>input_sequence_78929
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-----------CTATTTAAGTGCTTGAGTTGGACACCCATTACACAAATTGTTATTTTGCCTCCCCAAGTAGAAACAGAG
GAACGAAGCAAACTAACATCCATCTCATGAGACGAACGAGGATGGTGACGAACTCCTCTGCGGCCTCGGTTCGGCTGATG
CTGATCCTCCTTGTTTTGCTGGTTTTCCTTAGCGGTATCCTCGCACGTGGACCGTCCACTTGCGTCAACAACCGTAAGCT
ACCACTGCTGCTGTTCCTATGCGTGAACCAAACAAGTTAAATCATGTACTGTTTTCTTGCTAGCTAACTTGGTTTTATTT
ATCTTGTGTGTAGCGGCGGTTCAGCGAGACTGCCCGCCGATCCGTGGTGGCCGCTGAGGACGAGC----ATGCTGTTTTT
GTGTGAACCAGATATTATGTTCTTGTGGTGTCGATCACCTTGTGTATGTTTTTGTATTGCTTGATGTTTGTATTGTGACC
TGGTTTATAATTCA------------------------------------------------------------------
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>chr5D_1_TraesCS5D01G542900
TCCGGACTGCTAACCTTGATGTTCGCCTTTCATGGGCTCCTGGTGGCTAGCTGGTGCTTCTGCAGGCCATGTCGCCAGTA
GGGCGAGGCAAAAAGTGATTAGGTGAGACTGCCGATGTGACAAGGGGAGCAACTAGTTAAAGGGTACTCTTTGGTTGGC-
TTTCCAGAACACTCACCTTATCTTCTTTTTCCTTTTTGCGAATAACTAACATTATCTTCTCAATGTACATGATCTCTTTT
TATTTAGCGATCATCAAGTTATAAAAGTTTGACCTGGAGTAATTATAAAATGAAATATATTCTAAATGACCAACAAGCGA
AAAAGTTGTCTTGACAAATTAATAAGTTCATCAATGCTTGTTTTCCTTATGATACTTGTTCAAGGAGTCGTCACTCAATG
TACGAGGTCTTGCAGTCAATGGTAACGAAGCTGAGGTTAACATGTTAAAATTTTAATCCTCAATCATCACTGATTCCTAC
ATGTGTAGCCCAGGTAGGCACTGTGGCCACCAACTTTGACAGATGTG-------AAGTCAGGGCATGTAGAGCGCATCCG
TGCGTTCATGATGCTTCTCTTATTGTTTGTTGCAGCAGGTGTACAGAACCAAACTACCATCTCAGCCGCCTCAAGGTCCC
AATTTTCCATCTTTTGAATCAGCACGAGTAGCACGCAGGTTTGGAGGCTTTGGTTACTTGCTTTTCCCACTAGCCAGCCA
TTGCGCTCTTCAATCATCACGGTTGGCCACTTTTCCCTTCTCA----AATGCCAACAAAAGACGACATCAATGTATCTAT
ATACGTTTGGCCA-TTAGAAGATTTGACAAAGACAGAGAAGAGAATGAG---------------------------CATG
CATTCCACAATGTAGTGCGTT---------CGAGATCCAAGTTTGACCGTAAATTTAACCAACGATACCGAGTATGTTGA
ATTCTGAAATTCCTGTCCAGCACCTCTGTCAGTCTATG------------------------------------------
----------------------------------------CTTCTTCTCTTCTTCCGCATTTGCACCTAACATACTTTCA
CATGGACGAAGCTATTTAAGTGCTTGAGTTGGACACCCATTACACAAATTGTTATTTTGCCTCCCCAAGTAGAAACAGAG
GAACGAAGCAAACTAACATCCATCTCATGAGACGAACGAGGATGGTGACGAACTCCTCTGCGGCCTCGGTTCGGCTGATG
CTGATCCTCCTTGTTTTGCTGGTTTTCCTTAGCGGTATCCTCGCACGTGGACCGTCCACTTGCGTCAACAACCGTAAGCT
ACCACTGCTGCTGTTCCTATGCGTGAACCAAACAAGTTAAATCATGTACTGTTTTCTTGCTAGCTAACTTGGTTTTATTT
ATCTTGTGTGTAGCGGCGGTTCAGCGAGACTGCCCGCCGATCCGTGGTGGCCGCTGAGGACGAGC----ATGCTGTTTTT
GTGTGAACCAGATATTATGTTCTTGTGGTGTCGATCACCTTGTGTATGTTTTTGTATTGCTTGATGTTTGTATTGTGACC
TGGTTTATAATTCAATAAAAG-TATTTGTGTCATTCGAAATATTTTGCAATCTATCAAACCATTTATGAGCTTTTCTTTG
AAATTTGAGGAACCCTACTC------TACGTTTATATGCTGAAGATGGTTGGTGTTATCACCTCATACCTAAAACAACGA
AATCAGTGTTAACAACTACTAAACGTCCAAACCACCTGCATATATGTAGTGAGCAAATGAGCAACCCGCCAAAAATAATA
TCTGCCAGTGCTAGCTGTTCATCTGGTTGAGAAGGTCGGTG----ATTAACCAAGTGTTAAAAATGTCCCCACTCCAATA
AGAATAGCATAAACACTGGGATGGCAGACATTACATTCTTAGTATTTTTCCATGGCATCTATTTTACCAAGAGAATACAA
ACAATTCTTCTTGTAAGACTGACTGATCCTATATACCTAAATAAAATAGTTGATCATTACTATTTCTAATTCACTCAATA
TGCAATTATGCTAACTCAACATGCCACAATGGATGAGAAAAGACGCGCCTTAACATGCAACCATGCCAACTTAACATGTC
ATCATGCATGGGAAATGACACACGCTAACATTCAACTATGCCAACATGTCCCCACTCCAAAAAAAGTAGCATAAACACTA
