Multiple sequence alignment - TraesCS5D01G542900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G542900 chr5D 100.000 2479 0 0 1 2479 553422987 553420509 0.000000e+00 4578.0
1 TraesCS5D01G542900 chr5D 90.445 1057 62 16 950 1989 553002684 553001650 0.000000e+00 1356.0
2 TraesCS5D01G542900 chr5D 94.970 656 23 4 1 647 553003714 553003060 0.000000e+00 1020.0
3 TraesCS5D01G542900 chr5D 92.508 307 20 3 1758 2063 553420928 553420624 1.050000e-118 436.0
4 TraesCS5D01G542900 chr5D 92.508 307 20 3 2060 2364 553421230 553420925 1.050000e-118 436.0
5 TraesCS5D01G542900 chr5D 93.960 149 4 2 693 836 553003064 553002916 1.150000e-53 220.0
6 TraesCS5D01G542900 chr5D 74.603 441 76 24 950 1360 553462894 553463328 7.100000e-36 161.0
7 TraesCS5D01G542900 chr5D 75.703 391 51 21 1001 1364 553010143 553009770 3.300000e-34 156.0
8 TraesCS5D01G542900 chr5D 95.506 89 4 0 862 950 553002854 553002766 2.570000e-30 143.0
9 TraesCS5D01G542900 chr5D 94.937 79 4 0 2286 2364 553001531 553001453 9.310000e-25 124.0
10 TraesCS5D01G542900 chr5D 87.037 108 12 2 2372 2477 443339408 443339515 1.200000e-23 121.0
11 TraesCS5D01G542900 chr5D 75.824 273 44 12 1106 1364 553464880 553464616 4.330000e-23 119.0
12 TraesCS5D01G542900 chr5D 88.542 96 10 1 2383 2477 443333680 443333775 5.600000e-22 115.0
13 TraesCS5D01G542900 chr5D 91.250 80 7 0 1985 2064 553001531 553001452 2.610000e-20 110.0
14 TraesCS5D01G542900 chr5D 80.380 158 17 5 1101 1247 553468250 553468096 9.380000e-20 108.0
15 TraesCS5D01G542900 chr4A 76.607 389 49 19 1003 1364 615117654 615118027 2.530000e-40 176.0
16 TraesCS5D01G542900 chr3D 92.079 101 6 2 2378 2477 586302375 586302276 9.240000e-30 141.0
17 TraesCS5D01G542900 chr3D 90.625 96 8 1 2381 2475 357730262 357730357 2.590000e-25 126.0
18 TraesCS5D01G542900 chrUn 92.708 96 6 1 2383 2477 22759827 22759732 1.200000e-28 137.0
19 TraesCS5D01G542900 chr5B 91.837 98 7 1 2381 2477 462116205 462116302 4.300000e-28 135.0
20 TraesCS5D01G542900 chr5B 76.793 237 34 10 1001 1228 697493443 697493667 2.020000e-21 113.0
21 TraesCS5D01G542900 chr5B 82.946 129 13 4 1106 1228 697349242 697349367 9.380000e-20 108.0
22 TraesCS5D01G542900 chr2D 91.667 96 7 1 2383 2477 381559879 381559974 5.560000e-27 132.0
23 TraesCS5D01G542900 chr2D 95.122 41 2 0 862 902 45565535 45565575 5.720000e-07 65.8
24 TraesCS5D01G542900 chr1B 88.235 102 10 2 2378 2477 589076047 589076148 1.200000e-23 121.0
25 TraesCS5D01G542900 chr3B 87.755 98 11 1 2381 2477 685819007 685819104 2.020000e-21 113.0
26 TraesCS5D01G542900 chr6A 95.652 46 2 0 862 907 100300455 100300500 9.510000e-10 75.0
27 TraesCS5D01G542900 chr6A 97.561 41 1 0 862 902 100300554 100300514 1.230000e-08 71.3
28 TraesCS5D01G542900 chr2A 97.674 43 1 0 860 902 715416534 715416576 9.510000e-10 75.0
29 TraesCS5D01G542900 chr4D 97.561 41 1 0 862 902 465124193 465124153 1.230000e-08 71.3
30 TraesCS5D01G542900 chr4B 97.561 41 1 0 862 902 581904239 581904279 1.230000e-08 71.3
31 TraesCS5D01G542900 chr7D 95.349 43 2 0 862 904 100233211 100233169 4.420000e-08 69.4
32 TraesCS5D01G542900 chr2B 95.238 42 2 0 861 902 184776815 184776856 1.590000e-07 67.6
33 TraesCS5D01G542900 chr7B 97.297 37 1 0 125 161 701866902 701866938 2.060000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G542900 chr5D 553420509 553422987 2478 True 1816.666667 4578 95.005333 1 2479 3 chr5D.!!$R3 2478
1 TraesCS5D01G542900 chr5D 553001452 553003714 2262 True 495.500000 1356 93.511333 1 2364 6 chr5D.!!$R2 2363

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
945 995 0.17895 TCCAGCACCTCTGTCAGTCT 60.179 55.0 0.0 0.0 41.25 3.24 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2054 2201 0.112218 TTGGAGTGGGGACATGTTGG 59.888 55.0 0.0 0.0 46.14 3.77 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
41 42 2.117156 CGCCTTTCATGGGCTCCTG 61.117 63.158 9.42 0.00 46.73 3.86
103 104 2.488153 GCGAGGCAAAAAGTGATTAGGT 59.512 45.455 0.00 0.00 0.00 3.08
106 107 4.142816 CGAGGCAAAAAGTGATTAGGTGAG 60.143 45.833 0.00 0.00 0.00 3.51
120 121 0.737715 GGTGAGACTGCCGATGTGAC 60.738 60.000 0.00 0.00 0.00 3.67
158 159 2.287977 AAGGGTACTCTTTGGTTGGC 57.712 50.000 0.85 0.00 0.00 4.52
190 192 7.445707 AGAACACTCACCTTATCTTCTTTTTCC 59.554 37.037 0.00 0.00 0.00 3.13
257 259 9.383519 TCTCTTTTTATTTAGCGATCATCAAGT 57.616 29.630 0.00 0.00 0.00 3.16
317 319 9.950680 AAATATATTCTAAATGACCAACAAGCG 57.049 29.630 0.00 0.00 0.00 4.68
323 325 6.205784 TCTAAATGACCAACAAGCGAAAAAG 58.794 36.000 0.00 0.00 0.00 2.27
326 328 3.506810 TGACCAACAAGCGAAAAAGTTG 58.493 40.909 0.00 0.00 40.63 3.16
405 407 2.161808 AGTCGTCACTCAATGTACGAGG 59.838 50.000 0.00 0.00 44.18 4.63
448 450 6.261381 ACGAAGCTGAGGTTAACATGTTAAAA 59.739 34.615 28.05 10.80 36.86 1.52
539 548 1.632409 AGATGTGAAGTCAGGGCATGT 59.368 47.619 0.00 0.00 0.00 3.21
547 556 2.187685 CAGGGCATGTAGAGCGCA 59.812 61.111 11.47 0.00 46.12 6.09
568 577 0.247814 CCGTGCGTTCATGATGCTTC 60.248 55.000 18.04 11.63 41.04 3.86
606 615 2.172717 AGCAGGTGTACAGAACCAAACT 59.827 45.455 0.00 0.00 40.40 2.66
643 652 4.347607 CTCAAGGTCCCAATTTTCCATCT 58.652 43.478 0.00 0.00 0.00 2.90
644 653 4.750941 TCAAGGTCCCAATTTTCCATCTT 58.249 39.130 0.00 0.00 0.00 2.40
645 654 5.154418 TCAAGGTCCCAATTTTCCATCTTT 58.846 37.500 0.00 0.00 0.00 2.52
646 655 5.606329 TCAAGGTCCCAATTTTCCATCTTTT 59.394 36.000 0.00 0.00 0.00 2.27
647 656 5.488262 AGGTCCCAATTTTCCATCTTTTG 57.512 39.130 0.00 0.00 0.00 2.44
648 657 5.154418 AGGTCCCAATTTTCCATCTTTTGA 58.846 37.500 0.00 0.00 0.00 2.69
649 658 5.606329 AGGTCCCAATTTTCCATCTTTTGAA 59.394 36.000 0.00 0.00 0.00 2.69
650 659 6.273026 AGGTCCCAATTTTCCATCTTTTGAAT 59.727 34.615 0.00 0.00 0.00 2.57
651 660 6.595326 GGTCCCAATTTTCCATCTTTTGAATC 59.405 38.462 0.00 0.00 0.00 2.52
652 661 7.160726 GTCCCAATTTTCCATCTTTTGAATCA 58.839 34.615 0.00 0.00 0.00 2.57
653 662 7.332678 GTCCCAATTTTCCATCTTTTGAATCAG 59.667 37.037 0.00 0.00 0.00 2.90
654 663 6.093082 CCCAATTTTCCATCTTTTGAATCAGC 59.907 38.462 0.00 0.00 0.00 4.26
655 664 6.651643 CCAATTTTCCATCTTTTGAATCAGCA 59.348 34.615 0.00 0.00 0.00 4.41
656 665 7.360607 CCAATTTTCCATCTTTTGAATCAGCAC 60.361 37.037 0.00 0.00 0.00 4.40
657 666 4.424061 TTCCATCTTTTGAATCAGCACG 57.576 40.909 0.00 0.00 0.00 5.34
658 667 3.673902 TCCATCTTTTGAATCAGCACGA 58.326 40.909 0.00 0.00 0.00 4.35
659 668 3.686241 TCCATCTTTTGAATCAGCACGAG 59.314 43.478 0.00 0.00 0.00 4.18
660 669 3.438087 CCATCTTTTGAATCAGCACGAGT 59.562 43.478 0.00 0.00 0.00 4.18
661 670 4.631377 CCATCTTTTGAATCAGCACGAGTA 59.369 41.667 0.00 0.00 0.00 2.59
662 671 5.220548 CCATCTTTTGAATCAGCACGAGTAG 60.221 44.000 0.00 0.00 0.00 2.57
663 672 3.679980 TCTTTTGAATCAGCACGAGTAGC 59.320 43.478 0.00 0.00 0.00 3.58
664 673 2.741759 TTGAATCAGCACGAGTAGCA 57.258 45.000 0.00 0.00 0.00 3.49
665 674 1.996292 TGAATCAGCACGAGTAGCAC 58.004 50.000 0.00 0.00 0.00 4.40
666 675 0.917259 GAATCAGCACGAGTAGCACG 59.083 55.000 0.00 0.00 0.00 5.34
667 676 1.078759 AATCAGCACGAGTAGCACGC 61.079 55.000 0.00 0.00 0.00 5.34
668 677 2.212900 ATCAGCACGAGTAGCACGCA 62.213 55.000 0.00 0.00 0.00 5.24
669 678 2.126307 AGCACGAGTAGCACGCAG 60.126 61.111 0.00 0.00 0.00 5.18
670 679 3.181967 GCACGAGTAGCACGCAGG 61.182 66.667 0.00 0.00 0.00 4.85
671 680 2.258591 CACGAGTAGCACGCAGGT 59.741 61.111 0.00 0.00 0.00 4.00
672 681 1.372997 CACGAGTAGCACGCAGGTT 60.373 57.895 0.00 0.00 0.00 3.50
673 682 0.944311 CACGAGTAGCACGCAGGTTT 60.944 55.000 0.00 0.00 0.00 3.27
674 683 0.944311 ACGAGTAGCACGCAGGTTTG 60.944 55.000 0.00 0.00 0.00 2.93
675 684 1.626654 CGAGTAGCACGCAGGTTTGG 61.627 60.000 0.00 0.00 0.00 3.28
676 685 0.320421 GAGTAGCACGCAGGTTTGGA 60.320 55.000 0.00 0.00 0.00 3.53
677 686 0.320771 AGTAGCACGCAGGTTTGGAG 60.321 55.000 0.00 0.00 0.00 3.86
678 687 1.003839 TAGCACGCAGGTTTGGAGG 60.004 57.895 0.00 0.00 0.00 4.30
679 688 4.043200 GCACGCAGGTTTGGAGGC 62.043 66.667 0.00 0.00 0.00 4.70
680 689 2.281761 CACGCAGGTTTGGAGGCT 60.282 61.111 0.00 0.00 0.00 4.58
