Multiple sequence alignment - TraesCS5D01G520300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G520300 chr5D 100.000 3222 0 0 492 3713 541700489 541703710 0.000000e+00 5951
1 TraesCS5D01G520300 chr5D 93.786 1223 71 3 492 1709 541875162 541876384 0.000000e+00 1832
2 TraesCS5D01G520300 chr5D 84.176 1207 112 42 818 1956 541392987 541391792 0.000000e+00 1098
3 TraesCS5D01G520300 chr5D 87.283 920 73 20 818 1709 540806993 540806090 0.000000e+00 1011
4 TraesCS5D01G520300 chr5D 88.223 484 52 4 2297 2776 540804927 540804445 1.160000e-159 573
5 TraesCS5D01G520300 chr5D 87.942 481 55 3 2299 2776 541876981 541877461 6.960000e-157 564
6 TraesCS5D01G520300 chr5D 85.741 540 62 10 2243 2776 541391547 541391017 1.160000e-154 556
7 TraesCS5D01G520300 chr5D 100.000 68 0 0 1 68 541699998 541700065 3.890000e-25 126
8 TraesCS5D01G520300 chr5D 100.000 68 0 0 1 68 541874720 541874787 3.890000e-25 126
9 TraesCS5D01G520300 chr5B 90.164 915 68 4 797 1709 683595730 683596624 0.000000e+00 1171
10 TraesCS5D01G520300 chr5B 87.896 537 57 3 2243 2776 683597015 683597546 3.150000e-175 625
11 TraesCS5D01G520300 chr5B 83.410 217 31 5 3316 3530 596239720 596239933 2.930000e-46 196
12 TraesCS5D01G520300 chr5B 89.167 120 6 5 694 812 683595560 683595673 3.870000e-30 143
13 TraesCS5D01G520300 chr4A 83.055 897 74 24 863 1709 627499137 627498269 0.000000e+00 743
14 TraesCS5D01G520300 chr4A 90.116 516 40 7 1713 2224 627498229 627497721 0.000000e+00 660
15 TraesCS5D01G520300 chr4A 87.709 537 63 2 2243 2776 627497453 627496917 1.130000e-174 623
16 TraesCS5D01G520300 chr2D 92.172 396 26 3 2920 3314 84776343 84776734 4.190000e-154 555
17 TraesCS5D01G520300 chr1B 93.191 235 15 1 2922 3155 507858937 507859171 9.870000e-91 344
18 TraesCS5D01G520300 chr1B 76.942 399 62 20 3316 3694 534169415 534169803 2.260000e-47 200
19 TraesCS5D01G520300 chr7D 90.980 255 22 1 2922 3176 1689329 1689582 3.550000e-90 342
20 TraesCS5D01G520300 chr7D 83.539 243 32 7 3315 3553 3181099 3181337 1.740000e-53 220
21 TraesCS5D01G520300 chr7D 77.874 348 62 14 3352 3692 79358346 79358007 6.290000e-48 202
22 TraesCS5D01G520300 chr3B 83.895 267 39 4 3316 3580 828765572 828765836 6.160000e-63 252
23 TraesCS5D01G520300 chr3B 82.456 285 46 4 3316 3598 828419777 828419495 2.860000e-61 246
24 TraesCS5D01G520300 chr4D 86.134 238 23 6 3028 3265 486314693 486314466 7.960000e-62 248
25 TraesCS5D01G520300 chr4D 85.052 194 23 4 3072 3265 486302321 486302134 3.780000e-45 193
26 TraesCS5D01G520300 chr4D 91.304 115 9 1 2922 3036 486314843 486314730 4.970000e-34 156
27 TraesCS5D01G520300 chr3D 82.374 278 45 4 3309 3584 532266690 532266965 4.790000e-59 239
28 TraesCS5D01G520300 chr6D 93.168 161 10 1 3060 3220 34971099 34970940 6.200000e-58 235
29 TraesCS5D01G520300 chr6D 93.496 123 8 0 2922 3044 34971457 34971335 2.280000e-42 183
30 TraesCS5D01G520300 chr7B 84.577 201 24 7 3338 3535 7464904 7465100 3.780000e-45 193
31 TraesCS5D01G520300 chr7B 82.174 230 32 9 3310 3535 717056334 717056558 4.900000e-44 189


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G520300 chr5D 541699998 541703710 3712 False 3038.500000 5951 100.000000 1 3713 2 chr5D.!!$F1 3712
1 TraesCS5D01G520300 chr5D 541874720 541877461 2741 False 840.666667 1832 93.909333 1 2776 3 chr5D.!!$F2 2775
2 TraesCS5D01G520300 chr5D 541391017 541392987 1970 True 827.000000 1098 84.958500 818 2776 2 chr5D.!!$R2 1958
3 TraesCS5D01G520300 chr5D 540804445 540806993 2548 True 792.000000 1011 87.753000 818 2776 2 chr5D.!!$R1 1958
4 TraesCS5D01G520300 chr5B 683595560 683597546 1986 False 646.333333 1171 89.075667 694 2776 3 chr5B.!!$F2 2082
5 TraesCS5D01G520300 chr4A 627496917 627499137 2220 True 675.333333 743 86.960000 863 2776 3 chr4A.!!$R1 1913
6 TraesCS5D01G520300 chr6D 34970940 34971457 517 True 209.000000 235 93.332000 2922 3220 2 chr6D.!!$R1 298

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
696 697 0.034616 AGCAGAGGCACACACTTCTC 59.965 55.0 0.0 0.0 44.61 2.87 F
1208 1374 0.861837 GTGTTCCGCTTCAGTCAGTG 59.138 55.0 0.0 0.0 0.00 3.66 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1524 1691 0.249911 GACTTGTCTGTGGCTTCGGT 60.250 55.0 0.00 0.0 0.00 4.69 R
3046 3926 0.108329 GGATGGACCAACGTCGTCAT 60.108 55.0 15.32 0.0 40.17 3.06 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
696 697 0.034616 AGCAGAGGCACACACTTCTC 59.965 55.000 0.00 0.00 44.61 2.87
725 726 3.950397 TCCTTGTATTTTGTCGCCAGAT 58.050 40.909 0.00 0.00 0.00 2.90
786 788 2.208431 CCATCGCTCTGGAAGATGAAC 58.792 52.381 13.47 0.00 45.62 3.18
837 913 6.042777 CACAGTCTTGTATGTTACGATCCAT 58.957 40.000 0.00 0.00 35.25 3.41
885 962 4.036567 TGTTATTAGGATCCGACACGTG 57.963 45.455 15.48 15.48 0.00 4.49
1192 1358 2.600173 CCCATGCAAACCCGGTGT 60.600 61.111 0.00 0.00 0.00 4.16
1208 1374 0.861837 GTGTTCCGCTTCAGTCAGTG 59.138 55.000 0.00 0.00 0.00 3.66
1419 1585 3.456663 CGAATCACGGATCGTCGAT 57.543 52.632 7.63 7.63 38.32 3.59
1438 1605 2.031012 CGCTTCACCCAGACAGCA 59.969 61.111 0.00 0.00 33.05 4.41
1524 1691 1.296392 CCACGATGGCACCAAGAGA 59.704 57.895 0.00 0.00 0.00 3.10
1578 1745 3.248024 TGAGTGGGAGGTGATACTTGTT 58.752 45.455 0.00 0.00 0.00 2.83
1585 1752 4.868734 GGGAGGTGATACTTGTTAAAGACG 59.131 45.833 0.00 0.00 36.84 4.18
1595 1762 1.269726 TGTTAAAGACGACGACCCCAC 60.270 52.381 0.00 0.00 0.00 4.61
1656 1823 1.395954 GGATTGCTCGACCGTTTTACC 59.604 52.381 0.00 0.00 0.00 2.85
1676 1843 1.533338 CGATGCTGAGATTGCCTTTGC 60.533 52.381 0.00 0.00 38.26 3.68
1796 2029 0.107643 TTGGTCACATCGTTGCCAGA 59.892 50.000 0.00 0.00 0.00 3.86
1845 2078 3.443681 GTGGTCTCCAATACCCATGTTTG 59.556 47.826 0.00 0.00 34.18 2.93
1856 2089 2.365293 ACCCATGTTTGTGCCTTTCTTC 59.635 45.455 0.00 0.00 0.00 2.87
1879 2129 5.991328 CGAAGGTATGTATGACTGCAATT 57.009 39.130 0.00 0.00 0.00 2.32
1881 2131 7.658179 CGAAGGTATGTATGACTGCAATTAT 57.342 36.000 0.00 0.00 0.00 1.28
1882 2132 8.757164 CGAAGGTATGTATGACTGCAATTATA 57.243 34.615 0.00 0.00 0.00 0.98
1883 2133 9.371136 CGAAGGTATGTATGACTGCAATTATAT 57.629 33.333 0.00 0.00 0.00 0.86
1956 2217 7.992754 ATATGCCCAGAAATCATTTAGTCTC 57.007 36.000 0.00 0.00 0.00 3.36
1966 2227 6.963083 AATCATTTAGTCTCTAGGCTACGT 57.037 37.500 0.00 0.00 0.00 3.57
2129 2396 9.516314 GAATAACAAGGACAATAGGCAATTAAC 57.484 33.333 0.00 0.00 0.00 2.01
2134 2401 5.193679 AGGACAATAGGCAATTAACAGGTC 58.806 41.667 0.00 0.00 0.00 3.85
2207 2559 2.449031 ATTGCCACCTCGCGAGTGAA 62.449 55.000 32.41 20.27 0.00 3.18
2213 2565 2.651361 CTCGCGAGTGAACTGGGT 59.349 61.111 27.79 0.00 0.00 4.51
2230 2820 3.845259 TACCCACCGCGATGCCTC 61.845 66.667 8.23 0.00 0.00 4.70
2234 2824 3.197790 CACCGCGATGCCTCCTTG 61.198 66.667 8.23 0.00 0.00 3.61
2237 2827 2.821366 CGCGATGCCTCCTTGCTT 60.821 61.111 0.00 0.00 0.00 3.91
2239 2829 2.768492 GCGATGCCTCCTTGCTTGG 61.768 63.158 0.00 0.00 0.00 3.61
2240 2830 2.768492 CGATGCCTCCTTGCTTGGC 61.768 63.158 0.00 0.00 46.26 4.52
2241 2831 2.363406 ATGCCTCCTTGCTTGGCC 60.363 61.111 0.00 0.00 45.56 5.36
2258 3128 2.299013 TGGCCGCTACAGTAGGATAATG 59.701 50.000 9.74 0.00 43.33 1.90
2304 3179 7.208777 TCTTAAAGTAACACCGTAACACATGA 58.791 34.615 0.00 0.00 0.00 3.07
2455 3330 1.405661 CCCTCTTGTACTTCCGGAAGC 60.406 57.143 38.22 25.45 41.99 3.86
2457 3332 2.611518 CTCTTGTACTTCCGGAAGCAG 58.388 52.381 38.22 27.93 41.99 4.24
2463 3338 0.618458 ACTTCCGGAAGCAGGCAATA 59.382 50.000 38.22 4.45 41.99 1.90
2474 3349 5.126061 GGAAGCAGGCAATAATTGAAAGAGA 59.874 40.000 0.00 0.00 0.00 3.10
2482 3360 5.122396 GCAATAATTGAAAGAGAGTCGGTGT 59.878 40.000 0.00 0.00 0.00 4.16
2492 3370 2.229062 GAGAGTCGGTGTCACAAGATCA 59.771 50.000 5.12 0.00 0.00 2.92
2498 3376 2.354103 CGGTGTCACAAGATCACATCCT 60.354 50.000 5.12 0.00 34.27 3.24
2500 3378 4.074970 GGTGTCACAAGATCACATCCTTT 58.925 43.478 5.12 0.00 34.27 3.11
2503 3381 6.206634 GGTGTCACAAGATCACATCCTTTTTA 59.793 38.462 5.12 0.00 34.27 1.52
2516 3394 9.396022 TCACATCCTTTTTAATCCTTCAGATAC 57.604 33.333 0.00 0.00 33.66 2.24
2517 3395 9.177608 CACATCCTTTTTAATCCTTCAGATACA 57.822 33.333 0.00 0.00 33.66 2.29
2525 3403 3.350219 TCCTTCAGATACAACAAGGGC 57.650 47.619 0.00 0.00 36.75 5.19
2526 3404 2.642311 TCCTTCAGATACAACAAGGGCA 59.358 45.455 0.00 0.00 36.75 5.36
