>input_sequence_76792
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----------------ATGGCGGCAGCGGCTGCGGCCTCCCCCTCTTGCTCATCCCCTCCATGGCACGCCTCCTCCTCCA
CCACTAC---ACGCAGCTGCCGCTCCCTCCTCCACACAGCCGCCGCCACACGGCCCGCCGCTTGCTCGAACGCACGCCGC
CTTGGCCGCCCGCGCGCGCTGCCGGAGACGGCGCTGGTGGCGGCCGGCGTGGCGGCGGCGGGGGTCGCGGCCGCCGCCGT
GCTCCTGCGGGGCGAGCGGAAGGCGGAGCAGTCGGCGCAGAGGGAGCAAGGCGAGAAGAAGGA---GGCGGTGGAGGAGT
GCTCCGCCTGCGGCGGGAGCGGCCTCTGCCCGCGGTGCAAGGGGGAGGGGTTCGTGTTCAAGGAGGTCGGCGAGGAGGCG
GCCGGCCGGGCGCGGCGGGCCGCCAAGAACATGGCCACCCGCTACACCGCCGGCCTCCCCACCAAGTGGACCTACTGCAA
CCGCTGCTCCTCCACCCGCTCCTGCACCGCCTGCGACGGCTCCGGCGCCGTCCCCGCCCGCGCCAAGACGACCACCACCA
ATTAG---------------------------------------------------------------------------
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>chr6A_1_TraesCS6A01G026400
ACTTGACACTCCAGCTAGATCAAGGAGGACAAGCATCAAACAAATCTTTGTCTTGGCATGAGAGGAACGCTAGGACCGCT
GCCTTTATTAGGCAAAACAACCCCCACCCACGTCGTCGCCTGCCGGCTCCCAACAGCAGGACGGAGATCTGAGCAGACAC
CGCCGTCCCCACCTGCACCACGCGGAGATGAGGGGCTTAGCCGTTTCGAGTCCCCCGAGCCAGGCGTCGTGCCGCCCTCG
CGGCCACAGCAGTCACCATGGTCA-------------------CCGCCCCGCCTTCCGTCTCCACCGCATGCACCTCGAC
GTCTAGGGCCGCCGATTTGCAGCAGCTGGAGAACCCA-CGCGTGGGGATGAAAGGCCTGCGCCGCCACCCGCTGCGCGAG
GAGATGAAGGCCAGCCGCTGCCGTCAGCCACGCAGGCTTAGCCCAGTGA----------TGACGGTGGGGGACGGAGGTG
GAGGGGGTGGGG---GCGGCGGCGGCTGAGATCTGGATCGCCCGAGCCTCCCC-TGGAGCGACGCTAGCGAGGAGCTCAA
CAAGAATAATAATCTTTGAGTATGTGTGCGTGTGCAAATTTTCATCGATACACATATTTATATGCGATGTATAAAGAACA
CAAATACATGAAACAAAATGGACTTGTATCTATCTTGTTGTTTTCGGGCTGGATTTTTGTAGCGTATAATCTACTCCCCC
ATCCCAAAATAAGTGTCTCTACTTTGTGCTAAGTATAGCATGAAGTTGTACTAAACATGACACTTATTTTGGGACGTAGG
GAGTATAAGGTTACTTCACGAAATTC-TACAGGTAACTAGAGAACATCCATATGTACTCATATGTAAAATTTCTTTTCTT
TTTGAAACTTTTAAGCAACATTTTTGAATG-------TTTTTTTAAATACCGGTCTCCGTAGAGCCCGGGTGGCAAGACG
CCGCGCTCCGTTGGTGTTGGCCGCTCTGCTTGTCCACCCAGCTGAGGGGATAATGAAGC--------------AGATAGA
CTCGATGGCCATGGGCATGGCGGCAGCGGCTGCGGCCTCCCCCTCTTGCTCATCCCCTCCATGGCACGCCTCCTCCTCCA
CCACTAC---ACGCAGCTGCCGCTCCCTCCTCCACACAGCCGCCGCCACACGGCCCGCCGCTTGCTCGAACGCACGCCGC
CTTGGCCGCCCGCGCGCGCTGCCGGAGACGGCGCTGGTGGCGGCCGGCGTGGCGGCGGCGGGGGTCGCGGCCGCCGCCGT
GCTCCTGCGGGGCGAGCGGAAGGCGGAGCAGTCGGCGCAGAGGGAGCAAGGCGAGAAGAAGGA---GGCGGTGGAGGAGT
GCTCCGCCTGCGGCGGGAGCGGCCTCTGCCCGCGGTGCAAGGGGGAGGGGTTCGTGTTCAAGGAGGTCGGCGAGGAGGCG