681 690 1.898574 CACGCAGGTTTGGAGGCTT 60.899 57.895 0.00 0.00 0.00 4.35
682 691 1.152756 ACGCAGGTTTGGAGGCTTT 60.153 52.632 0.00 0.00 0.00 3.51
683 692 1.286880 CGCAGGTTTGGAGGCTTTG 59.713 57.895 0.00 0.00 0.00 2.77
684 693 1.667722 GCAGGTTTGGAGGCTTTGG 59.332 57.895 0.00 0.00 0.00 3.28
685 694 1.115326 GCAGGTTTGGAGGCTTTGGT 61.115 55.000 0.00 0.00 0.00 3.67
686 695 1.413118 CAGGTTTGGAGGCTTTGGTT 58.587 50.000 0.00 0.00 0.00 3.67
687 696 2.593026 CAGGTTTGGAGGCTTTGGTTA 58.407 47.619 0.00 0.00 0.00 2.85
688 697 2.296190 CAGGTTTGGAGGCTTTGGTTAC 59.704 50.000 0.00 0.00 0.00 2.50
689 698 2.177016 AGGTTTGGAGGCTTTGGTTACT 59.823 45.455 0.00 0.00 0.00 2.24
690 699 2.963101 GGTTTGGAGGCTTTGGTTACTT 59.037 45.455 0.00 0.00 0.00 2.24
691 700 3.243737 GGTTTGGAGGCTTTGGTTACTTG 60.244 47.826 0.00 0.00 0.00 3.16
745 754 0.673437 CATCACGGTTGGCCACTTTT 59.327 50.000 3.88 0.00 34.09 2.27
792 805 9.989869 AAGACGACATCAATGTATCTATATACG 57.010 33.333 8.89 0.00 41.95 3.06
811 825 8.691661 ATATACGTTTGGCCATTAGAAGATTT 57.308 30.769 6.09 0.00 0.00 2.17
837 878 5.221601 ACAAAGACAGAGAAGAGAATGAGCA 60.222 40.000 0.00 0.00 0.00 4.26
839 880 5.013568 AGACAGAGAAGAGAATGAGCATG 57.986 43.478 0.00 0.00 0.00 4.06
851 892 2.951457 TGAGCATGCATTCCACAATG 57.049 45.000 21.98 0.00 42.26 2.82
860 901 2.095263 GCATTCCACAATGTAGTGCGTT 60.095 45.455 0.00 0.00 41.51 4.84
896 946 6.557291 TTGACCGTAAATTTAACCAACGAT 57.443 33.333 11.09 0.00 35.66 3.73
899 949 6.091986 TGACCGTAAATTTAACCAACGATACC 59.908 38.462 11.09 0.52 35.66 2.73
921 971 7.687941 ACCGAGTATGTTGAATTCTGAAATT 57.312 32.000 7.05 0.00 37.80 1.82
945 995 0.178950 TCCAGCACCTCTGTCAGTCT 60.179 55.000 0.00 0.00 41.25 3.24
1020 1152 5.886960 AGCTATTTAAGTGCTTGAGTTGG 57.113 39.130 0.00 0.00 32.61 3.77
1062 1194 3.825908 ATTTTGCCTCCCCAAGTAGAA 57.174 42.857 0.00 0.00 0.00 2.10
1063 1195 3.603965 TTTTGCCTCCCCAAGTAGAAA 57.396 42.857 0.00 0.00 0.00 2.52
1064 1196 2.579410 TTGCCTCCCCAAGTAGAAAC 57.421 50.000 0.00 0.00 0.00 2.78
1065 1197 1.440618 TGCCTCCCCAAGTAGAAACA 58.559 50.000 0.00 0.00 0.00 2.83
1066 1198 1.351017 TGCCTCCCCAAGTAGAAACAG 59.649 52.381 0.00 0.00 0.00 3.16
1095 1227 4.631377 CGAAGCAAACTAACATCCATCTCA 59.369 41.667 0.00 0.00 0.00 3.27
1114 1246 1.135139 CATGAGACGAACGAGGATGGT 59.865 52.381 0.14 0.00 0.00 3.55
1160 1292 0.473326 GGCTGATGCTGATCCTCCTT 59.527 55.000 0.00 0.00 39.59 3.36
1172 1304 2.452600 TCCTCCTTGTTTTGCTGGTT 57.547 45.000 0.00 0.00 0.00 3.67
1176 1308 3.457234 CTCCTTGTTTTGCTGGTTTTCC 58.543 45.455 0.00 0.00 41.14 3.13
1213 1345 3.542676 TGGACCGTCCACTTGCGT 61.543 61.111 16.73 0.00 42.67 5.24
1217 1349 1.828331 GACCGTCCACTTGCGTCAAC 61.828 60.000 0.00 0.00 0.00 3.18
1220 1352 0.315869 CGTCCACTTGCGTCAACAAC 60.316 55.000 0.00 0.00 0.00 3.32
1221 1353 0.028902 GTCCACTTGCGTCAACAACC 59.971 55.000 0.00 0.00 0.00 3.77
1222 1354 1.010125 CCACTTGCGTCAACAACCG 60.010 57.895 0.00 0.00 0.00 4.44
1223 1355 1.711060 CCACTTGCGTCAACAACCGT 61.711 55.000 0.00 0.00 0.00 4.83
1224 1356 0.931702 CACTTGCGTCAACAACCGTA 59.068 50.000 0.00 0.00 0.00 4.02
1225 1357 1.328069 CACTTGCGTCAACAACCGTAA 59.672 47.619 0.00 0.00 0.00 3.18
1226 1358 2.294479 CTTGCGTCAACAACCGTAAG 57.706 50.000 0.00 0.00 39.65 2.34
1227 1359 0.305313 TTGCGTCAACAACCGTAAGC 59.695 50.000 0.00 0.00 0.00 3.09
1278 1410 8.908903 TGAACCAAACAAGTTAAATCATGTACT 58.091 29.630 0.00 0.00 0.00 2.73
1300 1432 5.239525 ACTGTTTTCTTGCTAGCTAACTTGG 59.760 40.000 17.23 0.00 0.00 3.61
1305 1437 7.811117 TTTCTTGCTAGCTAACTTGGTTTTA 57.189 32.000 17.23 0.00 0.00 1.52
1344 1476 2.811317 GTTCAGCGAGACTGCCCG 60.811 66.667 0.00 0.00 46.76 6.13
1388 1524 1.405105 ACGAGCATGCTGTTTTTGTGT 59.595 42.857 28.27 7.23 0.00 3.72
1417 1553 6.018751 CCAGATATTATGTTCTTGTGGTGTCG 60.019 42.308 0.00 0.00 0.00 4.35
1436 1572 5.049680 GTGTCGATCACCTTGTGTATGTTTT 60.050 40.000 6.82 0.00 40.84 2.43
1437 1573 5.529430 TGTCGATCACCTTGTGTATGTTTTT 59.471 36.000 0.00 0.00 34.79 1.94
1450 1586 8.518151 TGTGTATGTTTTTGTATTGCTTGATG 57.482 30.769 0.00 0.00 0.00 3.07
1461 1597 8.518151 TTGTATTGCTTGATGTTTGTATTGTG 57.482 30.769 0.00 0.00 0.00 3.33
1464 1600 5.119931 TGCTTGATGTTTGTATTGTGACC 57.880 39.130 0.00 0.00 0.00 4.02
1557 1694 6.763135 AGCTTTTCTTTGAAATTTGAGGAACC 59.237 34.615 0.00 0.00 0.00 3.62
1561 1698 6.894339 TCTTTGAAATTTGAGGAACCCTAC 57.106 37.500 0.00 0.00 31.76 3.18
1562 1699 6.610830 TCTTTGAAATTTGAGGAACCCTACT 58.389 36.000 0.00 0.00 31.76 2.57
1563 1700 6.715264 TCTTTGAAATTTGAGGAACCCTACTC 59.285 38.462 0.00 0.00 31.76 2.59
1567 1710 5.340439 AATTTGAGGAACCCTACTCTACG 57.660 43.478 0.00 0.00 31.76 3.51
1575 1718 7.230108 TGAGGAACCCTACTCTACGTTTATATG 59.770 40.741 0.00 0.00 31.76 1.78
1597 1740 4.009675 GCTGAAGATGGTTGGTGTTATCA 58.990 43.478 0.00 0.00 0.00 2.15
1615 1758 8.448615 GTGTTATCACCTCATACCTAAAACAAC 58.551 37.037 0.00 0.00 38.51 3.32
1630 1773 7.911727 ACCTAAAACAACGAAATCAGTGTTAAC 59.088 33.333 0.00 0.00 0.00 2.01
1636 1779 7.404203 ACAACGAAATCAGTGTTAACAACTAC 58.596 34.615 10.51 0.00 0.00 2.73
1637 1780 7.279313 ACAACGAAATCAGTGTTAACAACTACT 59.721 33.333 10.51 0.00 0.00 2.57
1638 1781 8.757789 CAACGAAATCAGTGTTAACAACTACTA 58.242 33.333 10.51 0.88 0.00 1.82
1639 1782 8.876275 ACGAAATCAGTGTTAACAACTACTAA 57.124 30.769 10.51 0.00 0.00 2.24
1640 1783 9.316730 ACGAAATCAGTGTTAACAACTACTAAA 57.683 29.630 10.51 0.00 0.00 1.85
1641 1784 9.577003 CGAAATCAGTGTTAACAACTACTAAAC 57.423 33.333 10.51 0.00 0.00 2.01
1642 1785 9.577003 GAAATCAGTGTTAACAACTACTAAACG 57.423 33.333 10.51 0.00 0.00 3.60
1643 1786 8.652810 AATCAGTGTTAACAACTACTAAACGT 57.347 30.769 10.51 0.00 0.00 3.99
1675 1818 6.429078 CACCTGCATATATGTAGTGAGCAAAT 59.571 38.462 23.93 0.99 38.62 2.32
1684 1827 1.251251 AGTGAGCAAATGAGCAACCC 58.749 50.000 0.00 0.00 36.85 4.11
1693 1836 0.975887 ATGAGCAACCCGCCAAAAAT 59.024 45.000 0.00 0.00 44.04 1.82
1723 1866 2.277969 CAGTGCTAGCTGTTCATCTGG 58.722 52.381 17.23 0.00 0.00 3.86
1724 1867 1.905215 AGTGCTAGCTGTTCATCTGGT 59.095 47.619 17.23 0.00 0.00 4.00
1726 1869 2.417933 GTGCTAGCTGTTCATCTGGTTG 59.582 50.000 17.23 0.00 0.00 3.77
1738 1881 0.679505 TCTGGTTGAGAAGGTCGGTG 59.320 55.000 0.00 0.00 0.00 4.94
1744 1891 3.683340 GGTTGAGAAGGTCGGTGATTAAC 59.317 47.826 0.00 0.00 0.00 2.01
1772 1919 5.011635 GTGTTAAAAATGTCCCCACTCCAAT 59.988 40.000 0.00 0.00 0.00 3.16
1777 1924 4.946160 AATGTCCCCACTCCAATAAGAA 57.054 40.909 0.00 0.00 0.00 2.52
1780 1927 5.630415 TGTCCCCACTCCAATAAGAATAG 57.370 43.478 0.00 0.00 0.00 1.73
1781 1928 4.141482 TGTCCCCACTCCAATAAGAATAGC 60.141 45.833 0.00 0.00 0.00 2.97
1782 1929 4.044308 TCCCCACTCCAATAAGAATAGCA 58.956 43.478 0.00 0.00 0.00 3.49
1783 1930 4.665009 TCCCCACTCCAATAAGAATAGCAT 59.335 41.667 0.00 0.00 0.00 3.79
1784 1931 5.849475 TCCCCACTCCAATAAGAATAGCATA 59.151 40.000 0.00 0.00 0.00 3.14
1785 1932 6.331572 TCCCCACTCCAATAAGAATAGCATAA 59.668 38.462 0.00 0.00 0.00 1.90
1786 1933 7.004086 CCCCACTCCAATAAGAATAGCATAAA 58.996 38.462 0.00 0.00 0.00 1.40
1787 1934 7.040409 CCCCACTCCAATAAGAATAGCATAAAC 60.040 40.741 0.00 0.00 0.00 2.01
1788 1935 7.502226 CCCACTCCAATAAGAATAGCATAAACA 59.498 37.037 0.00 0.00 0.00 2.83
1789 1936 8.345565 CCACTCCAATAAGAATAGCATAAACAC 58.654 37.037 0.00 0.00 0.00 3.32
1790 1937 9.113838 CACTCCAATAAGAATAGCATAAACACT 57.886 33.333 0.00 0.00 0.00 3.55
1791 1938 9.113838 ACTCCAATAAGAATAGCATAAACACTG 57.886 33.333 0.00 0.00 0.00 3.66
1792 1939 8.450578 TCCAATAAGAATAGCATAAACACTGG 57.549 34.615 0.00 0.00 0.00 4.00
1793 1940 7.502226 TCCAATAAGAATAGCATAAACACTGGG 59.498 37.037 0.00 0.00 0.00 4.45
1794 1941 7.502226 CCAATAAGAATAGCATAAACACTGGGA 59.498 37.037 0.00 0.00 0.00 4.37
1795 1942 9.071276 CAATAAGAATAGCATAAACACTGGGAT 57.929 33.333 0.00 0.00 0.00 3.85
1796 1943 6.949352 AAGAATAGCATAAACACTGGGATG 57.051 37.500 0.00 0.00 0.00 3.51
1797 1944 5.380043 AGAATAGCATAAACACTGGGATGG 58.620 41.667 0.00 0.00 0.00 3.51
1798 1945 1.767759 AGCATAAACACTGGGATGGC 58.232 50.000 0.00 0.00 0.00 4.40
1799 1946 1.005805 AGCATAAACACTGGGATGGCA 59.994 47.619 0.00 0.00 0.00 4.92