2533 3411 0.602638 TACAACAAGGGCAGAGCGTG 60.603 55.000 0.00 0.00 0.00 5.34
2536 3414 2.031012 CAAGGGCAGAGCGTGTGA 59.969 61.111 0.00 0.00 0.00 3.58
2537 3415 1.376424 CAAGGGCAGAGCGTGTGAT 60.376 57.895 0.00 0.00 0.00 3.06
2538 3416 1.376424 AAGGGCAGAGCGTGTGATG 60.376 57.895 0.00 0.00 0.00 3.07
2554 3432 2.674357 GTGATGCAACCCAAAATCATGC 59.326 45.455 0.00 0.00 37.52 4.06
2608 3486 0.179161 CGACGAAGGTACCAGCTCAG 60.179 60.000 15.94 6.78 0.00 3.35
2657 3535 1.077663 ACAAACCCTGGGAGATGCATT 59.922 47.619 22.23 0.00 0.00 3.56
2659 3537 0.259938 AACCCTGGGAGATGCATTCC 59.740 55.000 22.23 15.57 0.00 3.01
2682 3560 5.980116 CCAACTTATATCGACAAGACTGAGG 59.020 44.000 9.53 2.11 0.00 3.86
2685 3563 2.941453 TATCGACAAGACTGAGGCAC 57.059 50.000 0.00 0.00 0.00 5.01
2756 3635 0.399454 ACAGCCACATCTTCAGCACT 59.601 50.000 0.00 0.00 0.00 4.40
2776 3656 5.334414 GCACTTTCCGATATGAATGGACATC 60.334 44.000 0.00 0.00 0.00 3.06
2777 3657 5.180117 CACTTTCCGATATGAATGGACATCC 59.820 44.000 0.00 0.00 0.00 3.51
2778 3658 3.981071 TCCGATATGAATGGACATCCC 57.019 47.619 0.00 0.00 34.29 3.85
2779 3659 3.520696 TCCGATATGAATGGACATCCCT 58.479 45.455 0.00 0.00 35.38 4.20
2780 3660 3.909995 TCCGATATGAATGGACATCCCTT 59.090 43.478 0.00 0.00 35.38 3.95
2781 3661 4.020218 TCCGATATGAATGGACATCCCTTC 60.020 45.833 8.55 8.55 39.94 3.46
2782 3662 4.256920 CGATATGAATGGACATCCCTTCC 58.743 47.826 11.92 0.00 39.12 3.46
2783 3663 4.019860 CGATATGAATGGACATCCCTTCCT 60.020 45.833 11.92 6.31 39.12 3.36
2784 3664 3.589951 ATGAATGGACATCCCTTCCTG 57.410 47.619 11.92 0.00 39.12 3.86
2785 3665 1.565759 TGAATGGACATCCCTTCCTGG 59.434 52.381 11.92 0.00 39.12 4.45
2786 3666 1.566231 GAATGGACATCCCTTCCTGGT 59.434 52.381 4.96 0.00 35.45 4.00
2787 3667 2.587060 ATGGACATCCCTTCCTGGTA 57.413 50.000 0.00 0.00 33.84 3.25
2788 3668 1.879575 TGGACATCCCTTCCTGGTAG 58.120 55.000 0.00 0.00 33.84 3.18
2789 3669 1.080498 TGGACATCCCTTCCTGGTAGT 59.920 52.381 0.00 0.00 33.84 2.73
2790 3670 2.197465 GGACATCCCTTCCTGGTAGTT 58.803 52.381 0.00 0.00 0.00 2.24
2791 3671 2.576648 GGACATCCCTTCCTGGTAGTTT 59.423 50.000 0.00 0.00 0.00 2.66
2792 3672 3.010250 GGACATCCCTTCCTGGTAGTTTT 59.990 47.826 0.00 0.00 0.00 2.43
2793 3673 4.508584 GGACATCCCTTCCTGGTAGTTTTT 60.509 45.833 0.00 0.00 0.00 1.94
2794 3674 4.407365 ACATCCCTTCCTGGTAGTTTTTG 58.593 43.478 0.00 0.00 0.00 2.44
2795 3675 4.105697 ACATCCCTTCCTGGTAGTTTTTGA 59.894 41.667 0.00 0.00 0.00 2.69
2796 3676 5.222337 ACATCCCTTCCTGGTAGTTTTTGAT 60.222 40.000 0.00 0.00 0.00 2.57
2797 3677 4.918588 TCCCTTCCTGGTAGTTTTTGATC 58.081 43.478 0.00 0.00 0.00 2.92
2798 3678 3.689649 CCCTTCCTGGTAGTTTTTGATCG 59.310 47.826 0.00 0.00 0.00 3.69
2799 3679 4.564821 CCCTTCCTGGTAGTTTTTGATCGA 60.565 45.833 0.00 0.00 0.00 3.59
2800 3680 5.186198 CCTTCCTGGTAGTTTTTGATCGAT 58.814 41.667 0.00 0.00 0.00 3.59
2801 3681 5.648092 CCTTCCTGGTAGTTTTTGATCGATT 59.352 40.000 0.00 0.00 0.00 3.34
2802 3682 6.183360 CCTTCCTGGTAGTTTTTGATCGATTC 60.183 42.308 0.00 0.00 0.00 2.52
2803 3683 5.183228 TCCTGGTAGTTTTTGATCGATTCC 58.817 41.667 0.00 0.00 0.00 3.01
2804 3684 4.034048 CCTGGTAGTTTTTGATCGATTCCG 59.966 45.833 0.00 0.00 37.07 4.30
2805 3685 4.571919 TGGTAGTTTTTGATCGATTCCGT 58.428 39.130 0.00 0.00 37.05 4.69
2806 3686 4.390603 TGGTAGTTTTTGATCGATTCCGTG 59.609 41.667 0.00 0.00 37.05 4.94
2807 3687 4.390909 GGTAGTTTTTGATCGATTCCGTGT 59.609 41.667 0.00 0.00 37.05 4.49
2808 3688 5.577945 GGTAGTTTTTGATCGATTCCGTGTA 59.422 40.000 0.00 0.00 37.05 2.90
2809 3689 6.257193 GGTAGTTTTTGATCGATTCCGTGTAT 59.743 38.462 0.00 0.00 37.05 2.29
2810 3690 6.737254 AGTTTTTGATCGATTCCGTGTATT 57.263 33.333 0.00 0.00 37.05 1.89
2811 3691 6.772078 AGTTTTTGATCGATTCCGTGTATTC 58.228 36.000 0.00 0.00 37.05 1.75
2812 3692 5.728351 TTTTGATCGATTCCGTGTATTCC 57.272 39.130 0.00 0.00 37.05 3.01
2813 3693 4.394439 TTGATCGATTCCGTGTATTCCA 57.606 40.909 0.00 0.00 37.05 3.53
2814 3694 3.713288 TGATCGATTCCGTGTATTCCAC 58.287 45.455 0.00 0.00 40.89 4.02
2815 3695 3.131400 TGATCGATTCCGTGTATTCCACA 59.869 43.478 0.00 0.00 44.78 4.17
2816 3696 3.812156 TCGATTCCGTGTATTCCACAT 57.188 42.857 0.00 0.00 44.78 3.21
2817 3697 4.922471 TCGATTCCGTGTATTCCACATA 57.078 40.909 0.00 0.00 44.78 2.29
2818 3698 5.462530 TCGATTCCGTGTATTCCACATAT 57.537 39.130 0.00 0.00 44.78 1.78
2819 3699 5.849510 TCGATTCCGTGTATTCCACATATT 58.150 37.500 0.00 0.00 44.78 1.28
2820 3700 5.924254 TCGATTCCGTGTATTCCACATATTC 59.076 40.000 0.00 0.00 44.78 1.75
2821 3701 5.694458 CGATTCCGTGTATTCCACATATTCA 59.306 40.000 0.00 0.00 44.78 2.57
2822 3702 6.201997 CGATTCCGTGTATTCCACATATTCAA 59.798 38.462 0.00 0.00 44.78 2.69
2823 3703 6.918892 TTCCGTGTATTCCACATATTCAAG 57.081 37.500 0.00 0.00 44.78 3.02
2824 3704 6.228616 TCCGTGTATTCCACATATTCAAGA 57.771 37.500 0.00 0.00 44.78 3.02
2825 3705 6.280643 TCCGTGTATTCCACATATTCAAGAG 58.719 40.000 0.00 0.00 44.78 2.85
2826 3706 6.049149 CCGTGTATTCCACATATTCAAGAGT 58.951 40.000 0.00 0.00 44.78 3.24
2827 3707 6.018751 CCGTGTATTCCACATATTCAAGAGTG 60.019 42.308 0.00 0.00 44.78 3.51
2834 3714 5.989477 CCACATATTCAAGAGTGGTTAGGA 58.011 41.667 0.00 0.00 44.95 2.94
2835 3715 6.051717 CCACATATTCAAGAGTGGTTAGGAG 58.948 44.000 0.00 0.00 44.95 3.69
2836 3716 6.127054 CCACATATTCAAGAGTGGTTAGGAGA 60.127 42.308 0.00 0.00 44.95 3.71
2837 3717 6.983307 CACATATTCAAGAGTGGTTAGGAGAG 59.017 42.308 0.00 0.00 0.00 3.20
2838 3718 6.670027 ACATATTCAAGAGTGGTTAGGAGAGT 59.330 38.462 0.00 0.00 0.00 3.24
2839 3719 7.181125 ACATATTCAAGAGTGGTTAGGAGAGTT 59.819 37.037 0.00 0.00 0.00 3.01
2840 3720 8.696374 CATATTCAAGAGTGGTTAGGAGAGTTA 58.304 37.037 0.00 0.00 0.00 2.24
2841 3721 6.591750 TTCAAGAGTGGTTAGGAGAGTTAG 57.408 41.667 0.00 0.00 0.00 2.34
2842 3722 5.642165 TCAAGAGTGGTTAGGAGAGTTAGT 58.358 41.667 0.00 0.00 0.00 2.24
2843 3723 6.075984 TCAAGAGTGGTTAGGAGAGTTAGTT 58.924 40.000 0.00 0.00 0.00 2.24
2844 3724 6.553852 TCAAGAGTGGTTAGGAGAGTTAGTTT 59.446 38.462 0.00 0.00 0.00 2.66
2845 3725 6.347859 AGAGTGGTTAGGAGAGTTAGTTTG 57.652 41.667 0.00 0.00 0.00 2.93
2846 3726 4.895961 AGTGGTTAGGAGAGTTAGTTTGC 58.104 43.478 0.00 0.00 0.00 3.68
2847 3727 4.001652 GTGGTTAGGAGAGTTAGTTTGCC 58.998 47.826 0.00 0.00 0.00 4.52
2848 3728 3.259902 GGTTAGGAGAGTTAGTTTGCCG 58.740 50.000 0.00 0.00 0.00 5.69
2849 3729 3.259902 GTTAGGAGAGTTAGTTTGCCGG 58.740 50.000 0.00 0.00 0.00 6.13
2850 3730 1.640917 AGGAGAGTTAGTTTGCCGGA 58.359 50.000 5.05 0.00 0.00 5.14
2851 3731 2.188817 AGGAGAGTTAGTTTGCCGGAT 58.811 47.619 5.05 0.00 0.00 4.18
2852 3732 2.093447 AGGAGAGTTAGTTTGCCGGATG 60.093 50.000 5.05 0.00 0.00 3.51
2853 3733 2.354805 GGAGAGTTAGTTTGCCGGATGT 60.355 50.000 5.05 0.00 0.00 3.06
2854 3734 2.673368 GAGAGTTAGTTTGCCGGATGTG 59.327 50.000 5.05 0.00 0.00 3.21
2855 3735 1.130561 GAGTTAGTTTGCCGGATGTGC 59.869 52.381 5.05 0.00 0.00 4.57
2856 3736 0.170339 GTTAGTTTGCCGGATGTGCC 59.830 55.000 5.05 0.00 0.00 5.01
2857 3737 0.250945 TTAGTTTGCCGGATGTGCCA 60.251 50.000 5.05 0.00 35.94 4.92
2858 3738 0.034574 TAGTTTGCCGGATGTGCCAT 60.035 50.000 5.05 0.00 35.94 4.40
2859 3739 1.153784 GTTTGCCGGATGTGCCATG 60.154 57.895 5.05 0.00 35.94 3.66
2860 3740 1.303970 TTTGCCGGATGTGCCATGA 60.304 52.632 5.05 0.00 35.94 3.07
2861 3741 1.594194 TTTGCCGGATGTGCCATGAC 61.594 55.000 5.05 0.00 35.94 3.06
2862 3742 2.124570 GCCGGATGTGCCATGACT 60.125 61.111 5.05 0.00 35.94 3.41
2863 3743 1.146041 GCCGGATGTGCCATGACTA 59.854 57.895 5.05 0.00 35.94 2.59
2864 3744 1.160329 GCCGGATGTGCCATGACTAC 61.160 60.000 5.05 0.00 35.94 2.73
2865 3745 0.532862 CCGGATGTGCCATGACTACC 60.533 60.000 0.00 0.00 35.94 3.18
2866 3746 0.465705 CGGATGTGCCATGACTACCT 59.534 55.000 0.00 0.00 35.94 3.08
2867 3747 1.807755 CGGATGTGCCATGACTACCTG 60.808 57.143 0.00 0.00 35.94 4.00
2868 3748 1.486310 GGATGTGCCATGACTACCTGA 59.514 52.381 0.00 0.00 36.34 3.86
2869 3749 2.092968 GGATGTGCCATGACTACCTGAA 60.093 50.000 0.00 0.00 36.34 3.02
2870 3750 3.609853 GATGTGCCATGACTACCTGAAA 58.390 45.455 0.00 0.00 0.00 2.69
2871 3751 3.719268 TGTGCCATGACTACCTGAAAT 57.281 42.857 0.00 0.00 0.00 2.17
2872 3752 4.032960 TGTGCCATGACTACCTGAAATT 57.967 40.909 0.00 0.00 0.00 1.82
2873 3753 4.406456 TGTGCCATGACTACCTGAAATTT 58.594 39.130 0.00 0.00 0.00 1.82
