Multiple sequence alignment - TraesCS5D01G532200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G532200 chr5D 100.000 3005 0 0 1 3005 547417156 547420160 0.000000e+00 5550.0
1 TraesCS5D01G532200 chr5D 92.769 650 35 6 1227 1864 547495278 547495927 0.000000e+00 929.0
2 TraesCS5D01G532200 chr5D 90.667 150 7 3 2321 2465 547496202 547496349 3.060000e-45 193.0
3 TraesCS5D01G532200 chr5D 88.312 77 9 0 2007 2083 547495955 547496031 3.190000e-15 93.5
4 TraesCS5D01G532200 chr5D 93.103 58 4 0 2538 2595 547419662 547419719 5.340000e-13 86.1
5 TraesCS5D01G532200 chr5D 93.103 58 4 0 2507 2564 547419693 547419750 5.340000e-13 86.1
6 TraesCS5D01G532200 chr4A 88.571 1015 54 27 915 1878 621515628 621514625 0.000000e+00 1175.0
7 TraesCS5D01G532200 chr4A 90.638 470 31 3 2536 3005 621513585 621513129 1.980000e-171 612.0
8 TraesCS5D01G532200 chr4A 82.317 492 67 11 156 631 621482484 621481997 2.790000e-110 409.0
9 TraesCS5D01G532200 chr4A 93.117 247 14 3 2321 2567 621513766 621513523 2.850000e-95 359.0
10 TraesCS5D01G532200 chr4A 85.764 288 26 4 725 1005 621480528 621480249 1.050000e-74 291.0
11 TraesCS5D01G532200 chr4A 100.000 52 0 0 2174 2225 621513918 621513867 2.470000e-16 97.1
12 TraesCS5D01G532200 chr5B 85.219 1096 92 35 734 1802 690951832 690952884 0.000000e+00 1062.0
13 TraesCS5D01G532200 chr5B 80.597 402 53 9 2139 2535 690953604 690953985 1.360000e-73 287.0
14 TraesCS5D01G532200 chr7B 83.968 761 76 24 1082 1808 654327406 654328154 0.000000e+00 688.0
15 TraesCS5D01G532200 chr7B 81.857 463 41 23 1082 1509 654708686 654709140 1.710000e-92 350.0
16 TraesCS5D01G532200 chr7A 83.016 789 66 35 1075 1808 675577514 675578289 0.000000e+00 652.0
17 TraesCS5D01G532200 chr7D 82.992 782 66 33 1082 1808 585541388 585542157 0.000000e+00 645.0
18 TraesCS5D01G532200 chr5A 77.869 366 62 16 2638 2996 488441238 488441591 3.040000e-50 209.0
19 TraesCS5D01G532200 chr3D 72.802 364 72 20 2588 2945 398303907 398303565 6.860000e-17 99.0
20 TraesCS5D01G532200 chr6D 94.000 50 2 1 1905 1953 408946819 408946770 1.160000e-09 75.0
21 TraesCS5D01G532200 chr3A 84.211 57 6 3 2650 2704 496043177 496043122 5.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G532200 chr5D 547417156 547420160 3004 False 1907.400000 5550 95.402000 1 3005 3 chr5D.!!$F1 3004
1 TraesCS5D01G532200 chr5D 547495278 547496349 1071 False 405.166667 929 90.582667 1227 2465 3 chr5D.!!$F2 1238
2 TraesCS5D01G532200 chr4A 621513129 621515628 2499 True 560.775000 1175 93.081500 915 3005 4 chr4A.!!$R2 2090
3 TraesCS5D01G532200 chr4A 621480249 621482484 2235 True 350.000000 409 84.040500 156 1005 2 chr4A.!!$R1 849
4 TraesCS5D01G532200 chr5B 690951832 690953985 2153 False 674.500000 1062 82.908000 734 2535 2 chr5B.!!$F1 1801
5 TraesCS5D01G532200 chr7B 654327406 654328154 748 False 688.000000 688 83.968000 1082 1808 1 chr7B.!!$F1 726
6 TraesCS5D01G532200 chr7A 675577514 675578289 775 False 652.000000 652 83.016000 1075 1808 1 chr7A.!!$F1 733
7 TraesCS5D01G532200 chr7D 585541388 585542157 769 False 645.000000 645 82.992000 1082 1808 1 chr7D.!!$F1 726

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
29 30 0.039180 AGGCGGTTCCCCTTTTTAGG 59.961 55.0 0.0 0.0 34.51 2.69 F
1080 2503 0.249741 CCCACGGAAACAACTCGTCT 60.250 55.0 0.0 0.0 34.73 4.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1887 3447 0.736636 GCGGCCGGCTATTTAAAACT 59.263 50.0 29.38 0.0 39.11 2.66 R
2925 5237 0.311477 GGCGTCGGAGTAGATTCCTC 59.689 60.0 0.00 0.0 34.96 3.71 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 2.979130 GATGCTACTGAGGCGGTTC 58.021 57.895 0.00 0.00 0.00 3.62
19 20 0.530870 GATGCTACTGAGGCGGTTCC 60.531 60.000 0.00 0.00 0.00 3.62
20 21 1.972660 ATGCTACTGAGGCGGTTCCC 61.973 60.000 0.00 0.00 34.51 3.97
21 22 2.901042 CTACTGAGGCGGTTCCCC 59.099 66.667 0.00 0.00 34.51 4.81
22 23 1.686110 CTACTGAGGCGGTTCCCCT 60.686 63.158 0.00 0.00 34.51 4.79
23 24 1.229400 TACTGAGGCGGTTCCCCTT 60.229 57.895 0.00 0.00 34.51 3.95
24 25 0.838987 TACTGAGGCGGTTCCCCTTT 60.839 55.000 0.00 0.00 34.51 3.11
25 26 1.074951 CTGAGGCGGTTCCCCTTTT 59.925 57.895 1.58 0.00 34.51 2.27
26 27 0.539669 CTGAGGCGGTTCCCCTTTTT 60.540 55.000 1.58 0.00 34.51 1.94
27 28 0.772384 TGAGGCGGTTCCCCTTTTTA 59.228 50.000 1.58 0.00 34.51 1.52
28 29 1.271707 TGAGGCGGTTCCCCTTTTTAG 60.272 52.381 1.58 0.00 34.51 1.85
29 30 0.039180 AGGCGGTTCCCCTTTTTAGG 59.961 55.000 0.00 0.00 34.51 2.69
30 31 1.601419 GGCGGTTCCCCTTTTTAGGC 61.601 60.000 0.00 0.00 0.00 3.93
31 32 1.929806 GCGGTTCCCCTTTTTAGGCG 61.930 60.000 0.00 0.00 0.00 5.52
32 33 0.607217 CGGTTCCCCTTTTTAGGCGT 60.607 55.000 0.00 0.00 0.00 5.68
33 34 1.171308 GGTTCCCCTTTTTAGGCGTC 58.829 55.000 0.00 0.00 0.00 5.19
34 35 0.800631 GTTCCCCTTTTTAGGCGTCG 59.199 55.000 0.00 0.00 0.00 5.12
35 36 0.397564 TTCCCCTTTTTAGGCGTCGT 59.602 50.000 0.00 0.00 0.00 4.34
36 37 0.320946 TCCCCTTTTTAGGCGTCGTG 60.321 55.000 0.00 0.00 0.00 4.35
37 38 1.500396 CCCTTTTTAGGCGTCGTGC 59.500 57.895 0.00 0.00 45.38 5.34
46 47 4.993945 GCGTCGTGCGTGTGCTTG 62.994 66.667 0.00 0.00 43.34 4.01
47 48 3.626244 CGTCGTGCGTGTGCTTGT 61.626 61.111 0.00 0.00 43.34 3.16
48 49 2.297195 CGTCGTGCGTGTGCTTGTA 61.297 57.895 0.00 0.00 43.34 2.41
49 50 1.813212 CGTCGTGCGTGTGCTTGTAA 61.813 55.000 0.00 0.00 43.34 2.41
50 51 0.302288 GTCGTGCGTGTGCTTGTAAA 59.698 50.000 0.00 0.00 43.34 2.01
51 52 1.070175 GTCGTGCGTGTGCTTGTAAAT 60.070 47.619 0.00 0.00 43.34 1.40
52 53 1.193650 TCGTGCGTGTGCTTGTAAATC 59.806 47.619 0.00 0.00 43.34 2.17
53 54 1.070242 CGTGCGTGTGCTTGTAAATCA 60.070 47.619 0.00 0.00 43.34 2.57
54 55 2.412716 CGTGCGTGTGCTTGTAAATCAT 60.413 45.455 0.00 0.00 43.34 2.45
55 56 3.564511 GTGCGTGTGCTTGTAAATCATT 58.435 40.909 0.00 0.00 43.34 2.57
56 57 3.361644 GTGCGTGTGCTTGTAAATCATTG 59.638 43.478 0.00 0.00 43.34 2.82
57 58 3.004210 TGCGTGTGCTTGTAAATCATTGT 59.996 39.130 0.00 0.00 43.34 2.71
58 59 4.214332 TGCGTGTGCTTGTAAATCATTGTA 59.786 37.500 0.00 0.00 43.34 2.41
59 60 5.150683 GCGTGTGCTTGTAAATCATTGTAA 58.849 37.500 0.00 0.00 38.39 2.41
60 61 5.283717 GCGTGTGCTTGTAAATCATTGTAAG 59.716 40.000 0.00 0.00 38.39 2.34
61 62 5.283717 CGTGTGCTTGTAAATCATTGTAAGC 59.716 40.000 0.00 0.00 38.36 3.09
62 63 6.148948 GTGTGCTTGTAAATCATTGTAAGCA 58.851 36.000 10.53 10.53 41.90 3.91
63 64 6.306356 GTGTGCTTGTAAATCATTGTAAGCAG 59.694 38.462 13.53 0.00 43.30 4.24
64 65 6.206438 TGTGCTTGTAAATCATTGTAAGCAGA 59.794 34.615 13.53 10.94 43.30 4.26
65 66 7.083858 GTGCTTGTAAATCATTGTAAGCAGAA 58.916 34.615 13.53 0.00 43.30 3.02
66 67 7.061094 GTGCTTGTAAATCATTGTAAGCAGAAC 59.939 37.037 13.53 3.21 43.30 3.01
67 68 6.249260 GCTTGTAAATCATTGTAAGCAGAACG 59.751 38.462 0.00 0.00 38.06 3.95