1800 1947 1.406539 GCATAAACACTGGGATGGCAG 59.593 52.381 0.00 0.00 0.00 4.85
1801 1948 2.945440 GCATAAACACTGGGATGGCAGA 60.945 50.000 0.00 0.00 0.00 4.26
1802 1949 2.489938 TAAACACTGGGATGGCAGAC 57.510 50.000 0.00 0.00 0.00 3.51
1803 1950 0.478072 AAACACTGGGATGGCAGACA 59.522 50.000 0.00 0.00 0.00 3.41
1804 1951 0.700564 AACACTGGGATGGCAGACAT 59.299 50.000 0.00 0.00 44.18 3.06
1805 1952 0.700564 ACACTGGGATGGCAGACATT 59.299 50.000 0.00 0.00 40.72 2.71
1806 1953 1.915489 ACACTGGGATGGCAGACATTA 59.085 47.619 0.00 0.00 40.72 1.90
1807 1954 2.292267 CACTGGGATGGCAGACATTAC 58.708 52.381 0.00 0.00 40.72 1.89
1808 1955 1.915489 ACTGGGATGGCAGACATTACA 59.085 47.619 0.00 0.00 40.72 2.41
1809 1956 2.511218 ACTGGGATGGCAGACATTACAT 59.489 45.455 0.00 0.00 40.72 2.29
1810 1957 3.053395 ACTGGGATGGCAGACATTACATT 60.053 43.478 0.00 0.00 40.72 2.71
1811 1958 3.554934 TGGGATGGCAGACATTACATTC 58.445 45.455 0.00 0.00 40.72 2.67
1812 1959 3.202818 TGGGATGGCAGACATTACATTCT 59.797 43.478 0.00 0.00 40.72 2.40
1813 1960 4.210331 GGGATGGCAGACATTACATTCTT 58.790 43.478 0.00 0.00 40.72 2.52
1814 1961 5.104151 TGGGATGGCAGACATTACATTCTTA 60.104 40.000 0.00 0.00 40.72 2.10
1815 1962 5.471456 GGGATGGCAGACATTACATTCTTAG 59.529 44.000 0.00 0.00 40.72 2.18
1816 1963 6.058183 GGATGGCAGACATTACATTCTTAGT 58.942 40.000 0.00 0.00 40.72 2.24
1817 1964 7.217200 GGATGGCAGACATTACATTCTTAGTA 58.783 38.462 0.00 0.00 40.72 1.82
1818 1965 7.880195 GGATGGCAGACATTACATTCTTAGTAT 59.120 37.037 0.00 0.00 40.72 2.12
1819 1966 9.277783 GATGGCAGACATTACATTCTTAGTATT 57.722 33.333 0.00 0.00 40.72 1.89
1820 1967 9.632638 ATGGCAGACATTACATTCTTAGTATTT 57.367 29.630 0.00 0.00 35.97 1.40
1821 1968 9.461312 TGGCAGACATTACATTCTTAGTATTTT 57.539 29.630 0.00 0.00 0.00 1.82
1830 1977 7.716799 ACATTCTTAGTATTTTTCCATGGCA 57.283 32.000 6.96 0.00 0.00 4.92
1831 1978 8.310122 ACATTCTTAGTATTTTTCCATGGCAT 57.690 30.769 6.96 0.00 0.00 4.40
1832 1979 8.416329 ACATTCTTAGTATTTTTCCATGGCATC 58.584 33.333 6.96 0.00 0.00 3.91
1833 1980 8.636213 CATTCTTAGTATTTTTCCATGGCATCT 58.364 33.333 6.96 1.17 0.00 2.90
1834 1981 9.866655 ATTCTTAGTATTTTTCCATGGCATCTA 57.133 29.630 6.96 0.24 0.00 1.98
1835 1982 9.866655 TTCTTAGTATTTTTCCATGGCATCTAT 57.133 29.630 6.96 0.00 0.00 1.98
1836 1983 9.866655 TCTTAGTATTTTTCCATGGCATCTATT 57.133 29.630 6.96 0.00 0.00 1.73
1841 1988 9.476202 GTATTTTTCCATGGCATCTATTTTACC 57.524 33.333 6.96 0.00 0.00 2.85
1842 1989 7.487822 TTTTTCCATGGCATCTATTTTACCA 57.512 32.000 6.96 0.00 34.28 3.25
1843 1990 7.487822 TTTTCCATGGCATCTATTTTACCAA 57.512 32.000 6.96 0.00 33.30 3.67
1844 1991 6.713762 TTCCATGGCATCTATTTTACCAAG 57.286 37.500 6.96 0.00 33.30 3.61
1845 1992 6.012337 TCCATGGCATCTATTTTACCAAGA 57.988 37.500 6.96 0.00 33.30 3.02
1846 1993 6.064060 TCCATGGCATCTATTTTACCAAGAG 58.936 40.000 6.96 0.00 33.30 2.85
1847 1994 6.064060 CCATGGCATCTATTTTACCAAGAGA 58.936 40.000 0.00 0.00 33.30 3.10
1848 1995 6.547141 CCATGGCATCTATTTTACCAAGAGAA 59.453 38.462 0.00 0.00 33.30 2.87
1849 1996 7.232127 CCATGGCATCTATTTTACCAAGAGAAT 59.768 37.037 0.00 0.00 33.30 2.40
1850 1997 9.288576 CATGGCATCTATTTTACCAAGAGAATA 57.711 33.333 0.00 0.00 33.30 1.75
1851 1998 8.677148 TGGCATCTATTTTACCAAGAGAATAC 57.323 34.615 0.00 0.00 0.00 1.89
1852 1999 8.271458 TGGCATCTATTTTACCAAGAGAATACA 58.729 33.333 0.00 0.00 0.00 2.29
1853 2000 9.120538 GGCATCTATTTTACCAAGAGAATACAA 57.879 33.333 0.00 0.00 0.00 2.41
1864 2011 8.697507 ACCAAGAGAATACAAACAATTCTTCT 57.302 30.769 0.29 0.00 42.38 2.85
1865 2012 9.136323 ACCAAGAGAATACAAACAATTCTTCTT 57.864 29.630 0.29 3.44 42.38 2.52
1866 2013 9.403110 CCAAGAGAATACAAACAATTCTTCTTG 57.597 33.333 18.57 18.57 42.38 3.02
1867 2014 9.956720 CAAGAGAATACAAACAATTCTTCTTGT 57.043 29.630 17.97 0.00 42.38 3.16
1875 2022 8.506168 ACAAACAATTCTTCTTGTAAGACTGA 57.494 30.769 0.00 0.00 38.38 3.41
1876 2023 8.398665 ACAAACAATTCTTCTTGTAAGACTGAC 58.601 33.333 0.00 0.00 38.38 3.51
1877 2024 8.616076 CAAACAATTCTTCTTGTAAGACTGACT 58.384 33.333 0.00 0.00 38.38 3.41
1878 2025 7.721286 ACAATTCTTCTTGTAAGACTGACTG 57.279 36.000 0.00 0.69 37.58 3.51
1879 2026 7.500992 ACAATTCTTCTTGTAAGACTGACTGA 58.499 34.615 0.00 0.00 37.58 3.41
1880 2027 8.153550 ACAATTCTTCTTGTAAGACTGACTGAT 58.846 33.333 0.00 0.00 37.58 2.90
1881 2028 8.655092 CAATTCTTCTTGTAAGACTGACTGATC 58.345 37.037 0.00 0.00 34.13 2.92
1882 2029 6.274157 TCTTCTTGTAAGACTGACTGATCC 57.726 41.667 0.00 0.00 34.13 3.36
1883 2030 6.013379 TCTTCTTGTAAGACTGACTGATCCT 58.987 40.000 0.00 0.00 34.13 3.24
1884 2031 7.175797 TCTTCTTGTAAGACTGACTGATCCTA 58.824 38.462 0.00 0.00 34.13 2.94
1885 2032 7.836685 TCTTCTTGTAAGACTGACTGATCCTAT 59.163 37.037 0.00 0.00 34.13 2.57
1886 2033 9.126151 CTTCTTGTAAGACTGACTGATCCTATA 57.874 37.037 0.00 0.00 34.13 1.31
1887 2034 9.647918 TTCTTGTAAGACTGACTGATCCTATAT 57.352 33.333 0.00 0.00 34.13 0.86
1890 2037 8.865420 TGTAAGACTGACTGATCCTATATACC 57.135 38.462 0.00 0.00 0.00 2.73
1891 2038 8.670490 TGTAAGACTGACTGATCCTATATACCT 58.330 37.037 0.00 0.00 0.00 3.08
1959 2106 5.893687 CAATTATGCTAACTCAACATGCCA 58.106 37.500 0.00 0.00 0.00 4.92
1960 2107 4.963276 TTATGCTAACTCAACATGCCAC 57.037 40.909 0.00 0.00 0.00 5.01
1961 2108 2.268762 TGCTAACTCAACATGCCACA 57.731 45.000 0.00 0.00 0.00 4.17
1962 2109 2.580962 TGCTAACTCAACATGCCACAA 58.419 42.857 0.00 0.00 0.00 3.33
1963 2110 3.156293 TGCTAACTCAACATGCCACAAT 58.844 40.909 0.00 0.00 0.00 2.71
1964 2111 3.057386 TGCTAACTCAACATGCCACAATG 60.057 43.478 0.00 0.00 0.00 2.82
1965 2112 3.674138 GCTAACTCAACATGCCACAATGG 60.674 47.826 0.00 0.00 41.55 3.16
1966 2113 2.291209 ACTCAACATGCCACAATGGA 57.709 45.000 0.00 0.00 40.96 3.41
1967 2114 2.811410 ACTCAACATGCCACAATGGAT 58.189 42.857 0.00 0.00 40.96 3.41
1968 2115 2.494471 ACTCAACATGCCACAATGGATG 59.506 45.455 0.00 2.88 40.96 3.51
1969 2116 2.756207 CTCAACATGCCACAATGGATGA 59.244 45.455 0.00 0.00 40.96 2.92
1970 2117 2.756207 TCAACATGCCACAATGGATGAG 59.244 45.455 0.00 0.44 40.96 2.90
1971 2118 2.756207 CAACATGCCACAATGGATGAGA 59.244 45.455 0.00 0.00 40.96 3.27
1972 2119 3.090210 ACATGCCACAATGGATGAGAA 57.910 42.857 0.00 0.00 40.96 2.87
1973 2120 3.433343 ACATGCCACAATGGATGAGAAA 58.567 40.909 0.00 0.00 40.96 2.52
1974 2121 3.833650 ACATGCCACAATGGATGAGAAAA 59.166 39.130 0.00 0.00 40.96 2.29
1975 2122 4.081862 ACATGCCACAATGGATGAGAAAAG 60.082 41.667 0.00 0.00 40.96 2.27
1976 2123 3.765381 TGCCACAATGGATGAGAAAAGA 58.235 40.909 0.00 0.00 40.96 2.52
1977 2124 3.507233 TGCCACAATGGATGAGAAAAGAC 59.493 43.478 0.00 0.00 40.96 3.01
1978 2125 3.426695 GCCACAATGGATGAGAAAAGACG 60.427 47.826 0.00 0.00 40.96 4.18
1979 2126 3.426695 CCACAATGGATGAGAAAAGACGC 60.427 47.826 0.00 0.00 40.96 5.19
1980 2127 2.416547 ACAATGGATGAGAAAAGACGCG 59.583 45.455 3.53 3.53 0.00 6.01
1981 2128 1.009829 ATGGATGAGAAAAGACGCGC 58.990 50.000 5.73 0.00 0.00 6.86
1982 2129 1.019278 TGGATGAGAAAAGACGCGCC 61.019 55.000 5.73 0.00 0.00 6.53
1983 2130 0.741221 GGATGAGAAAAGACGCGCCT 60.741 55.000 5.73 0.00 0.00 5.52
1984 2131 1.079503 GATGAGAAAAGACGCGCCTT 58.920 50.000 5.73 2.85 0.00 4.35
1985 2132 2.268298 GATGAGAAAAGACGCGCCTTA 58.732 47.619 8.45 0.00 0.00 2.69
1986 2133 2.157834 TGAGAAAAGACGCGCCTTAA 57.842 45.000 8.45 0.00 0.00 1.85
1987 2134 1.796459 TGAGAAAAGACGCGCCTTAAC 59.204 47.619 8.45 5.77 0.00 2.01
1988 2135 1.796459 GAGAAAAGACGCGCCTTAACA 59.204 47.619 8.45 0.00 0.00 2.41
1989 2136 2.415512 GAGAAAAGACGCGCCTTAACAT 59.584 45.455 8.45 0.00 0.00 2.71
1990 2137 2.159627 AGAAAAGACGCGCCTTAACATG 59.840 45.455 8.45 0.00 0.00 3.21
1991 2138 0.168128 AAAGACGCGCCTTAACATGC 59.832 50.000 8.45 0.00 0.00 4.06
1992 2139 0.953471 AAGACGCGCCTTAACATGCA 60.953 50.000 5.66 0.00 0.00 3.96
1993 2140 0.953471 AGACGCGCCTTAACATGCAA 60.953 50.000 5.73 0.00 0.00 4.08
1994 2141 0.793104 GACGCGCCTTAACATGCAAC 60.793 55.000 5.73 0.00 0.00 4.17
1995 2142 1.514014 CGCGCCTTAACATGCAACC 60.514 57.895 0.00 0.00 0.00 3.77
1996 2143 1.583986 GCGCCTTAACATGCAACCA 59.416 52.632 0.00 0.00 0.00 3.67