2874 3754 5.565509 TGTGCCATGACTACCTGAAATTTA 58.434 37.500 0.00 0.00 0.00 1.40
2875 3755 5.414454 TGTGCCATGACTACCTGAAATTTAC 59.586 40.000 0.00 0.00 0.00 2.01
2876 3756 5.648092 GTGCCATGACTACCTGAAATTTACT 59.352 40.000 0.00 0.00 0.00 2.24
2877 3757 6.151144 GTGCCATGACTACCTGAAATTTACTT 59.849 38.462 0.00 0.00 0.00 2.24
2878 3758 7.335924 GTGCCATGACTACCTGAAATTTACTTA 59.664 37.037 0.00 0.00 0.00 2.24
2879 3759 8.052748 TGCCATGACTACCTGAAATTTACTTAT 58.947 33.333 0.00 0.00 0.00 1.73
2880 3760 9.555727 GCCATGACTACCTGAAATTTACTTATA 57.444 33.333 0.00 0.00 0.00 0.98
2916 3796 8.649973 TTTTTATATTTGTGCCGACTGTTTTT 57.350 26.923 0.00 0.00 0.00 1.94
2977 3857 4.796110 TCCCCAATTTCCAGAAGGATAG 57.204 45.455 0.00 0.00 45.26 2.08
2985 3865 0.179073 CCAGAAGGATAGGTGCCACG 60.179 60.000 0.00 0.00 36.89 4.94
2994 3874 1.174078 TAGGTGCCACGACAGAACGA 61.174 55.000 0.00 0.00 37.03 3.85
3006 3886 0.443869 CAGAACGAGAATTGTGGCGG 59.556 55.000 0.00 0.00 29.05 6.13
3044 3924 0.980231 ACCTCCAGGCAGTCCATCTC 60.980 60.000 0.00 0.00 39.32 2.75
3045 3925 1.694133 CCTCCAGGCAGTCCATCTCC 61.694 65.000 0.00 0.00 33.74 3.71
3046 3926 0.979709 CTCCAGGCAGTCCATCTCCA 60.980 60.000 0.00 0.00 33.74 3.86
3048 3928 0.179026 CCAGGCAGTCCATCTCCATG 60.179 60.000 0.00 0.00 33.74 3.66
3049 3929 0.835276 CAGGCAGTCCATCTCCATGA 59.165 55.000 0.00 0.00 33.74 3.07
3050 3930 0.835941 AGGCAGTCCATCTCCATGAC 59.164 55.000 0.00 0.00 33.74 3.06
3051 3931 0.531532 GGCAGTCCATCTCCATGACG 60.532 60.000 0.00 0.00 30.57 4.35
3052 3932 0.461548 GCAGTCCATCTCCATGACGA 59.538 55.000 0.00 0.00 30.57 4.20
3057 4157 1.135112 TCCATCTCCATGACGACGTTG 60.135 52.381 0.13 0.00 30.57 4.10
3058 4158 1.280982 CATCTCCATGACGACGTTGG 58.719 55.000 11.72 11.72 30.57 3.77
3082 4182 5.473504 GTCCATCCTCTTAGTTTTGCAAGAA 59.526 40.000 0.00 0.00 30.68 2.52
3092 4192 4.485163 AGTTTTGCAAGAATAACGCCATC 58.515 39.130 0.00 0.00 0.00 3.51
3126 4226 1.467920 CTTTGGCAATCAGAGGGTCC 58.532 55.000 0.00 0.00 0.00 4.46
3127 4227 0.776810 TTTGGCAATCAGAGGGTCCA 59.223 50.000 0.00 0.00 0.00 4.02
3137 4237 0.836400 AGAGGGTCCATGACACCGTT 60.836 55.000 9.56 1.33 36.49 4.44
3147 4247 0.753867 TGACACCGTTGTGAGGCTTA 59.246 50.000 0.00 0.00 45.76 3.09
3198 4298 4.918360 TCCACACCACCTGCCCCT 62.918 66.667 0.00 0.00 0.00 4.79
3207 4307 2.041928 CCTGCCCCTCCCTTCTCT 59.958 66.667 0.00 0.00 0.00 3.10
3216 4316 2.632512 CCCTCCCTTCTCTAGAATGCTC 59.367 54.545 0.00 0.00 33.01 4.26
3220 4320 4.614475 TCCCTTCTCTAGAATGCTCTCAA 58.386 43.478 0.00 0.00 33.01 3.02
3221 4321 5.215069 TCCCTTCTCTAGAATGCTCTCAAT 58.785 41.667 0.00 0.00 33.01 2.57
3222 4322 6.377080 TCCCTTCTCTAGAATGCTCTCAATA 58.623 40.000 0.00 0.00 33.01 1.90
3223 4323 6.266558 TCCCTTCTCTAGAATGCTCTCAATAC 59.733 42.308 0.00 0.00 33.01 1.89
3224 4324 6.454795 CCTTCTCTAGAATGCTCTCAATACC 58.545 44.000 0.00 0.00 33.01 2.73
3225 4325 6.041409 CCTTCTCTAGAATGCTCTCAATACCA 59.959 42.308 0.00 0.00 33.01 3.25
3226 4326 6.647334 TCTCTAGAATGCTCTCAATACCAG 57.353 41.667 0.00 0.00 32.70 4.00
3227 4327 5.010516 TCTCTAGAATGCTCTCAATACCAGC 59.989 44.000 0.00 0.00 32.70 4.85
3228 4328 3.920231 AGAATGCTCTCAATACCAGCA 57.080 42.857 0.00 0.00 46.87 4.41
3231 4331 2.627515 TGCTCTCAATACCAGCATCC 57.372 50.000 0.00 0.00 38.25 3.51
3232 4332 1.202568 TGCTCTCAATACCAGCATCCG 60.203 52.381 0.00 0.00 38.25 4.18
3233 4333 1.202580 GCTCTCAATACCAGCATCCGT 60.203 52.381 0.00 0.00 33.06 4.69
3234 4334 2.477825 CTCTCAATACCAGCATCCGTG 58.522 52.381 0.00 0.00 0.00 4.94
3235 4335 1.831106 TCTCAATACCAGCATCCGTGT 59.169 47.619 0.00 0.00 0.00 4.49
3236 4336 2.236146 TCTCAATACCAGCATCCGTGTT 59.764 45.455 0.00 0.00 0.00 3.32
3237 4337 2.352651 CTCAATACCAGCATCCGTGTTG 59.647 50.000 0.00 0.00 36.44 3.33
3238 4338 2.027653 TCAATACCAGCATCCGTGTTGA 60.028 45.455 0.00 0.00 38.69 3.18
3239 4339 2.945008 CAATACCAGCATCCGTGTTGAT 59.055 45.455 0.00 0.00 38.69 2.57
3240 4340 2.779755 TACCAGCATCCGTGTTGATT 57.220 45.000 0.00 0.00 38.69 2.57
3241 4341 1.909700 ACCAGCATCCGTGTTGATTT 58.090 45.000 0.00 0.00 38.69 2.17
3242 4342 2.238521 ACCAGCATCCGTGTTGATTTT 58.761 42.857 0.00 0.00 38.69 1.82
3243 4343 2.228822 ACCAGCATCCGTGTTGATTTTC 59.771 45.455 0.00 0.00 38.69 2.29
3244 4344 2.228582 CCAGCATCCGTGTTGATTTTCA 59.771 45.455 0.00 0.00 38.69 2.69
3245 4345 3.236816 CAGCATCCGTGTTGATTTTCAC 58.763 45.455 0.00 0.00 38.69 3.18
3246 4346 2.884012 AGCATCCGTGTTGATTTTCACA 59.116 40.909 0.00 0.00 34.66 3.58
3247 4347 3.317711 AGCATCCGTGTTGATTTTCACAA 59.682 39.130 0.00 0.00 34.66 3.33
3248 4348 4.047822 GCATCCGTGTTGATTTTCACAAA 58.952 39.130 0.00 0.00 34.66 2.83
3249 4349 4.505922 GCATCCGTGTTGATTTTCACAAAA 59.494 37.500 0.00 0.00 34.66 2.44
3250 4350 5.177327 GCATCCGTGTTGATTTTCACAAAAT 59.823 36.000 0.00 0.00 43.43 1.82
3262 4362 5.664294 TTTCACAAAATCATCATCTGGGG 57.336 39.130 0.00 0.00 0.00 4.96
3263 4363 3.634504 TCACAAAATCATCATCTGGGGG 58.365 45.455 0.00 0.00 0.00 5.40
3264 4364 3.011595 TCACAAAATCATCATCTGGGGGT 59.988 43.478 0.00 0.00 0.00 4.95
3265 4365 3.382546 CACAAAATCATCATCTGGGGGTC 59.617 47.826 0.00 0.00 0.00 4.46
3266 4366 3.270433 ACAAAATCATCATCTGGGGGTCT 59.730 43.478 0.00 0.00 0.00 3.85
3267 4367 3.872459 AAATCATCATCTGGGGGTCTC 57.128 47.619 0.00 0.00 0.00 3.36
3268 4368 1.739750 ATCATCATCTGGGGGTCTCC 58.260 55.000 0.00 0.00 0.00 3.71
3269 4369 0.343018 TCATCATCTGGGGGTCTCCA 59.657 55.000 0.00 0.00 37.22 3.86
3270 4370 0.471617 CATCATCTGGGGGTCTCCAC 59.528 60.000 0.00 0.00 37.22 4.02
3271 4371 0.695803 ATCATCTGGGGGTCTCCACC 60.696 60.000 0.00 0.00 42.90 4.61
3279 4379 3.257133 GGTCTCCACCCAAACCCA 58.743 61.111 0.00 0.00 36.54 4.51
3280 4380 1.074951 GGTCTCCACCCAAACCCAG 59.925 63.158 0.00 0.00 36.54 4.45
3281 4381 1.074951 GTCTCCACCCAAACCCAGG 59.925 63.158 0.00 0.00 0.00 4.45
3282 4382 1.073319 TCTCCACCCAAACCCAGGA 60.073 57.895 0.00 0.00 0.00 3.86
3283 4383 0.699577 TCTCCACCCAAACCCAGGAA 60.700 55.000 0.00 0.00 0.00 3.36
3284 4384 0.251341 CTCCACCCAAACCCAGGAAG 60.251 60.000 0.00 0.00 0.00 3.46
3285 4385 1.228862 CCACCCAAACCCAGGAAGG 60.229 63.158 0.00 0.00 37.03 3.46
3294 4394 3.404773 CCAGGAAGGGTGAGGGTC 58.595 66.667 0.00 0.00 0.00 4.46
3295 4395 1.229658 CCAGGAAGGGTGAGGGTCT 60.230 63.158 0.00 0.00 0.00 3.85
3296 4396 1.557269 CCAGGAAGGGTGAGGGTCTG 61.557 65.000 0.00 0.00 0.00 3.51
3297 4397 0.838122 CAGGAAGGGTGAGGGTCTGT 60.838 60.000 0.00 0.00 0.00 3.41
3298 4398 0.104409 AGGAAGGGTGAGGGTCTGTT 60.104 55.000 0.00 0.00 0.00 3.16
3299 4399 0.325272 GGAAGGGTGAGGGTCTGTTC 59.675 60.000 0.00 0.00 0.00 3.18
3300 4400 1.056660 GAAGGGTGAGGGTCTGTTCA 58.943 55.000 0.00 0.00 0.00 3.18
3301 4401 1.420138 GAAGGGTGAGGGTCTGTTCAA 59.580 52.381 0.00 0.00 0.00 2.69
3302 4402 1.747444 AGGGTGAGGGTCTGTTCAAT 58.253 50.000 0.00 0.00 0.00 2.57
3303 4403 1.630878 AGGGTGAGGGTCTGTTCAATC 59.369 52.381 0.00 0.00 0.00 2.67
3304 4404 1.676014 GGGTGAGGGTCTGTTCAATCG 60.676 57.143 0.00 0.00 0.00 3.34
3305 4405 1.676014 GGTGAGGGTCTGTTCAATCGG 60.676 57.143 0.00 0.00 0.00 4.18
3306 4406 1.275291 GTGAGGGTCTGTTCAATCGGA 59.725 52.381 0.00 0.00 0.00 4.55
3307 4407 1.974957 TGAGGGTCTGTTCAATCGGAA 59.025 47.619 0.00 0.00 0.00 4.30
3308 4408 2.028112 TGAGGGTCTGTTCAATCGGAAG 60.028 50.000 0.00 0.00 35.82 3.46
3309 4409 1.978580 AGGGTCTGTTCAATCGGAAGT 59.021 47.619 0.00 0.00 35.82 3.01
3310 4410 2.372172 AGGGTCTGTTCAATCGGAAGTT 59.628 45.455 0.00 0.00 35.82 2.66
3311 4411 2.742589 GGGTCTGTTCAATCGGAAGTTC 59.257 50.000 0.00 0.00 35.82 3.01
3312 4412 2.742589 GGTCTGTTCAATCGGAAGTTCC 59.257 50.000 12.27 12.27 35.82 3.62
3313 4413 3.399330 GTCTGTTCAATCGGAAGTTCCA 58.601 45.455 21.76 9.34 35.91 3.53
3314 4414 3.433615 GTCTGTTCAATCGGAAGTTCCAG 59.566 47.826 21.76 13.89 35.91 3.86
3315 4415 2.151202 TGTTCAATCGGAAGTTCCAGC 58.849 47.619 21.76 4.55 35.91 4.85
3316 4416 2.151202 GTTCAATCGGAAGTTCCAGCA 58.849 47.619 21.76 5.24 35.91 4.41
3317 4417 1.808411 TCAATCGGAAGTTCCAGCAC 58.192 50.000 21.76 0.00 35.91 4.40
3318 4418 1.347707 TCAATCGGAAGTTCCAGCACT 59.652 47.619 21.76 0.00 35.91 4.40
3319 4419 2.565391 TCAATCGGAAGTTCCAGCACTA 59.435 45.455 21.76 0.00 35.91 2.74
3320 4420 2.673368 CAATCGGAAGTTCCAGCACTAC 59.327 50.000 21.76 0.00 35.91 2.73
3321 4421 1.629043 TCGGAAGTTCCAGCACTACT 58.371 50.000 21.76 0.00 35.91 2.57