68 69 7.428282 TTGTAAATCATTGTAAGCAGAACGA 57.572 32.000 0.00 0.00 0.00 3.85
69 70 6.827641 TGTAAATCATTGTAAGCAGAACGAC 58.172 36.000 0.00 0.00 0.00 4.34
70 71 6.649141 TGTAAATCATTGTAAGCAGAACGACT 59.351 34.615 0.00 0.00 0.00 4.18
72 73 3.325870 TCATTGTAAGCAGAACGACTGG 58.674 45.455 13.82 0.36 45.82 4.00
73 74 3.006430 TCATTGTAAGCAGAACGACTGGA 59.994 43.478 13.82 1.18 45.82 3.86
74 75 3.462483 TTGTAAGCAGAACGACTGGAA 57.538 42.857 13.82 0.00 45.82 3.53
75 76 3.678056 TGTAAGCAGAACGACTGGAAT 57.322 42.857 13.82 0.00 45.82 3.01
76 77 3.325870 TGTAAGCAGAACGACTGGAATG 58.674 45.455 13.82 0.00 45.82 2.67
77 78 2.550830 AAGCAGAACGACTGGAATGT 57.449 45.000 13.82 0.00 45.82 2.71
78 79 1.800805 AGCAGAACGACTGGAATGTG 58.199 50.000 13.82 0.00 45.82 3.21
79 80 0.798776 GCAGAACGACTGGAATGTGG 59.201 55.000 13.82 0.00 45.82 4.17
80 81 1.442769 CAGAACGACTGGAATGTGGG 58.557 55.000 0.00 0.00 42.39 4.61
81 82 1.001974 CAGAACGACTGGAATGTGGGA 59.998 52.381 0.00 0.00 42.39 4.37
82 83 1.276421 AGAACGACTGGAATGTGGGAG 59.724 52.381 0.00 0.00 0.00 4.30
83 84 1.275291 GAACGACTGGAATGTGGGAGA 59.725 52.381 0.00 0.00 0.00 3.71
84 85 0.898320 ACGACTGGAATGTGGGAGAG 59.102 55.000 0.00 0.00 0.00 3.20
85 86 1.186200 CGACTGGAATGTGGGAGAGA 58.814 55.000 0.00 0.00 0.00 3.10
86 87 1.759445 CGACTGGAATGTGGGAGAGAT 59.241 52.381 0.00 0.00 0.00 2.75
87 88 2.169352 CGACTGGAATGTGGGAGAGATT 59.831 50.000 0.00 0.00 0.00 2.40
88 89 3.539604 GACTGGAATGTGGGAGAGATTG 58.460 50.000 0.00 0.00 0.00 2.67
89 90 3.184628 ACTGGAATGTGGGAGAGATTGA 58.815 45.455 0.00 0.00 0.00 2.57
90 91 3.588842 ACTGGAATGTGGGAGAGATTGAA 59.411 43.478 0.00 0.00 0.00 2.69
91 92 4.229123 ACTGGAATGTGGGAGAGATTGAAT 59.771 41.667 0.00 0.00 0.00 2.57
92 93 5.197224 TGGAATGTGGGAGAGATTGAATT 57.803 39.130 0.00 0.00 0.00 2.17
93 94 5.195940 TGGAATGTGGGAGAGATTGAATTC 58.804 41.667 0.00 0.00 0.00 2.17
94 95 5.195940 GGAATGTGGGAGAGATTGAATTCA 58.804 41.667 3.38 3.38 0.00 2.57
95 96 5.832060 GGAATGTGGGAGAGATTGAATTCAT 59.168 40.000 9.40 0.00 0.00 2.57
96 97 6.016443 GGAATGTGGGAGAGATTGAATTCATC 60.016 42.308 9.40 9.05 0.00 2.92
97 98 4.445453 TGTGGGAGAGATTGAATTCATCG 58.555 43.478 9.40 0.00 0.00 3.84
98 99 4.162131 TGTGGGAGAGATTGAATTCATCGA 59.838 41.667 9.40 0.00 0.00 3.59
99 100 5.118990 GTGGGAGAGATTGAATTCATCGAA 58.881 41.667 9.40 0.00 0.00 3.71
100 101 5.007136 GTGGGAGAGATTGAATTCATCGAAC 59.993 44.000 9.40 2.13 0.00 3.95
101 102 5.118990 GGGAGAGATTGAATTCATCGAACA 58.881 41.667 9.40 0.00 0.00 3.18
102 103 5.762218 GGGAGAGATTGAATTCATCGAACAT 59.238 40.000 9.40 0.00 0.00 2.71
103 104 6.931281 GGGAGAGATTGAATTCATCGAACATA 59.069 38.462 9.40 0.00 0.00 2.29
104 105 7.605691 GGGAGAGATTGAATTCATCGAACATAT 59.394 37.037 9.40 0.00 0.00 1.78
105 106 9.645059 GGAGAGATTGAATTCATCGAACATATA 57.355 33.333 9.40 0.00 0.00 0.86
112 113 9.830294 TTGAATTCATCGAACATATATCATTGC 57.170 29.630 9.40 0.00 0.00 3.56
113 114 8.453320 TGAATTCATCGAACATATATCATTGCC 58.547 33.333 3.38 0.00 0.00 4.52
114 115 6.741992 TTCATCGAACATATATCATTGCCC 57.258 37.500 0.00 0.00 0.00 5.36
115 116 6.053632 TCATCGAACATATATCATTGCCCT 57.946 37.500 0.00 0.00 0.00 5.19
116 117 7.181569 TCATCGAACATATATCATTGCCCTA 57.818 36.000 0.00 0.00 0.00 3.53
117 118 7.795047 TCATCGAACATATATCATTGCCCTAT 58.205 34.615 0.00 0.00 0.00 2.57
118 119 8.267183 TCATCGAACATATATCATTGCCCTATT 58.733 33.333 0.00 0.00 0.00 1.73
119 120 9.546428 CATCGAACATATATCATTGCCCTATTA 57.454 33.333 0.00 0.00 0.00 0.98
125 126 9.745018 ACATATATCATTGCCCTATTATATGGC 57.255 33.333 10.91 10.91 45.56 4.40
126 127 9.970553 CATATATCATTGCCCTATTATATGGCT 57.029 33.333 17.10 2.30 45.56 4.75
128 129 8.701908 ATATCATTGCCCTATTATATGGCTTG 57.298 34.615 17.10 14.36 45.56 4.01
129 130 5.891198 TCATTGCCCTATTATATGGCTTGT 58.109 37.500 17.10 3.52 45.56 3.16
130 131 7.026697 TCATTGCCCTATTATATGGCTTGTA 57.973 36.000 17.10 3.84 45.56 2.41
131 132 7.465960 TCATTGCCCTATTATATGGCTTGTAA 58.534 34.615 17.10 5.97 45.56 2.41
132 133 7.611467 TCATTGCCCTATTATATGGCTTGTAAG 59.389 37.037 17.10 4.66 45.56 2.34
133 134 5.815581 TGCCCTATTATATGGCTTGTAAGG 58.184 41.667 17.10 0.00 45.56 2.69
134 135 5.193679 GCCCTATTATATGGCTTGTAAGGG 58.806 45.833 10.61 8.66 42.01 3.95
135 136 5.755849 CCCTATTATATGGCTTGTAAGGGG 58.244 45.833 12.42 12.42 0.00 4.79
136 137 5.491078 CCCTATTATATGGCTTGTAAGGGGA 59.509 44.000 17.32 0.00 31.56 4.81
137 138 6.011981 CCCTATTATATGGCTTGTAAGGGGAA 60.012 42.308 17.32 0.00 31.56 3.97
138 139 6.884836 CCTATTATATGGCTTGTAAGGGGAAC 59.115 42.308 0.00 0.00 0.00 3.62
139 140 2.702592 TATGGCTTGTAAGGGGAACG 57.297 50.000 0.00 0.00 0.00 3.95
140 141 0.988832 ATGGCTTGTAAGGGGAACGA 59.011 50.000 0.00 0.00 0.00 3.85
141 142 0.988832 TGGCTTGTAAGGGGAACGAT 59.011 50.000 0.00 0.00 0.00 3.73
142 143 1.065709 TGGCTTGTAAGGGGAACGATC 60.066 52.381 0.00 0.00 0.00 3.69
143 144 1.287425 GCTTGTAAGGGGAACGATCG 58.713 55.000 14.88 14.88 0.00 3.69
144 145 1.935933 CTTGTAAGGGGAACGATCGG 58.064 55.000 20.98 1.23 0.00 4.18
145 146 0.538118 TTGTAAGGGGAACGATCGGG 59.462 55.000 20.98 0.00 0.00 5.14
146 147 1.332144 TGTAAGGGGAACGATCGGGG 61.332 60.000 20.98 0.00 0.00 5.73
147 148 1.044790 GTAAGGGGAACGATCGGGGA 61.045 60.000 20.98 0.00 0.00 4.81
148 149 0.757935 TAAGGGGAACGATCGGGGAG 60.758 60.000 20.98 0.00 0.00 4.30
149 150 4.237207 GGGGAACGATCGGGGAGC 62.237 72.222 20.98 3.35 0.00 4.70
150 151 3.155167 GGGAACGATCGGGGAGCT 61.155 66.667 20.98 0.00 0.00 4.09
151 152 2.107141 GGAACGATCGGGGAGCTG 59.893 66.667 20.98 0.00 0.00 4.24
152 153 2.586357 GAACGATCGGGGAGCTGC 60.586 66.667 20.98 0.00 0.00 5.25
153 154 3.371097 GAACGATCGGGGAGCTGCA 62.371 63.158 20.98 0.00 0.00 4.41
154 155 3.665675 AACGATCGGGGAGCTGCAC 62.666 63.158 20.98 1.05 0.00 4.57
163 164 3.050275 GAGCTGCACCGGTCAACC 61.050 66.667 2.59 0.47 0.00 3.77
178 179 3.071892 GGTCAACCGGGATTCCACATATA 59.928 47.826 6.32 0.00 0.00 0.86
186 187 5.803020 GGGATTCCACATATAAGAATCGC 57.197 43.478 16.15 16.15 46.11 4.58
187 188 4.636206 GGGATTCCACATATAAGAATCGCC 59.364 45.833 18.35 14.11 46.28 5.54
188 189 5.245531 GGATTCCACATATAAGAATCGCCA 58.754 41.667 0.00 0.00 44.41 5.69
192 193 5.482006 TCCACATATAAGAATCGCCATGAG 58.518 41.667 0.00 0.00 0.00 2.90
199 200 6.656632 ATAAGAATCGCCATGAGAACTCTA 57.343 37.500 0.00 0.00 0.00 2.43
203 204 1.063942 TCGCCATGAGAACTCTAGGGA 60.064 52.381 0.00 7.93 0.00 4.20
206 207 3.737850 GCCATGAGAACTCTAGGGATTG 58.262 50.000 0.00 0.00 0.00 2.67
207 208 3.737850 CCATGAGAACTCTAGGGATTGC 58.262 50.000 0.00 0.00 0.00 3.56
211 212 4.219115 TGAGAACTCTAGGGATTGCCTAG 58.781 47.826 21.86 21.86 38.74 3.02
229 230 4.347453 ACGGCCACACGTACGTCC 62.347 66.667 19.94 15.61 46.58 4.79
231 232 2.263540 GGCCACACGTACGTCCAT 59.736 61.111 19.94 4.04 0.00 3.41
262 263 3.002759 GTGGAGCAAGTCAAGTGAGAAAC 59.997 47.826 0.00 0.00 0.00 2.78