1997 2144 0.173255 GCGCCTTAACATGCAACCAT 59.827 50.000 0.00 0.00 0.00 3.55
2012 2159 4.255833 CAACCATGCCAACTTAACATGT 57.744 40.909 0.00 0.00 39.62 3.21
2013 2160 4.236935 CAACCATGCCAACTTAACATGTC 58.763 43.478 0.00 0.00 39.62 3.06
2014 2161 3.495331 ACCATGCCAACTTAACATGTCA 58.505 40.909 0.00 0.00 39.62 3.58
2015 2162 4.088634 ACCATGCCAACTTAACATGTCAT 58.911 39.130 0.00 0.00 39.62 3.06
2016 2163 4.158394 ACCATGCCAACTTAACATGTCATC 59.842 41.667 0.00 0.00 39.62 2.92
2017 2164 4.158209 CCATGCCAACTTAACATGTCATCA 59.842 41.667 0.00 0.00 39.62 3.07
2018 2165 5.163488 CCATGCCAACTTAACATGTCATCAT 60.163 40.000 0.00 0.00 39.62 2.45
2029 2176 4.600692 CATGTCATCATGCATGGGAAAT 57.399 40.909 25.97 19.73 43.66 2.17
2030 2177 4.306600 CATGTCATCATGCATGGGAAATG 58.693 43.478 25.97 25.38 43.66 2.32
2031 2178 3.633418 TGTCATCATGCATGGGAAATGA 58.367 40.909 25.97 22.26 34.96 2.57
2032 2179 3.382227 TGTCATCATGCATGGGAAATGAC 59.618 43.478 32.34 32.34 41.97 3.06
2033 2180 3.382227 GTCATCATGCATGGGAAATGACA 59.618 43.478 33.17 14.89 41.51 3.58
2034 2181 3.382227 TCATCATGCATGGGAAATGACAC 59.618 43.478 25.97 0.00 33.37 3.67
2035 2182 2.805194 TCATGCATGGGAAATGACACA 58.195 42.857 25.97 0.00 0.00 3.72
2036 2183 2.492881 TCATGCATGGGAAATGACACAC 59.507 45.455 25.97 0.00 0.00 3.82
2037 2184 0.880441 TGCATGGGAAATGACACACG 59.120 50.000 0.00 0.00 0.00 4.49
2038 2185 0.456653 GCATGGGAAATGACACACGC 60.457 55.000 0.00 0.00 0.00 5.34
2039 2186 1.167851 CATGGGAAATGACACACGCT 58.832 50.000 0.00 0.00 0.00 5.07
2040 2187 2.355197 CATGGGAAATGACACACGCTA 58.645 47.619 0.00 0.00 0.00 4.26
2041 2188 2.552599 TGGGAAATGACACACGCTAA 57.447 45.000 0.00 0.00 0.00 3.09
2042 2189 2.147958 TGGGAAATGACACACGCTAAC 58.852 47.619 0.00 0.00 0.00 2.34
2043 2190 2.147958 GGGAAATGACACACGCTAACA 58.852 47.619 0.00 0.00 0.00 2.41
2044 2191 2.747446 GGGAAATGACACACGCTAACAT 59.253 45.455 0.00 0.00 0.00 2.71
2045 2192 3.190535 GGGAAATGACACACGCTAACATT 59.809 43.478 0.00 0.00 33.50 2.71
2046 2193 4.403453 GGAAATGACACACGCTAACATTC 58.597 43.478 0.00 0.00 32.02 2.67
2047 2194 4.083537 GGAAATGACACACGCTAACATTCA 60.084 41.667 0.00 0.00 32.02 2.57
2048 2195 5.431420 AAATGACACACGCTAACATTCAA 57.569 34.783 0.00 0.00 32.02 2.69
2049 2196 3.870723 TGACACACGCTAACATTCAAC 57.129 42.857 0.00 0.00 0.00 3.18
2050 2197 3.462982 TGACACACGCTAACATTCAACT 58.537 40.909 0.00 0.00 0.00 3.16
2051 2198 4.623002 TGACACACGCTAACATTCAACTA 58.377 39.130 0.00 0.00 0.00 2.24
2052 2199 5.234752 TGACACACGCTAACATTCAACTAT 58.765 37.500 0.00 0.00 0.00 2.12
2053 2200 5.120053 TGACACACGCTAACATTCAACTATG 59.880 40.000 0.00 0.00 0.00 2.23
2054 2201 4.142902 ACACACGCTAACATTCAACTATGC 60.143 41.667 0.00 0.00 0.00 3.14
2055 2202 3.374058 ACACGCTAACATTCAACTATGCC 59.626 43.478 0.00 0.00 0.00 4.40
2056 2203 3.373748 CACGCTAACATTCAACTATGCCA 59.626 43.478 0.00 0.00 0.00 4.92
2057 2204 4.006989 ACGCTAACATTCAACTATGCCAA 58.993 39.130 0.00 0.00 0.00 4.52
2058 2205 4.142687 ACGCTAACATTCAACTATGCCAAC 60.143 41.667 0.00 0.00 0.00 3.77
2059 2206 4.142708 CGCTAACATTCAACTATGCCAACA 60.143 41.667 0.00 0.00 0.00 3.33
2060 2207 5.449041 CGCTAACATTCAACTATGCCAACAT 60.449 40.000 0.00 0.00 40.49 2.71
2061 2208 5.745294 GCTAACATTCAACTATGCCAACATG 59.255 40.000 0.00 0.00 37.04 3.21
2062 2209 5.726980 AACATTCAACTATGCCAACATGT 57.273 34.783 0.00 0.00 37.04 3.21
2063 2210 5.314923 ACATTCAACTATGCCAACATGTC 57.685 39.130 0.00 0.00 37.04 3.06
2064 2211 4.158394 ACATTCAACTATGCCAACATGTCC 59.842 41.667 0.00 0.00 37.04 4.02
2065 2212 2.722094 TCAACTATGCCAACATGTCCC 58.278 47.619 0.00 0.00 37.04 4.46
2066 2213 1.750778 CAACTATGCCAACATGTCCCC 59.249 52.381 0.00 0.00 37.04 4.81
2067 2214 0.998928 ACTATGCCAACATGTCCCCA 59.001 50.000 0.00 0.00 37.04 4.96
2068 2215 1.340991 ACTATGCCAACATGTCCCCAC 60.341 52.381 0.00 0.00 37.04 4.61
2069 2216 0.998928 TATGCCAACATGTCCCCACT 59.001 50.000 0.00 0.00 37.04 4.00
2070 2217 0.323725 ATGCCAACATGTCCCCACTC 60.324 55.000 0.00 0.00 34.35 3.51
2071 2218 1.678970 GCCAACATGTCCCCACTCC 60.679 63.158 0.00 0.00 0.00 3.85
2072 2219 1.767036 CCAACATGTCCCCACTCCA 59.233 57.895 0.00 0.00 0.00 3.86
2073 2220 0.112218 CCAACATGTCCCCACTCCAA 59.888 55.000 0.00 0.00 0.00 3.53
2074 2221 1.480312 CCAACATGTCCCCACTCCAAA 60.480 52.381 0.00 0.00 0.00 3.28
2075 2222 2.315176 CAACATGTCCCCACTCCAAAA 58.685 47.619 0.00 0.00 0.00 2.44
2076 2223 2.697751 CAACATGTCCCCACTCCAAAAA 59.302 45.455 0.00 0.00 0.00 1.94
2106 2253 5.371526 CATAAACACTAGGATGGCAGACAT 58.628 41.667 0.00 0.00 44.18 3.06
2179 2326 6.203530 CAGACAATTCTGCTTGTAAGACTGAA 59.796 38.462 0.00 4.01 42.99 3.02
2243 2391 9.440773 TCTCTAATTCGCTCAATATGCAATTAT 57.559 29.630 0.00 0.00 30.87 1.28
2274 2422 2.756760 ACATGCCACAATGGATGAGAAC 59.243 45.455 0.00 0.00 40.96 3.01
2279 2427 2.674852 CCACAATGGATGAGAACAGACG 59.325 50.000 0.00 0.00 40.96 4.18
2281 2429 1.325640 CAATGGATGAGAACAGACGCG 59.674 52.381 3.53 3.53 0.00 6.01
2297 2568 0.794229 CGCGCCTTAACATGCAACTG 60.794 55.000 0.00 0.00 0.00 3.16
2298 2569 0.240945 GCGCCTTAACATGCAACTGT 59.759 50.000 0.00 0.00 0.00 3.55
2340 2611 1.823250 GCATGGGAAAAGACACACCCT 60.823 52.381 0.00 0.00 42.49 4.34
2342 2613 3.761897 CATGGGAAAAGACACACCCTAA 58.238 45.455 0.00 0.00 42.49 2.69
2368 2639 4.297299 CAACTATGCCAACATGTGATCC 57.703 45.455 0.00 0.00 37.04 3.36
2369 2640 2.936202 ACTATGCCAACATGTGATCCC 58.064 47.619 0.00 0.00 37.04 3.85
2370 2641 2.241941 ACTATGCCAACATGTGATCCCA 59.758 45.455 0.00 0.00 37.04 4.37
2371 2642 2.464796 ATGCCAACATGTGATCCCAT 57.535 45.000 0.00 0.00 34.35 4.00
2372 2643 2.234896 TGCCAACATGTGATCCCATT 57.765 45.000 0.00 0.00 0.00 3.16
2373 2644 2.538222 TGCCAACATGTGATCCCATTT 58.462 42.857 0.00 0.00 0.00 2.32
2374 2645 3.706183 TGCCAACATGTGATCCCATTTA 58.294 40.909 0.00 0.00 0.00 1.40
2375 2646 3.446873 TGCCAACATGTGATCCCATTTAC 59.553 43.478 0.00 0.00 0.00 2.01
2376 2647 3.181476 GCCAACATGTGATCCCATTTACC 60.181 47.826 0.00 0.00 0.00 2.85
2377 2648 4.280819 CCAACATGTGATCCCATTTACCT 58.719 43.478 0.00 0.00 0.00 3.08
2378 2649 4.711355 CCAACATGTGATCCCATTTACCTT 59.289 41.667 0.00 0.00 0.00 3.50
2379 2650 5.187576 CCAACATGTGATCCCATTTACCTTT 59.812 40.000 0.00 0.00 0.00 3.11
2380 2651 5.920193 ACATGTGATCCCATTTACCTTTG 57.080 39.130 0.00 0.00 0.00 2.77
2381 2652 4.711355 ACATGTGATCCCATTTACCTTTGG 59.289 41.667 0.00 0.00 0.00 3.28
2382 2653 4.666412 TGTGATCCCATTTACCTTTGGA 57.334 40.909 0.00 0.00 34.81 3.53
2383 2654 5.004361 TGTGATCCCATTTACCTTTGGAA 57.996 39.130 0.00 0.00 34.81 3.53
2384 2655 5.398236 TGTGATCCCATTTACCTTTGGAAA 58.602 37.500 0.00 0.00 34.81 3.13
2385 2656 5.841237 TGTGATCCCATTTACCTTTGGAAAA 59.159 36.000 0.00 0.00 34.81 2.29
2386 2657 6.327626 TGTGATCCCATTTACCTTTGGAAAAA 59.672 34.615 0.00 0.00 34.81 1.94
2387 2658 6.873605 GTGATCCCATTTACCTTTGGAAAAAG 59.126 38.462 0.00 0.00 34.81 2.27
2388 2659 6.556874 TGATCCCATTTACCTTTGGAAAAAGT 59.443 34.615 0.00 0.00 34.81 2.66
2389 2660 6.816616 TCCCATTTACCTTTGGAAAAAGTT 57.183 33.333 0.00 0.00 34.81 2.66
2390 2661 6.822442 TCCCATTTACCTTTGGAAAAAGTTC 58.178 36.000 0.00 0.00 34.81 3.01
2391 2662 6.384305 TCCCATTTACCTTTGGAAAAAGTTCA 59.616 34.615 0.00 0.00 35.25 3.18
2392 2663 7.051000 CCCATTTACCTTTGGAAAAAGTTCAA 58.949 34.615 0.00 0.00 35.25 2.69
2393 2664 7.554476 CCCATTTACCTTTGGAAAAAGTTCAAA 59.446 33.333 0.00 0.00 35.25 2.69
2394 2665 8.951243 CCATTTACCTTTGGAAAAAGTTCAAAA 58.049 29.630 0.00 0.00 34.81 2.44
2400 2671 8.952278 ACCTTTGGAAAAAGTTCAAAATAAACC 58.048 29.630 0.00 0.00 36.33 3.27
2401 2672 9.173021 CCTTTGGAAAAAGTTCAAAATAAACCT 57.827 29.630 0.00 0.00 36.33 3.50
2421 2692 8.672823 AAACCTTAAAGTTGTAGACGAAATCT 57.327 30.769 0.00 0.00 41.95 2.40
2422 2693 9.768662 AAACCTTAAAGTTGTAGACGAAATCTA 57.231 29.630 0.00 0.00 39.04 1.98
2423 2694 9.768662 AACCTTAAAGTTGTAGACGAAATCTAA 57.231 29.630 0.00 0.00 41.75 2.10
2424 2695 9.768662 ACCTTAAAGTTGTAGACGAAATCTAAA 57.231 29.630 0.00 0.00 41.75 1.85
2431 2702 8.443937 AGTTGTAGACGAAATCTAAATCAAAGC 58.556 33.333 0.00 0.00 41.75 3.51