3322 4422 1.272490 TCGGAAGTTCCAGCACTACTG 59.728 52.381 21.76 2.23 46.77 2.74
3330 4430 2.682893 CAGCACTACTGGAATCGCC 58.317 57.895 0.00 0.00 43.19 5.54
3331 4431 0.108186 CAGCACTACTGGAATCGCCA 60.108 55.000 0.00 0.00 46.96 5.69
3332 4432 0.108138 AGCACTACTGGAATCGCCAC 60.108 55.000 0.00 0.00 43.33 5.01
3333 4433 1.090052 GCACTACTGGAATCGCCACC 61.090 60.000 0.00 0.00 43.33 4.61
3334 4434 0.537188 CACTACTGGAATCGCCACCT 59.463 55.000 0.00 0.00 43.33 4.00
3335 4435 1.066143 CACTACTGGAATCGCCACCTT 60.066 52.381 0.00 0.00 43.33 3.50
3336 4436 1.628846 ACTACTGGAATCGCCACCTTT 59.371 47.619 0.00 0.00 43.33 3.11
3337 4437 2.009774 CTACTGGAATCGCCACCTTTG 58.990 52.381 0.00 0.00 43.33 2.77
3338 4438 1.244019 ACTGGAATCGCCACCTTTGC 61.244 55.000 0.00 0.00 43.33 3.68
3339 4439 1.937546 CTGGAATCGCCACCTTTGCC 61.938 60.000 0.00 0.00 43.33 4.52
3340 4440 2.485122 GAATCGCCACCTTTGCCG 59.515 61.111 0.00 0.00 0.00 5.69
3341 4441 2.033448 AATCGCCACCTTTGCCGA 59.967 55.556 0.00 0.00 0.00 5.54
3342 4442 1.982073 GAATCGCCACCTTTGCCGAG 61.982 60.000 0.00 0.00 32.86 4.63
3343 4443 2.748058 AATCGCCACCTTTGCCGAGT 62.748 55.000 0.00 0.00 32.86 4.18
3344 4444 3.726517 CGCCACCTTTGCCGAGTG 61.727 66.667 0.00 0.00 0.00 3.51
3345 4445 4.043200 GCCACCTTTGCCGAGTGC 62.043 66.667 0.00 0.00 41.77 4.40
3346 4446 3.365265 CCACCTTTGCCGAGTGCC 61.365 66.667 0.00 0.00 40.16 5.01
3347 4447 3.726517 CACCTTTGCCGAGTGCCG 61.727 66.667 0.00 0.00 40.16 5.69
3358 4458 4.003788 AGTGCCGGGAACACTCGG 62.004 66.667 8.15 4.04 45.06 4.63
3362 4462 2.281208 CCGGGAACACTCGGCAAA 60.281 61.111 0.00 0.00 39.78 3.68
3363 4463 2.325082 CCGGGAACACTCGGCAAAG 61.325 63.158 0.00 0.00 39.78 2.77
3364 4464 2.325082 CGGGAACACTCGGCAAAGG 61.325 63.158 0.00 0.00 0.00 3.11
3365 4465 1.971695 GGGAACACTCGGCAAAGGG 60.972 63.158 0.00 0.00 0.00 3.95
3366 4466 2.626780 GGAACACTCGGCAAAGGGC 61.627 63.158 0.00 0.00 43.74 5.19
3376 4476 1.153647 GCAAAGGGCCAATAACCGC 60.154 57.895 6.18 0.00 36.11 5.68
3377 4477 1.515487 CAAAGGGCCAATAACCGCC 59.485 57.895 6.18 0.00 44.92 6.13
3378 4478 2.049767 AAAGGGCCAATAACCGCCG 61.050 57.895 6.18 0.00 46.73 6.46
3379 4479 4.499633 AGGGCCAATAACCGCCGG 62.500 66.667 6.18 0.00 46.73 6.13
3382 4482 3.444805 GCCAATAACCGCCGGCAA 61.445 61.111 28.98 8.91 44.25 4.52
3383 4483 2.995872 GCCAATAACCGCCGGCAAA 61.996 57.895 28.98 8.49 44.25 3.68
3384 4484 1.138671 CCAATAACCGCCGGCAAAG 59.861 57.895 28.98 17.06 0.00 2.77
3385 4485 1.516169 CAATAACCGCCGGCAAAGC 60.516 57.895 28.98 0.00 0.00 3.51
3386 4486 2.706834 AATAACCGCCGGCAAAGCC 61.707 57.895 28.98 0.00 46.75 4.35
3397 4497 4.950744 CAAAGCCTTTGCCGAGTG 57.049 55.556 3.91 0.00 38.69 3.51
3398 4498 2.032981 CAAAGCCTTTGCCGAGTGT 58.967 52.632 3.91 0.00 38.69 3.55
3399 4499 0.385390 CAAAGCCTTTGCCGAGTGTT 59.615 50.000 3.91 0.00 38.69 3.32
3400 4500 0.385390 AAAGCCTTTGCCGAGTGTTG 59.615 50.000 0.00 0.00 38.69 3.33
3401 4501 2.050077 GCCTTTGCCGAGTGTTGC 60.050 61.111 0.00 0.00 0.00 4.17
3402 4502 2.644992 CCTTTGCCGAGTGTTGCC 59.355 61.111 0.00 0.00 0.00 4.52
3403 4503 1.898574 CCTTTGCCGAGTGTTGCCT 60.899 57.895 0.00 0.00 0.00 4.75
3404 4504 1.576421 CTTTGCCGAGTGTTGCCTC 59.424 57.895 0.00 0.00 0.00 4.70
3435 4535 4.143333 CCGGCGTACACCCCTCAG 62.143 72.222 6.01 0.00 0.00 3.35
3436 4536 4.143333 CGGCGTACACCCCTCAGG 62.143 72.222 0.00 0.00 43.78 3.86
3437 4537 4.468689 GGCGTACACCCCTCAGGC 62.469 72.222 0.00 0.00 40.58 4.85
3438 4538 3.702048 GCGTACACCCCTCAGGCA 61.702 66.667 0.00 0.00 40.58 4.75
3439 4539 3.065306 CGTACACCCCTCAGGCAA 58.935 61.111 0.00 0.00 40.58 4.52
3440 4540 1.373435 CGTACACCCCTCAGGCAAA 59.627 57.895 0.00 0.00 40.58 3.68
3441 4541 0.953960 CGTACACCCCTCAGGCAAAC 60.954 60.000 0.00 0.00 40.58 2.93
3442 4542 0.109723 GTACACCCCTCAGGCAAACA 59.890 55.000 0.00 0.00 40.58 2.83
3443 4543 0.847373 TACACCCCTCAGGCAAACAA 59.153 50.000 0.00 0.00 40.58 2.83
3444 4544 0.032615 ACACCCCTCAGGCAAACAAA 60.033 50.000 0.00 0.00 40.58 2.83
3445 4545 1.118838 CACCCCTCAGGCAAACAAAA 58.881 50.000 0.00 0.00 40.58 2.44
3446 4546 1.484240 CACCCCTCAGGCAAACAAAAA 59.516 47.619 0.00 0.00 40.58 1.94
3447 4547 2.104622 CACCCCTCAGGCAAACAAAAAT 59.895 45.455 0.00 0.00 40.58 1.82
3448 4548 2.368548 ACCCCTCAGGCAAACAAAAATC 59.631 45.455 0.00 0.00 40.58 2.17
3449 4549 2.634453 CCCCTCAGGCAAACAAAAATCT 59.366 45.455 0.00 0.00 0.00 2.40
3450 4550 3.555586 CCCCTCAGGCAAACAAAAATCTG 60.556 47.826 0.00 0.00 0.00 2.90
3451 4551 3.062042 CCTCAGGCAAACAAAAATCTGC 58.938 45.455 0.00 0.00 0.00 4.26
3454 4554 2.147436 GGCAAACAAAAATCTGCCGA 57.853 45.000 0.00 0.00 44.52 5.54
3455 4555 2.061028 GGCAAACAAAAATCTGCCGAG 58.939 47.619 0.00 0.00 44.52 4.63
3456 4556 2.288152 GGCAAACAAAAATCTGCCGAGA 60.288 45.455 0.00 0.00 44.52 4.04
3457 4557 2.982470 GCAAACAAAAATCTGCCGAGAG 59.018 45.455 0.00 0.00 0.00 3.20
3458 4558 2.982470 CAAACAAAAATCTGCCGAGAGC 59.018 45.455 0.00 0.00 44.14 4.09
3459 4559 1.168714 ACAAAAATCTGCCGAGAGCC 58.831 50.000 0.00 0.00 42.71 4.70
3460 4560 1.167851 CAAAAATCTGCCGAGAGCCA 58.832 50.000 0.00 0.00 42.71 4.75
3461 4561 1.541147 CAAAAATCTGCCGAGAGCCAA 59.459 47.619 0.00 0.00 42.71 4.52
3462 4562 1.909700 AAAATCTGCCGAGAGCCAAA 58.090 45.000 0.00 0.00 42.71 3.28
3463 4563 1.909700 AAATCTGCCGAGAGCCAAAA 58.090 45.000 0.00 0.00 42.71 2.44
3464 4564 1.168714 AATCTGCCGAGAGCCAAAAC 58.831 50.000 0.00 0.00 42.71 2.43
3465 4565 1.021390 ATCTGCCGAGAGCCAAAACG 61.021 55.000 0.00 0.00 42.71 3.60
3466 4566 1.961277 CTGCCGAGAGCCAAAACGT 60.961 57.895 0.00 0.00 42.71 3.99
3467 4567 2.175184 CTGCCGAGAGCCAAAACGTG 62.175 60.000 0.00 0.00 42.71 4.49
3475 4575 2.637025 CCAAAACGTGGGCACTCG 59.363 61.111 9.21 9.21 44.64 4.18
3476 4576 2.637025 CAAAACGTGGGCACTCGG 59.363 61.111 15.66 0.00 0.00 4.63
3477 4577 3.284449 AAAACGTGGGCACTCGGC 61.284 61.111 15.66 0.00 43.74 5.54
3487 4587 2.872028 GCACTCGGCAAACAGTTTG 58.128 52.632 20.10 20.10 43.97 2.93
3495 4595 3.461843 CAAACAGTTTGCCGAGAGC 57.538 52.632 13.11 0.00 44.14 4.09
3496 4596 0.040067 CAAACAGTTTGCCGAGAGCC 60.040 55.000 13.11 0.00 42.71 4.70
3497 4597 0.465460 AAACAGTTTGCCGAGAGCCA 60.465 50.000 0.00 0.00 42.71 4.75
3498 4598 0.465460 AACAGTTTGCCGAGAGCCAA 60.465 50.000 0.00 0.00 42.71 4.52
3499 4599 0.465460 ACAGTTTGCCGAGAGCCAAA 60.465 50.000 0.00 0.00 42.71 3.28
3500 4600 0.040067 CAGTTTGCCGAGAGCCAAAC 60.040 55.000 7.87 7.87 42.71 2.93
3501 4601 1.082104 GTTTGCCGAGAGCCAAACG 60.082 57.895 0.00 0.00 42.71 3.60
3502 4602 1.227704 TTTGCCGAGAGCCAAACGA 60.228 52.632 0.00 0.00 42.71 3.85
3503 4603 1.503818 TTTGCCGAGAGCCAAACGAC 61.504 55.000 0.00 0.00 42.71 4.34
3504 4604 3.479269 GCCGAGAGCCAAACGACG 61.479 66.667 0.00 0.00 34.35 5.12
3505 4605 3.479269 CCGAGAGCCAAACGACGC 61.479 66.667 0.00 0.00 0.00 5.19
3506 4606 3.479269 CGAGAGCCAAACGACGCC 61.479 66.667 0.00 0.00 0.00 5.68
3507 4607 2.048127 GAGAGCCAAACGACGCCT 60.048 61.111 0.00 0.00 0.00 5.52
3508 4608 2.048127 AGAGCCAAACGACGCCTC 60.048 61.111 0.00 0.00 0.00 4.70
3509 4609 2.048127 GAGCCAAACGACGCCTCT 60.048 61.111 0.00 0.00 0.00 3.69
3510 4610 2.048127 AGCCAAACGACGCCTCTC 60.048 61.111 0.00 0.00 0.00 3.20
3511 4611 3.479269 GCCAAACGACGCCTCTCG 61.479 66.667 0.00 0.00 45.38 4.04
3512 4612 2.809601 CCAAACGACGCCTCTCGG 60.810 66.667 0.00 0.00 43.86 4.63
3528 4628 6.927294 CCTCTCGGCTAAATAAATTGAACT 57.073 37.500 0.00 0.00 0.00 3.01
3529 4629 7.321745 CCTCTCGGCTAAATAAATTGAACTT 57.678 36.000 0.00 0.00 0.00 2.66
3530 4630 8.433421 CCTCTCGGCTAAATAAATTGAACTTA 57.567 34.615 0.00 0.00 0.00 2.24
3531 4631 8.336080 CCTCTCGGCTAAATAAATTGAACTTAC 58.664 37.037 0.00 0.00 0.00 2.34
3532 4632 7.902032 TCTCGGCTAAATAAATTGAACTTACG 58.098 34.615 0.00 0.00 0.00 3.18
3533 4633 7.007313 TCGGCTAAATAAATTGAACTTACGG 57.993 36.000 0.00 0.00 0.00 4.02
3534 4634 6.817641 TCGGCTAAATAAATTGAACTTACGGA 59.182 34.615 0.00 0.00 0.00 4.69
3535 4635 6.903479 CGGCTAAATAAATTGAACTTACGGAC 59.097 38.462 0.00 0.00 0.00 4.79
3536 4636 6.903479 GGCTAAATAAATTGAACTTACGGACG 59.097 38.462 0.00 0.00 0.00 4.79
3537 4637 6.903479 GCTAAATAAATTGAACTTACGGACGG 59.097 38.462 0.00 0.00 0.00 4.79
3538 4638 4.870221 ATAAATTGAACTTACGGACGGC 57.130 40.909 0.00 0.00 0.00 5.68
3539 4639 1.073177 AATTGAACTTACGGACGGCG 58.927 50.000 4.80 4.80 0.00 6.46