263 264 2.550180 GGAGCAAGTCAAGTGAGAAACC 59.450 50.000 0.00 0.00 0.00 3.27
265 266 3.620488 AGCAAGTCAAGTGAGAAACCAA 58.380 40.909 0.00 0.00 0.00 3.67
266 267 4.210331 AGCAAGTCAAGTGAGAAACCAAT 58.790 39.130 0.00 0.00 0.00 3.16
268 269 4.794003 GCAAGTCAAGTGAGAAACCAATGG 60.794 45.833 0.00 0.00 0.00 3.16
269 270 2.887152 AGTCAAGTGAGAAACCAATGGC 59.113 45.455 0.00 0.00 0.00 4.40
272 273 3.703556 TCAAGTGAGAAACCAATGGCAAA 59.296 39.130 0.00 0.00 0.00 3.68
276 277 5.683681 AGTGAGAAACCAATGGCAAATTTT 58.316 33.333 0.00 0.00 0.00 1.82
277 278 5.759763 AGTGAGAAACCAATGGCAAATTTTC 59.240 36.000 0.00 1.51 0.00 2.29
301 302 3.374058 CACGAGGAAAATGCTTATCGGTT 59.626 43.478 0.00 0.00 34.63 4.44
303 304 3.621268 CGAGGAAAATGCTTATCGGTTCA 59.379 43.478 0.00 0.00 0.00 3.18
306 307 4.044426 GGAAAATGCTTATCGGTTCATGC 58.956 43.478 0.00 0.00 0.00 4.06
308 309 4.558538 AAATGCTTATCGGTTCATGCTC 57.441 40.909 0.00 0.00 0.00 4.26
325 326 0.531532 CTCCGATCACCCATCAGTGC 60.532 60.000 0.00 0.00 37.68 4.40
332 333 1.918293 ACCCATCAGTGCCCTCGAA 60.918 57.895 0.00 0.00 0.00 3.71
355 356 5.832539 AGAGGGAAAGAGATGACTTCAAA 57.167 39.130 0.00 0.00 0.00 2.69
356 357 6.192970 AGAGGGAAAGAGATGACTTCAAAA 57.807 37.500 0.00 0.00 0.00 2.44
366 367 3.980646 TGACTTCAAAAACCGGATGTG 57.019 42.857 9.46 1.45 0.00 3.21
370 371 2.649531 TCAAAAACCGGATGTGGACT 57.350 45.000 9.46 0.00 0.00 3.85
374 375 4.019681 TCAAAAACCGGATGTGGACTATCT 60.020 41.667 9.46 0.00 0.00 1.98
376 377 0.753262 ACCGGATGTGGACTATCTGC 59.247 55.000 9.46 0.00 31.08 4.26
380 381 1.346068 GGATGTGGACTATCTGCTCCC 59.654 57.143 0.00 0.00 0.00 4.30
394 395 0.455005 GCTCCCAAGCTCAAATGCTC 59.545 55.000 0.00 0.00 45.55 4.26
406 407 4.142227 GCTCAAATGCTCTTGGATGAACAT 60.142 41.667 0.00 0.00 0.00 2.71
408 409 6.405065 GCTCAAATGCTCTTGGATGAACATTA 60.405 38.462 0.00 0.00 33.31 1.90
412 413 8.437742 CAAATGCTCTTGGATGAACATTAAAAC 58.562 33.333 0.00 0.00 33.31 2.43
467 474 5.106396 TGTGGCAAACTTTGAAAAATGGTTG 60.106 36.000 5.65 0.00 0.00 3.77
472 479 6.092807 GCAAACTTTGAAAAATGGTTGGTGTA 59.907 34.615 5.65 0.00 0.00 2.90
490 497 8.487176 GTTGGTGTACTTGCAAAAATTTATCAG 58.513 33.333 0.00 0.00 0.00 2.90
498 505 9.211485 ACTTGCAAAAATTTATCAGGAAATGAG 57.789 29.630 0.00 0.00 42.53 2.90
571 586 3.957383 TTTTTCTTGCCGCCACTTC 57.043 47.368 0.00 0.00 0.00 3.01
576 591 1.080093 CTTGCCGCCACTTCTACGA 60.080 57.895 0.00 0.00 0.00 3.43
577 592 1.078759 CTTGCCGCCACTTCTACGAG 61.079 60.000 0.00 0.00 0.00 4.18
595 610 5.947228 ACGAGTGTTGTTTCATGATGAAT 57.053 34.783 8.90 0.00 36.11 2.57
600 615 7.641411 CGAGTGTTGTTTCATGATGAATATTCC 59.359 37.037 8.90 0.00 36.11 3.01
609 624 7.959658 TCATGATGAATATTCCCAAACACTT 57.040 32.000 12.90 0.00 0.00 3.16
622 637 7.835634 TCCCAAACACTTAAAACATTTGTTC 57.164 32.000 0.00 0.00 37.25 3.18
625 640 7.063544 CCCAAACACTTAAAACATTTGTTCGAA 59.936 33.333 0.00 0.00 37.25 3.71
631 646 8.643752 CACTTAAAACATTTGTTCGAAGTTTGT 58.356 29.630 11.73 5.48 39.12 2.83
632 647 8.643752 ACTTAAAACATTTGTTCGAAGTTTGTG 58.356 29.630 11.73 5.03 38.56 3.33
633 648 8.744008 TTAAAACATTTGTTCGAAGTTTGTGA 57.256 26.923 11.73 1.29 37.25 3.58
634 649 7.644986 AAAACATTTGTTCGAAGTTTGTGAA 57.355 28.000 11.73 0.00 37.25 3.18
635 650 7.644986 AAACATTTGTTCGAAGTTTGTGAAA 57.355 28.000 10.57 0.00 37.25 2.69
636 651 7.644986 AACATTTGTTCGAAGTTTGTGAAAA 57.355 28.000 0.00 0.00 31.64 2.29
671 1926 2.637382 TCCTGGCTTGTACTGTTCATCA 59.363 45.455 0.00 0.00 0.00 3.07
683 1938 8.669946 TGTACTGTTCATCACAAACTGAAATA 57.330 30.769 0.00 0.00 33.87 1.40
684 1939 8.556194 TGTACTGTTCATCACAAACTGAAATAC 58.444 33.333 0.00 0.00 33.87 1.89
685 1940 7.807977 ACTGTTCATCACAAACTGAAATACT 57.192 32.000 0.00 0.00 33.87 2.12
686 1941 7.642669 ACTGTTCATCACAAACTGAAATACTG 58.357 34.615 0.00 0.00 33.87 2.74
687 1942 7.498900 ACTGTTCATCACAAACTGAAATACTGA 59.501 33.333 0.00 0.00 33.87 3.41
688 1943 8.219546 TGTTCATCACAAACTGAAATACTGAA 57.780 30.769 0.00 0.00 33.45 3.02
689 1944 8.681806 TGTTCATCACAAACTGAAATACTGAAA 58.318 29.630 0.00 0.00 33.45 2.69
690 1945 9.683069 GTTCATCACAAACTGAAATACTGAAAT 57.317 29.630 0.00 0.00 33.45 2.17
696 1951 7.864379 CACAAACTGAAATACTGAAATGAGCTT 59.136 33.333 0.00 0.00 0.00 3.74
697 1952 8.416329 ACAAACTGAAATACTGAAATGAGCTTT 58.584 29.630 0.00 0.00 0.00 3.51
698 1953 8.697067 CAAACTGAAATACTGAAATGAGCTTTG 58.303 33.333 0.00 0.00 0.00 2.77
719 1974 1.357991 GAGCAGAGGAGCAGTTTCGC 61.358 60.000 0.00 0.00 36.85 4.70
721 1976 2.097038 CAGAGGAGCAGTTTCGCCG 61.097 63.158 0.00 0.00 0.00 6.46
722 1977 3.491652 GAGGAGCAGTTTCGCCGC 61.492 66.667 0.00 0.00 0.00 6.53
723 1978 4.314440 AGGAGCAGTTTCGCCGCA 62.314 61.111 0.00 0.00 0.00 5.69
763 2161 3.381136 CATGGCCACCCAAACCCG 61.381 66.667 8.16 0.00 46.14 5.28
769 2167 3.666253 CACCCAAACCCGAACCGC 61.666 66.667 0.00 0.00 0.00 5.68
780 2178 3.112709 GAACCGCGTGCTCACTCC 61.113 66.667 4.92 0.00 0.00 3.85
782 2180 4.664677 ACCGCGTGCTCACTCCAC 62.665 66.667 4.92 0.00 0.00 4.02
789 2187 1.597854 TGCTCACTCCACGCCAAAG 60.598 57.895 0.00 0.00 0.00 2.77
808 2211 1.229145 CCACCCCAATTTCCCAGCA 60.229 57.895 0.00 0.00 0.00 4.41
826 2229 0.868406 CACGGAGCAAGAGGACAAAC 59.132 55.000 0.00 0.00 0.00 2.93
869 2272 2.181521 GTCGTCGGCACCAACCAAA 61.182 57.895 0.00 0.00 0.00 3.28
870 2273 1.890041 TCGTCGGCACCAACCAAAG 60.890 57.895 0.00 0.00 0.00 2.77
871 2274 2.335011 GTCGGCACCAACCAAAGC 59.665 61.111 0.00 0.00 0.00 3.51
872 2275 2.909965 TCGGCACCAACCAAAGCC 60.910 61.111 0.00 0.00 43.61 4.35
913 2318 3.720193 CGAGTCGTGTCGGGTCGT 61.720 66.667 3.82 0.00 36.26 4.34
951 2356 2.190841 ACCAAAAACCACGAGCCCG 61.191 57.895 0.00 0.00 42.50 6.13
953 2358 1.448922 CCAAAAACCACGAGCCCGAA 61.449 55.000 0.00 0.00 39.50 4.30
954 2359 0.382515 CAAAAACCACGAGCCCGAAA 59.617 50.000 0.00 0.00 39.50 3.46
1024 2439 4.090588 GCCAACCCACCCGATCGA 62.091 66.667 18.66 0.00 0.00 3.59
1039 2461 2.107151 ATCGACCGAGAGATCACGCG 62.107 60.000 3.53 3.53 0.00 6.01
1074 2497 1.226030 CGGAGACCCACGGAAACAAC 61.226 60.000 0.00 0.00 0.00 3.32
1079 2502 0.531311 ACCCACGGAAACAACTCGTC 60.531 55.000 0.00 0.00 34.73 4.20
1080 2503 0.249741 CCCACGGAAACAACTCGTCT 60.250 55.000 0.00 0.00 34.73 4.18
1176 2639 2.725008 CGCCTCTCCTCGTCATCC 59.275 66.667 0.00 0.00 0.00 3.51
1177 2640 2.121538 CGCCTCTCCTCGTCATCCA 61.122 63.158 0.00 0.00 0.00 3.41
1178 2641 1.439644 GCCTCTCCTCGTCATCCAC 59.560 63.158 0.00 0.00 0.00 4.02
1500 3017 2.883828 CGTGGAGGTGCTGGTCCTT 61.884 63.158 0.00 0.00 35.20 3.36
1686 3239 1.985116 GGAGCACGAGGAGGAGGTT 60.985 63.158 0.00 0.00 0.00 3.50
1878 3438 6.428159 TCCTGTTTCTTTCTCAAGATTGTAGC 59.572 38.462 0.00 0.00 38.89 3.58
1879 3439 6.228273 TGTTTCTTTCTCAAGATTGTAGCG 57.772 37.500 0.00 0.00 38.89 4.26