2432 2703 7.303634 TGTAGACGAAATCTAAATCAAAGCC 57.696 36.000 0.00 0.00 41.75 4.35
2433 2704 7.103641 TGTAGACGAAATCTAAATCAAAGCCT 58.896 34.615 0.00 0.00 41.75 4.58
2434 2705 6.428385 AGACGAAATCTAAATCAAAGCCTG 57.572 37.500 0.00 0.00 35.15 4.85
2435 2706 6.173339 AGACGAAATCTAAATCAAAGCCTGA 58.827 36.000 0.00 0.00 35.15 3.86
2436 2707 6.655003 AGACGAAATCTAAATCAAAGCCTGAA 59.345 34.615 0.00 0.00 34.72 3.02
2437 2708 6.612306 ACGAAATCTAAATCAAAGCCTGAAC 58.388 36.000 0.00 0.00 37.67 3.18
2438 2709 6.431234 ACGAAATCTAAATCAAAGCCTGAACT 59.569 34.615 0.00 0.00 37.67 3.01
2439 2710 7.040409 ACGAAATCTAAATCAAAGCCTGAACTT 60.040 33.333 0.00 0.00 37.67 2.66
2440 2711 7.809806 CGAAATCTAAATCAAAGCCTGAACTTT 59.190 33.333 0.00 0.00 40.49 2.66
2449 2720 4.861102 AAGCCTGAACTTTGAATCTTGG 57.139 40.909 0.00 0.00 0.00 3.61
2450 2721 4.104383 AGCCTGAACTTTGAATCTTGGA 57.896 40.909 0.00 0.00 0.00 3.53
2451 2722 4.473444 AGCCTGAACTTTGAATCTTGGAA 58.527 39.130 0.00 0.00 0.00 3.53
2452 2723 4.895297 AGCCTGAACTTTGAATCTTGGAAA 59.105 37.500 0.00 0.00 0.00 3.13
2453 2724 5.541484 AGCCTGAACTTTGAATCTTGGAAAT 59.459 36.000 0.00 0.00 0.00 2.17
2454 2725 5.866092 GCCTGAACTTTGAATCTTGGAAATC 59.134 40.000 0.00 0.00 0.00 2.17
2455 2726 6.088824 CCTGAACTTTGAATCTTGGAAATCG 58.911 40.000 0.00 0.00 0.00 3.34
2456 2727 6.012658 TGAACTTTGAATCTTGGAAATCGG 57.987 37.500 0.00 0.00 0.00 4.18
2457 2728 4.440839 ACTTTGAATCTTGGAAATCGGC 57.559 40.909 0.00 0.00 0.00 5.54
2458 2729 3.826157 ACTTTGAATCTTGGAAATCGGCA 59.174 39.130 0.00 0.00 0.00 5.69
2459 2730 3.848272 TTGAATCTTGGAAATCGGCAC 57.152 42.857 0.00 0.00 0.00 5.01
2460 2731 3.071874 TGAATCTTGGAAATCGGCACT 57.928 42.857 0.00 0.00 0.00 4.40
2461 2732 3.009723 TGAATCTTGGAAATCGGCACTC 58.990 45.455 0.00 0.00 0.00 3.51
2462 2733 3.274288 GAATCTTGGAAATCGGCACTCT 58.726 45.455 0.00 0.00 0.00 3.24
2463 2734 4.081142 TGAATCTTGGAAATCGGCACTCTA 60.081 41.667 0.00 0.00 0.00 2.43
2464 2735 3.973206 TCTTGGAAATCGGCACTCTAA 57.027 42.857 0.00 0.00 0.00 2.10
2465 2736 3.596214 TCTTGGAAATCGGCACTCTAAC 58.404 45.455 0.00 0.00 0.00 2.34
2466 2737 3.260884 TCTTGGAAATCGGCACTCTAACT 59.739 43.478 0.00 0.00 0.00 2.24
2467 2738 3.695830 TGGAAATCGGCACTCTAACTT 57.304 42.857 0.00 0.00 0.00 2.66
2468 2739 3.334691 TGGAAATCGGCACTCTAACTTG 58.665 45.455 0.00 0.00 0.00 3.16
2469 2740 3.244422 TGGAAATCGGCACTCTAACTTGT 60.244 43.478 0.00 0.00 0.00 3.16
2470 2741 4.020928 TGGAAATCGGCACTCTAACTTGTA 60.021 41.667 0.00 0.00 0.00 2.41
2471 2742 4.933400 GGAAATCGGCACTCTAACTTGTAA 59.067 41.667 0.00 0.00 0.00 2.41
2472 2743 5.585047 GGAAATCGGCACTCTAACTTGTAAT 59.415 40.000 0.00 0.00 0.00 1.89
2473 2744 6.238130 GGAAATCGGCACTCTAACTTGTAATC 60.238 42.308 0.00 0.00 0.00 1.75
2474 2745 4.119442 TCGGCACTCTAACTTGTAATCC 57.881 45.455 0.00 0.00 0.00 3.01
2475 2746 3.118884 TCGGCACTCTAACTTGTAATCCC 60.119 47.826 0.00 0.00 0.00 3.85
2476 2747 3.195661 GGCACTCTAACTTGTAATCCCG 58.804 50.000 0.00 0.00 0.00 5.14
2477 2748 3.369157 GGCACTCTAACTTGTAATCCCGT 60.369 47.826 0.00 0.00 0.00 5.28
2478 2749 4.251268 GCACTCTAACTTGTAATCCCGTT 58.749 43.478 0.00 0.00 0.00 4.44
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
57 58 2.747460 GCGACATGGCCTGCAGAA 60.747 61.111 17.39 0.00 0.00 3.02
77 78 0.521735 CACTTTTTGCCTCGCCCTAC 59.478 55.000 0.00 0.00 0.00 3.18
89 90 4.762251 GGCAGTCTCACCTAATCACTTTTT 59.238 41.667 0.00 0.00 0.00 1.94
103 104 0.678950 TTGTCACATCGGCAGTCTCA 59.321 50.000 0.00 0.00 0.00 3.27
106 107 1.021390 CCCTTGTCACATCGGCAGTC 61.021 60.000 0.00 0.00 0.00 3.51
120 121 4.010349 CCTTTAACTAGTTGCTCCCCTTG 58.990 47.826 18.56 0.00 0.00 3.61
158 159 5.799213 AGATAAGGTGAGTGTTCTGGAAAG 58.201 41.667 0.00 0.00 0.00 2.62
225 227 9.330063 TGATCGCTAAATAAAAAGAGATCATGT 57.670 29.630 12.69 0.00 46.96 3.21
232 234 9.994432 AACTTGATGATCGCTAAATAAAAAGAG 57.006 29.630 0.00 0.00 0.00 2.85
250 252 8.792633 TCCAGGTCAAACTTTTATAACTTGATG 58.207 33.333 0.00 0.00 0.00 3.07
405 407 3.064207 TCGTTACCATTGACTGCAAGAC 58.936 45.455 0.00 0.00 37.45 3.01
501 503 0.385390 CTGTCAAAGTTGGTGGCCAC 59.615 55.000 28.57 28.57 30.78 5.01
547 556 0.462581 AGCATCATGAACGCACGGAT 60.463 50.000 19.29 0.00 0.00 4.18
568 577 4.232221 CCTGCTGCAACAAACAATAAGAG 58.768 43.478 3.02 0.00 0.00 2.85
606 615 0.975556 TTGAGGCGGCTGAGATGGTA 60.976 55.000 19.63 0.00 0.00 3.25
643 652 3.186409 GTGCTACTCGTGCTGATTCAAAA 59.814 43.478 0.00 0.00 0.00 2.44
644 653 2.736721 GTGCTACTCGTGCTGATTCAAA 59.263 45.455 0.00 0.00 0.00 2.69
645 654 2.337583 GTGCTACTCGTGCTGATTCAA 58.662 47.619 0.00 0.00 0.00 2.69
646 655 1.732405 CGTGCTACTCGTGCTGATTCA 60.732 52.381 0.00 0.00 0.00 2.57
647 656 0.917259 CGTGCTACTCGTGCTGATTC 59.083 55.000 0.00 0.00 0.00 2.52
648 657 1.078759 GCGTGCTACTCGTGCTGATT 61.079 55.000 0.00 0.00 0.00 2.57
649 658 1.517257 GCGTGCTACTCGTGCTGAT 60.517 57.895 0.00 0.00 0.00 2.90
650 659 2.126463 GCGTGCTACTCGTGCTGA 60.126 61.111 0.00 0.00 0.00 4.26
651 660 2.430751 TGCGTGCTACTCGTGCTG 60.431 61.111 0.00 0.00 0.00 4.41
652 661 2.126307 CTGCGTGCTACTCGTGCT 60.126 61.111 0.00 0.00 0.00 4.40
653 662 3.181967 CCTGCGTGCTACTCGTGC 61.182 66.667 0.00 0.00 0.00 5.34
654 663 0.944311 AAACCTGCGTGCTACTCGTG 60.944 55.000 0.00 0.00 0.00 4.35
655 664 0.944311 CAAACCTGCGTGCTACTCGT 60.944 55.000 0.00 0.00 0.00 4.18
656 665 1.626654 CCAAACCTGCGTGCTACTCG 61.627 60.000 0.00 0.00 0.00 4.18
657 666 0.320421 TCCAAACCTGCGTGCTACTC 60.320 55.000 0.00 0.00 0.00 2.59
658 667 0.320771 CTCCAAACCTGCGTGCTACT 60.321 55.000 0.00 0.00 0.00 2.57
659 668 1.298859 CCTCCAAACCTGCGTGCTAC 61.299 60.000 0.00 0.00 0.00 3.58
660 669 1.003839 CCTCCAAACCTGCGTGCTA 60.004 57.895 0.00 0.00 0.00 3.49
661 670 2.281761 CCTCCAAACCTGCGTGCT 60.282 61.111 0.00 0.00 0.00 4.40
662 671 4.043200 GCCTCCAAACCTGCGTGC 62.043 66.667 0.00 0.00 0.00 5.34
663 672 1.455383 AAAGCCTCCAAACCTGCGTG 61.455 55.000 0.00 0.00 0.00 5.34
664 673 1.152756 AAAGCCTCCAAACCTGCGT 60.153 52.632 0.00 0.00 0.00 5.24
665 674 1.286880 CAAAGCCTCCAAACCTGCG 59.713 57.895 0.00 0.00 0.00 5.18
666 675 1.115326 ACCAAAGCCTCCAAACCTGC 61.115 55.000 0.00 0.00 0.00 4.85
667 676 1.413118 AACCAAAGCCTCCAAACCTG 58.587 50.000 0.00 0.00 0.00 4.00
668 677 2.177016 AGTAACCAAAGCCTCCAAACCT 59.823 45.455 0.00 0.00 0.00 3.50
669 678 2.594131 AGTAACCAAAGCCTCCAAACC 58.406 47.619 0.00 0.00 0.00 3.27
670 679 3.798889 GCAAGTAACCAAAGCCTCCAAAC 60.799 47.826 0.00 0.00 0.00 2.93
671 680 2.364002 GCAAGTAACCAAAGCCTCCAAA 59.636 45.455 0.00 0.00 0.00 3.28
672 681 1.960689 GCAAGTAACCAAAGCCTCCAA 59.039 47.619 0.00 0.00 0.00 3.53
673 682 1.144913 AGCAAGTAACCAAAGCCTCCA 59.855 47.619 0.00 0.00 0.00 3.86
674 683 1.911057 AGCAAGTAACCAAAGCCTCC 58.089 50.000 0.00 0.00 0.00 4.30
675 684 4.299155 GAAAAGCAAGTAACCAAAGCCTC 58.701 43.478 0.00 0.00 0.00 4.70
676 685 3.069586 GGAAAAGCAAGTAACCAAAGCCT 59.930 43.478 0.00 0.00 0.00 4.58
677 686 3.390135 GGAAAAGCAAGTAACCAAAGCC 58.610 45.455 0.00 0.00 0.00 4.35
678 687 3.181470 TGGGAAAAGCAAGTAACCAAAGC 60.181 43.478 0.00 0.00 0.00 3.51
679 688 4.099419 AGTGGGAAAAGCAAGTAACCAAAG 59.901 41.667 0.00 0.00 0.00 2.77
680 689 4.027437 AGTGGGAAAAGCAAGTAACCAAA 58.973 39.130 0.00 0.00 0.00 3.28
681 690 3.637769 AGTGGGAAAAGCAAGTAACCAA 58.362 40.909 0.00 0.00 0.00 3.67
682 691 3.306472 AGTGGGAAAAGCAAGTAACCA 57.694 42.857 0.00 0.00 0.00 3.67
683 692 3.190744 GCTAGTGGGAAAAGCAAGTAACC 59.809 47.826 0.00 0.00 36.26 2.85
684 693 3.190744 GGCTAGTGGGAAAAGCAAGTAAC 59.809 47.826 0.00 0.00 38.01 2.50
685 694 3.181438 TGGCTAGTGGGAAAAGCAAGTAA 60.181 43.478 0.00 0.00 38.01 2.24
686 695 2.373836 TGGCTAGTGGGAAAAGCAAGTA 59.626 45.455 0.00 0.00 38.01 2.24
687 696 1.144913 TGGCTAGTGGGAAAAGCAAGT 59.855 47.619 0.00 0.00 38.01 3.16
688 697 1.815003 CTGGCTAGTGGGAAAAGCAAG 59.185 52.381 0.00 0.00 38.01 4.01
689 698 1.909700 CTGGCTAGTGGGAAAAGCAA 58.090 50.000 0.00 0.00 38.01 3.91
690 699 0.609131 GCTGGCTAGTGGGAAAAGCA 60.609 55.000 0.00 0.00 38.01 3.91
691 700 1.315981 GGCTGGCTAGTGGGAAAAGC 61.316 60.000 0.00 0.00 35.47 3.51