GCCGGCCGGGCGCGGCGGGCCGCCAAGAACATGGCCACCCGCTACACCGCCGGCCTCCCCACCAAGTGGACCTACTGCAA
CCGCTGCTCCTCCACCCGCTCCTGCACCGCCTGCGACGGCTCCGGCGCCGTCCCCGCCCGCGCCAAGACGACCACCACCA
ATTAGCCTTAGCCAAAGCTGCATCATTTTTCAGTACGTAATATAGTTGCTGCAGCCAGTCGATCTAGCAAGTATCCAACT
CTTTCTTCTGCCATGAATCAATCAATCAATCAAGGGGAGT------TCTTCATGTTCATTTTGCTACTACTCATGTAT--
G--------TATATATGATTATATGTCCACCCAGGATCCATCCTGTCAGG----GAGGGAAGGATACTCTGCTCCC----
CTCCCCTGATCTGCTTCAGAAACTAATACAACAACATAGGATGGGATGCTACATGCTACCATGACCATCTTACAACAAGA
AAAACAACAACACAGCTAGTAGTAGATAGCTAG-----------------------------------------------
------------------------------------AACCACACTGCTGATTGCAACCTGACATGGCGGCGCCGGTGCTA
AAACAGCCCTTCTGGGCCGAGTGCGCATCGTCGCCTCACCTTGGCGTCGCAGCCACGGTTCCCGCCGTTCATTGTCAGAG
GGTGGGTGCATGGCATCTCTGCGCCGCCGCCATTTCCCATCTCCAGCAGCTGGTTCAGGTTGTTGTC---AGCCTTCTTC
ATGACATT---GTGATCATCATCTTCACCGCCTCCTGCGCCCGGGGCCAGGGGCTGCTTCATCAGGGTGGTCTGCTGCTC
GTCGTCCGACCAGTAGCCATTTTCTCTCATGGCCAGGTCTAGGTACTCCTCGTCCGACTTGGTCGACTCCTCGTCCACCG
ACCCTGCTTCCTCCATCTGCTTTGTGTTTTTTCATCAAGGACAATAGAATGGACAATCAGTTATAAGTACCCTGAACTTT
CCTATTCGACTTAATGGCGTTTCTCTAGGTAGAATGCAGCACTGCAACAGTTGTTATGAGGATAAAACTGCAGCACAGCA
TAATCATTTTTTCATCTACAGCAAAGAATGAGGCTGACTCCAAATTTGTCTACCACTAGCACAAACAACTACAAACTTC-
ACCTCGGTGTAGTTTTC-TTATTATCGTAGCAGCAACAGCTTCCGTAAGATTTTCCCAGAAGCAAGTTCATGTTATTTCT
>chr3B_1
ACTTGACACTCCGGCCAGATCAAGGAGGACAAGCATCAAGCAGATCTTCGTCTTCGTGTGAGAGGAACCCTAGGACCGCC
GCCTTTATTAGGCAGAACGACTGGCCCCCACGCCGTCGCCCGCCGGCTCCCAACAGCAGGCCAGAGAT-TGAGCAGACAC
CGCCTTCACCACCCGCACCAGGCGGAGATGAGGGGCTTAGCCGCTCCGAGTCCCCCGAACCAGGTGCCGTGCCGCCCTCG
CGGCCACAACAGTCACCAAGGTCGCCAAAGAAGACCGGGGCCGCCGCCCCGGCATCCGTCTCCGCCGCGTGCACCTCGAC
ATCCAGGGCCGCCAATCTGCAGTAGTCGGAGATCCCACCGTGTGGGGATGAAGAGCCCGTGCCGCCACTCGTCGTGCGAG
GAGATGAAGGCCCGCCGCCGCCGTCAGCTGCGCAGGCTTAGCCTGGTGGCTTCCTCCGGCGGCGGTGGGGGGCAGAGGTG
GAAGGGGTGGGGGCAGCGGCGGCGGCTGAGATCTGGATCGCCCGAGCCGCCCCCTGGAGCGACGCGAGCGA---------
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>chr3A_1
ACTTGACACTCTGGCCAGATCAAGGAGGACACGCATCAAGCAGATCTTCGTCTTGGCGCCAGAGGAACCCTAGGACCGGC
GCCTTTATTAGGCAGAACGAT--GCCCCCACGTCGTCGCCTGCCGGCTCCCAACAGCAGGCCGAAGATCTGAGCGGACAC
CACCGTCACCACCCACACCATGCGGAGGTGAGGGGCTTAGCCGCTCCGAGTTGCCCGAACCAGGCGTCGTGCCATCCTCG