1881 3441 6.926826 TGTTTCTTTCTCAAGATTGTAGCGTA 59.073 34.615 0.00 0.00 38.89 4.42
1885 3445 7.768240 TCTTTCTCAAGATTGTAGCGTATACA 58.232 34.615 3.32 0.00 33.80 2.29
1886 3446 8.414003 TCTTTCTCAAGATTGTAGCGTATACAT 58.586 33.333 3.32 0.00 33.80 2.29
1887 3447 9.678941 CTTTCTCAAGATTGTAGCGTATACATA 57.321 33.333 3.32 0.00 30.57 2.29
1888 3448 9.678941 TTTCTCAAGATTGTAGCGTATACATAG 57.321 33.333 3.32 0.00 0.00 2.23
1889 3449 8.392372 TCTCAAGATTGTAGCGTATACATAGT 57.608 34.615 3.32 0.00 0.00 2.12
1890 3450 8.847196 TCTCAAGATTGTAGCGTATACATAGTT 58.153 33.333 3.32 0.00 0.00 2.24
1891 3451 9.464714 CTCAAGATTGTAGCGTATACATAGTTT 57.535 33.333 3.32 0.00 0.00 2.66
1892 3452 9.811995 TCAAGATTGTAGCGTATACATAGTTTT 57.188 29.630 3.32 0.00 0.00 2.43
1901 3461 8.236084 AGCGTATACATAGTTTTAAATAGCCG 57.764 34.615 3.32 0.00 0.00 5.52
1902 3462 7.330208 AGCGTATACATAGTTTTAAATAGCCGG 59.670 37.037 0.00 0.00 0.00 6.13
1903 3463 7.450627 CGTATACATAGTTTTAAATAGCCGGC 58.549 38.462 21.89 21.89 0.00 6.13
1904 3464 6.812879 ATACATAGTTTTAAATAGCCGGCC 57.187 37.500 26.15 5.07 0.00 6.13
1905 3465 3.562557 ACATAGTTTTAAATAGCCGGCCG 59.437 43.478 26.15 21.04 0.00 6.13
1906 3466 0.736636 AGTTTTAAATAGCCGGCCGC 59.263 50.000 26.15 16.01 37.98 6.53
1919 3479 3.379445 GCCGCTATAGCCCCGCTA 61.379 66.667 19.00 0.00 45.55 4.26
1929 3489 2.801077 AGCCCCGCTATAACTGTTTT 57.199 45.000 0.00 0.00 36.99 2.43
1930 3490 3.081710 AGCCCCGCTATAACTGTTTTT 57.918 42.857 0.00 0.00 36.99 1.94
1931 3491 4.224991 AGCCCCGCTATAACTGTTTTTA 57.775 40.909 0.00 0.00 36.99 1.52
1932 3492 4.591929 AGCCCCGCTATAACTGTTTTTAA 58.408 39.130 0.00 0.00 36.99 1.52
1933 3493 4.638865 AGCCCCGCTATAACTGTTTTTAAG 59.361 41.667 0.00 0.00 36.99 1.85
1934 3494 4.201980 GCCCCGCTATAACTGTTTTTAAGG 60.202 45.833 0.00 0.00 0.00 2.69
1935 3495 5.187687 CCCCGCTATAACTGTTTTTAAGGA 58.812 41.667 0.00 0.00 0.00 3.36
1936 3496 5.648960 CCCCGCTATAACTGTTTTTAAGGAA 59.351 40.000 0.00 0.00 0.00 3.36
1937 3497 6.320418 CCCCGCTATAACTGTTTTTAAGGAAT 59.680 38.462 0.00 0.00 0.00 3.01
1938 3498 7.193595 CCCGCTATAACTGTTTTTAAGGAATG 58.806 38.462 0.00 0.00 0.00 2.67
1939 3499 6.691388 CCGCTATAACTGTTTTTAAGGAATGC 59.309 38.462 0.00 0.00 0.00 3.56
1940 3500 6.691388 CGCTATAACTGTTTTTAAGGAATGCC 59.309 38.462 0.00 0.00 0.00 4.40
1941 3501 6.691388 GCTATAACTGTTTTTAAGGAATGCCG 59.309 38.462 0.00 0.00 39.96 5.69
1942 3502 3.297830 ACTGTTTTTAAGGAATGCCGC 57.702 42.857 0.00 0.00 39.96 6.53
1943 3503 2.890945 ACTGTTTTTAAGGAATGCCGCT 59.109 40.909 0.00 0.00 39.96 5.52
1944 3504 4.076394 ACTGTTTTTAAGGAATGCCGCTA 58.924 39.130 0.00 0.00 39.96 4.26
1945 3505 4.705023 ACTGTTTTTAAGGAATGCCGCTAT 59.295 37.500 0.00 0.00 39.96 2.97
1946 3506 5.883673 ACTGTTTTTAAGGAATGCCGCTATA 59.116 36.000 0.00 0.00 39.96 1.31
1947 3507 6.546034 ACTGTTTTTAAGGAATGCCGCTATAT 59.454 34.615 0.00 0.00 39.96 0.86
1948 3508 7.717875 ACTGTTTTTAAGGAATGCCGCTATATA 59.282 33.333 0.00 0.00 39.96 0.86
1949 3509 7.867752 TGTTTTTAAGGAATGCCGCTATATAC 58.132 34.615 0.00 0.00 39.96 1.47
1950 3510 7.499563 TGTTTTTAAGGAATGCCGCTATATACA 59.500 33.333 0.00 0.00 39.96 2.29
1951 3511 8.512138 GTTTTTAAGGAATGCCGCTATATACAT 58.488 33.333 0.00 0.00 39.96 2.29
1952 3512 9.727859 TTTTTAAGGAATGCCGCTATATACATA 57.272 29.630 0.00 0.00 39.96 2.29
1953 3513 8.712285 TTTAAGGAATGCCGCTATATACATAC 57.288 34.615 0.00 0.00 39.96 2.39
1954 3514 6.546428 AAGGAATGCCGCTATATACATACT 57.454 37.500 0.00 0.00 39.96 2.12
1955 3515 7.655521 AAGGAATGCCGCTATATACATACTA 57.344 36.000 0.00 0.00 39.96 1.82
1956 3516 7.841282 AGGAATGCCGCTATATACATACTAT 57.159 36.000 0.00 0.00 39.96 2.12
1957 3517 8.251383 AGGAATGCCGCTATATACATACTATT 57.749 34.615 0.00 0.00 39.96 1.73
1958 3518 8.705594 AGGAATGCCGCTATATACATACTATTT 58.294 33.333 0.00 0.00 39.96 1.40
1959 3519 9.976511 GGAATGCCGCTATATACATACTATTTA 57.023 33.333 0.00 0.00 0.00 1.40
1963 3523 8.340443 TGCCGCTATATACATACTATTTAGACG 58.660 37.037 0.00 0.00 0.00 4.18
1964 3524 7.323177 GCCGCTATATACATACTATTTAGACGC 59.677 40.741 0.00 0.00 0.00 5.19
1965 3525 8.557864 CCGCTATATACATACTATTTAGACGCT 58.442 37.037 0.00 0.00 0.00 5.07
1972 3532 7.098074 ACATACTATTTAGACGCTATAGCCC 57.902 40.000 19.00 10.96 37.91 5.19
1973 3533 4.698583 ACTATTTAGACGCTATAGCCCG 57.301 45.455 19.00 8.53 37.91 6.13
1974 3534 2.365408 ATTTAGACGCTATAGCCCGC 57.635 50.000 19.00 8.40 37.91 6.13
1975 3535 1.325355 TTTAGACGCTATAGCCCGCT 58.675 50.000 19.00 14.81 37.91 5.52
1976 3536 2.189594 TTAGACGCTATAGCCCGCTA 57.810 50.000 19.00 13.88 37.91 4.26
1977 3537 2.414994 TAGACGCTATAGCCCGCTAT 57.585 50.000 19.00 13.46 41.58 2.97
1978 3538 1.546961 AGACGCTATAGCCCGCTATT 58.453 50.000 19.00 0.00 39.65 1.73
1979 3539 1.893801 AGACGCTATAGCCCGCTATTT 59.106 47.619 19.00 0.00 39.65 1.40
1980 3540 3.087031 AGACGCTATAGCCCGCTATTTA 58.913 45.455 19.00 0.00 39.65 1.40
1981 3541 3.508793 AGACGCTATAGCCCGCTATTTAA 59.491 43.478 19.00 0.00 39.65 1.52
1982 3542 4.021719 AGACGCTATAGCCCGCTATTTAAA 60.022 41.667 19.00 0.00 39.65 1.52
1983 3543 4.634199 ACGCTATAGCCCGCTATTTAAAA 58.366 39.130 19.00 0.00 39.65 1.52
1984 3544 4.450080 ACGCTATAGCCCGCTATTTAAAAC 59.550 41.667 19.00 0.00 39.65 2.43
1985 3545 4.449743 CGCTATAGCCCGCTATTTAAAACA 59.550 41.667 19.00 0.00 39.65 2.83
1986 3546 5.121768 CGCTATAGCCCGCTATTTAAAACAT 59.878 40.000 19.00 0.00 39.65 2.71
1987 3547 6.348213 CGCTATAGCCCGCTATTTAAAACATT 60.348 38.462 19.00 0.00 39.65 2.71
1988 3548 7.148540 CGCTATAGCCCGCTATTTAAAACATTA 60.149 37.037 19.00 0.00 39.65 1.90
1989 3549 8.508875 GCTATAGCCCGCTATTTAAAACATTAA 58.491 33.333 14.13 0.00 39.65 1.40
2020 3580 4.277258 ACGTACTGTATAGACGCAAATCG 58.723 43.478 9.96 0.00 40.19 3.34
2115 4128 1.289160 AGCTTGCTGGGTCCTTATCA 58.711 50.000 0.00 0.00 0.00 2.15
2119 4132 3.420893 CTTGCTGGGTCCTTATCAACAA 58.579 45.455 0.00 0.00 0.00 2.83
2127 4140 4.192317 GGTCCTTATCAACAAGGTAGCAG 58.808 47.826 2.04 0.00 44.68 4.24
2129 4142 4.870991 GTCCTTATCAACAAGGTAGCAGAC 59.129 45.833 2.04 0.00 44.68 3.51
2131 4144 5.189736 TCCTTATCAACAAGGTAGCAGACAT 59.810 40.000 2.04 0.00 44.68 3.06
2133 4146 4.558226 ATCAACAAGGTAGCAGACATGA 57.442 40.909 0.00 0.00 0.00 3.07
2134 4147 3.930336 TCAACAAGGTAGCAGACATGAG 58.070 45.455 0.00 0.00 0.00 2.90
2137 4150 2.238144 ACAAGGTAGCAGACATGAGCAT 59.762 45.455 0.00 0.00 0.00 3.79
2144 4234 5.236047 GGTAGCAGACATGAGCATTAGAAAG 59.764 44.000 0.00 0.00 0.00 2.62
2178 4455 4.551702 AGCCTTGACCTTTTGTTTTTGT 57.448 36.364 0.00 0.00 0.00 2.83
2179 4456 4.905429 AGCCTTGACCTTTTGTTTTTGTT 58.095 34.783 0.00 0.00 0.00 2.83
2180 4457 5.312895 AGCCTTGACCTTTTGTTTTTGTTT 58.687 33.333 0.00 0.00 0.00 2.83
2181 4458 5.767665 AGCCTTGACCTTTTGTTTTTGTTTT 59.232 32.000 0.00 0.00 0.00 2.43
2182 4459 6.264292 AGCCTTGACCTTTTGTTTTTGTTTTT 59.736 30.769 0.00 0.00 0.00 1.94