3540 4640 0.738412 ATTGAACTTACGGACGGCGG 60.738 55.000 13.24 0.00 0.00 6.13
3541 4641 1.804396 TTGAACTTACGGACGGCGGA 61.804 55.000 13.24 0.00 0.00 5.54
3542 4642 1.803117 GAACTTACGGACGGCGGAC 60.803 63.158 13.24 4.65 0.00 4.79
3556 4656 4.899239 GGACGGAGATGGCGCCAG 62.899 72.222 35.36 22.70 32.92 4.85
3579 4679 4.454948 TGGCACACCTTTGTCGAG 57.545 55.556 0.00 0.00 36.63 4.04
3580 4680 1.524961 TGGCACACCTTTGTCGAGT 59.475 52.632 0.00 0.00 36.63 4.18
3581 4681 0.813610 TGGCACACCTTTGTCGAGTG 60.814 55.000 0.59 0.59 36.63 3.51
3583 4683 1.941812 CACACCTTTGTCGAGTGCC 59.058 57.895 1.96 0.00 34.83 5.01
3584 4684 1.227853 ACACCTTTGTCGAGTGCCC 60.228 57.895 1.96 0.00 34.83 5.36
3585 4685 1.966451 CACCTTTGTCGAGTGCCCC 60.966 63.158 0.00 0.00 0.00 5.80
3586 4686 2.147387 ACCTTTGTCGAGTGCCCCT 61.147 57.895 0.00 0.00 0.00 4.79
3587 4687 1.376037 CCTTTGTCGAGTGCCCCTC 60.376 63.158 0.00 0.00 36.80 4.30
3588 4688 1.674057 CTTTGTCGAGTGCCCCTCT 59.326 57.895 0.00 0.00 38.11 3.69
3589 4689 0.390472 CTTTGTCGAGTGCCCCTCTC 60.390 60.000 0.00 0.00 38.11 3.20
3590 4690 0.832135 TTTGTCGAGTGCCCCTCTCT 60.832 55.000 0.00 0.00 38.11 3.10
3591 4691 1.536073 TTGTCGAGTGCCCCTCTCTG 61.536 60.000 0.00 0.00 38.11 3.35
3592 4692 3.071206 TCGAGTGCCCCTCTCTGC 61.071 66.667 0.00 0.00 38.11 4.26
3593 4693 3.385384 CGAGTGCCCCTCTCTGCA 61.385 66.667 0.00 0.00 38.11 4.41
3594 4694 2.947532 CGAGTGCCCCTCTCTGCAA 61.948 63.158 0.00 0.00 39.57 4.08
3595 4695 1.376466 GAGTGCCCCTCTCTGCAAA 59.624 57.895 0.00 0.00 39.57 3.68
3596 4696 0.676151 GAGTGCCCCTCTCTGCAAAG 60.676 60.000 0.00 0.00 39.57 2.77
3597 4697 2.034687 TGCCCCTCTCTGCAAAGC 59.965 61.111 0.00 0.00 33.87 3.51
3598 4698 3.130160 GCCCCTCTCTGCAAAGCG 61.130 66.667 0.00 0.00 0.00 4.68
3599 4699 2.665000 CCCCTCTCTGCAAAGCGA 59.335 61.111 0.00 0.00 0.00 4.93
3600 4700 1.003355 CCCCTCTCTGCAAAGCGAA 60.003 57.895 0.00 0.00 0.00 4.70
3601 4701 1.301677 CCCCTCTCTGCAAAGCGAAC 61.302 60.000 0.00 0.00 0.00 3.95
3602 4702 1.301677 CCCTCTCTGCAAAGCGAACC 61.302 60.000 0.00 0.00 0.00 3.62
3603 4703 0.603707 CCTCTCTGCAAAGCGAACCA 60.604 55.000 0.00 0.00 0.00 3.67
3604 4704 0.514691 CTCTCTGCAAAGCGAACCAC 59.485 55.000 0.00 0.00 0.00 4.16
3605 4705 0.106708 TCTCTGCAAAGCGAACCACT 59.893 50.000 0.00 0.00 0.00 4.00
3606 4706 1.343142 TCTCTGCAAAGCGAACCACTA 59.657 47.619 0.00 0.00 0.00 2.74
3607 4707 2.143122 CTCTGCAAAGCGAACCACTAA 58.857 47.619 0.00 0.00 0.00 2.24
3608 4708 2.143122 TCTGCAAAGCGAACCACTAAG 58.857 47.619 0.00 0.00 0.00 2.18
3609 4709 2.143122 CTGCAAAGCGAACCACTAAGA 58.857 47.619 0.00 0.00 0.00 2.10
3610 4710 2.548057 CTGCAAAGCGAACCACTAAGAA 59.452 45.455 0.00 0.00 0.00 2.52
3611 4711 2.548057 TGCAAAGCGAACCACTAAGAAG 59.452 45.455 0.00 0.00 0.00 2.85
3612 4712 2.665794 GCAAAGCGAACCACTAAGAAGC 60.666 50.000 0.00 0.00 0.00 3.86
3613 4713 1.429463 AAGCGAACCACTAAGAAGCG 58.571 50.000 0.00 0.00 0.00 4.68
3614 4714 0.389948 AGCGAACCACTAAGAAGCGG 60.390 55.000 0.00 0.00 0.00 5.52
3615 4715 1.967597 GCGAACCACTAAGAAGCGGC 61.968 60.000 0.00 0.00 0.00 6.53
3616 4716 1.359459 CGAACCACTAAGAAGCGGCC 61.359 60.000 0.00 0.00 0.00 6.13
3617 4717 0.321298 GAACCACTAAGAAGCGGCCA 60.321 55.000 2.24 0.00 0.00 5.36
3618 4718 0.605589 AACCACTAAGAAGCGGCCAC 60.606 55.000 2.24 0.00 0.00 5.01
3619 4719 2.100631 CCACTAAGAAGCGGCCACG 61.101 63.158 2.24 0.00 44.63 4.94
3620 4720 1.374252 CACTAAGAAGCGGCCACGT 60.374 57.895 2.24 0.00 43.45 4.49
3621 4721 1.374252 ACTAAGAAGCGGCCACGTG 60.374 57.895 9.08 9.08 43.45 4.49
3622 4722 2.740714 CTAAGAAGCGGCCACGTGC 61.741 63.158 10.91 5.69 43.45 5.34
3631 4731 3.490759 GCCACGTGCCGATGACTG 61.491 66.667 10.91 0.00 0.00 3.51
3632 4732 2.815211 CCACGTGCCGATGACTGG 60.815 66.667 10.91 0.00 0.00 4.00
3633 4733 2.261361 CACGTGCCGATGACTGGA 59.739 61.111 0.82 0.00 0.00 3.86
3634 4734 2.094659 CACGTGCCGATGACTGGAC 61.095 63.158 0.82 0.00 0.00 4.02
3635 4735 2.261361 CGTGCCGATGACTGGACA 59.739 61.111 0.00 0.00 0.00 4.02
3636 4736 1.153568 CGTGCCGATGACTGGACAT 60.154 57.895 0.00 0.00 0.00 3.06
3637 4737 1.423721 CGTGCCGATGACTGGACATG 61.424 60.000 0.00 0.00 0.00 3.21
3638 4738 0.391661 GTGCCGATGACTGGACATGT 60.392 55.000 0.00 0.00 0.00 3.21
3639 4739 0.391528 TGCCGATGACTGGACATGTG 60.392 55.000 1.15 0.00 0.00 3.21
3640 4740 1.091771 GCCGATGACTGGACATGTGG 61.092 60.000 1.15 0.00 0.00 4.17
3641 4741 0.462581 CCGATGACTGGACATGTGGG 60.463 60.000 1.15 0.00 0.00 4.61
3642 4742 0.250234 CGATGACTGGACATGTGGGT 59.750 55.000 1.15 0.00 0.00 4.51
3643 4743 1.740380 CGATGACTGGACATGTGGGTC 60.740 57.143 1.15 9.14 37.06 4.46
3654 4754 2.990479 GTGGGTCCACAGCCTAGG 59.010 66.667 14.69 3.67 45.53 3.02
3655 4755 3.009115 TGGGTCCACAGCCTAGGC 61.009 66.667 27.19 27.19 41.28 3.93
3677 4777 2.282180 GGCCACCTTTGCCGAGAA 60.282 61.111 0.00 0.00 39.48 2.87
3678 4778 2.626780 GGCCACCTTTGCCGAGAAC 61.627 63.158 0.00 0.00 39.48 3.01
3679 4779 2.626780 GCCACCTTTGCCGAGAACC 61.627 63.158 0.00 0.00 0.00 3.62
3680 4780 2.325082 CCACCTTTGCCGAGAACCG 61.325 63.158 0.00 0.00 38.18 4.44
3681 4781 2.668550 ACCTTTGCCGAGAACCGC 60.669 61.111 0.00 0.00 36.84 5.68
3682 4782 2.358737 CCTTTGCCGAGAACCGCT 60.359 61.111 0.00 0.00 36.84 5.52
3683 4783 2.391389 CCTTTGCCGAGAACCGCTC 61.391 63.158 0.00 0.00 40.38 5.03
3684 4784 1.374758 CTTTGCCGAGAACCGCTCT 60.375 57.895 0.00 0.00 41.66 4.09
3685 4785 1.355066 CTTTGCCGAGAACCGCTCTC 61.355 60.000 3.32 3.32 46.35 3.20
3698 4798 0.931005 CGCTCTCGGCAAAGATAACC 59.069 55.000 0.00 0.00 41.91 2.85
3699 4799 1.739035 CGCTCTCGGCAAAGATAACCA 60.739 52.381 0.00 0.00 41.91 3.67
3700 4800 1.666189 GCTCTCGGCAAAGATAACCAC 59.334 52.381 0.00 0.00 41.35 4.16
3701 4801 2.678190 GCTCTCGGCAAAGATAACCACT 60.678 50.000 0.00 0.00 41.35 4.00
3702 4802 3.430374 GCTCTCGGCAAAGATAACCACTA 60.430 47.826 0.00 0.00 41.35 2.74
3703 4803 4.755411 CTCTCGGCAAAGATAACCACTAA 58.245 43.478 0.00 0.00 0.00 2.24
3704 4804 4.755411 TCTCGGCAAAGATAACCACTAAG 58.245 43.478 0.00 0.00 0.00 2.18
3705 4805 4.464951 TCTCGGCAAAGATAACCACTAAGA 59.535 41.667 0.00 0.00 0.00 2.10
3706 4806 5.046878 TCTCGGCAAAGATAACCACTAAGAA 60.047 40.000 0.00 0.00 0.00 2.52
3707 4807 5.175859 TCGGCAAAGATAACCACTAAGAAG 58.824 41.667 0.00 0.00 0.00 2.85
3708 4808 4.935808 CGGCAAAGATAACCACTAAGAAGT 59.064 41.667 0.00 0.00 35.91 3.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
696 697 4.668837 CGACAAAATACAAGGAAACACACG 59.331 41.667 0.00 0.00 0.00 4.49
725 726 3.446161 CGGTGTATGTCTACTCCTCCAAA 59.554 47.826 3.28 0.00 38.71 3.28
786 788 2.099431 GTGCTCTCTCTGCTTGCCG 61.099 63.158 0.00 0.00 0.00 5.69
910 993 5.689514 CCTGATACGATTCTGCTTTAGACAG 59.310 44.000 0.00 0.00 34.43 3.51
1128 1294 3.127533 CCGCCTGCCTGCTTACAC 61.128 66.667 0.00 0.00 0.00 2.90
1174 1340 2.600173 CACCGGGTTTGCATGGGT 60.600 61.111 6.32 0.00 0.00 4.51
1192 1358 1.000506 GTACCACTGACTGAAGCGGAA 59.999 52.381 0.00 0.00 0.00 4.30
1208 1374 0.657368 CGTACGCGGATTACGGTACC 60.657 60.000 17.10 0.16 41.75 3.34
1275 1441 4.208686 CGGTCGTAGAGGCCCAGC 62.209 72.222 0.00 0.00 43.19 4.85
1276 1442 4.208686 GCGGTCGTAGAGGCCCAG 62.209 72.222 0.00 0.00 43.19 4.45
1283 1449 1.968017 ACAACCTCGCGGTCGTAGA 60.968 57.895 6.13 0.00 44.73 2.59
1419 1585 3.059982 CTGTCTGGGTGAAGCGGA 58.940 61.111 0.00 0.00 0.00 5.54
1438 1605 1.595489 GGCGATACGACGTACACGAAT 60.595 52.381 27.96 9.02 43.02 3.34
1524 1691 0.249911 GACTTGTCTGTGGCTTCGGT 60.250 55.000 0.00 0.00 0.00 4.69
1578 1745 0.599558 CAGTGGGGTCGTCGTCTTTA 59.400 55.000 0.00 0.00 0.00 1.85
1656 1823 1.533338 GCAAAGGCAATCTCAGCATCG 60.533 52.381 0.00 0.00 40.72 3.84
1676 1843 1.852942 ACGTACCTCATGCGCAATAG 58.147 50.000 17.11 15.03 40.56 1.73
1741 1970 4.495690 AGGAGAGAAAATTAGGCACCTC 57.504 45.455 0.00 0.00 0.00 3.85
1770 2003 3.667960 GCAACGATGTGACCAATCTGAAC 60.668 47.826 0.00 0.00 0.00 3.18
1796 2029 4.151157 GCGTAACAAATTTCCGAGTAGTGT 59.849 41.667 0.00 0.00 0.00 3.55
1856 2089 3.452755 TGCAGTCATACATACCTTCGG 57.547 47.619 0.00 0.00 0.00 4.30
1882 2132 9.366216 CGTGTATGTGTGTGCCTATATATTTAT 57.634 33.333 0.00 0.00 0.00 1.40
1883 2133 8.361889 ACGTGTATGTGTGTGCCTATATATTTA 58.638 33.333 0.00 0.00 0.00 1.40
1884 2134 7.214381 ACGTGTATGTGTGTGCCTATATATTT 58.786 34.615 0.00 0.00 0.00 1.40