CGGCCACAACGGTC---------GTCGAAGAAGACCAGGGCCGCCGCCCCGACGCCCGTCTCCGCCGCGTGCACCTCGAC
GTCCAGAGCTGTTGATCCACAACAGCCGAAGATCCCGTCGCATGGGAATGAAAGGCCCGTGCCGCCACCCGCCGCGCAAG
GAGATGAAGGCCCGTCGCCATCGTCAGCCGCAGAGGCTTAGCCTAGTGACTTCCTCCGACGGTGGTGGGGGACGAAGGTG
GAAAGGGTGGGG---GCGGCGGCGGATGAGATCTGGATCGCCCGAGCCGCCCCCTAGAGCGAC-----------------
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>chr7D_1
ACTTGACACTCTGGCCAGATCAAGGAGGACAAGCATCAAGCAGATCTTCATCTCGGCGCGAGAGGAACCCTAGGACCGCC
GCCTTTATTAGGCAGACCGAC-GGCCCCCACGCTATCGCCTGCCGACTCCCAACAGCAGGCCAGAGATCTGAGCGGACAC
CGCCATCACGACCCGCACCACGCGGAGATGAGGATCTTAGCCACGTCGAGTCCT--------------------------
---CCACAACGGTCGCCAAGGTCGCCGAAGAAGACCGAGGCAGCCGCCCCAGCGTCCTTCTCCGCTGCGTGCACCTCGAC
GTTCAAGGCAGCCAGTCTGCAGCAGCCGGAGATCCCGCCGCGTGGGGATGAAAGGCTCGCGCCGCCACCCGCCATGCGAG
GAGATGAAGGCCCGCCGCCGCTGTCAGCCGCGTGGGCTTAGCCAGGTGACTTCCTCCAGCAACGGTGGGGGACGGAGGTG
GAGGGGGTGGGA---GCGGCAGCGACTGAGATCTGGATCGCCCGAGCAGCCTCCTGGAGCGACGCGAGC-----------
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>chr4A_1
ACTTGACACTCCGGCCAGATCAAGGAGGACAAGCATCAAGCAGATCTTCATCTCAACACGAGAGGAACCCTAGGACCGCC
GCCTTTATTAGGCAGAACGAC-GGCCCCCATGCTGTCGCCTGCCGGCTCCCAACAACAGGTCAGAGATCTAAGCGGACAC
CGCCATCACCACTCACACCACGCTGAGATGAGGAGCTTAACCACGCCAAGTCAT--------------------------
---CCACAACGGTCACCAAGGTCGACAAAGAAGACCGAGGCAGCCGCCCCGGCGTCCGTCTCCGCTGCGTGCACCTCGAT
GTTGAAGGCAGCCAGTCTGAAGCAGCCGAAGATCCTGCCGCATGGGGTTGAAAGGCTCGCGCCGCCACCCACCACATGAG
GAGATGAAGGCCCGCCGCCGCCGTCAGCCGCACAGGCTTAGCCTGGTGACTTCCTCTAGCGGCAGCGGGGGGCGGAGGTG
GAGGGGGTGGGG---GCGGCGGCGGCTGAGATCTGGATCGCCTGAGCTGCCTCCTCGAGCGACGCGAGCGA---------
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>chr1D_8
ACA-------CCAGCCAGATCAAGGAGGACAAGCATCAAGCAGATCTTCGTCTTTGTGCGAGAGGAACCCTAGGACCGCC
GCCTTTATTAGGCAGAACGAC-GGCCCCCGCGCCGTCGCCCGCCAGCTCCAAGCAGCAGGGCGGAGATCTAAGCGGGCAC
CGTCGTCATCACACGCACCATGTGGAGATGACGGGATTTGTCGCTCCAAGTCCCCCGAACCAGGCGTTGTGCCGCCCTTG
TGGCCACAGCGGTCGCCAAGGTTGTCGAAGAAGACCGGGCACGCCGCCCCAGCGTCCGTCTCCGCCACGTGCACCTCGAC
ATCCAGGGCTGCTGATCAGCAGCAGCGAGAGGTCCTGTCGTGTGGGGATGACAGGCCCGTGCTGCCACTCGCCGCGCGAG
GAGCTGAAGGCCCGTCGCCGCCGTCAGCCACGCAGGCTTAGCCCGGTGACTTCCTCCGGTGGCGATGGGGGACTTAGGTG
GAGGGGGTGGGG---GCGGCGGCGGCTGAGGTCTAGATCGCCCG------------------------------------
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>chr6D_772