2183 4460 6.362016 GCCTTGACCTTTTGTTTTTGTTTTTG 59.638 34.615 0.00 0.00 0.00 2.44
2225 4502 2.361119 CCTTGACCTAGCTACGCACATA 59.639 50.000 0.00 0.00 0.00 2.29
2226 4503 3.005897 CCTTGACCTAGCTACGCACATAT 59.994 47.826 0.00 0.00 0.00 1.78
2239 4546 2.808202 CGCACATATCTGAAAGGAGGGG 60.808 54.545 0.00 0.00 0.00 4.79
2266 4573 6.139679 TCTTTATCTGTTCCCACCATTCTT 57.860 37.500 0.00 0.00 0.00 2.52
2275 4582 4.286297 TCCCACCATTCTTACTTGACTG 57.714 45.455 0.00 0.00 0.00 3.51
2277 4584 3.560025 CCCACCATTCTTACTTGACTGCT 60.560 47.826 0.00 0.00 0.00 4.24
2294 4601 5.946377 TGACTGCTATCTGTCTGAAACTCTA 59.054 40.000 5.39 0.00 40.50 2.43
2295 4602 6.434340 TGACTGCTATCTGTCTGAAACTCTAA 59.566 38.462 5.39 0.00 40.50 2.10
2296 4603 7.039714 TGACTGCTATCTGTCTGAAACTCTAAA 60.040 37.037 5.39 0.00 40.50 1.85
2297 4604 7.671302 ACTGCTATCTGTCTGAAACTCTAAAA 58.329 34.615 0.00 0.00 0.00 1.52
2298 4605 7.600752 ACTGCTATCTGTCTGAAACTCTAAAAC 59.399 37.037 0.00 0.00 0.00 2.43
2299 4606 7.671302 TGCTATCTGTCTGAAACTCTAAAACT 58.329 34.615 0.00 0.00 0.00 2.66
2300 4607 7.815068 TGCTATCTGTCTGAAACTCTAAAACTC 59.185 37.037 0.00 0.00 0.00 3.01
2391 4698 6.594788 ACCACTACATGCTGAATTGAAAAT 57.405 33.333 0.00 0.00 0.00 1.82
2403 4710 7.031975 GCTGAATTGAAAATAACTCTCCTTGG 58.968 38.462 0.00 0.00 0.00 3.61
2473 4785 9.126151 TGGAACATTTGTTTGTTAGTGAATCTA 57.874 29.630 0.00 0.00 39.85 1.98
2481 4793 7.728148 TGTTTGTTAGTGAATCTACTACACCA 58.272 34.615 0.00 0.00 33.14 4.17
2525 4837 2.579787 GATCACGCAGTCCGGACG 60.580 66.667 28.26 22.66 41.61 4.79
2527 4839 3.338126 ATCACGCAGTCCGGACGTC 62.338 63.158 28.26 21.47 41.61 4.34
2535 4847 1.038280 AGTCCGGACGTCTTTTGTCT 58.962 50.000 28.26 4.27 36.58 3.41
2536 4848 1.411612 AGTCCGGACGTCTTTTGTCTT 59.588 47.619 28.26 3.70 36.58 3.01
2537 4849 1.791204 GTCCGGACGTCTTTTGTCTTC 59.209 52.381 20.85 0.00 36.58 2.87
2538 4850 0.782384 CCGGACGTCTTTTGTCTTCG 59.218 55.000 16.46 6.80 36.58 3.79
2539 4851 0.782384 CGGACGTCTTTTGTCTTCGG 59.218 55.000 16.46 0.00 36.58 4.30
2540 4852 1.601162 CGGACGTCTTTTGTCTTCGGA 60.601 52.381 16.46 0.00 36.58 4.55
2541 4853 2.685100 GGACGTCTTTTGTCTTCGGAT 58.315 47.619 16.46 0.00 36.58 4.18
2564 4876 0.878961 GCAGTCCGGACGTCTTTTGT 60.879 55.000 28.26 5.88 36.20 2.83
2604 4916 2.857748 GGAAGTGTTTTGCCTTCAAACG 59.142 45.455 0.00 0.00 41.48 3.60
2622 4934 2.464459 GCGGTCCTGCATCTTTCGG 61.464 63.158 0.00 0.00 34.15 4.30
2624 4936 0.174845 CGGTCCTGCATCTTTCGGTA 59.825 55.000 0.00 0.00 0.00 4.02
2666 4978 1.595794 TCTCGCAAACCGAAGACAAAC 59.404 47.619 0.00 0.00 46.81 2.93
2699 5011 2.181021 CGTCTGGACCGCTACCAC 59.819 66.667 0.00 0.00 33.57 4.16
2743 5055 1.762957 CACCGAACACCCATCTCCTAT 59.237 52.381 0.00 0.00 0.00 2.57
2762 5074 2.556287 CCCACACGCTTTTCTCGC 59.444 61.111 0.00 0.00 0.00 5.03
2764 5076 2.556287 CACACGCTTTTCTCGCCC 59.444 61.111 0.00 0.00 0.00 6.13
2765 5077 2.110213 ACACGCTTTTCTCGCCCA 59.890 55.556 0.00 0.00 0.00 5.36
2805 5117 2.014554 CGGACACGACCGTTCACTG 61.015 63.158 10.92 0.00 46.70 3.66
2811 5123 2.432628 GACCGTTCACTGGAGCCG 60.433 66.667 0.00 0.00 0.00 5.52
2812 5124 3.934391 GACCGTTCACTGGAGCCGG 62.934 68.421 0.00 0.00 42.05 6.13
2817 5129 0.392461 GTTCACTGGAGCCGGCATTA 60.392 55.000 31.54 12.95 0.00 1.90
2823 5135 2.715624 GAGCCGGCATTAAAGCGG 59.284 61.111 31.54 3.50 34.64 5.52
2824 5136 3.469754 GAGCCGGCATTAAAGCGGC 62.470 63.158 31.54 22.28 46.85 6.53
2825 5137 3.518068 GCCGGCATTAAAGCGGCT 61.518 61.111 24.80 0.00 44.76 5.52
2826 5138 2.715624 CCGGCATTAAAGCGGCTC 59.284 61.111 1.45 0.00 33.96 4.70
2827 5139 2.324477 CGGCATTAAAGCGGCTCG 59.676 61.111 1.45 0.00 34.64 5.03
2869 5181 1.493311 CTGCAAACGCGTTCTCTCC 59.507 57.895 26.77 12.00 0.00 3.71
2871 5183 2.308039 GCAAACGCGTTCTCTCCGT 61.308 57.895 26.77 4.32 36.68 4.69
2925 5237 1.225376 TTAAACCAGTGCGAGTGCCG 61.225 55.000 0.00 0.00 41.78 5.69
2976 5288 1.337823 ACGTTTATTCCTGCGCTGACT 60.338 47.619 16.65 5.77 0.00 3.41
2982 5294 3.200593 CCTGCGCTGACTGGCATC 61.201 66.667 16.65 0.00 38.69 3.91
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.530870 GGAACCGCCTCAGTAGCATC 60.531 60.000 0.00 0.00 0.00 3.91
1 2 1.522569 GGAACCGCCTCAGTAGCAT 59.477 57.895 0.00 0.00 0.00 3.79
2 3 2.656069 GGGAACCGCCTCAGTAGCA 61.656 63.158 0.00 0.00 40.86 3.49
3 4 2.187163 GGGAACCGCCTCAGTAGC 59.813 66.667 0.00 0.00 40.86 3.58
15 16 0.800631 CGACGCCTAAAAAGGGGAAC 59.199 55.000 14.66 7.62 43.67 3.62
16 17 0.397564 ACGACGCCTAAAAAGGGGAA 59.602 50.000 14.66 0.00 43.67 3.97
17 18 0.320946 CACGACGCCTAAAAAGGGGA 60.321 55.000 14.66 0.00 43.67 4.81
18 19 1.918868 GCACGACGCCTAAAAAGGGG 61.919 60.000 6.92 6.92 46.01 4.79
19 20 1.500396 GCACGACGCCTAAAAAGGG 59.500 57.895 0.00 0.00 32.94 3.95
20 21 1.131826 CGCACGACGCCTAAAAAGG 59.868 57.895 0.00 0.00 37.30 3.11
21 22 4.717917 CGCACGACGCCTAAAAAG 57.282 55.556 0.00 0.00 37.30 2.27
31 32 0.302288 TTTACAAGCACACGCACGAC 59.698 50.000 0.00 0.00 42.27 4.34
32 33 1.193650 GATTTACAAGCACACGCACGA 59.806 47.619 0.00 0.00 42.27 4.35
33 34 1.070242 TGATTTACAAGCACACGCACG 60.070 47.619 0.00 0.00 42.27 5.34
34 35 2.679355 TGATTTACAAGCACACGCAC 57.321 45.000 0.00 0.00 42.27 5.34
35 36 3.004210 ACAATGATTTACAAGCACACGCA 59.996 39.130 0.00 0.00 42.27 5.24
36 37 3.564511 ACAATGATTTACAAGCACACGC 58.435 40.909 0.00 0.00 38.99 5.34
37 38 5.283717 GCTTACAATGATTTACAAGCACACG 59.716 40.000 9.16 0.00 38.55 4.49
38 39 6.148948 TGCTTACAATGATTTACAAGCACAC 58.851 36.000 11.58 0.00 42.35 3.82
39 40 6.206438 TCTGCTTACAATGATTTACAAGCACA 59.794 34.615 11.58 2.84 42.35 4.57
40 41 6.611381 TCTGCTTACAATGATTTACAAGCAC 58.389 36.000 11.58 0.00 42.35 4.40
41 42 6.816134 TCTGCTTACAATGATTTACAAGCA 57.184 33.333 13.77 13.77 44.30 3.91
42 43 6.249260 CGTTCTGCTTACAATGATTTACAAGC 59.751 38.462 7.74 7.74 39.02 4.01
43 44 7.478667 GTCGTTCTGCTTACAATGATTTACAAG 59.521 37.037 0.00 0.00 0.00 3.16
44 45 7.172532 AGTCGTTCTGCTTACAATGATTTACAA 59.827 33.333 0.00 0.00 0.00 2.41
45 46 6.649141 AGTCGTTCTGCTTACAATGATTTACA 59.351 34.615 0.00 0.00 0.00 2.41
46 47 6.955963 CAGTCGTTCTGCTTACAATGATTTAC 59.044 38.462 0.00 0.00 37.36 2.01
47 48 6.092122 CCAGTCGTTCTGCTTACAATGATTTA 59.908 38.462 0.00 0.00 42.38 1.40
48 49 5.106555 CCAGTCGTTCTGCTTACAATGATTT 60.107 40.000 0.00 0.00 42.38 2.17
49 50 4.393062 CCAGTCGTTCTGCTTACAATGATT 59.607 41.667 0.00 0.00 42.38 2.57
50 51 3.935203 CCAGTCGTTCTGCTTACAATGAT 59.065 43.478 0.00 0.00 42.38 2.45
51 52 3.006430 TCCAGTCGTTCTGCTTACAATGA 59.994 43.478 0.00 0.00 42.38 2.57
52 53 3.325870 TCCAGTCGTTCTGCTTACAATG 58.674 45.455 5.20 0.00 42.38 2.82
53 54 3.678056 TCCAGTCGTTCTGCTTACAAT 57.322 42.857 5.20 0.00 42.38 2.71
54 55 3.462483 TTCCAGTCGTTCTGCTTACAA 57.538 42.857 5.20 0.00 42.38 2.41