745 754 2.673775 TGTTGGCATTTGAGAAGGGA 57.326 45.000 0.00 0.00 0.00 4.20
792 805 6.024552 TGTCAAATCTTCTAATGGCCAAAC 57.975 37.500 10.96 0.00 0.00 2.93
796 809 6.071952 TGTCTTTGTCAAATCTTCTAATGGCC 60.072 38.462 0.00 0.00 0.00 5.36
811 825 6.410942 TCATTCTCTTCTCTGTCTTTGTCA 57.589 37.500 0.00 0.00 0.00 3.58
837 878 2.097954 CGCACTACATTGTGGAATGCAT 59.902 45.455 7.20 0.00 42.54 3.96
839 880 1.468520 ACGCACTACATTGTGGAATGC 59.531 47.619 7.20 6.44 42.54 3.56
844 885 1.390123 CTCGAACGCACTACATTGTGG 59.610 52.381 0.00 0.00 38.31 4.17
847 888 2.535984 GGATCTCGAACGCACTACATTG 59.464 50.000 0.00 0.00 0.00 2.82
851 892 2.186076 CTTGGATCTCGAACGCACTAC 58.814 52.381 0.00 0.00 0.00 2.73
860 901 1.616865 ACGGTCAAACTTGGATCTCGA 59.383 47.619 0.00 0.00 0.00 4.04
896 946 8.786826 AATTTCAGAATTCAACATACTCGGTA 57.213 30.769 8.44 0.00 29.53 4.02
921 971 3.797331 CAGAGGTGCTGGACAGGA 58.203 61.111 0.77 0.00 41.07 3.86
945 995 3.195610 TGCGGAAGAAGAGAAGAAGCATA 59.804 43.478 0.00 0.00 0.00 3.14
1020 1152 8.825667 AAATAACAATTTGTGTAATGGGTGTC 57.174 30.769 2.13 0.00 40.60 3.67
1062 1194 2.919228 AGTTTGCTTCGTTCCTCTGTT 58.081 42.857 0.00 0.00 0.00 3.16
1063 1195 2.622064 AGTTTGCTTCGTTCCTCTGT 57.378 45.000 0.00 0.00 0.00 3.41
1064 1196 3.807622 TGTTAGTTTGCTTCGTTCCTCTG 59.192 43.478 0.00 0.00 0.00 3.35
1065 1197 4.067972 TGTTAGTTTGCTTCGTTCCTCT 57.932 40.909 0.00 0.00 0.00 3.69
1066 1198 4.142881 GGATGTTAGTTTGCTTCGTTCCTC 60.143 45.833 0.00 0.00 0.00 3.71
1095 1227 1.135139 CACCATCCTCGTTCGTCTCAT 59.865 52.381 0.00 0.00 0.00 2.90
1114 1246 2.962569 CCGCAGAGGAGTTCGTCA 59.037 61.111 4.83 0.00 45.00 4.35
1160 1292 3.490078 CGCTAAGGAAAACCAGCAAAACA 60.490 43.478 0.00 0.00 33.55 2.83
1208 1340 0.305313 GCTTACGGTTGTTGACGCAA 59.695 50.000 0.00 0.00 0.00 4.85
1211 1343 1.723003 GGTAGCTTACGGTTGTTGACG 59.277 52.381 0.00 0.00 0.00 4.35
1213 1345 2.366266 AGTGGTAGCTTACGGTTGTTGA 59.634 45.455 0.00 0.00 0.00 3.18
1217 1349 1.076332 GCAGTGGTAGCTTACGGTTG 58.924 55.000 0.00 0.00 0.00 3.77
1220 1352 1.084370 GCAGCAGTGGTAGCTTACGG 61.084 60.000 0.00 0.00 41.14 4.02
1221 1353 0.108615 AGCAGCAGTGGTAGCTTACG 60.109 55.000 11.77 0.00 41.14 3.18
1222 1354 1.338200 ACAGCAGCAGTGGTAGCTTAC 60.338 52.381 14.05 0.00 41.14 2.34
1223 1355 0.976641 ACAGCAGCAGTGGTAGCTTA 59.023 50.000 14.05 0.00 41.14 3.09
1224 1356 0.109342 AACAGCAGCAGTGGTAGCTT 59.891 50.000 14.05 6.25 41.14 3.74
1225 1357 0.321122 GAACAGCAGCAGTGGTAGCT 60.321 55.000 11.77 11.77 44.62 3.32
1226 1358 1.301677 GGAACAGCAGCAGTGGTAGC 61.302 60.000 0.00 1.46 31.49 3.58
1227 1359 0.322975 AGGAACAGCAGCAGTGGTAG 59.677 55.000 0.00 0.00 31.49 3.18
1278 1410 5.130350 ACCAAGTTAGCTAGCAAGAAAACA 58.870 37.500 18.83 0.00 0.00 2.83
1300 1432 6.468000 GCCGCTACACACAAGATAAATAAAAC 59.532 38.462 0.00 0.00 0.00 2.43
1305 1437 2.607635 CGCCGCTACACACAAGATAAAT 59.392 45.455 0.00 0.00 0.00 1.40
1388 1524 7.336679 CACCACAAGAACATAATATCTGGTTCA 59.663 37.037 12.85 0.00 41.49 3.18
1417 1553 9.128107 CAATACAAAAACATACACAAGGTGATC 57.872 33.333 2.98 0.00 36.96 2.92
1424 1560 8.976471 CATCAAGCAATACAAAAACATACACAA 58.024 29.630 0.00 0.00 0.00 3.33
1429 1565 9.539825 ACAAACATCAAGCAATACAAAAACATA 57.460 25.926 0.00 0.00 0.00 2.29
1436 1572 8.355913 TCACAATACAAACATCAAGCAATACAA 58.644 29.630 0.00 0.00 0.00 2.41
1437 1573 7.807433 GTCACAATACAAACATCAAGCAATACA 59.193 33.333 0.00 0.00 0.00 2.29
1485 1621 9.885743 GCAAAATATTTCGAATGACACAAATAC 57.114 29.630 0.00 0.00 0.00 1.89
1510 1647 7.655490 AGCTCATAAATGGTTTGATAGATTGC 58.345 34.615 0.00 0.00 0.00 3.56
1542 1679 5.843019 AGAGTAGGGTTCCTCAAATTTCA 57.157 39.130 0.00 0.00 34.61 2.69
1557 1694 7.872881 TCTTCAGCATATAAACGTAGAGTAGG 58.127 38.462 0.00 0.00 0.00 3.18
1561 1698 7.148641 ACCATCTTCAGCATATAAACGTAGAG 58.851 38.462 0.00 0.00 0.00 2.43
1562 1699 7.050970 ACCATCTTCAGCATATAAACGTAGA 57.949 36.000 0.00 0.00 0.00 2.59
1563 1700 7.307396 CCAACCATCTTCAGCATATAAACGTAG 60.307 40.741 0.00 0.00 0.00 3.51
1567 1710 6.095440 ACACCAACCATCTTCAGCATATAAAC 59.905 38.462 0.00 0.00 0.00 2.01
1575 1718 4.009675 TGATAACACCAACCATCTTCAGC 58.990 43.478 0.00 0.00 0.00 4.26
1597 1740 6.938030 TGATTTCGTTGTTTTAGGTATGAGGT 59.062 34.615 0.00 0.00 0.00 3.85
1615 1758 9.577003 GTTTAGTAGTTGTTAACACTGATTTCG 57.423 33.333 8.07 0.00 0.00 3.46
1630 1773 4.024641 GGTGGTTTGGACGTTTAGTAGTTG 60.025 45.833 0.00 0.00 0.00 3.16
1636 1779 1.265905 GCAGGTGGTTTGGACGTTTAG 59.734 52.381 0.00 0.00 0.00 1.85
1637 1780 1.310904 GCAGGTGGTTTGGACGTTTA 58.689 50.000 0.00 0.00 0.00 2.01
1638 1781 0.681564 TGCAGGTGGTTTGGACGTTT 60.682 50.000 0.00 0.00 0.00 3.60
1639 1782 0.467290 ATGCAGGTGGTTTGGACGTT 60.467 50.000 0.00 0.00 0.00 3.99
1640 1783 0.398696 TATGCAGGTGGTTTGGACGT 59.601 50.000 0.00 0.00 0.00 4.34
1641 1784 1.750193 ATATGCAGGTGGTTTGGACG 58.250 50.000 0.00 0.00 0.00 4.79
1642 1785 4.207165 ACATATATGCAGGTGGTTTGGAC 58.793 43.478 12.79 0.00 0.00 4.02
1643 1786 4.518278 ACATATATGCAGGTGGTTTGGA 57.482 40.909 12.79 0.00 0.00 3.53
1675 1818 1.621992 TATTTTTGGCGGGTTGCTCA 58.378 45.000 0.00 0.00 45.43 4.26
1684 1827 4.977963 CACTGGCAGATATTATTTTTGGCG 59.022 41.667 23.66 0.00 37.16 5.69
1693 1836 3.643320 ACAGCTAGCACTGGCAGATATTA 59.357 43.478 23.66 7.01 44.61 0.98
1723 1866 3.683340 GGTTAATCACCGACCTTCTCAAC 59.317 47.826 0.00 0.00 35.12 3.18
1724 1867 3.934068 GGTTAATCACCGACCTTCTCAA 58.066 45.455 0.00 0.00 35.12 3.02
1744 1891 4.343814 AGTGGGGACATTTTTAACACTTGG 59.656 41.667 0.00 0.00 46.14 3.61
1772 1919 6.998074 CCATCCCAGTGTTTATGCTATTCTTA 59.002 38.462 0.00 0.00 0.00 2.10
1777 1924 3.117550 TGCCATCCCAGTGTTTATGCTAT 60.118 43.478 0.00 0.00 0.00 2.97
1780 1927 1.406539 CTGCCATCCCAGTGTTTATGC 59.593 52.381 0.00 0.00 0.00 3.14
1781 1928 2.684881 GTCTGCCATCCCAGTGTTTATG 59.315 50.000 0.00 0.00 34.47 1.90
1782 1929 2.308570 TGTCTGCCATCCCAGTGTTTAT 59.691 45.455 0.00 0.00 34.47 1.40
1783 1930 1.702401 TGTCTGCCATCCCAGTGTTTA 59.298 47.619 0.00 0.00 34.47 2.01
1784 1931 0.478072 TGTCTGCCATCCCAGTGTTT 59.522 50.000 0.00 0.00 34.47 2.83
1785 1932 0.700564 ATGTCTGCCATCCCAGTGTT 59.299 50.000 0.00 0.00 34.47 3.32
1786 1933 0.700564 AATGTCTGCCATCCCAGTGT 59.299 50.000 0.00 0.00 34.47 3.55
1787 1934 2.292267 GTAATGTCTGCCATCCCAGTG 58.708 52.381 0.00 0.00 34.47 3.66
1788 1935 1.915489 TGTAATGTCTGCCATCCCAGT 59.085 47.619 0.00 0.00 34.47 4.00
1789 1936 2.715749 TGTAATGTCTGCCATCCCAG 57.284 50.000 0.00 0.00 31.75 4.45
1790 1937 3.202818 AGAATGTAATGTCTGCCATCCCA 59.797 43.478 0.00 0.00 31.75 4.37
1791 1938 3.825328 AGAATGTAATGTCTGCCATCCC 58.175 45.455 0.00 0.00 31.75 3.85
1792 1939 6.058183 ACTAAGAATGTAATGTCTGCCATCC 58.942 40.000 0.00 0.00 31.75 3.51
1793 1940 8.839310 ATACTAAGAATGTAATGTCTGCCATC 57.161 34.615 0.00 0.00 31.75 3.51
1794 1941 9.632638 AAATACTAAGAATGTAATGTCTGCCAT 57.367 29.630 0.00 0.00 34.36 4.40
1795 1942 9.461312 AAAATACTAAGAATGTAATGTCTGCCA 57.539 29.630 0.00 0.00 0.00 4.92
1804 1951 9.249053 TGCCATGGAAAAATACTAAGAATGTAA 57.751 29.630 18.40 0.00 0.00 2.41
1805 1952 8.815565 TGCCATGGAAAAATACTAAGAATGTA 57.184 30.769 18.40 0.00 0.00 2.29
1806 1953 7.716799 TGCCATGGAAAAATACTAAGAATGT 57.283 32.000 18.40 0.00 0.00 2.71
1807 1954 8.636213 AGATGCCATGGAAAAATACTAAGAATG 58.364 33.333 18.40 0.00 0.00 2.67
1808 1955 8.773033 AGATGCCATGGAAAAATACTAAGAAT 57.227 30.769 18.40 0.00 0.00 2.40
1809 1956 9.866655 ATAGATGCCATGGAAAAATACTAAGAA 57.133 29.630 18.40 0.00 0.00 2.52
1810 1957 9.866655 AATAGATGCCATGGAAAAATACTAAGA 57.133 29.630 18.40 0.00 0.00 2.10
1815 1962 9.476202 GGTAAAATAGATGCCATGGAAAAATAC 57.524 33.333 18.40 5.98 0.00 1.89
1816 1963 9.206690 TGGTAAAATAGATGCCATGGAAAAATA 57.793 29.630 18.40 0.00 0.00 1.40
1817 1964 8.088463 TGGTAAAATAGATGCCATGGAAAAAT 57.912 30.769 18.40 2.31 0.00 1.82
1818 1965 7.487822 TGGTAAAATAGATGCCATGGAAAAA 57.512 32.000 18.40 0.00 0.00 1.94
1819 1966 7.398618 TCTTGGTAAAATAGATGCCATGGAAAA 59.601 33.333 18.40 0.00 32.37 2.29
1820 1967 6.894654 TCTTGGTAAAATAGATGCCATGGAAA 59.105 34.615 18.40 2.28 32.37 3.13