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-----TAATGTCACTTCACGAAATTTTTACAGGTAATTAGAGAACACTCATATGTACTCATATGTAA-ATCTCTTTTCTT
TTTGAAACTTTTAACCAACACTTTTGAACGTATATTTTTTTTTTAAATACCGGTCTCCATAGAGCCCGGGTGCCAAAACC
CCCGCACT------------CCGTTCTGCTTGTCCACCCAGCTGAGGCGATAATGAAA---------AGAGATAGATAGA
TTCGATGGCCATGGGCATGGGCAT---G---GCAGCCTCCCCCTCTTGCTCCTCCCCTCCATGGCCAGCCTCCTCCTCCG
CACGCAGCCGCAGCAGCAGCTGTTCCCTCCTCTACACAGCCACCACCACTCGCCCTTCCGCTTCTCCGAACGCGCGCCGC
CTTGGCCGCCCGCGCGCGCTGCCGGAGACGGCGCTGGTGGCGGCCGGGGTGGCGGCGGCGGGGGTCGCCGCCGCCGCCGT
GCTCCTGCGGGGCGACCGGAAGACGGAGCGGCCGGCGCCCGGGGAGCAAGGCGAGAAGCAGGCGGCGGCGGTGGAGGAGT
GCCCCGCCTGCGGCGGGAGCGGCCTCTGCCCGCGGTGCAAGGGGGAGGGCTTCGTGTTCAAGGAGGTCGGCGAGGAGGCG
GCCGGCCGGGCGCGGCGGGCCGCCAAGAACATGGCCACCCGCTACACCGCCGGCCTCCCCACCAAGTGGACCTACTGCAA
CCGCTGCTCCTCCACCCGCTCCTGCACCGCCTGCGACGGCTCCGGCGCCGTCCCCGTCCGCGCTAAAACCACCACCACCA
ATTAGC-------AAAGCTGCCTCTTTTTCAGTAG-------TAATTTCTGCAGTCAGTCAATCTAGCAAGTATCCAACT
G-TTCTTCTGCCATGAATCAATCAATCAA----GGGGAAT------TCTTCATGTTCATTTTGCTACTACTCATGTATAT
G--------TATATATAATTATGTGTCCATCCATGATCCATCCTGTCAGG----GAGGGAAGGATAGTCTGCTCCT----
CTCCCCTGATCTACTTCAGAAACTAATACAACAGCATATGATGGGATGCTACTTGCT------ACCATCTTACAACAAGA
ACAACAACACAGCTACAGTAGAT--------------------------------------ATGATGGGATCCAGCAGCA
CCTACTGGATCATGGGAACTTCAGGCCCCACTCCACAACCACACTGCTGATTCGCAACCGACATGGCGGCACCGGTTCTA
CAACAGCCCTTCCGGGCCGAGTGCGCATCGTCGCCTCACCTTGGCGTCGCAGCCACGGTTCCCGCCGTTCATTGTCAGAG
GGTGGGCGCATGGCATCTCTGCGCCGCCGTCGTTTCCCATCTCCAGCAACTGGTTCAGCTTGTTGTC---AGCCTTCTTC
ATGGCATT---GTTATCATCATCTTCACCGCCTCCTGCGCCCGGGGCCGGGGGCTGCTTCATCAGGCTGGTCTGCTGCTC
ATCGTCGGACCAGTAGCCGTTTTCTCTCATGGCCAGGTCTAGGTACTCCTCGTCCGACTTGGTCGACTGCTCGTCCACCG
ACCCTGCTTCCTCCATCTGCTTCGTGTTTTTTCATCAAGGACAGAAGAATGGACAATCAGTTATAAGTACCCTGAACTTT
CCTATTCGACTCAATGGTGTCTCTCTAGGTAGAATGCAGCACCGCAACAGTTGGTATGTTGACATACTCAT---------
------TTTATTCATCTACAGCAAAGAATGAGGCTGACTTCAAATTTTTGTACCACTAGCACAAGCCACTACAAACTTT-
ACCTCATTATAGTTTTCTTTATTATCGTAGCAGCA---GCTTTCGTAAGATTTTCCCAGAAGCAAGTTAACGTATTTCT-
>chr6B_949
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------------------------------TGTCCACCCAGCTGAGGGGATAATGAAGCAGAGAGGCAGAGATAGATAGA
TTCGATGGCCATGGCCATGGCAGCAGCG---GCAGCCTCCCCCTCTTGCTCACCGCCTCCATGGCCAGCCTCCTCCTCCA
