 66.667 0.00 0.00 0.00 6.13
937 980 3.426568 GTGGACAAGCAGAGCGGC 61.427 66.667 0.00 0.00 0.00 6.53
941 984 1.673665 GCTGGGTGGACAAGCAGAG 60.674 63.158 0.00 0.00 0.00 3.35
1017 1074 3.803162 GAGCAAGAGGGGGAGGCC 61.803 72.222 0.00 0.00 0.00 5.19
1049 1106 4.316823 TGGTGGAGGAGGAGGCGT 62.317 66.667 0.00 0.00 0.00 5.68
1050 1107 2.856039 TAGTGGTGGAGGAGGAGGCG 62.856 65.000 0.00 0.00 0.00 5.52
1065 1122 3.481903 CGGCAGCTGCGTGTAGTG 61.482 66.667 31.19 11.38 43.26 2.74
1081 1141 2.997315 TGTGTGGAGGAGGGAGCG 60.997 66.667 0.00 0.00 0.00 5.03
1259 1319 1.610673 TTCTCGCCTTGCTCCCTCT 60.611 57.895 0.00 0.00 0.00 3.69
1260 1320 1.153469 CTTCTCGCCTTGCTCCCTC 60.153 63.158 0.00 0.00 0.00 4.30
1279 1339 2.685380 CTCCTCCACCGCCTCCTT 60.685 66.667 0.00 0.00 0.00 3.36
1527 1590 2.215942 AAGGCTAATTGGTGGTGGTC 57.784 50.000 0.00 0.00 0.00 4.02
1548 1611 3.068560 TGAAAAATGATGCAGCTTTGGC 58.931 40.909 2.53 0.00 39.06 4.52
1549 1612 4.312443 ACTGAAAAATGATGCAGCTTTGG 58.688 39.130 2.53 0.00 31.74 3.28
1567 1630 6.139048 TGCAGCAACTATATTACGTACTGA 57.861 37.500 0.00 0.00 0.00 3.41
1568 1631 5.107837 GCTGCAGCAACTATATTACGTACTG 60.108 44.000 33.36 0.00 41.59 2.74
1569 1632 4.982916 GCTGCAGCAACTATATTACGTACT 59.017 41.667 33.36 0.00 41.59 2.73
1570 1633 4.150098 GGCTGCAGCAACTATATTACGTAC 59.850 45.833 37.63 12.50 44.36 3.67
1571 1634 4.202172 TGGCTGCAGCAACTATATTACGTA 60.202 41.667 37.63 0.84 44.36 3.57
1572 1635 3.131396 GGCTGCAGCAACTATATTACGT 58.869 45.455 37.63 0.00 44.36 3.57
1573 1636 3.130633 TGGCTGCAGCAACTATATTACG 58.869 45.455 37.63 0.00 44.36 3.18
1574 1637 4.130118 ACTGGCTGCAGCAACTATATTAC 58.870 43.478 37.63 17.89 44.36 1.89
1575 1638 4.380531 GACTGGCTGCAGCAACTATATTA 58.619 43.478 37.63 12.20 44.36 0.98
1576 1639 3.209410 GACTGGCTGCAGCAACTATATT 58.791 45.455 37.63 13.94 44.36 1.28
1577 1640 2.804572 CGACTGGCTGCAGCAACTATAT 60.805 50.000 37.63 16.64 44.36 0.86
1578 1641 1.471501 CGACTGGCTGCAGCAACTATA 60.472 52.381 37.63 16.12 44.36 1.31
1579 1642 0.742281 CGACTGGCTGCAGCAACTAT 60.742 55.000 37.63 19.15 44.36 2.12
1582 1645 1.975363 GATCGACTGGCTGCAGCAAC 61.975 60.000 37.63 22.97 44.36 4.17
1592 1655 3.570125 TGGATACTTGCTAGATCGACTGG 59.430 47.826 1.04 0.00 37.61 4.00
1598 1661 7.496747 AGAAAGAGTTGGATACTTGCTAGATC 58.503 38.462 1.04 1.12 37.17 2.75
1619 1682 6.593268 TTGATTGATTCATGGCAGAAGAAA 57.407 33.333 0.00 0.00 33.34 2.52
1656 1719 8.507249 AGTAGTAGCAAAATGAACATGAAGAAC 58.493 33.333 0.00 0.00 0.00 3.01
1744 1827 2.618427 ATCAGGGGAGGGGAGCAGAG 62.618 65.000 0.00 0.00 0.00 3.35
1766 1853 9.760660 CTATGTTGTTGTATTAGTTTCTGAAGC 57.239 33.333 0.00 0.00 0.00 3.86
1806 1893 5.126067 GTTGTAAGATGGTCATGGTAGCAT 58.874 41.667 0.40 0.40 40.17 3.79
1811 1898 5.241403 TCTTGTTGTAAGATGGTCATGGT 57.759 39.130 0.00 0.00 0.00 3.55
1812 1899 6.573664 TTTCTTGTTGTAAGATGGTCATGG 57.426 37.500 0.00 0.00 0.00 3.66
1813 1900 7.920151 TGTTTTTCTTGTTGTAAGATGGTCATG 59.080 33.333 0.00 0.00 0.00 3.07
1814 1901 8.006298 TGTTTTTCTTGTTGTAAGATGGTCAT 57.994 30.769 0.00 0.00 0.00 3.06