1821 1968 6.430864 TCTTGGTAAAATAGATGCCATGGAA 58.569 36.000 18.40 4.87 32.37 3.53
1822 1969 6.012337 TCTTGGTAAAATAGATGCCATGGA 57.988 37.500 18.40 0.31 32.37 3.41
1823 1970 6.064060 TCTCTTGGTAAAATAGATGCCATGG 58.936 40.000 7.63 7.63 32.37 3.66
1824 1971 7.572523 TTCTCTTGGTAAAATAGATGCCATG 57.427 36.000 0.00 0.00 32.37 3.66
1825 1972 9.289782 GTATTCTCTTGGTAAAATAGATGCCAT 57.710 33.333 0.00 0.00 32.37 4.40
1826 1973 8.271458 TGTATTCTCTTGGTAAAATAGATGCCA 58.729 33.333 0.00 0.00 0.00 4.92
1827 1974 8.677148 TGTATTCTCTTGGTAAAATAGATGCC 57.323 34.615 0.00 0.00 0.00 4.40
1838 1985 9.793259 AGAAGAATTGTTTGTATTCTCTTGGTA 57.207 29.630 0.00 0.00 40.51 3.25
1839 1986 8.697507 AGAAGAATTGTTTGTATTCTCTTGGT 57.302 30.769 0.00 0.00 40.51 3.67
1840 1987 9.403110 CAAGAAGAATTGTTTGTATTCTCTTGG 57.597 33.333 17.95 8.91 40.51 3.61
1841 1988 9.956720 ACAAGAAGAATTGTTTGTATTCTCTTG 57.043 29.630 20.70 20.70 40.47 3.02
1849 1996 9.607988 TCAGTCTTACAAGAAGAATTGTTTGTA 57.392 29.630 0.00 0.00 40.47 2.41
1850 1997 8.398665 GTCAGTCTTACAAGAAGAATTGTTTGT 58.601 33.333 0.00 0.00 40.47 2.83
1851 1998 8.616076 AGTCAGTCTTACAAGAAGAATTGTTTG 58.384 33.333 0.00 0.00 40.47 2.93
1852 1999 8.616076 CAGTCAGTCTTACAAGAAGAATTGTTT 58.384 33.333 0.00 0.00 40.47 2.83
1853 2000 7.987458 TCAGTCAGTCTTACAAGAAGAATTGTT 59.013 33.333 0.00 0.00 40.47 2.83
1854 2001 7.500992 TCAGTCAGTCTTACAAGAAGAATTGT 58.499 34.615 0.00 0.00 45.19 2.71
1855 2002 7.953158 TCAGTCAGTCTTACAAGAAGAATTG 57.047 36.000 0.00 0.00 36.68 2.32
1856 2003 7.821846 GGATCAGTCAGTCTTACAAGAAGAATT 59.178 37.037 0.00 0.00 36.68 2.17
1857 2004 7.180051 AGGATCAGTCAGTCTTACAAGAAGAAT 59.820 37.037 0.00 0.00 36.68 2.40
1858 2005 6.495181 AGGATCAGTCAGTCTTACAAGAAGAA 59.505 38.462 0.00 0.00 36.68 2.52
1859 2006 6.013379 AGGATCAGTCAGTCTTACAAGAAGA 58.987 40.000 0.00 0.00 36.68 2.87
1860 2007 6.279513 AGGATCAGTCAGTCTTACAAGAAG 57.720 41.667 0.00 0.00 36.68 2.85
1861 2008 7.962995 ATAGGATCAGTCAGTCTTACAAGAA 57.037 36.000 0.00 0.00 36.68 2.52
1864 2011 9.298250 GGTATATAGGATCAGTCAGTCTTACAA 57.702 37.037 0.00 0.00 0.00 2.41
1865 2012 8.670490 AGGTATATAGGATCAGTCAGTCTTACA 58.330 37.037 0.00 0.00 0.00 2.41
1936 2083 5.745294 GTGGCATGTTGAGTTAGCATAATTG 59.255 40.000 0.00 0.00 0.00 2.32
1937 2084 5.418524 TGTGGCATGTTGAGTTAGCATAATT 59.581 36.000 0.00 0.00 0.00 1.40
1938 2085 4.949238 TGTGGCATGTTGAGTTAGCATAAT 59.051 37.500 0.00 0.00 0.00 1.28
1939 2086 4.331108 TGTGGCATGTTGAGTTAGCATAA 58.669 39.130 0.00 0.00 0.00 1.90
1940 2087 3.949132 TGTGGCATGTTGAGTTAGCATA 58.051 40.909 0.00 0.00 0.00 3.14
1941 2088 2.794103 TGTGGCATGTTGAGTTAGCAT 58.206 42.857 0.00 0.00 0.00 3.79
1942 2089 2.268762 TGTGGCATGTTGAGTTAGCA 57.731 45.000 0.00 0.00 0.00 3.49
1943 2090 3.504863 CATTGTGGCATGTTGAGTTAGC 58.495 45.455 0.00 0.00 0.00 3.09
1944 2091 3.758023 TCCATTGTGGCATGTTGAGTTAG 59.242 43.478 0.00 0.00 37.47 2.34
1945 2092 3.760738 TCCATTGTGGCATGTTGAGTTA 58.239 40.909 0.00 0.00 37.47 2.24
1946 2093 2.596346 TCCATTGTGGCATGTTGAGTT 58.404 42.857 0.00 0.00 37.47 3.01
1947 2094 2.291209 TCCATTGTGGCATGTTGAGT 57.709 45.000 0.00 0.00 37.47 3.41
1948 2095 2.756207 TCATCCATTGTGGCATGTTGAG 59.244 45.455 0.00 0.00 37.47 3.02
1949 2096 2.756207 CTCATCCATTGTGGCATGTTGA 59.244 45.455 0.00 0.00 37.47 3.18
1950 2097 2.756207 TCTCATCCATTGTGGCATGTTG 59.244 45.455 0.00 0.00 37.47 3.33
1951 2098 3.090210 TCTCATCCATTGTGGCATGTT 57.910 42.857 0.00 0.00 37.47 2.71
1952 2099 2.812836 TCTCATCCATTGTGGCATGT 57.187 45.000 0.00 0.00 37.47 3.21
1953 2100 4.158949 TCTTTTCTCATCCATTGTGGCATG 59.841 41.667 0.00 0.00 37.47 4.06
1954 2101 4.159135 GTCTTTTCTCATCCATTGTGGCAT 59.841 41.667 0.00 0.00 37.47 4.40
1955 2102 3.507233 GTCTTTTCTCATCCATTGTGGCA 59.493 43.478 0.00 0.00 37.47 4.92
1956 2103 3.426695 CGTCTTTTCTCATCCATTGTGGC 60.427 47.826 0.00 0.00 37.47 5.01
1957 2104 3.426695 GCGTCTTTTCTCATCCATTGTGG 60.427 47.826 0.00 0.00 39.43 4.17
1958 2105 3.725895 CGCGTCTTTTCTCATCCATTGTG 60.726 47.826 0.00 0.00 0.00 3.33
1959 2106 2.416547 CGCGTCTTTTCTCATCCATTGT 59.583 45.455 0.00 0.00 0.00 2.71
1960 2107 2.789092 GCGCGTCTTTTCTCATCCATTG 60.789 50.000 8.43 0.00 0.00 2.82
1961 2108 1.398390 GCGCGTCTTTTCTCATCCATT 59.602 47.619 8.43 0.00 0.00 3.16
1962 2109 1.009829 GCGCGTCTTTTCTCATCCAT 58.990 50.000 8.43 0.00 0.00 3.41
1963 2110 1.019278 GGCGCGTCTTTTCTCATCCA 61.019 55.000 8.43 0.00 0.00 3.41
1964 2111 0.741221 AGGCGCGTCTTTTCTCATCC 60.741 55.000 7.80 0.00 0.00 3.51
1965 2112 1.079503 AAGGCGCGTCTTTTCTCATC 58.920 50.000 22.34 0.00 0.00 2.92
1966 2113 2.380084 TAAGGCGCGTCTTTTCTCAT 57.620 45.000 32.81 7.81 0.00 2.90
1967 2114 1.796459 GTTAAGGCGCGTCTTTTCTCA 59.204 47.619 32.81 10.45 0.00 3.27
1968 2115 1.796459 TGTTAAGGCGCGTCTTTTCTC 59.204 47.619 32.81 18.39 0.00 2.87
1969 2116 1.873698 TGTTAAGGCGCGTCTTTTCT 58.126 45.000 32.81 9.99 0.00 2.52
1970 2117 2.505866 CATGTTAAGGCGCGTCTTTTC 58.494 47.619 32.81 23.17 0.00 2.29
1971 2118 1.401018 GCATGTTAAGGCGCGTCTTTT 60.401 47.619 32.81 11.31 0.00 2.27
1972 2119 0.168128 GCATGTTAAGGCGCGTCTTT 59.832 50.000 32.81 16.45 0.00 2.52
1973 2120 0.953471 TGCATGTTAAGGCGCGTCTT 60.953 50.000 30.49 30.49 35.30 3.01
1974 2121 0.953471 TTGCATGTTAAGGCGCGTCT 60.953 50.000 7.80 7.80 35.30 4.18
1975 2122 0.793104 GTTGCATGTTAAGGCGCGTC 60.793 55.000 0.21 0.21 35.30 5.19
1976 2123 1.209127 GTTGCATGTTAAGGCGCGT 59.791 52.632 8.43 0.00 35.30 6.01
1977 2124 1.514014 GGTTGCATGTTAAGGCGCG 60.514 57.895 0.00 0.00 35.30 6.86
1978 2125 0.173255 ATGGTTGCATGTTAAGGCGC 59.827 50.000 0.00 0.00 35.30 6.53
1979 2126 1.912001 CATGGTTGCATGTTAAGGCG 58.088 50.000 0.00 0.00 35.30 5.52
1991 2138 4.236935 GACATGTTAAGTTGGCATGGTTG 58.763 43.478 19.01 3.67 42.89 3.77
1992 2139 3.894427 TGACATGTTAAGTTGGCATGGTT 59.106 39.130 19.01 5.77 42.89 3.67
1993 2140 3.495331 TGACATGTTAAGTTGGCATGGT 58.505 40.909 19.01 9.56 42.89 3.55
1994 2141 4.158209 TGATGACATGTTAAGTTGGCATGG 59.842 41.667 19.01 7.42 41.65 3.66
1995 2142 5.313520 TGATGACATGTTAAGTTGGCATG 57.686 39.130 10.00 15.48 41.65 4.06
1996 2143 5.898174 CATGATGACATGTTAAGTTGGCAT 58.102 37.500 0.00 5.75 44.24 4.40
1997 2144 5.313520 CATGATGACATGTTAAGTTGGCA 57.686 39.130 0.00 0.00 46.01 4.92
2009 2156 4.038763 GTCATTTCCCATGCATGATGACAT 59.961 41.667 33.17 22.94 41.65 3.06
2010 2157 3.382227 GTCATTTCCCATGCATGATGACA 59.618 43.478 33.17 22.10 41.65 3.58
2011 2158 3.382227 TGTCATTTCCCATGCATGATGAC 59.618 43.478 32.34 32.34 42.11 3.06
2012 2159 3.382227 GTGTCATTTCCCATGCATGATGA 59.618 43.478 28.31 23.15 33.31 2.92
2013 2160 3.131400 TGTGTCATTTCCCATGCATGATG 59.869 43.478 28.31 21.36 29.78 3.07
2014 2161 3.131577 GTGTGTCATTTCCCATGCATGAT 59.868 43.478 28.31 10.50 29.78 2.45
2015 2162 2.492881 GTGTGTCATTTCCCATGCATGA 59.507 45.455 28.31 8.35 0.00 3.07
2016 2163 2.732912 CGTGTGTCATTTCCCATGCATG 60.733 50.000 20.19 20.19 0.00 4.06
2017 2164 1.473677 CGTGTGTCATTTCCCATGCAT 59.526 47.619 0.00 0.00 0.00 3.96
2018 2165 0.880441 CGTGTGTCATTTCCCATGCA 59.120 50.000 0.00 0.00 0.00 3.96
2019 2166 0.456653 GCGTGTGTCATTTCCCATGC 60.457 55.000 0.00 0.00 33.24 4.06
2020 2167 1.167851 AGCGTGTGTCATTTCCCATG 58.832 50.000 0.00 0.00 0.00 3.66
2021 2168 2.747446 GTTAGCGTGTGTCATTTCCCAT 59.253 45.455 0.00 0.00 0.00 4.00
2022 2169 2.147958 GTTAGCGTGTGTCATTTCCCA 58.852 47.619 0.00 0.00 0.00 4.37
2023 2170 2.147958 TGTTAGCGTGTGTCATTTCCC 58.852 47.619 0.00 0.00 0.00 3.97
2024 2171 4.083537 TGAATGTTAGCGTGTGTCATTTCC 60.084 41.667 0.00 0.00 0.00 3.13
2025 2172 5.029650 TGAATGTTAGCGTGTGTCATTTC 57.970 39.130 0.00 0.00 0.00 2.17
2026 2173 5.008613 AGTTGAATGTTAGCGTGTGTCATTT 59.991 36.000 0.00 0.00 0.00 2.32
2027 2174 4.515191 AGTTGAATGTTAGCGTGTGTCATT 59.485 37.500 0.00 0.00 0.00 2.57
2028 2175 4.065088 AGTTGAATGTTAGCGTGTGTCAT 58.935 39.130 0.00 0.00 0.00 3.06
2029 2176 3.462982 AGTTGAATGTTAGCGTGTGTCA 58.537 40.909 0.00 0.00 0.00 3.58
2030 2177 5.550981 CATAGTTGAATGTTAGCGTGTGTC 58.449 41.667 0.00 0.00 0.00 3.67
2031 2178 4.142902 GCATAGTTGAATGTTAGCGTGTGT 60.143 41.667 0.00 0.00 0.00 3.72