CACGCAC---CAGCAGCAGCTGCTCACTCCTCTACACAGCCACGACCGCACGGCCAGCCGCTTCTCCGAGCGCGCGCCGC
CTCCGCCGCCCACGCGCGCTGCCGGAGACGGCGCTGGTGGCGGCCGGGGTGGCGGCGGCGGGGGT---GGCCGCCGCCGT
GCTCCTGCGGGGCGACCGGAAGGCGGAGCAGCCGGCGCCCACA---------GAGAAGCAGGA---GGCGTCGGAGGAGT
GCTCCGCGTGCGGCGGGAGCGGCCTCTGCCCGCGGTGCAAGGGGGAGGGGTTCGTGTTCAAGGAGGTCGGCGAGGAGGCG
GCCGGCCGGGCGCGGCGGGCCGCCAAGAACATGGCCACCCGCTACACCGCCGGCCTCCCCACCAAGTGGACCTACTGCAC
CCGCTGCTCCTCCACCCGCTCCTGCACCGCCTGCGACGGCTCCGGCGCCGTCCCCTTCCGCGCCAAGACCACCACCACCA
CCAATTAG----CAAAGCCGCCTCTTTTTCAGTAG-------CAATCGCCGC-------------AGCAAGTATCCAACT
C-TTCTTCTGCCATGAATCGATCGATCAATCAAGGGGAATTCTTCATCTTCATCTTCATCTTGCTACTATTCATGTATTG
TAGTATATATATATATGATTATATGTCCATCCATGATCCATCCTGTCAGGGAGTGAGGGGAGGACAGTCTGCTCCCCTCC
CTCCCCTGATCTACTTCAGAAACCAGTACAACAACATATGATGGGGTGCTACTCGCT------ACCATCTTGCAACAAGA
AGAACAACAACACAGCTAGATAGCTATCTGTCTACGTAGCTTAACCCAAGCTCAGGTGAGGATGCTGGGATCTAGCAGCA
CCTATTGGATGGGAACCCAGATGGCAGTGCG------------------------------------------GGTGCTA
CAACAGCCCTTCCGGGCCGAGTGCGCACCGTCTCATCGG--------------CACGGTTCCCGCTGTTCATCGTGAGAG
GGTGGGCGCACGGCATCTCCGCGCCGACGTCGTTTCCCATCTCCAGCAGCTGGTTCAGGTTGTTGTCGTCAGTCTTCTTC
ATGGCATTATCGTCATCGTCATCATCGCCGCCTCCTGCGCCGGGGTTCGGGGGCTGCTTCATCGGAGTGGTCTGCTGCTC
ATCGTCTGACCAGTAGCCGTTCTCTCTCATGGCCAGGTCGTCGTACTCCTCGTCCGACTTGGTCGACTGCTCATCCACTG
ATCCTGCTTCCTCCATCTGCTTCAT-------------GGACAAAAGAATGGAAAATCAGTTATAAGTACCCTAAACTTT
CCTGTTCGACTTAATGGTGTCTCTCTAGCTGGAATGCAGCACCGCAACAGTTGGTATGTCGATAAAACTGCAGCACGGCA
TACTCATTTTTTCATCTACAGCAAAGAATGAGGCTGACTCCAAATTTTTGTACCACTAGCACAAACAACTATAAACTTTT
ACCTCGTTATAGTTTTC-TTATTATCGTAGCAGCA---GCTTTCGTAAGATTTTCCCACAAACAAATTTACGTTATTTCT
>SNPs
---------------S-----------------------S--S-----S-------------------S----------S
--------------S---S--SSS-S----------------------------------S-------------------
-------S-----S-----------------------------S--------------S---------------------
------------------S----S---------------------------S-S---------S----S-----------
---S------------S---------S-----S------------------------S--------------S-------
------------S-----S-------------------------------------------------------------
------------------------------------------------S----------------S-----SSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSS---S--S-------------S----------S---------SS-------------------S--S---------