1885 2135 6.755206 ACGTGTATGTGTGTGCCTATATATT 58.245 36.000 0.00 0.00 0.00 1.28
1886 2136 6.340962 ACGTGTATGTGTGTGCCTATATAT 57.659 37.500 0.00 0.00 0.00 0.86
1887 2137 5.777850 ACGTGTATGTGTGTGCCTATATA 57.222 39.130 0.00 0.00 0.00 0.86
1888 2138 4.665833 ACGTGTATGTGTGTGCCTATAT 57.334 40.909 0.00 0.00 0.00 0.86
1889 2139 4.398673 TGTACGTGTATGTGTGTGCCTATA 59.601 41.667 0.00 0.00 0.00 1.31
1890 2140 3.193903 TGTACGTGTATGTGTGTGCCTAT 59.806 43.478 0.00 0.00 0.00 2.57
1891 2141 2.557490 TGTACGTGTATGTGTGTGCCTA 59.443 45.455 0.00 0.00 0.00 3.93
1892 2142 1.341852 TGTACGTGTATGTGTGTGCCT 59.658 47.619 0.00 0.00 0.00 4.75
1893 2143 1.458064 GTGTACGTGTATGTGTGTGCC 59.542 52.381 0.00 0.00 0.00 5.01
1894 2144 2.128821 TGTGTACGTGTATGTGTGTGC 58.871 47.619 0.00 0.00 0.00 4.57
1966 2227 7.684670 CGCAGCACAACTAATTAATTAAGAGA 58.315 34.615 9.15 0.00 0.00 3.10
2064 2331 8.278639 TGTGATTTTCAGGGGTTATATATGTGT 58.721 33.333 0.00 0.00 0.00 3.72
2079 2346 3.316029 TGAAGCCACACTGTGATTTTCAG 59.684 43.478 15.86 0.00 35.23 3.02
2129 2396 6.198966 GTGTAATTTTGCAAGAACTTGACCTG 59.801 38.462 17.19 0.00 42.93 4.00
2134 2401 9.683069 ATTCTAGTGTAATTTTGCAAGAACTTG 57.317 29.630 9.82 9.82 43.14 3.16
2213 2565 3.845259 GAGGCATCGCGGTGGGTA 61.845 66.667 22.81 0.00 0.00 3.69
2227 2817 3.329542 TAGCGGCCAAGCAAGGAGG 62.330 63.158 2.24 0.00 40.15 4.30
2228 2818 2.109126 GTAGCGGCCAAGCAAGGAG 61.109 63.158 2.24 0.00 40.15 3.69
2230 2820 2.359850 TGTAGCGGCCAAGCAAGG 60.360 61.111 2.24 0.00 40.15 3.61
2231 2821 0.391130 TACTGTAGCGGCCAAGCAAG 60.391 55.000 2.24 1.12 40.15 4.01
2232 2822 0.391130 CTACTGTAGCGGCCAAGCAA 60.391 55.000 2.24 0.00 40.15 3.91
2234 2824 1.521681 CCTACTGTAGCGGCCAAGC 60.522 63.158 9.35 0.00 37.41 4.01
2235 2825 0.753262 ATCCTACTGTAGCGGCCAAG 59.247 55.000 9.35 0.00 0.00 3.61
2237 2827 2.076207 TTATCCTACTGTAGCGGCCA 57.924 50.000 9.35 0.00 0.00 5.36
2239 2829 3.662247 ACATTATCCTACTGTAGCGGC 57.338 47.619 9.35 0.00 0.00 6.53
2240 2830 4.982916 GTGAACATTATCCTACTGTAGCGG 59.017 45.833 9.35 0.00 0.00 5.52
2241 2831 5.833082 AGTGAACATTATCCTACTGTAGCG 58.167 41.667 9.35 3.52 0.00 4.26
2281 3151 6.985645 ACTCATGTGTTACGGTGTTACTTTAA 59.014 34.615 0.00 0.00 0.00 1.52
2282 3152 6.514947 ACTCATGTGTTACGGTGTTACTTTA 58.485 36.000 0.00 0.00 0.00 1.85
2283 3153 5.362263 ACTCATGTGTTACGGTGTTACTTT 58.638 37.500 0.00 0.00 0.00 2.66
2284 3154 4.952460 ACTCATGTGTTACGGTGTTACTT 58.048 39.130 0.00 0.00 0.00 2.24
2285 3155 4.595762 ACTCATGTGTTACGGTGTTACT 57.404 40.909 0.00 0.00 0.00 2.24
2286 3156 4.508861 ACAACTCATGTGTTACGGTGTTAC 59.491 41.667 12.50 0.00 41.93 2.50
2304 3179 1.726853 GGCGCAGTCATAGAACAACT 58.273 50.000 10.83 0.00 0.00 3.16
2455 3330 5.220739 CCGACTCTCTTTCAATTATTGCCTG 60.221 44.000 0.00 0.00 0.00 4.85
2457 3332 4.636206 ACCGACTCTCTTTCAATTATTGCC 59.364 41.667 0.00 0.00 0.00 4.52
2463 3338 4.058817 GTGACACCGACTCTCTTTCAATT 58.941 43.478 0.00 0.00 0.00 2.32
2474 3349 1.686587 TGTGATCTTGTGACACCGACT 59.313 47.619 2.45 0.00 34.18 4.18
2482 3360 7.890127 AGGATTAAAAAGGATGTGATCTTGTGA 59.110 33.333 0.00 0.00 0.00 3.58
2492 3370 9.753674 TTGTATCTGAAGGATTAAAAAGGATGT 57.246 29.630 0.00 0.00 35.98 3.06
2498 3376 8.802267 CCCTTGTTGTATCTGAAGGATTAAAAA 58.198 33.333 0.00 0.00 37.74 1.94
2500 3378 6.377146 GCCCTTGTTGTATCTGAAGGATTAAA 59.623 38.462 0.00 0.00 37.74 1.52
2503 3381 4.263905 TGCCCTTGTTGTATCTGAAGGATT 60.264 41.667 0.00 0.00 37.74 3.01
2516 3394 1.893808 ACACGCTCTGCCCTTGTTG 60.894 57.895 0.00 0.00 0.00 3.33
2517 3395 1.893808 CACACGCTCTGCCCTTGTT 60.894 57.895 0.00 0.00 0.00 2.83
2519 3397 1.376424 ATCACACGCTCTGCCCTTG 60.376 57.895 0.00 0.00 0.00 3.61
2525 3403 1.499056 GGTTGCATCACACGCTCTG 59.501 57.895 0.00 0.00 0.00 3.35
2526 3404 1.672356 GGGTTGCATCACACGCTCT 60.672 57.895 0.00 0.00 0.00 4.09
2533 3411 2.674357 GCATGATTTTGGGTTGCATCAC 59.326 45.455 0.00 0.00 33.58 3.06
2536 3414 2.355310 CCTGCATGATTTTGGGTTGCAT 60.355 45.455 0.00 0.00 41.95 3.96
2537 3415 1.002201 CCTGCATGATTTTGGGTTGCA 59.998 47.619 0.00 0.00 40.73 4.08
2538 3416 1.275856 TCCTGCATGATTTTGGGTTGC 59.724 47.619 0.00 0.00 0.00 4.17
2554 3432 6.042093 TCCTTATATAGTTTCAGTGCCTCCTG 59.958 42.308 0.00 0.00 0.00 3.86
2562 3440 6.750148 CGGAGCTTCCTTATATAGTTTCAGT 58.250 40.000 0.00 0.00 33.30 3.41
2608 3486 2.558380 AATCCTTCAGCGGGGGCTTC 62.558 60.000 0.00 0.00 0.00 3.86
2614 3492 3.577389 AGGAAAATCCTTCAGCGGG 57.423 52.632 0.00 0.00 46.91 6.13
2625 3503 3.320826 CCAGGGTTTGTCGAAAGGAAAAT 59.679 43.478 0.00 0.00 0.00 1.82
2657 3535 6.183360 CCTCAGTCTTGTCGATATAAGTTGGA 60.183 42.308 0.00 0.00 0.00 3.53
2659 3537 5.460419 GCCTCAGTCTTGTCGATATAAGTTG 59.540 44.000 0.00 0.00 0.00 3.16
2704 3582 3.696051 TCAACTTGGGCATTCTAATCTGC 59.304 43.478 0.00 0.00 37.66 4.26
2756 3635 4.350816 AGGGATGTCCATTCATATCGGAAA 59.649 41.667 0.86 0.00 38.24 3.13
2776 3656 3.689649 CGATCAAAAACTACCAGGAAGGG 59.310 47.826 0.00 0.00 43.89 3.95
2777 3657 4.575885 TCGATCAAAAACTACCAGGAAGG 58.424 43.478 0.00 0.00 45.67 3.46
2778 3658 6.183360 GGAATCGATCAAAAACTACCAGGAAG 60.183 42.308 0.00 0.00 0.00 3.46
2779 3659 5.646360 GGAATCGATCAAAAACTACCAGGAA 59.354 40.000 0.00 0.00 0.00 3.36
2780 3660 5.183228 GGAATCGATCAAAAACTACCAGGA 58.817 41.667 0.00 0.00 0.00 3.86
2781 3661 4.034048 CGGAATCGATCAAAAACTACCAGG 59.966 45.833 0.00 0.00 39.00 4.45
2782 3662 4.630069 ACGGAATCGATCAAAAACTACCAG 59.370 41.667 0.00 0.00 40.11 4.00
2783 3663 4.390603 CACGGAATCGATCAAAAACTACCA 59.609 41.667 0.00 0.00 40.11 3.25
2784 3664 4.390909 ACACGGAATCGATCAAAAACTACC 59.609 41.667 0.00 0.00 40.11 3.18
2785 3665 5.526010 ACACGGAATCGATCAAAAACTAC 57.474 39.130 0.00 0.00 40.11 2.73
2786 3666 7.010738 GGAATACACGGAATCGATCAAAAACTA 59.989 37.037 0.00 0.00 40.11 2.24
2787 3667 6.183360 GGAATACACGGAATCGATCAAAAACT 60.183 38.462 0.00 0.00 40.11 2.66
2788 3668 5.963586 GGAATACACGGAATCGATCAAAAAC 59.036 40.000 0.00 0.00 40.11 2.43
2789 3669 5.644206 TGGAATACACGGAATCGATCAAAAA 59.356 36.000 0.00 0.00 40.11 1.94
2790 3670 5.064198 GTGGAATACACGGAATCGATCAAAA 59.936 40.000 0.00 0.00 40.85 2.44
2791 3671 4.569162 GTGGAATACACGGAATCGATCAAA 59.431 41.667 0.00 0.00 40.85 2.69
2792 3672 4.116961 GTGGAATACACGGAATCGATCAA 58.883 43.478 0.00 0.00 40.85 2.57
2793 3673 3.713288 GTGGAATACACGGAATCGATCA 58.287 45.455 0.00 0.00 40.85 2.92
2812 3692 6.878317 TCTCCTAACCACTCTTGAATATGTG 58.122 40.000 0.00 0.00 0.00 3.21
2813 3693 6.670027 ACTCTCCTAACCACTCTTGAATATGT 59.330 38.462 0.00 0.00 0.00 2.29
2814 3694 7.118496 ACTCTCCTAACCACTCTTGAATATG 57.882 40.000 0.00 0.00 0.00 1.78
2815 3695 7.741554 AACTCTCCTAACCACTCTTGAATAT 57.258 36.000 0.00 0.00 0.00 1.28
2816 3696 7.894364 ACTAACTCTCCTAACCACTCTTGAATA 59.106 37.037 0.00 0.00 0.00 1.75
2817 3697 6.726764 ACTAACTCTCCTAACCACTCTTGAAT 59.273 38.462 0.00 0.00 0.00 2.57
2818 3698 6.075984 ACTAACTCTCCTAACCACTCTTGAA 58.924 40.000 0.00 0.00 0.00 2.69
2819 3699 5.642165 ACTAACTCTCCTAACCACTCTTGA 58.358 41.667 0.00 0.00 0.00 3.02
2820 3700 5.986501 ACTAACTCTCCTAACCACTCTTG 57.013 43.478 0.00 0.00 0.00 3.02
2821 3701 6.741801 GCAAACTAACTCTCCTAACCACTCTT 60.742 42.308 0.00 0.00 0.00 2.85
2822 3702 5.279556 GCAAACTAACTCTCCTAACCACTCT 60.280 44.000 0.00 0.00 0.00 3.24
2823 3703 4.930405 GCAAACTAACTCTCCTAACCACTC 59.070 45.833 0.00 0.00 0.00 3.51
2824 3704 4.262938 GGCAAACTAACTCTCCTAACCACT 60.263 45.833 0.00 0.00 0.00 4.00
2825 3705 4.001652 GGCAAACTAACTCTCCTAACCAC 58.998 47.826 0.00 0.00 0.00 4.16
2826 3706 3.306502 CGGCAAACTAACTCTCCTAACCA 60.307 47.826 0.00 0.00 0.00 3.67
2827 3707 3.259902 CGGCAAACTAACTCTCCTAACC 58.740 50.000 0.00 0.00 0.00 2.85
2828 3708 3.056322 TCCGGCAAACTAACTCTCCTAAC 60.056 47.826 0.00 0.00 0.00 2.34
2829 3709 3.167485 TCCGGCAAACTAACTCTCCTAA 58.833 45.455 0.00 0.00 0.00 2.69
2830 3710 2.811410 TCCGGCAAACTAACTCTCCTA 58.189 47.619 0.00 0.00 0.00 2.94
2831 3711 1.640917 TCCGGCAAACTAACTCTCCT 58.359 50.000 0.00 0.00 0.00 3.69
2832 3712 2.280628 CATCCGGCAAACTAACTCTCC 58.719 52.381 0.00 0.00 0.00 3.71
2833 3713 2.673368 CACATCCGGCAAACTAACTCTC 59.327 50.000 0.00 0.00 0.00 3.20
2834 3714 2.699954 CACATCCGGCAAACTAACTCT 58.300 47.619 0.00 0.00 0.00 3.24
2835 3715 1.130561 GCACATCCGGCAAACTAACTC 59.869 52.381 0.00 0.00 0.00 3.01