2032 2179 4.334443 GCATAGTTGAATGTTAGCGTGTG 58.666 43.478 0.00 0.00 0.00 3.82
2033 2180 3.374058 GGCATAGTTGAATGTTAGCGTGT 59.626 43.478 0.00 0.00 0.00 4.49
2034 2181 3.373748 TGGCATAGTTGAATGTTAGCGTG 59.626 43.478 0.00 0.00 0.00 5.34
2035 2182 3.605634 TGGCATAGTTGAATGTTAGCGT 58.394 40.909 0.00 0.00 0.00 5.07
2036 2183 4.142708 TGTTGGCATAGTTGAATGTTAGCG 60.143 41.667 0.00 0.00 0.00 4.26
2037 2184 5.309323 TGTTGGCATAGTTGAATGTTAGC 57.691 39.130 0.00 0.00 0.00 3.09
2038 2185 6.855836 ACATGTTGGCATAGTTGAATGTTAG 58.144 36.000 0.00 0.00 33.30 2.34
2039 2186 6.127758 GGACATGTTGGCATAGTTGAATGTTA 60.128 38.462 0.00 0.00 33.30 2.41
2040 2187 5.336690 GGACATGTTGGCATAGTTGAATGTT 60.337 40.000 0.00 0.00 33.30 2.71
2041 2188 4.158394 GGACATGTTGGCATAGTTGAATGT 59.842 41.667 0.00 0.00 33.30 2.71
2042 2189 4.440525 GGGACATGTTGGCATAGTTGAATG 60.441 45.833 0.00 0.00 33.30 2.67
2043 2190 3.701040 GGGACATGTTGGCATAGTTGAAT 59.299 43.478 0.00 0.00 33.30 2.57
2044 2191 3.088532 GGGACATGTTGGCATAGTTGAA 58.911 45.455 0.00 0.00 33.30 2.69
2045 2192 2.620367 GGGGACATGTTGGCATAGTTGA 60.620 50.000 0.00 0.00 33.30 3.18
2046 2193 1.750778 GGGGACATGTTGGCATAGTTG 59.249 52.381 0.00 0.00 33.30 3.16
2047 2194 1.357420 TGGGGACATGTTGGCATAGTT 59.643 47.619 0.00 0.00 33.30 2.24
2048 2195 0.998928 TGGGGACATGTTGGCATAGT 59.001 50.000 0.00 0.00 33.30 2.12
2049 2196 1.064463 AGTGGGGACATGTTGGCATAG 60.064 52.381 0.00 0.00 46.14 2.23
2050 2197 0.998928 AGTGGGGACATGTTGGCATA 59.001 50.000 0.00 0.00 46.14 3.14
2051 2198 0.323725 GAGTGGGGACATGTTGGCAT 60.324 55.000 0.00 0.00 46.14 4.40
2052 2199 1.074775 GAGTGGGGACATGTTGGCA 59.925 57.895 0.00 0.00 46.14 4.92
2053 2200 1.678970 GGAGTGGGGACATGTTGGC 60.679 63.158 0.00 0.00 46.14 4.52
2054 2201 0.112218 TTGGAGTGGGGACATGTTGG 59.888 55.000 0.00 0.00 46.14 3.77
2055 2202 1.993956 TTTGGAGTGGGGACATGTTG 58.006 50.000 0.00 0.00 46.14 3.33
2056 2203 2.765689 TTTTGGAGTGGGGACATGTT 57.234 45.000 0.00 0.00 46.14 2.71
2057 2204 2.765689 TTTTTGGAGTGGGGACATGT 57.234 45.000 0.00 0.00 46.14 3.21
2074 2221 7.148069 GCCATCCTAGTGTTTATGCTACTTTTT 60.148 37.037 0.00 0.00 0.00 1.94
2075 2222 6.318900 GCCATCCTAGTGTTTATGCTACTTTT 59.681 38.462 0.00 0.00 0.00 2.27
2076 2223 5.823045 GCCATCCTAGTGTTTATGCTACTTT 59.177 40.000 0.00 0.00 0.00 2.66
2077 2224 5.104527 TGCCATCCTAGTGTTTATGCTACTT 60.105 40.000 0.00 0.00 0.00 2.24
2078 2225 4.408921 TGCCATCCTAGTGTTTATGCTACT 59.591 41.667 0.00 0.00 0.00 2.57
2079 2226 4.703897 TGCCATCCTAGTGTTTATGCTAC 58.296 43.478 0.00 0.00 0.00 3.58
2080 2227 4.653801 TCTGCCATCCTAGTGTTTATGCTA 59.346 41.667 0.00 0.00 0.00 3.49
2081 2228 3.455910 TCTGCCATCCTAGTGTTTATGCT 59.544 43.478 0.00 0.00 0.00 3.79
2093 2240 5.184892 AGAAAGTAAATGTCTGCCATCCT 57.815 39.130 0.00 0.00 31.75 3.24
2159 2306 7.066766 GGATCATTCAGTCTTACAAGCAGAATT 59.933 37.037 0.00 0.00 0.00 2.17
2202 2349 9.632807 GCGAATTAGAGATAGTAATGATCAACT 57.367 33.333 0.00 1.90 0.00 3.16
2203 2350 9.632807 AGCGAATTAGAGATAGTAATGATCAAC 57.367 33.333 0.00 0.00 0.00 3.18
2214 2362 8.471361 TTGCATATTGAGCGAATTAGAGATAG 57.529 34.615 0.00 0.00 33.85 2.08
2243 2391 0.179023 TGTGGCATGTTGAGTGAGCA 60.179 50.000 0.00 0.00 0.00 4.26
2246 2394 1.887854 CCATTGTGGCATGTTGAGTGA 59.112 47.619 0.00 0.00 0.00 3.41
2247 2395 1.887854 TCCATTGTGGCATGTTGAGTG 59.112 47.619 0.00 0.00 37.47 3.51
2257 2405 2.421424 GTCTGTTCTCATCCATTGTGGC 59.579 50.000 0.00 0.00 37.47 5.01
2258 2406 2.674852 CGTCTGTTCTCATCCATTGTGG 59.325 50.000 0.00 0.00 39.43 4.17
2274 2422 1.060937 GCATGTTAAGGCGCGTCTG 59.939 57.895 16.93 1.53 0.00 3.51
2279 2427 0.240945 ACAGTTGCATGTTAAGGCGC 59.759 50.000 0.00 0.00 35.30 6.53
2297 2568 4.764679 TGATGACATGTTAAGTTGGCAC 57.235 40.909 0.00 0.00 32.66 5.01
2298 2569 5.313520 CATGATGACATGTTAAGTTGGCA 57.686 39.130 0.00 0.00 46.01 4.92
2364 2635 7.004555 ACTTTTTCCAAAGGTAAATGGGATC 57.995 36.000 0.09 0.00 43.47 3.36
2365 2636 7.071824 TGAACTTTTTCCAAAGGTAAATGGGAT 59.928 33.333 0.09 0.00 40.26 3.85
2366 2637 6.384305 TGAACTTTTTCCAAAGGTAAATGGGA 59.616 34.615 0.09 0.00 40.26 4.37
2367 2638 6.587273 TGAACTTTTTCCAAAGGTAAATGGG 58.413 36.000 0.09 0.00 40.26 4.00
2368 2639 8.499403 TTTGAACTTTTTCCAAAGGTAAATGG 57.501 30.769 0.09 0.00 40.26 3.16
2374 2645 8.952278 GGTTTATTTTGAACTTTTTCCAAAGGT 58.048 29.630 0.09 0.00 43.10 3.50
2375 2646 9.173021 AGGTTTATTTTGAACTTTTTCCAAAGG 57.827 29.630 0.09 0.00 43.47 3.11
2395 2666 9.768662 AGATTTCGTCTACAACTTTAAGGTTTA 57.231 29.630 0.00 0.00 34.69 2.01
2396 2667 8.672823 AGATTTCGTCTACAACTTTAAGGTTT 57.327 30.769 0.00 0.00 34.69 3.27
2397 2668 9.768662 TTAGATTTCGTCTACAACTTTAAGGTT 57.231 29.630 0.00 0.00 39.13 3.50
2398 2669 9.768662 TTTAGATTTCGTCTACAACTTTAAGGT 57.231 29.630 0.00 0.00 39.13 3.50
2405 2676 8.443937 GCTTTGATTTAGATTTCGTCTACAACT 58.556 33.333 0.00 0.00 39.13 3.16
2406 2677 7.692705 GGCTTTGATTTAGATTTCGTCTACAAC 59.307 37.037 0.00 0.00 39.13 3.32
2407 2678 7.606456 AGGCTTTGATTTAGATTTCGTCTACAA 59.394 33.333 0.00 0.00 39.13 2.41
2408 2679 7.064609 CAGGCTTTGATTTAGATTTCGTCTACA 59.935 37.037 0.00 0.00 39.13 2.74
2409 2680 7.277981 TCAGGCTTTGATTTAGATTTCGTCTAC 59.722 37.037 0.00 0.00 39.13 2.59
2410 2681 7.327975 TCAGGCTTTGATTTAGATTTCGTCTA 58.672 34.615 0.00 0.00 38.42 2.59
2411 2682 6.173339 TCAGGCTTTGATTTAGATTTCGTCT 58.827 36.000 0.00 0.00 41.11 4.18
2412 2683 6.422776 TCAGGCTTTGATTTAGATTTCGTC 57.577 37.500 0.00 0.00 0.00 4.20
2413 2684 6.431234 AGTTCAGGCTTTGATTTAGATTTCGT 59.569 34.615 0.00 0.00 35.27 3.85
2414 2685 6.846350 AGTTCAGGCTTTGATTTAGATTTCG 58.154 36.000 0.00 0.00 35.27 3.46
2427 2698 4.895297 TCCAAGATTCAAAGTTCAGGCTTT 59.105 37.500 0.00 0.00 39.05 3.51
2428 2699 4.473444 TCCAAGATTCAAAGTTCAGGCTT 58.527 39.130 0.00 0.00 0.00 4.35
2429 2700 4.104383 TCCAAGATTCAAAGTTCAGGCT 57.896 40.909 0.00 0.00 0.00 4.58
2430 2701 4.853924 TTCCAAGATTCAAAGTTCAGGC 57.146 40.909 0.00 0.00 0.00 4.85
2431 2702 6.088824 CGATTTCCAAGATTCAAAGTTCAGG 58.911 40.000 0.00 0.00 0.00 3.86
2432 2703 6.088824 CCGATTTCCAAGATTCAAAGTTCAG 58.911 40.000 0.00 0.00 0.00 3.02
2433 2704 5.564651 GCCGATTTCCAAGATTCAAAGTTCA 60.565 40.000 0.00 0.00 0.00 3.18
2434 2705 4.859245 GCCGATTTCCAAGATTCAAAGTTC 59.141 41.667 0.00 0.00 0.00 3.01
2435 2706 4.280677 TGCCGATTTCCAAGATTCAAAGTT 59.719 37.500 0.00 0.00 0.00 2.66
2436 2707 3.826157 TGCCGATTTCCAAGATTCAAAGT 59.174 39.130 0.00 0.00 0.00 2.66
2437 2708 4.082571 AGTGCCGATTTCCAAGATTCAAAG 60.083 41.667 0.00 0.00 0.00 2.77
2438 2709 3.826157 AGTGCCGATTTCCAAGATTCAAA 59.174 39.130 0.00 0.00 0.00 2.69
2439 2710 3.420893 AGTGCCGATTTCCAAGATTCAA 58.579 40.909 0.00 0.00 0.00 2.69
2440 2711 3.009723 GAGTGCCGATTTCCAAGATTCA 58.990 45.455 0.00 0.00 0.00 2.57
2441 2712 3.274288 AGAGTGCCGATTTCCAAGATTC 58.726 45.455 0.00 0.00 0.00 2.52
2442 2713 3.356529 AGAGTGCCGATTTCCAAGATT 57.643 42.857 0.00 0.00 0.00 2.40
2443 2714 4.080863 AGTTAGAGTGCCGATTTCCAAGAT 60.081 41.667 0.00 0.00 0.00 2.40
2444 2715 3.260884 AGTTAGAGTGCCGATTTCCAAGA 59.739 43.478 0.00 0.00 0.00 3.02
2445 2716 3.600388 AGTTAGAGTGCCGATTTCCAAG 58.400 45.455 0.00 0.00 0.00 3.61
2446 2717 3.695830 AGTTAGAGTGCCGATTTCCAA 57.304 42.857 0.00 0.00 0.00 3.53
2447 2718 3.244422 ACAAGTTAGAGTGCCGATTTCCA 60.244 43.478 0.00 0.00 0.00 3.53
2448 2719 3.335579 ACAAGTTAGAGTGCCGATTTCC 58.664 45.455 0.00 0.00 0.00 3.13
2449 2720 6.238130 GGATTACAAGTTAGAGTGCCGATTTC 60.238 42.308 0.00 0.00 0.00 2.17
2450 2721 5.585047 GGATTACAAGTTAGAGTGCCGATTT 59.415 40.000 0.00 0.00 0.00 2.17
2451 2722 5.116882 GGATTACAAGTTAGAGTGCCGATT 58.883 41.667 0.00 0.00 0.00 3.34
2452 2723 4.443034 GGGATTACAAGTTAGAGTGCCGAT 60.443 45.833 0.00 0.00 0.00 4.18
2453 2724 3.118884 GGGATTACAAGTTAGAGTGCCGA 60.119 47.826 0.00 0.00 0.00 5.54
2454 2725 3.195661 GGGATTACAAGTTAGAGTGCCG 58.804 50.000 0.00 0.00 0.00 5.69
2455 2726 3.195661 CGGGATTACAAGTTAGAGTGCC 58.804 50.000 0.00 0.00 0.00 5.01
2456 2727 3.858247 ACGGGATTACAAGTTAGAGTGC 58.142 45.455 0.00 0.00 0.00 4.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.