--------------S-----S-------S-----------------------------S-------------S---S--S
--SSSSSSSSSSSSSSSSSS---S--------------------------------------------------------
S--------------------S------SSS--S-------------------------------SS-------------
-SSSS-----SS-----S--S-----------S--------S--S----------S-------SSS-------S------
-----------------------------------------------S--------------------------------
---------------S---------------S------SS------------------S---------------------
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--------------------------------------------------------S------------S----------
------SSSSSS---------S--S----SSSSSSSSSSSSS--S---------S-----S-------------------
-S------------------------------------S-----------------------------------------
-----------------------------S---S--------------------------------S-------------
------------S-------------------------S-------------S----SSSSSS-----------------
-S-----------------SSS-SS--SSS-SS-----------------------------------------------
----------------------------------------------------SSS-S-S-----------S---------
S-----------S-------------------------------------------------------------------
------S----------------------S-S------------------------------------------------
---S---------S----------------------------------S-------------------------------
S-----S-----------S-------------------------------------------------S-----------
----------------------S---------------------S-----------------------------------
-----------------S--S---------------------S----------S----SS----------------S---
--S--------------------------------------------S-S----------------------------S-
------S-S--------------------------SSS----S-------------------------S-S---------
>forward_704
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--------------------------------------------CGGGCTGGATTTTTGTAGCG----------------
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>reverse_1642
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-----------------------------------------ATAGTTGCTGCAGCCAGTCG-------------------
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