55 56 3.244078 ACATTCCAGTCGTTCTGCTTACA 60.244 43.478 5.20 0.00 42.38 2.41
56 57 3.123621 CACATTCCAGTCGTTCTGCTTAC 59.876 47.826 5.20 0.00 42.38 2.34
57 58 3.325870 CACATTCCAGTCGTTCTGCTTA 58.674 45.455 5.20 0.00 42.38 3.09
58 59 2.146342 CACATTCCAGTCGTTCTGCTT 58.854 47.619 5.20 0.00 42.38 3.91
59 60 1.609061 CCACATTCCAGTCGTTCTGCT 60.609 52.381 5.20 0.00 42.38 4.24
60 61 0.798776 CCACATTCCAGTCGTTCTGC 59.201 55.000 5.20 0.00 42.38 4.26
61 62 1.001974 TCCCACATTCCAGTCGTTCTG 59.998 52.381 4.03 4.03 43.27 3.02
62 63 1.276421 CTCCCACATTCCAGTCGTTCT 59.724 52.381 0.00 0.00 0.00 3.01
63 64 1.275291 TCTCCCACATTCCAGTCGTTC 59.725 52.381 0.00 0.00 0.00 3.95
64 65 1.276421 CTCTCCCACATTCCAGTCGTT 59.724 52.381 0.00 0.00 0.00 3.85
65 66 0.898320 CTCTCCCACATTCCAGTCGT 59.102 55.000 0.00 0.00 0.00 4.34
66 67 1.186200 TCTCTCCCACATTCCAGTCG 58.814 55.000 0.00 0.00 0.00 4.18
67 68 3.198635 TCAATCTCTCCCACATTCCAGTC 59.801 47.826 0.00 0.00 0.00 3.51
68 69 3.184628 TCAATCTCTCCCACATTCCAGT 58.815 45.455 0.00 0.00 0.00 4.00
69 70 3.920231 TCAATCTCTCCCACATTCCAG 57.080 47.619 0.00 0.00 0.00 3.86
70 71 4.868172 ATTCAATCTCTCCCACATTCCA 57.132 40.909 0.00 0.00 0.00 3.53
71 72 5.195940 TGAATTCAATCTCTCCCACATTCC 58.804 41.667 5.45 0.00 0.00 3.01
72 73 6.293298 CGATGAATTCAATCTCTCCCACATTC 60.293 42.308 13.09 0.00 0.00 2.67
73 74 5.530171 CGATGAATTCAATCTCTCCCACATT 59.470 40.000 13.09 0.00 0.00 2.71
74 75 5.061853 CGATGAATTCAATCTCTCCCACAT 58.938 41.667 13.09 0.00 0.00 3.21
75 76 4.162131 TCGATGAATTCAATCTCTCCCACA 59.838 41.667 13.09 0.00 0.00 4.17
76 77 4.697514 TCGATGAATTCAATCTCTCCCAC 58.302 43.478 13.09 0.00 0.00 4.61
77 78 5.118990 GTTCGATGAATTCAATCTCTCCCA 58.881 41.667 13.09 0.00 0.00 4.37
78 79 5.118990 TGTTCGATGAATTCAATCTCTCCC 58.881 41.667 13.09 0.00 0.00 4.30
79 80 6.857777 ATGTTCGATGAATTCAATCTCTCC 57.142 37.500 13.09 0.00 0.00 3.71
86 87 9.830294 GCAATGATATATGTTCGATGAATTCAA 57.170 29.630 13.09 0.00 0.00 2.69
87 88 8.453320 GGCAATGATATATGTTCGATGAATTCA 58.547 33.333 11.26 11.26 0.00 2.57
88 89 7.912250 GGGCAATGATATATGTTCGATGAATTC 59.088 37.037 0.00 0.00 0.00 2.17
89 90 7.613022 AGGGCAATGATATATGTTCGATGAATT 59.387 33.333 0.00 0.00 0.00 2.17
90 91 7.114754 AGGGCAATGATATATGTTCGATGAAT 58.885 34.615 0.00 0.00 0.00 2.57
91 92 6.475504 AGGGCAATGATATATGTTCGATGAA 58.524 36.000 0.00 0.00 0.00 2.57
92 93 6.053632 AGGGCAATGATATATGTTCGATGA 57.946 37.500 0.00 0.00 0.00 2.92
93 94 8.442632 AATAGGGCAATGATATATGTTCGATG 57.557 34.615 0.00 0.00 0.00 3.84
112 113 5.491078 TCCCCTTACAAGCCATATAATAGGG 59.509 44.000 0.00 0.00 39.59 3.53
113 114 6.636454 TCCCCTTACAAGCCATATAATAGG 57.364 41.667 0.00 0.00 0.00 2.57
114 115 6.594159 CGTTCCCCTTACAAGCCATATAATAG 59.406 42.308 0.00 0.00 0.00 1.73
115 116 6.270463 TCGTTCCCCTTACAAGCCATATAATA 59.730 38.462 0.00 0.00 0.00 0.98
116 117 5.072600 TCGTTCCCCTTACAAGCCATATAAT 59.927 40.000 0.00 0.00 0.00 1.28
117 118 4.409574 TCGTTCCCCTTACAAGCCATATAA 59.590 41.667 0.00 0.00 0.00 0.98
118 119 3.968649 TCGTTCCCCTTACAAGCCATATA 59.031 43.478 0.00 0.00 0.00 0.86
119 120 2.775384 TCGTTCCCCTTACAAGCCATAT 59.225 45.455 0.00 0.00 0.00 1.78
120 121 2.189676 TCGTTCCCCTTACAAGCCATA 58.810 47.619 0.00 0.00 0.00 2.74
121 122 0.988832 TCGTTCCCCTTACAAGCCAT 59.011 50.000 0.00 0.00 0.00 4.40
122 123 0.988832 ATCGTTCCCCTTACAAGCCA 59.011 50.000 0.00 0.00 0.00 4.75
123 124 1.664873 GATCGTTCCCCTTACAAGCC 58.335 55.000 0.00 0.00 0.00 4.35
124 125 1.287425 CGATCGTTCCCCTTACAAGC 58.713 55.000 7.03 0.00 0.00 4.01
125 126 1.472728 CCCGATCGTTCCCCTTACAAG 60.473 57.143 15.09 0.00 0.00 3.16
126 127 0.538118 CCCGATCGTTCCCCTTACAA 59.462 55.000 15.09 0.00 0.00 2.41
127 128 1.332144 CCCCGATCGTTCCCCTTACA 61.332 60.000 15.09 0.00 0.00 2.41
128 129 1.044790 TCCCCGATCGTTCCCCTTAC 61.045 60.000 15.09 0.00 0.00 2.34
129 130 0.757935 CTCCCCGATCGTTCCCCTTA 60.758 60.000 15.09 0.00 0.00 2.69
130 131 2.039951 TCCCCGATCGTTCCCCTT 59.960 61.111 15.09 0.00 0.00 3.95
131 132 2.444140 CTCCCCGATCGTTCCCCT 60.444 66.667 15.09 0.00 0.00 4.79
132 133 4.237207 GCTCCCCGATCGTTCCCC 62.237 72.222 15.09 0.00 0.00 4.81
133 134 3.155167 AGCTCCCCGATCGTTCCC 61.155 66.667 15.09 0.00 0.00 3.97
134 135 2.107141 CAGCTCCCCGATCGTTCC 59.893 66.667 15.09 0.00 0.00 3.62
135 136 2.586357 GCAGCTCCCCGATCGTTC 60.586 66.667 15.09 0.00 0.00 3.95
136 137 3.390521 TGCAGCTCCCCGATCGTT 61.391 61.111 15.09 0.00 0.00 3.85
137 138 4.148825 GTGCAGCTCCCCGATCGT 62.149 66.667 15.09 0.00 0.00 3.73
138 139 4.899239 GGTGCAGCTCCCCGATCG 62.899 72.222 8.51 8.51 0.00 3.69
139 140 4.899239 CGGTGCAGCTCCCCGATC 62.899 72.222 14.92 0.00 44.41 3.69
144 145 4.329545 TTGACCGGTGCAGCTCCC 62.330 66.667 14.63 0.00 0.00 4.30
145 146 3.050275 GTTGACCGGTGCAGCTCC 61.050 66.667 14.63 3.13 0.00 4.70
146 147 3.050275 GGTTGACCGGTGCAGCTC 61.050 66.667 14.63 6.26 0.00 4.09
163 164 4.330074 GCGATTCTTATATGTGGAATCCCG 59.670 45.833 15.18 10.08 41.00 5.14
164 165 4.636206 GGCGATTCTTATATGTGGAATCCC 59.364 45.833 15.18 13.81 41.00 3.85
167 168 6.475504 TCATGGCGATTCTTATATGTGGAAT 58.524 36.000 0.00 0.00 33.13 3.01
170 171 5.482006 TCTCATGGCGATTCTTATATGTGG 58.518 41.667 0.00 0.00 0.00 4.17
178 179 3.902881 AGAGTTCTCATGGCGATTCTT 57.097 42.857 2.64 0.00 0.00 2.52
186 187 3.495806 GGCAATCCCTAGAGTTCTCATGG 60.496 52.174 2.64 3.92 0.00 3.66
187 188 3.390639 AGGCAATCCCTAGAGTTCTCATG 59.609 47.826 2.64 0.00 44.08 3.07
188 189 3.663198 AGGCAATCCCTAGAGTTCTCAT 58.337 45.455 2.64 0.00 44.08 2.90
207 208 1.138247 GTACGTGTGGCCGTCTAGG 59.862 63.158 0.00 0.00 42.00 3.02
211 212 2.802414 GACGTACGTGTGGCCGTC 60.802 66.667 28.16 4.50 42.00 4.79
216 217 1.447140 CCCATGGACGTACGTGTGG 60.447 63.158 28.16 26.56 0.00 4.17
229 230 2.141011 TTGCTCCACTCCACCCCATG 62.141 60.000 0.00 0.00 0.00 3.66
231 232 2.449518 TTGCTCCACTCCACCCCA 60.450 61.111 0.00 0.00 0.00 4.96
262 263 3.911868 TCGTGAGAAAATTTGCCATTGG 58.088 40.909 0.00 0.00 37.03 3.16
263 264 3.922240 CCTCGTGAGAAAATTTGCCATTG 59.078 43.478 0.00 0.00 41.32 2.82
265 266 3.420893 TCCTCGTGAGAAAATTTGCCAT 58.579 40.909 0.00 0.00 41.32 4.40
266 267 2.857483 TCCTCGTGAGAAAATTTGCCA 58.143 42.857 0.00 0.00 41.32 4.92
268 269 5.388786 GCATTTTCCTCGTGAGAAAATTTGC 60.389 40.000 16.83 16.15 41.32 3.68
269 270 5.922544 AGCATTTTCCTCGTGAGAAAATTTG 59.077 36.000 16.83 12.57 41.32 2.32
272 273 5.712152 AAGCATTTTCCTCGTGAGAAAAT 57.288 34.783 15.06 15.06 41.32 1.82
276 277 4.112634 CGATAAGCATTTTCCTCGTGAGA 58.887 43.478 0.00 0.00 39.12 3.27
277 278 3.246226 CCGATAAGCATTTTCCTCGTGAG 59.754 47.826 0.00 0.00 0.00 3.51
301 302 0.394192 GATGGGTGATCGGAGCATGA 59.606 55.000 0.00 0.00 0.00 3.07
303 304 0.395686 CTGATGGGTGATCGGAGCAT 59.604 55.000 0.00 0.00 39.59 3.79