GGATGGCAGACATTTACTTTCTTATTATTTTTCCATGGCATATTTTTTACCAAGAGAATACAGACAATTCTGCTTGTAAG
ACTGAATGATCCTATATACCTAATAAATAG-TTGATCATTACTATCTCTAATTCGCTCAATATGCAATTATGCTCACTCA
ACATGCCACAATGGATGAGAACAGACGCGCCT------------------------------------------------
---------------------------------------------------------------------------TAACA
TGCAACTGTGCCAACTTAACATGTCATCATGCATGGGAAAAGACACACCCTAACATGCAACTATGCCAACATGTGATCCC
ATTTACCTTTGGAAAAAGTTCAAAATAAACCTTAAAGTTGTAGACGAAATCTAAATCAAAGCCTGAACTTTGAATCTTGG
AAATCGGCACTCTAACTTGTAATCCCGTT
>chr5D_1
TCCGGACTGCTAACCTTGATGTTCGCCTTTCATGGGCTCCTAGTGGCTAGCTGGTGCGTCTGCAGGCCATGTCGCCAATA
GGGCGAGGC-AAAAGTGATTAGGCGAAACTGCCGATGTGAAAAGGGGAGCAACTAGTTAAAGGGTACTCTTTGGTTGGGT
TTTCCAGAACACTCACCTTATCTTCTTTTTCTTTTTTGCGAATAACTAACATTATCTTCTCAATGTTCATGATGTCTTTT
TATTTAGCGATTATCAAGCTATAAAAGTTTGACCTGGAGTAATTATAAAATGAAATATATTCTAAATGACCAACAAACAA
AAAATTTATCTTGACAAATTAATAAGTTCATCAATGCTTGTTTTCCTTATGATACTTGTTCAAGGAGTCGTCACTCAATG
TACGAGCTCTTGCAGTCAATGGTAACGAAGCTGAGGTTAACATGTTAAATTTTTAATCCTCAATCATCACTGATTCCTAC
ATGTGTAGCCCAGGTAGGCACTATGGCCACCAACTTTGACAGATGTGCATGTAAAAGTCAGGGCATGCAGAGCGCGTCCG
TGCGTTCATGATGCTTGTCTTATTGTTTGTTGCAGCAGGTGTACAGAACCAAACCACCATCTCAGCCGCCTCAAGGTCCC
AATTTTCCATC-------------------------------------------------CTTTTCCCACTAGCCAGCCA
TTGCGCTCTTCAATCATCACGGTTGGCCACTTTGCCCTTCTCAGAGGAATGCCAACAAAAGACGACATCAATGTATCTAT
ATACATTTCGCCATTTAGAAGATTCGACAAAGACAGAGAAGAGAATGAGACAAAGCTAAAGTCAGTCAATATACTCCTTC
CATTTCATAATATAGTGCGTCCGCGTTTTCCGAGATCCAAGTTTGACCGTAAATTTAACCAACGAGACGGAGTATGTTGA
ATTCTGAAATCCCTGTCCAGCACCTCTGTCAGTCAATGCGCATAGCACATGCGTCTATACTACCTATATATAATTGTCCG
TCACAGTCACCAACCCCCCAGCAAAAGCACCGCACCATTTCTTCTTCTCTTCTTCCGCATTTGCACCTAACATACTTTCA
CATGGACGAAGCTATTTAAGTGCTCGAGTTGAACACCCATTACACAAATTGTTATTTTGCCTCCCCAAGTAGA-----AG
GAACGAAGCAAACTAACATCCATCTCGTGAGACGAACGAGGATGGCGACGAACTCCTCTGCGGCCTCGGTTCGGCTGATG
CTGATCCTCCTCGTTTTGCTGGTATTCGTTAGCGGTATCCTCGCACGTGGACCGTCCACCTGTGCCAATAAGA------T
ACCACTGCTGCTGTTCCTATGCGTGAACCAAACAAGTTAAATCATGTACAGTTTTCTTGCTAGCTAACTTGTTTTTGTTT
ATCTTGTGTGTAGCGGCGGTTCAGCGAGACTGCCCACCGATCCGTGGTGGCCGCTGAGGACGAGCGCGCATGCTGTTTTT
GTGCGAACCAGATATTATGTTCTTGTGGTGTCCATCACCGTGTGCATGTTT--GTATTGCTTGATATTTGTATTGTCACT
TGGTTTATAATTCAATAAACTATATTTGTGTCACTCAAAATATTTTTCAATCTATCAAACCATTTATGAGCTTTTCTTGG
AAATTTGAGGAACACTAACTCTACATTACATTTATATCCTGAAGATGGTTGGTGTTATCGCCTCATACCTAAAACAATGA
AATCAGTGTTAAAAACTA--------CCAAACCACCTGCATATATGTAGTGAGCAAACGAGCAACCGGCCAAAAAGAATA
TCTGCCAGTGCTAGCTGTTCATCTGACTAAGAAGGTCGGTAATTAATTAAACAAGTGTTAAAAATGTCCCCACTCCAAAA
AGAGTAT-------------------------------------------------------------------------
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--------------------------------------------------------------------GCATAAACACTG
GGATGGCAGACAGTTACTTTCTTATTATCTTTCCCTGGCATTTATTTTACAAAGATAATACAGACGATTCTACTTGTAAG
ACTGATTGATCCTATATACCTAAATAAATAATTGATCATTAATATCTCTAATTCACTCAATATGCAATTAGGCCAACTCA
ACATTTCACAATGGATGAGAAAAGACACACCTTAACACTACAGGAATCAGCGGACGGCAAATAGCCTTTTTGCCATCTGC
CCTTTCTTTGTCGTCCGTTTGTGGAAGCGGACGGCAAAGAGGAGGCAGACGGTAAAATGCCAGATTCCAGTAGTGTAACA