1815 1902 7.397892 TGTTTTTCTTGTTGTAAGATGGTCA 57.602 32.000 0.00 0.00 0.00 4.02
1816 1903 7.757624 TGTTGTTTTTCTTGTTGTAAGATGGTC 59.242 33.333 0.00 0.00 0.00 4.02
1835 1922 6.812998 TCTACTACTAGCTGTGTTGTTGTTT 58.187 36.000 12.09 0.00 0.00 2.83
1853 1940 5.531659 GCAGTGTGGTTCTAGCTATCTACTA 59.468 44.000 0.00 0.00 0.00 1.82
1854 1941 4.339814 GCAGTGTGGTTCTAGCTATCTACT 59.660 45.833 0.00 0.00 0.00 2.57
1855 1942 4.339814 AGCAGTGTGGTTCTAGCTATCTAC 59.660 45.833 0.00 0.00 0.00 2.59
1857 1944 3.131933 CAGCAGTGTGGTTCTAGCTATCT 59.868 47.826 0.00 0.00 0.00 1.98
1858 1945 3.131223 TCAGCAGTGTGGTTCTAGCTATC 59.869 47.826 0.00 0.00 0.00 2.08
1861 1948 1.342074 TCAGCAGTGTGGTTCTAGCT 58.658 50.000 0.00 0.00 0.00 3.32
1862 1949 2.393271 ATCAGCAGTGTGGTTCTAGC 57.607 50.000 0.00 0.00 0.00 3.42
1863 1950 2.417933 GCAATCAGCAGTGTGGTTCTAG 59.582 50.000 0.00 0.00 44.79 2.43
1865 1952 1.242076 GCAATCAGCAGTGTGGTTCT 58.758 50.000 0.00 0.00 44.79 3.01
1866 1953 3.780925 GCAATCAGCAGTGTGGTTC 57.219 52.632 0.00 0.00 44.79 3.62
1883 2053 4.120331 GCCGCCATGTCAGGTTGC 62.120 66.667 0.00 0.00 0.00 4.17
1884 2054 3.803082 CGCCGCCATGTCAGGTTG 61.803 66.667 0.00 0.00 0.00 3.77
1997 2167 3.206957 GCGCAGAGATGCCATGCA 61.207 61.111 0.30 0.00 44.86 3.96
2020 2190 1.688772 CTGCTGGAGATGGGAAATGG 58.311 55.000 0.00 0.00 0.00 3.16
2022 2192 0.924823 AGCTGCTGGAGATGGGAAAT 59.075 50.000 0.00 0.00 0.00 2.17
2071 2244 4.573607 CGGTGAAGATGATGATCACAATGT 59.426 41.667 0.00 0.00 44.05 2.71
2078 2254 2.411904 GAGGCGGTGAAGATGATGATC 58.588 52.381 0.00 0.00 0.00 2.92
2113 2289 2.687610 CCCTGATGAAGCAGCCCCT 61.688 63.158 0.00 0.00 34.56 4.79
2145 2321 1.664321 ATGGCTACTGGTCGGACGAC 61.664 60.000 15.90 15.90 43.87 4.34
2151 2327 3.190874 GAGAGAAAATGGCTACTGGTCG 58.809 50.000 0.00 0.00 0.00 4.79
2163 2339 2.579860 AGACCTGGCCATGAGAGAAAAT 59.420 45.455 15.66 0.00 0.00 1.82
2322 2498 3.799420 GCTGCATTCTACCTAGAGAAACG 59.201 47.826 0.00 0.00 38.89 3.60
2325 2501 4.026744 AGTGCTGCATTCTACCTAGAGAA 58.973 43.478 5.27 0.00 39.71 2.87
2347 2523 7.230510 AGTTTTATCCTCATAACAACTGTTGCA 59.769 33.333 19.82 8.97 38.90 4.08
2358 2534 5.252547 TGTGCTGCAGTTTTATCCTCATAA 58.747 37.500 16.64 0.00 0.00 1.90
2363 2539 1.815003 GCTGTGCTGCAGTTTTATCCT 59.185 47.619 16.64 0.00 46.64 3.24
2364 2540 1.541147 TGCTGTGCTGCAGTTTTATCC 59.459 47.619 16.64 0.00 46.64 2.59
2432 2608 4.377897 AGTTGTTTGTGCTAGTGGTAGAC 58.622 43.478 0.00 0.00 0.00 2.59
2434 2610 5.294356 TGTAGTTGTTTGTGCTAGTGGTAG 58.706 41.667 0.00 0.00 0.00 3.18
2470 2647 8.267367 GCTGCTACGATAATAAGAAAACTACAC 58.733 37.037 0.00 0.00 0.00 2.90
2472 2649 8.348983 TGCTGCTACGATAATAAGAAAACTAC 57.651 34.615 0.00 0.00 0.00 2.73
2498 2676 3.244770 TGGGAAAATCTTACGGAAGCTGT 60.245 43.478 1.22 0.00 32.21 4.40
2499 2677 3.343617 TGGGAAAATCTTACGGAAGCTG 58.656 45.455 1.22 0.00 32.21 4.24
2500 2678 3.263425 TCTGGGAAAATCTTACGGAAGCT 59.737 43.478 1.22 0.00 32.21 3.74
2505 2683 3.343617 TGCTTCTGGGAAAATCTTACGG 58.656 45.455 0.00 0.00 0.00 4.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.