2836 3716 1.165270 GCACATCCGGCAAACTAACT 58.835 50.000 0.00 0.00 0.00 2.24
2837 3717 0.170339 GGCACATCCGGCAAACTAAC 59.830 55.000 0.00 0.00 0.00 2.34
2838 3718 0.250945 TGGCACATCCGGCAAACTAA 60.251 50.000 0.00 0.00 38.71 2.24
2839 3719 1.376848 TGGCACATCCGGCAAACTA 59.623 52.632 0.00 0.00 38.71 2.24
2840 3720 2.115052 TGGCACATCCGGCAAACT 59.885 55.556 0.00 0.00 38.71 2.66
2852 3732 5.648092 AGTAAATTTCAGGTAGTCATGGCAC 59.352 40.000 0.00 0.00 0.00 5.01
2853 3733 5.815581 AGTAAATTTCAGGTAGTCATGGCA 58.184 37.500 0.00 0.00 0.00 4.92
2854 3734 6.759497 AAGTAAATTTCAGGTAGTCATGGC 57.241 37.500 0.00 0.00 0.00 4.40
2891 3771 8.649973 AAAAACAGTCGGCACAAATATAAAAA 57.350 26.923 0.00 0.00 0.00 1.94
2947 3827 7.126268 CCTTCTGGAAATTGGGGATTTATCTTT 59.874 37.037 0.00 0.00 38.06 2.52
2977 3857 2.022129 CTCGTTCTGTCGTGGCACC 61.022 63.158 12.86 0.00 0.00 5.01
2985 3865 1.126846 CGCCACAATTCTCGTTCTGTC 59.873 52.381 0.00 0.00 0.00 3.51
2994 3874 0.893727 GGAACACCCGCCACAATTCT 60.894 55.000 0.00 0.00 0.00 2.40
3006 3886 1.481363 GTAGTAGGCCTCTGGAACACC 59.519 57.143 9.68 0.00 0.00 4.16
3031 3911 0.835941 GTCATGGAGATGGACTGCCT 59.164 55.000 0.00 0.00 36.08 4.75
3044 3924 0.391130 ATGGACCAACGTCGTCATGG 60.391 55.000 13.41 13.41 40.17 3.66
3045 3925 0.999406 GATGGACCAACGTCGTCATG 59.001 55.000 15.32 0.00 40.17 3.07
3046 3926 0.108329 GGATGGACCAACGTCGTCAT 60.108 55.000 15.32 0.00 40.17 3.06
3048 3928 0.458025 GAGGATGGACCAACGTCGTC 60.458 60.000 8.47 4.89 40.17 4.20
3049 3929 0.898789 AGAGGATGGACCAACGTCGT 60.899 55.000 16.05 3.99 40.17 4.34
3050 3930 0.246635 AAGAGGATGGACCAACGTCG 59.753 55.000 16.05 0.00 40.17 5.12
3051 3931 2.496470 ACTAAGAGGATGGACCAACGTC 59.504 50.000 14.69 14.69 42.04 4.34
3052 3932 2.537143 ACTAAGAGGATGGACCAACGT 58.463 47.619 0.00 0.00 42.04 3.99
3057 4157 3.686016 TGCAAAACTAAGAGGATGGACC 58.314 45.455 0.00 0.00 39.35 4.46
3058 4158 5.003804 TCTTGCAAAACTAAGAGGATGGAC 58.996 41.667 0.00 0.00 0.00 4.02
3110 4210 0.256752 CATGGACCCTCTGATTGCCA 59.743 55.000 0.00 0.00 0.00 4.92
3126 4226 0.603707 AGCCTCACAACGGTGTCATG 60.604 55.000 1.16 0.00 45.45 3.07
3127 4227 0.108585 AAGCCTCACAACGGTGTCAT 59.891 50.000 1.16 0.00 45.45 3.06
3137 4237 1.374947 GCCTGGTGTAAGCCTCACA 59.625 57.895 0.00 0.00 37.52 3.58
3147 4247 1.498176 GGTTTCTAGGGGCCTGGTGT 61.498 60.000 0.84 0.00 0.00 4.16
3181 4281 4.918360 AGGGGCAGGTGGTGTGGA 62.918 66.667 0.00 0.00 0.00 4.02
3198 4298 4.256983 TGAGAGCATTCTAGAGAAGGGA 57.743 45.455 6.11 0.00 37.48 4.20
3216 4316 2.315925 ACACGGATGCTGGTATTGAG 57.684 50.000 0.00 0.00 0.00 3.02
3220 4320 3.281727 AATCAACACGGATGCTGGTAT 57.718 42.857 0.00 0.00 0.00 2.73
3221 4321 2.779755 AATCAACACGGATGCTGGTA 57.220 45.000 0.00 0.00 0.00 3.25
3222 4322 1.909700 AAATCAACACGGATGCTGGT 58.090 45.000 0.00 0.00 0.00 4.00
3223 4323 2.228582 TGAAAATCAACACGGATGCTGG 59.771 45.455 0.00 0.00 0.00 4.85
3224 4324 3.236816 GTGAAAATCAACACGGATGCTG 58.763 45.455 0.00 0.00 0.00 4.41
3225 4325 2.884012 TGTGAAAATCAACACGGATGCT 59.116 40.909 0.00 0.00 39.52 3.79
3226 4326 3.281341 TGTGAAAATCAACACGGATGC 57.719 42.857 0.00 0.00 39.52 3.91
3227 4327 6.768029 ATTTTGTGAAAATCAACACGGATG 57.232 33.333 0.00 0.00 36.38 3.51
3238 4338 6.352394 CCCCCAGATGATGATTTTGTGAAAAT 60.352 38.462 0.00 0.00 43.43 1.82
3239 4339 5.046448 CCCCCAGATGATGATTTTGTGAAAA 60.046 40.000 0.00 0.00 34.41 2.29
3240 4340 4.467082 CCCCCAGATGATGATTTTGTGAAA 59.533 41.667 0.00 0.00 0.00 2.69
3241 4341 4.025360 CCCCCAGATGATGATTTTGTGAA 58.975 43.478 0.00 0.00 0.00 3.18
3242 4342 3.011595 ACCCCCAGATGATGATTTTGTGA 59.988 43.478 0.00 0.00 0.00 3.58
3243 4343 3.368248 ACCCCCAGATGATGATTTTGTG 58.632 45.455 0.00 0.00 0.00 3.33
3244 4344 3.270433 AGACCCCCAGATGATGATTTTGT 59.730 43.478 0.00 0.00 0.00 2.83
3245 4345 3.887716 GAGACCCCCAGATGATGATTTTG 59.112 47.826 0.00 0.00 0.00 2.44
3246 4346 3.117360 GGAGACCCCCAGATGATGATTTT 60.117 47.826 0.00 0.00 0.00 1.82
3247 4347 2.444766 GGAGACCCCCAGATGATGATTT 59.555 50.000 0.00 0.00 0.00 2.17
3248 4348 2.061061 GGAGACCCCCAGATGATGATT 58.939 52.381 0.00 0.00 0.00 2.57
3249 4349 1.061111 TGGAGACCCCCAGATGATGAT 60.061 52.381 0.00 0.00 0.00 2.45
3250 4350 0.343018 TGGAGACCCCCAGATGATGA 59.657 55.000 0.00 0.00 0.00 2.92
3251 4351 0.471617 GTGGAGACCCCCAGATGATG 59.528 60.000 0.00 0.00 36.78 3.07
3252 4352 0.695803 GGTGGAGACCCCCAGATGAT 60.696 60.000 0.00 0.00 36.78 2.45
3253 4353 1.306997 GGTGGAGACCCCCAGATGA 60.307 63.158 0.00 0.00 36.78 2.92
3254 4354 3.324713 GGTGGAGACCCCCAGATG 58.675 66.667 0.00 0.00 36.78 2.90
3262 4362 1.074951 CTGGGTTTGGGTGGAGACC 59.925 63.158 0.00 0.00 42.27 3.85
3263 4363 1.074951 CCTGGGTTTGGGTGGAGAC 59.925 63.158 0.00 0.00 0.00 3.36
3264 4364 0.699577 TTCCTGGGTTTGGGTGGAGA 60.700 55.000 0.00 0.00 0.00 3.71
3265 4365 0.251341 CTTCCTGGGTTTGGGTGGAG 60.251 60.000 0.00 0.00 0.00 3.86
3266 4366 1.725169 CCTTCCTGGGTTTGGGTGGA 61.725 60.000 0.00 0.00 0.00 4.02
3267 4367 1.228862 CCTTCCTGGGTTTGGGTGG 60.229 63.158 0.00 0.00 0.00 4.61
3268 4368 4.519610 CCTTCCTGGGTTTGGGTG 57.480 61.111 0.00 0.00 0.00 4.61
3277 4377 1.229658 AGACCCTCACCCTTCCTGG 60.230 63.158 0.00 0.00 0.00 4.45
3278 4378 0.838122 ACAGACCCTCACCCTTCCTG 60.838 60.000 0.00 0.00 0.00 3.86
3279 4379 0.104409 AACAGACCCTCACCCTTCCT 60.104 55.000 0.00 0.00 0.00 3.36
3280 4380 0.325272 GAACAGACCCTCACCCTTCC 59.675 60.000 0.00 0.00 0.00 3.46
3281 4381 1.056660 TGAACAGACCCTCACCCTTC 58.943 55.000 0.00 0.00 0.00 3.46
3282 4382 1.518367 TTGAACAGACCCTCACCCTT 58.482 50.000 0.00 0.00 0.00 3.95
3283 4383 1.630878 GATTGAACAGACCCTCACCCT 59.369 52.381 0.00 0.00 0.00 4.34
3284 4384 1.676014 CGATTGAACAGACCCTCACCC 60.676 57.143 0.00 0.00 0.00 4.61
3285 4385 1.676014 CCGATTGAACAGACCCTCACC 60.676 57.143 0.00 0.00 0.00 4.02
3286 4386 1.275291 TCCGATTGAACAGACCCTCAC 59.725 52.381 0.00 0.00 0.00 3.51
3287 4387 1.639722 TCCGATTGAACAGACCCTCA 58.360 50.000 0.00 0.00 0.00 3.86
3288 4388 2.028020 ACTTCCGATTGAACAGACCCTC 60.028 50.000 0.00 0.00 0.00 4.30
3289 4389 1.978580 ACTTCCGATTGAACAGACCCT 59.021 47.619 0.00 0.00 0.00 4.34
3290 4390 2.474410 ACTTCCGATTGAACAGACCC 57.526 50.000 0.00 0.00 0.00 4.46
3291 4391 2.742589 GGAACTTCCGATTGAACAGACC 59.257 50.000 0.00 0.00 0.00 3.85
3292 4392 3.399330 TGGAACTTCCGATTGAACAGAC 58.601 45.455 3.28 0.00 40.17 3.51
3293 4393 3.664107 CTGGAACTTCCGATTGAACAGA 58.336 45.455 3.28 0.00 40.17 3.41
3294 4394 2.160417 GCTGGAACTTCCGATTGAACAG 59.840 50.000 3.28 0.00 40.17 3.16
3295 4395 2.151202 GCTGGAACTTCCGATTGAACA 58.849 47.619 3.28 0.00 40.17 3.18
3296 4396 2.095718 GTGCTGGAACTTCCGATTGAAC 60.096 50.000 3.28 0.00 40.17 3.18
3297 4397 2.151202 GTGCTGGAACTTCCGATTGAA 58.849 47.619 3.28 0.00 40.17 2.69
3298 4398 1.347707 AGTGCTGGAACTTCCGATTGA 59.652 47.619 3.28 0.00 40.17 2.57
3299 4399 1.813513 AGTGCTGGAACTTCCGATTG 58.186 50.000 3.28 0.00 40.17 2.67
3300 4400 2.567615 AGTAGTGCTGGAACTTCCGATT 59.432 45.455 3.28 0.00 40.17 3.34
3301 4401 2.093973 CAGTAGTGCTGGAACTTCCGAT 60.094 50.000 0.00 0.00 40.17 4.18
3302 4402 1.272490 CAGTAGTGCTGGAACTTCCGA 59.728 52.381 0.00 0.00 40.17 4.55
3303 4403 1.714794 CAGTAGTGCTGGAACTTCCG 58.285 55.000 0.00 0.06 40.17 4.30
3312 4412 0.108186 TGGCGATTCCAGTAGTGCTG 60.108 55.000 0.47 0.47 40.72 4.41
3313 4413 2.286826 TGGCGATTCCAGTAGTGCT 58.713 52.632 0.00 0.00 40.72 4.40
3314 4414 4.932789 TGGCGATTCCAGTAGTGC 57.067 55.556 0.00 0.00 40.72 4.40
3321 4421 1.976474 GGCAAAGGTGGCGATTCCA 60.976 57.895 0.00 0.00 44.18 3.53
3322 4422 2.885113 GGCAAAGGTGGCGATTCC 59.115 61.111 0.00 0.00 40.97 3.01
3328 4428 4.043200 GCACTCGGCAAAGGTGGC 62.043 66.667 0.00 0.00 46.67 5.01
3346 4446 2.325082 CCTTTGCCGAGTGTTCCCG 61.325 63.158 0.00 0.00 0.00 5.14
3347 4447 1.971695 CCCTTTGCCGAGTGTTCCC 60.972 63.158 0.00 0.00 0.00 3.97
3348 4448 2.626780 GCCCTTTGCCGAGTGTTCC 61.627 63.158 0.00 0.00 0.00 3.62
3349 4449 2.954611 GCCCTTTGCCGAGTGTTC 59.045 61.111 0.00 0.00 0.00 3.18
3358 4458 1.153647 GCGGTTATTGGCCCTTTGC 60.154 57.895 0.00 0.00 40.16 3.68
3359 4459 1.515487 GGCGGTTATTGGCCCTTTG 59.485 57.895 0.00 0.00 43.64 2.77
3360 4460 2.049767 CGGCGGTTATTGGCCCTTT 61.050 57.895 0.00 0.00 46.73 3.11
3361 4461 2.439519 CGGCGGTTATTGGCCCTT 60.440 61.111 0.00 0.00 46.73 3.95