306 307 0.531532 GCACTGATGGGTGATCGGAG 60.532 60.000 0.00 0.00 39.59 4.63
308 309 1.524621 GGCACTGATGGGTGATCGG 60.525 63.158 0.00 0.00 42.57 4.18
332 333 5.832539 TTGAAGTCATCTCTTTCCCTCTT 57.167 39.130 0.00 0.00 0.00 2.85
348 349 2.621526 GTCCACATCCGGTTTTTGAAGT 59.378 45.455 0.00 0.00 0.00 3.01
355 356 2.420129 GCAGATAGTCCACATCCGGTTT 60.420 50.000 0.00 0.00 0.00 3.27
356 357 1.139058 GCAGATAGTCCACATCCGGTT 59.861 52.381 0.00 0.00 0.00 4.44
376 377 2.125773 AGAGCATTTGAGCTTGGGAG 57.874 50.000 0.00 0.00 46.75 4.30
380 381 3.442625 TCATCCAAGAGCATTTGAGCTTG 59.557 43.478 0.00 0.00 46.75 4.01
394 395 8.885494 TTTCTTGGTTTTAATGTTCATCCAAG 57.115 30.769 16.98 16.98 46.51 3.61
442 449 5.006386 ACCATTTTTCAAAGTTTGCCACAA 58.994 33.333 10.90 0.00 0.00 3.33
456 463 4.688021 TGCAAGTACACCAACCATTTTTC 58.312 39.130 0.00 0.00 0.00 2.29
458 465 4.744795 TTGCAAGTACACCAACCATTTT 57.255 36.364 0.00 0.00 0.00 1.82
461 468 4.744795 TTTTTGCAAGTACACCAACCAT 57.255 36.364 0.00 0.00 0.00 3.55
467 474 7.375053 TCCTGATAAATTTTTGCAAGTACACC 58.625 34.615 0.00 0.00 0.00 4.16
472 479 9.211485 CTCATTTCCTGATAAATTTTTGCAAGT 57.789 29.630 0.00 0.00 32.10 3.16
514 529 2.307496 TTGACAAACATGGGGCATCT 57.693 45.000 0.00 0.00 0.00 2.90
558 573 1.078759 CTCGTAGAAGTGGCGGCAAG 61.079 60.000 15.50 0.00 34.09 4.01
564 579 2.150397 ACAACACTCGTAGAAGTGGC 57.850 50.000 8.72 0.00 39.02 5.01
571 586 6.466308 TTCATCATGAAACAACACTCGTAG 57.534 37.500 0.00 0.00 32.71 3.51
576 591 7.396907 TGGGAATATTCATCATGAAACAACACT 59.603 33.333 17.07 0.00 40.12 3.55
577 592 7.546358 TGGGAATATTCATCATGAAACAACAC 58.454 34.615 17.07 0.00 40.12 3.32
595 610 9.892130 AACAAATGTTTTAAGTGTTTGGGAATA 57.108 25.926 0.00 0.00 33.93 1.75
600 615 7.513190 TCGAACAAATGTTTTAAGTGTTTGG 57.487 32.000 0.00 0.00 38.56 3.28
609 624 8.744008 TTCACAAACTTCGAACAAATGTTTTA 57.256 26.923 9.10 0.00 38.56 1.52
671 1926 7.516198 AGCTCATTTCAGTATTTCAGTTTGT 57.484 32.000 0.00 0.00 0.00 2.83
696 1951 1.130054 AACTGCTCCTCTGCTCCCAA 61.130 55.000 0.00 0.00 0.00 4.12
697 1952 1.130054 AAACTGCTCCTCTGCTCCCA 61.130 55.000 0.00 0.00 0.00 4.37
698 1953 0.392327 GAAACTGCTCCTCTGCTCCC 60.392 60.000 0.00 0.00 0.00 4.30
744 2142 3.705289 GGTTTGGGTGGCCATGGC 61.705 66.667 29.47 29.47 41.06 4.40
745 2143 3.002583 GGGTTTGGGTGGCCATGG 61.003 66.667 9.72 7.63 0.00 3.66
746 2144 3.381136 CGGGTTTGGGTGGCCATG 61.381 66.667 9.72 0.00 0.00 3.66
747 2145 3.153629 TTCGGGTTTGGGTGGCCAT 62.154 57.895 9.72 0.00 0.00 4.40
748 2146 3.822035 TTCGGGTTTGGGTGGCCA 61.822 61.111 0.00 0.00 0.00 5.36
749 2147 3.299977 GTTCGGGTTTGGGTGGCC 61.300 66.667 0.00 0.00 0.00 5.36
750 2148 3.299977 GGTTCGGGTTTGGGTGGC 61.300 66.667 0.00 0.00 0.00 5.01
751 2149 2.981350 CGGTTCGGGTTTGGGTGG 60.981 66.667 0.00 0.00 0.00 4.61
752 2150 3.666253 GCGGTTCGGGTTTGGGTG 61.666 66.667 0.00 0.00 0.00 4.61
763 2161 3.112709 GGAGTGAGCACGCGGTTC 61.113 66.667 12.47 7.79 36.20 3.62
769 2167 4.662961 TGGCGTGGAGTGAGCACG 62.663 66.667 0.00 0.00 44.14 5.34
782 2180 2.110757 AAATTGGGGTGGCTTTGGCG 62.111 55.000 0.00 0.00 39.81 5.69
789 2187 2.659063 GCTGGGAAATTGGGGTGGC 61.659 63.158 0.00 0.00 0.00 5.01
808 2211 0.250338 GGTTTGTCCTCTTGCTCCGT 60.250 55.000 0.00 0.00 0.00 4.69
826 2229 1.082756 GCGCGCCTGATATTTTCGG 60.083 57.895 23.24 0.00 0.00 4.30
869 2272 4.058797 GTAGCACACGGTTTGGCT 57.941 55.556 0.00 0.25 36.22 4.75
951 2356 0.392595 GGGGTGAGATCGGTGGTTTC 60.393 60.000 0.00 0.00 0.00 2.78
953 2358 2.298661 GGGGGTGAGATCGGTGGTT 61.299 63.158 0.00 0.00 0.00 3.67
954 2359 2.687566 GGGGGTGAGATCGGTGGT 60.688 66.667 0.00 0.00 0.00 4.16
1021 2436 2.810012 CGCGTGATCTCTCGGTCGA 61.810 63.158 0.00 0.00 33.93 4.20
1023 2438 2.024871 CCGCGTGATCTCTCGGTC 59.975 66.667 16.10 0.00 37.33 4.79
1024 2439 4.194720 GCCGCGTGATCTCTCGGT 62.195 66.667 22.83 0.00 43.45 4.69
1057 2480 1.509703 GAGTTGTTTCCGTGGGTCTC 58.490 55.000 0.00 0.00 0.00 3.36
1143 2588 3.446570 CGGAGGTAGAACGCCCGT 61.447 66.667 0.00 0.00 35.83 5.28
1484 3001 3.160585 CAAGGACCAGCACCTCCA 58.839 61.111 0.00 0.00 36.67 3.86
1651 3192 2.087009 CCTTGAACTCGTCGCCGAC 61.087 63.158 7.29 7.29 38.40 4.79
1655 3208 1.372997 TGCTCCTTGAACTCGTCGC 60.373 57.895 0.00 0.00 0.00 5.19
1686 3239 2.813474 CGCATCGTTTCCGCCTCA 60.813 61.111 0.00 0.00 0.00 3.86
1878 3438 7.412237 GGCCGGCTATTTAAAACTATGTATACG 60.412 40.741 28.56 0.00 0.00 3.06
1879 3439 7.412237 CGGCCGGCTATTTAAAACTATGTATAC 60.412 40.741 28.56 0.19 0.00 1.47
1881 3441 5.410439 CGGCCGGCTATTTAAAACTATGTAT 59.590 40.000 28.56 0.00 0.00 2.29
1885 3445 2.551032 GCGGCCGGCTATTTAAAACTAT 59.449 45.455 29.38 0.00 39.11 2.12
1886 3446 1.941975 GCGGCCGGCTATTTAAAACTA 59.058 47.619 29.38 0.00 39.11 2.24
1887 3447 0.736636 GCGGCCGGCTATTTAAAACT 59.263 50.000 29.38 0.00 39.11 2.66
1888 3448 3.245443 GCGGCCGGCTATTTAAAAC 57.755 52.632 29.38 4.75 39.11 2.43
1902 3462 3.379445 TAGCGGGGCTATAGCGGC 61.379 66.667 18.30 19.38 43.26 6.53
1909 3469 3.918294 AAAACAGTTATAGCGGGGCTA 57.082 42.857 0.00 0.00 45.55 3.93
1910 3470 2.801077 AAAACAGTTATAGCGGGGCT 57.199 45.000 0.00 0.00 43.41 5.19
1911 3471 4.201980 CCTTAAAAACAGTTATAGCGGGGC 60.202 45.833 0.00 0.00 0.00 5.80
1912 3472 5.187687 TCCTTAAAAACAGTTATAGCGGGG 58.812 41.667 0.00 0.00 0.00 5.73
1913 3473 6.746745 TTCCTTAAAAACAGTTATAGCGGG 57.253 37.500 0.00 0.00 0.00 6.13
1914 3474 6.691388 GCATTCCTTAAAAACAGTTATAGCGG 59.309 38.462 0.00 0.00 0.00 5.52
1915 3475 6.691388 GGCATTCCTTAAAAACAGTTATAGCG 59.309 38.462 0.00 0.00 0.00 4.26
1916 3476 6.691388 CGGCATTCCTTAAAAACAGTTATAGC 59.309 38.462 0.00 0.00 0.00 2.97
1917 3477 6.691388 GCGGCATTCCTTAAAAACAGTTATAG 59.309 38.462 0.00 0.00 0.00 1.31
1918 3478 6.376018 AGCGGCATTCCTTAAAAACAGTTATA 59.624 34.615 1.45 0.00 0.00 0.98
1919 3479 5.185056 AGCGGCATTCCTTAAAAACAGTTAT 59.815 36.000 1.45 0.00 0.00 1.89
1920 3480 4.521256 AGCGGCATTCCTTAAAAACAGTTA 59.479 37.500 1.45 0.00 0.00 2.24
1921 3481 3.320826 AGCGGCATTCCTTAAAAACAGTT 59.679 39.130 1.45 0.00 0.00 3.16
1922 3482 2.890945 AGCGGCATTCCTTAAAAACAGT 59.109 40.909 1.45 0.00 0.00 3.55
1923 3483 3.575965 AGCGGCATTCCTTAAAAACAG 57.424 42.857 1.45 0.00 0.00 3.16
1924 3484 6.952773 ATATAGCGGCATTCCTTAAAAACA 57.047 33.333 1.45 0.00 0.00 2.83
1925 3485 7.867752 TGTATATAGCGGCATTCCTTAAAAAC 58.132 34.615 1.45 0.00 0.00 2.43
1926 3486 8.630054 ATGTATATAGCGGCATTCCTTAAAAA 57.370 30.769 1.45 0.00 0.00 1.94
1927 3487 9.158233 GTATGTATATAGCGGCATTCCTTAAAA 57.842 33.333 1.45 0.00 0.00 1.52
1928 3488 8.537016 AGTATGTATATAGCGGCATTCCTTAAA 58.463 33.333 1.45 0.00 0.00 1.52
1929 3489 8.074613 AGTATGTATATAGCGGCATTCCTTAA 57.925 34.615 1.45 0.00 0.00 1.85
1930 3490 7.655521 AGTATGTATATAGCGGCATTCCTTA 57.344 36.000 1.45 0.00 0.00 2.69
1931 3491 6.546428 AGTATGTATATAGCGGCATTCCTT 57.454 37.500 1.45 0.00 0.00 3.36