TGCAACTACGCCAACTTAACATGTCATCATGCATGGGAAAAGACACACCCAAGCATGCAACTATGCCAACATGTC-----
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>SNPs
-----------------------------------------S---------------S-------------------S--
---------S-------------S--S-------------S-------------------------------------S-
-------------------------------S----------------------------------S------S------
-----------S------S---------------------------------------------------------S-S-
----S--S------------------------------------------------------------------------
------S------------------------------------------S------------------------------
----------------------S--------------------------------------------S-------S----
----------------S-------------------------------------S-------------------------
-----------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--------------------
---------------------------------S----------------------------------------------
----S---S---------------S----------------------------------------------------S-S
----S--S---S--------S--------------------------------------------S--S-----------
----------S-----------------------S---------------------------------------------
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------------------------S------S-----------------------------------------SSSSS--
--------------------------S------------------S----------------------------------
-----------S-----------S---S-------------------------------S--S-S---S--SSSSSSSS-
-------------------------------------------------S---------------------S----S---
-----------------------------------S--------------------------------------------
---S----------------------------S------S----S------SS------------S----------S--S
-------------------SS------------S--S---------S-------------------------------S-
-------------S---SSS---------S-------S---------------------S-----------------S--
------------S-----SSSSSSSS-------------------------------S--------S--------S----
-------------------------SS-S-----------S---------S---------------------------S-
---S--SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----------S
------------S---------------S-----S------S-S------S----S---------S-----S--------
-----S-----------------SS--SSS-----------S------------S---------------S--SS-----
----SS---------------S----S-S---------------------------------------------------
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-------SS-----------------------------------------S-S---------------------SSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_995
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---------------TCCAGCACCTCTGTCAGTCT---------------------------------------------
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>reverse_2201
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----------------------------------------CCAACATGTCCCCACTCCAA--------------------
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