1932 3492 7.841282 ATAGTATGTATATAGCGGCATTCCT 57.159 36.000 1.45 0.00 0.00 3.36
1933 3493 8.888579 AAATAGTATGTATATAGCGGCATTCC 57.111 34.615 1.45 0.00 0.00 3.01
1937 3497 8.340443 CGTCTAAATAGTATGTATATAGCGGCA 58.660 37.037 1.45 0.00 0.00 5.69
1938 3498 7.323177 GCGTCTAAATAGTATGTATATAGCGGC 59.677 40.741 0.00 0.00 0.00 6.53
1939 3499 8.557864 AGCGTCTAAATAGTATGTATATAGCGG 58.442 37.037 0.00 0.00 0.00 5.52
1946 3506 8.848182 GGGCTATAGCGTCTAAATAGTATGTAT 58.152 37.037 18.30 0.00 43.26 2.29
1947 3507 7.011763 CGGGCTATAGCGTCTAAATAGTATGTA 59.988 40.741 18.30 0.00 43.26 2.29
1948 3508 6.183360 CGGGCTATAGCGTCTAAATAGTATGT 60.183 42.308 18.30 0.00 43.26 2.29
1949 3509 6.200100 CGGGCTATAGCGTCTAAATAGTATG 58.800 44.000 18.30 0.00 43.26 2.39
1950 3510 5.221009 GCGGGCTATAGCGTCTAAATAGTAT 60.221 44.000 18.30 0.00 43.26 2.12
1951 3511 4.095483 GCGGGCTATAGCGTCTAAATAGTA 59.905 45.833 18.30 0.00 43.26 1.82
1952 3512 3.119566 GCGGGCTATAGCGTCTAAATAGT 60.120 47.826 18.30 0.00 43.26 2.12
1953 3513 3.128938 AGCGGGCTATAGCGTCTAAATAG 59.871 47.826 18.30 3.30 43.26 1.73
1954 3514 3.087031 AGCGGGCTATAGCGTCTAAATA 58.913 45.455 18.30 0.00 43.26 1.40
1955 3515 1.893801 AGCGGGCTATAGCGTCTAAAT 59.106 47.619 18.30 0.00 43.26 1.40
1956 3516 1.325355 AGCGGGCTATAGCGTCTAAA 58.675 50.000 18.30 0.00 43.26 1.85
1957 3517 2.189594 TAGCGGGCTATAGCGTCTAA 57.810 50.000 18.30 1.37 43.26 2.10
1958 3518 2.414994 ATAGCGGGCTATAGCGTCTA 57.585 50.000 18.30 17.15 43.26 2.59
1959 3519 1.546961 AATAGCGGGCTATAGCGTCT 58.453 50.000 18.30 15.71 43.26 4.18
1960 3520 2.365408 AAATAGCGGGCTATAGCGTC 57.635 50.000 18.30 11.86 43.26 5.19
1961 3521 3.947910 TTAAATAGCGGGCTATAGCGT 57.052 42.857 18.30 5.79 43.26 5.07
1962 3522 4.449743 TGTTTTAAATAGCGGGCTATAGCG 59.550 41.667 18.30 6.94 43.26 4.26
1963 3523 5.934935 TGTTTTAAATAGCGGGCTATAGC 57.065 39.130 16.78 16.78 38.20 2.97
1966 3526 9.691362 CATTTAATGTTTTAAATAGCGGGCTAT 57.309 29.630 7.36 7.36 43.10 2.97
1967 3527 8.688151 ACATTTAATGTTTTAAATAGCGGGCTA 58.312 29.630 4.56 2.42 43.10 3.93
1968 3528 7.552459 ACATTTAATGTTTTAAATAGCGGGCT 58.448 30.769 4.56 0.00 43.10 5.19
1969 3529 7.764695 ACATTTAATGTTTTAAATAGCGGGC 57.235 32.000 4.56 0.00 43.10 6.13
1988 3548 9.979270 GCGTCTATACAGTACGTATATACATTT 57.021 33.333 13.22 0.00 41.27 2.32
1989 3549 9.154847 TGCGTCTATACAGTACGTATATACATT 57.845 33.333 13.22 1.88 41.27 2.71
1990 3550 8.707938 TGCGTCTATACAGTACGTATATACAT 57.292 34.615 13.22 0.00 41.27 2.29
1991 3551 8.532977 TTGCGTCTATACAGTACGTATATACA 57.467 34.615 13.22 13.16 41.27 2.29
2005 3565 5.883328 TGTTGATCGATTTGCGTCTATAC 57.117 39.130 0.00 0.00 41.80 1.47
2020 3580 5.675575 GCATCTGATGTCTTGGTTGTTGATC 60.676 44.000 18.19 0.00 0.00 2.92
2115 4128 2.038952 TGCTCATGTCTGCTACCTTGTT 59.961 45.455 0.00 0.00 0.00 2.83
2119 4132 3.963374 TCTAATGCTCATGTCTGCTACCT 59.037 43.478 0.00 0.00 0.00 3.08
2127 4140 5.122869 TGACTTGCTTTCTAATGCTCATGTC 59.877 40.000 0.00 0.00 0.00 3.06
2129 4142 5.556355 TGACTTGCTTTCTAATGCTCATG 57.444 39.130 2.77 0.00 0.00 3.07
2131 4144 5.247862 TGATGACTTGCTTTCTAATGCTCA 58.752 37.500 2.77 0.00 0.00 4.26
2133 4146 5.494724 TCTGATGACTTGCTTTCTAATGCT 58.505 37.500 2.77 0.00 0.00 3.79
2134 4147 5.808042 TCTGATGACTTGCTTTCTAATGC 57.192 39.130 0.00 0.00 0.00 3.56
2137 4150 4.697352 GGCTTCTGATGACTTGCTTTCTAA 59.303 41.667 0.00 0.00 0.00 2.10
2144 4234 2.161211 GTCAAGGCTTCTGATGACTTGC 59.839 50.000 26.15 19.40 39.21 4.01
2178 4455 8.760569 GCTTCCGATCTTATTCAAAAACAAAAA 58.239 29.630 0.00 0.00 0.00 1.94
2179 4456 7.383843 GGCTTCCGATCTTATTCAAAAACAAAA 59.616 33.333 0.00 0.00 0.00 2.44
2180 4457 6.866248 GGCTTCCGATCTTATTCAAAAACAAA 59.134 34.615 0.00 0.00 0.00 2.83
2181 4458 6.208599 AGGCTTCCGATCTTATTCAAAAACAA 59.791 34.615 0.00 0.00 0.00 2.83
2182 4459 5.710099 AGGCTTCCGATCTTATTCAAAAACA 59.290 36.000 0.00 0.00 0.00 2.83
2183 4460 6.196079 AGGCTTCCGATCTTATTCAAAAAC 57.804 37.500 0.00 0.00 0.00 2.43
2239 4546 3.202151 TGGTGGGAACAGATAAAGATCCC 59.798 47.826 2.15 2.15 45.54 3.85
2266 4573 6.209589 AGTTTCAGACAGATAGCAGTCAAGTA 59.790 38.462 6.29 0.00 37.23 2.24
2275 4582 8.032451 AGAGTTTTAGAGTTTCAGACAGATAGC 58.968 37.037 0.00 0.00 0.00 2.97
2309 4616 2.672996 GCTGTGGCATTGACCCGT 60.673 61.111 0.00 0.00 38.54 5.28
2391 4698 0.690762 GTGCCCACCAAGGAGAGTTA 59.309 55.000 0.00 0.00 41.22 2.24
2403 4710 4.069304 TGTTATAGTTGAACTGTGCCCAC 58.931 43.478 8.33 0.00 0.00 4.61
2473 4785 6.231211 CAGAAGGTTTGAGTATTGGTGTAGT 58.769 40.000 0.00 0.00 0.00 2.73
2475 4787 5.001232 GCAGAAGGTTTGAGTATTGGTGTA 58.999 41.667 0.00 0.00 0.00 2.90
2481 4793 3.335579 GGACGCAGAAGGTTTGAGTATT 58.664 45.455 0.00 0.00 0.00 1.89
2515 4827 1.137513 GACAAAAGACGTCCGGACTG 58.862 55.000 30.92 24.96 0.00 3.51
2516 4828 1.038280 AGACAAAAGACGTCCGGACT 58.962 50.000 30.92 18.49 33.70 3.85
2522 4834 3.121445 GTGATCCGAAGACAAAAGACGTC 59.879 47.826 7.70 7.70 0.00 4.34
2525 4837 2.159827 GCGTGATCCGAAGACAAAAGAC 60.160 50.000 7.64 0.00 39.56 3.01
2527 4839 1.798223 TGCGTGATCCGAAGACAAAAG 59.202 47.619 7.64 0.00 39.56 2.27
2538 4850 2.202756 GTCCGGACTGCGTGATCC 60.203 66.667 27.64 0.00 0.00 3.36
2539 4851 2.579787 CGTCCGGACTGCGTGATC 60.580 66.667 30.92 2.76 0.00 2.92
2540 4852 3.338126 GACGTCCGGACTGCGTGAT 62.338 63.158 30.92 9.24 39.06 3.06
2541 4853 4.034258 GACGTCCGGACTGCGTGA 62.034 66.667 30.92 0.00 39.06 4.35
2564 4876 1.657751 CGGACTGCGTGATCCAGAGA 61.658 60.000 4.68 0.00 34.35 3.10
2604 4916 2.464459 CCGAAAGATGCAGGACCGC 61.464 63.158 0.00 1.90 0.00 5.68
2633 4945 1.154654 GCGAGAAAAAGTGCGTCCG 60.155 57.895 0.00 0.00 0.00 4.79
2641 4953 3.242608 TGTCTTCGGTTTGCGAGAAAAAG 60.243 43.478 0.00 0.00 0.00 2.27
2666 4978 3.209097 CGCCCGCAAACCCCATAG 61.209 66.667 0.00 0.00 0.00 2.23
2692 5004 2.667199 AAACACGGGCGTGGTAGC 60.667 61.111 0.93 0.00 46.49 3.58
2699 5011 2.580589 CAAATTAGTCAAACACGGGCG 58.419 47.619 0.00 0.00 0.00 6.13
2743 5055 2.250939 CGAGAAAAGCGTGTGGGCA 61.251 57.895 0.00 0.00 34.64 5.36
2762 5074 1.361271 GCATGAATGCGGACATGGG 59.639 57.895 15.03 0.00 44.67 4.00
2789 5101 0.663568 CTCCAGTGAACGGTCGTGTC 60.664 60.000 0.00 0.00 0.00 3.67
2799 5111 0.326595 TTAATGCCGGCTCCAGTGAA 59.673 50.000 29.70 4.25 0.00 3.18
2805 5117 2.715624 CGCTTTAATGCCGGCTCC 59.284 61.111 29.70 6.71 0.00 4.70
2925 5237 0.311477 GGCGTCGGAGTAGATTCCTC 59.689 60.000 0.00 0.00 34.96 3.71
2950 5262 1.795872 CGCAGGAATAAACGTGTGACA 59.204 47.619 0.00 0.00 38.06 3.58
2951 5263 1.463528 GCGCAGGAATAAACGTGTGAC 60.464 52.381 0.30 0.00 38.06 3.67
2976 5288 1.071542 TCGAAGAGGTGTTTGATGCCA 59.928 47.619 0.00 0.00 0.00 4.92
2982 5294 1.202651 ACCCAGTCGAAGAGGTGTTTG 60.203 52.381 0.96 0.00 36.95 2.93


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.