3362 4462 4.499633 CCGGCGGTTATTGGCCCT 62.500 66.667 19.97 0.00 46.73 5.19
3366 4466 1.138671 CTTTGCCGGCGGTTATTGG 59.861 57.895 28.82 9.40 0.00 3.16
3367 4467 1.516169 GCTTTGCCGGCGGTTATTG 60.516 57.895 28.82 14.84 0.00 1.90
3368 4468 2.706834 GGCTTTGCCGGCGGTTATT 61.707 57.895 28.82 0.00 39.62 1.40
3369 4469 3.138128 GGCTTTGCCGGCGGTTAT 61.138 61.111 28.82 0.00 39.62 1.89
3380 4480 0.385390 AACACTCGGCAAAGGCTTTG 59.615 50.000 30.74 30.74 43.44 2.77
3381 4481 0.385390 CAACACTCGGCAAAGGCTTT 59.615 50.000 6.68 6.68 40.87 3.51
3382 4482 2.032981 CAACACTCGGCAAAGGCTT 58.967 52.632 0.00 0.00 40.87 4.35
3383 4483 2.555547 GCAACACTCGGCAAAGGCT 61.556 57.895 0.00 0.00 40.87 4.58
3384 4484 2.050077 GCAACACTCGGCAAAGGC 60.050 61.111 0.00 0.00 40.13 4.35
3385 4485 1.856265 GAGGCAACACTCGGCAAAGG 61.856 60.000 0.00 0.00 41.41 3.11
3386 4486 1.576421 GAGGCAACACTCGGCAAAG 59.424 57.895 0.00 0.00 41.41 2.77
3387 4487 3.744559 GAGGCAACACTCGGCAAA 58.255 55.556 0.00 0.00 41.41 3.68
3421 4521 2.741486 TTTGCCTGAGGGGTGTACGC 62.741 60.000 0.00 0.00 37.43 4.42
3422 4522 0.953960 GTTTGCCTGAGGGGTGTACG 60.954 60.000 0.00 0.00 37.43 3.67
3423 4523 0.109723 TGTTTGCCTGAGGGGTGTAC 59.890 55.000 0.00 0.00 37.43 2.90
3424 4524 0.847373 TTGTTTGCCTGAGGGGTGTA 59.153 50.000 0.00 0.00 37.43 2.90
3425 4525 0.032615 TTTGTTTGCCTGAGGGGTGT 60.033 50.000 0.00 0.00 37.43 4.16
3426 4526 1.118838 TTTTGTTTGCCTGAGGGGTG 58.881 50.000 0.00 0.00 37.43 4.61
3427 4527 1.872773 TTTTTGTTTGCCTGAGGGGT 58.127 45.000 0.00 0.00 37.43 4.95
3428 4528 2.634453 AGATTTTTGTTTGCCTGAGGGG 59.366 45.455 0.00 0.00 38.36 4.79
3429 4529 3.656559 CAGATTTTTGTTTGCCTGAGGG 58.343 45.455 0.00 0.00 0.00 4.30
3430 4530 3.062042 GCAGATTTTTGTTTGCCTGAGG 58.938 45.455 0.00 0.00 0.00 3.86
3436 4536 2.982470 CTCTCGGCAGATTTTTGTTTGC 59.018 45.455 0.00 0.00 35.87 3.68
3437 4537 2.982470 GCTCTCGGCAGATTTTTGTTTG 59.018 45.455 0.00 0.00 41.35 2.93
3438 4538 2.029918 GGCTCTCGGCAGATTTTTGTTT 60.030 45.455 0.00 0.00 44.01 2.83
3439 4539 1.541588 GGCTCTCGGCAGATTTTTGTT 59.458 47.619 0.00 0.00 44.01 2.83
3440 4540 1.168714 GGCTCTCGGCAGATTTTTGT 58.831 50.000 0.00 0.00 44.01 2.83
3441 4541 1.167851 TGGCTCTCGGCAGATTTTTG 58.832 50.000 0.00 0.00 44.01 2.44
3442 4542 3.650647 TGGCTCTCGGCAGATTTTT 57.349 47.368 0.00 0.00 44.01 1.94
3449 4549 2.110213 ACGTTTTGGCTCTCGGCA 59.890 55.556 0.00 0.00 44.83 5.69
3450 4550 2.556287 CACGTTTTGGCTCTCGGC 59.444 61.111 0.00 0.00 40.90 5.54
3451 4551 2.325082 CCCACGTTTTGGCTCTCGG 61.325 63.158 0.00 0.00 45.37 4.63
3452 4552 2.966309 GCCCACGTTTTGGCTCTCG 61.966 63.158 12.14 0.00 45.37 4.04
3453 4553 2.954611 GCCCACGTTTTGGCTCTC 59.045 61.111 12.14 0.00 45.37 3.20
3457 4557 2.335011 GAGTGCCCACGTTTTGGC 59.665 61.111 12.44 12.44 45.37 4.52
3458 4558 2.637025 CGAGTGCCCACGTTTTGG 59.363 61.111 0.00 0.00 46.47 3.28
3459 4559 2.637025 CCGAGTGCCCACGTTTTG 59.363 61.111 0.00 0.00 36.20 2.44
3460 4560 3.284449 GCCGAGTGCCCACGTTTT 61.284 61.111 0.00 0.00 36.20 2.43
3461 4561 4.555709 TGCCGAGTGCCCACGTTT 62.556 61.111 0.00 0.00 40.16 3.60
3462 4562 4.555709 TTGCCGAGTGCCCACGTT 62.556 61.111 0.00 0.00 40.16 3.99
3463 4563 4.555709 TTTGCCGAGTGCCCACGT 62.556 61.111 0.00 0.00 40.16 4.49
3464 4564 4.025401 GTTTGCCGAGTGCCCACG 62.025 66.667 0.00 0.00 40.16 4.94
3465 4565 2.904866 TGTTTGCCGAGTGCCCAC 60.905 61.111 0.00 0.00 40.16 4.61
3466 4566 2.594303 CTGTTTGCCGAGTGCCCA 60.594 61.111 0.00 0.00 40.16 5.36
3467 4567 1.734388 AAACTGTTTGCCGAGTGCCC 61.734 55.000 4.73 0.00 40.16 5.36
3468 4568 0.594796 CAAACTGTTTGCCGAGTGCC 60.595 55.000 19.13 0.00 40.16 5.01
3469 4569 2.872028 CAAACTGTTTGCCGAGTGC 58.128 52.632 19.13 0.00 41.77 4.40
3477 4577 0.040067 GGCTCTCGGCAAACTGTTTG 60.040 55.000 24.98 24.98 44.01 2.93
3478 4578 0.465460 TGGCTCTCGGCAAACTGTTT 60.465 50.000 0.00 0.00 43.40 2.83
3479 4579 1.148273 TGGCTCTCGGCAAACTGTT 59.852 52.632 0.00 0.00 43.40 3.16
3480 4580 2.828868 TGGCTCTCGGCAAACTGT 59.171 55.556 0.00 0.00 43.40 3.55
3486 4586 2.357034 GTCGTTTGGCTCTCGGCA 60.357 61.111 0.00 0.00 44.83 5.69
3487 4587 3.479269 CGTCGTTTGGCTCTCGGC 61.479 66.667 0.00 0.00 40.90 5.54
3488 4588 3.479269 GCGTCGTTTGGCTCTCGG 61.479 66.667 0.00 0.00 0.00 4.63
3489 4589 3.479269 GGCGTCGTTTGGCTCTCG 61.479 66.667 0.00 0.00 0.00 4.04
3490 4590 2.048127 AGGCGTCGTTTGGCTCTC 60.048 61.111 0.00 0.00 37.80 3.20
3493 4593 2.048127 GAGAGGCGTCGTTTGGCT 60.048 61.111 0.00 0.60 45.97 4.75
3494 4594 3.479269 CGAGAGGCGTCGTTTGGC 61.479 66.667 0.00 0.00 35.14 4.52
3506 4606 8.056571 CGTAAGTTCAATTTATTTAGCCGAGAG 58.943 37.037 0.00 0.00 0.00 3.20
3507 4607 7.010738 CCGTAAGTTCAATTTATTTAGCCGAGA 59.989 37.037 0.00 0.00 0.00 4.04
3508 4608 7.010738 TCCGTAAGTTCAATTTATTTAGCCGAG 59.989 37.037 0.00 0.00 0.00 4.63
3509 4609 6.817641 TCCGTAAGTTCAATTTATTTAGCCGA 59.182 34.615 0.00 0.00 0.00 5.54
3510 4610 6.903479 GTCCGTAAGTTCAATTTATTTAGCCG 59.097 38.462 0.00 0.00 0.00 5.52
3511 4611 6.903479 CGTCCGTAAGTTCAATTTATTTAGCC 59.097 38.462 0.00 0.00 0.00 3.93
3512 4612 6.903479 CCGTCCGTAAGTTCAATTTATTTAGC 59.097 38.462 0.00 0.00 0.00 3.09
3513 4613 6.903479 GCCGTCCGTAAGTTCAATTTATTTAG 59.097 38.462 0.00 0.00 0.00 1.85
3514 4614 6.455380 CGCCGTCCGTAAGTTCAATTTATTTA 60.455 38.462 0.00 0.00 0.00 1.40
3515 4615 5.633927 GCCGTCCGTAAGTTCAATTTATTT 58.366 37.500 0.00 0.00 0.00 1.40
3516 4616 4.201744 CGCCGTCCGTAAGTTCAATTTATT 60.202 41.667 0.00 0.00 0.00 1.40
3517 4617 3.307782 CGCCGTCCGTAAGTTCAATTTAT 59.692 43.478 0.00 0.00 0.00 1.40
3518 4618 2.667481 CGCCGTCCGTAAGTTCAATTTA 59.333 45.455 0.00 0.00 0.00 1.40
3519 4619 1.461897 CGCCGTCCGTAAGTTCAATTT 59.538 47.619 0.00 0.00 0.00 1.82
3520 4620 1.073177 CGCCGTCCGTAAGTTCAATT 58.927 50.000 0.00 0.00 0.00 2.32
3521 4621 0.738412 CCGCCGTCCGTAAGTTCAAT 60.738 55.000 0.00 0.00 34.38 2.57
3522 4622 1.373246 CCGCCGTCCGTAAGTTCAA 60.373 57.895 0.00 0.00 34.38 2.69
3523 4623 2.259204 CCGCCGTCCGTAAGTTCA 59.741 61.111 0.00 0.00 34.38 3.18
3524 4624 1.803117 GTCCGCCGTCCGTAAGTTC 60.803 63.158 0.00 0.00 34.38 3.01
3525 4625 2.259511 GTCCGCCGTCCGTAAGTT 59.740 61.111 0.00 0.00 34.38 2.66
3526 4626 4.107051 CGTCCGCCGTCCGTAAGT 62.107 66.667 0.00 0.00 34.38 2.24
3527 4627 4.842091 CCGTCCGCCGTCCGTAAG 62.842 72.222 0.00 0.00 34.38 2.34
3532 4632 4.570663 CATCTCCGTCCGCCGTCC 62.571 72.222 0.00 0.00 33.66 4.79
3533 4633 4.570663 CCATCTCCGTCCGCCGTC 62.571 72.222 0.00 0.00 33.66 4.79
3539 4639 4.899239 CTGGCGCCATCTCCGTCC 62.899 72.222 32.87 0.00 0.00 4.79
3557 4657 0.314935 GACAAAGGTGTGCCACATGG 59.685 55.000 0.00 0.00 38.41 3.66
3558 4658 0.040157 CGACAAAGGTGTGCCACATG 60.040 55.000 0.00 0.00 38.41 3.21
3559 4659 0.179032 TCGACAAAGGTGTGCCACAT 60.179 50.000 0.00 0.00 38.41 3.21
3560 4660 0.813610 CTCGACAAAGGTGTGCCACA 60.814 55.000 0.00 0.00 38.41 4.17
3561 4661 0.814010 ACTCGACAAAGGTGTGCCAC 60.814 55.000 0.00 0.00 38.41 5.01
3562 4662 0.813610 CACTCGACAAAGGTGTGCCA 60.814 55.000 0.00 0.00 38.41 4.92
3563 4663 1.941812 CACTCGACAAAGGTGTGCC 59.058 57.895 0.00 0.00 38.41 5.01
3564 4664 1.279840 GCACTCGACAAAGGTGTGC 59.720 57.895 7.77 7.77 45.23 4.57
3565 4665 1.507141 GGGCACTCGACAAAGGTGTG 61.507 60.000 4.00 0.00 38.41 3.82
3566 4666 1.227853 GGGCACTCGACAAAGGTGT 60.228 57.895 4.00 0.00 42.10 4.16
3567 4667 1.966451 GGGGCACTCGACAAAGGTG 60.966 63.158 0.00 0.00 0.00 4.00
3568 4668 2.113243 GAGGGGCACTCGACAAAGGT 62.113 60.000 0.00 0.00 36.29 3.50
3569 4669 1.376037 GAGGGGCACTCGACAAAGG 60.376 63.158 0.00 0.00 36.29 3.11
3570 4670 4.285851 GAGGGGCACTCGACAAAG 57.714 61.111 0.00 0.00 36.29 2.77
3577 4677 0.676151 CTTTGCAGAGAGGGGCACTC 60.676 60.000 9.25 9.25 46.98 3.51
3578 4678 1.377994 CTTTGCAGAGAGGGGCACT 59.622 57.895 0.00 0.00 40.23 4.40
3579 4679 2.338785 GCTTTGCAGAGAGGGGCAC 61.339 63.158 8.73 0.00 40.23 5.01
3580 4680 2.034687 GCTTTGCAGAGAGGGGCA 59.965 61.111 8.73 0.00 38.46 5.36
3581 4681 3.130160 CGCTTTGCAGAGAGGGGC 61.130 66.667 8.73 0.00 0.00 5.80
3582 4682 1.003355 TTCGCTTTGCAGAGAGGGG 60.003 57.895 8.73 0.00 29.52 4.79
3583 4683 1.301677 GGTTCGCTTTGCAGAGAGGG 61.302 60.000 8.73 6.50 29.52 4.30
3584 4684 0.603707 TGGTTCGCTTTGCAGAGAGG 60.604 55.000 8.73 0.00 29.52 3.69
3585 4685 0.514691 GTGGTTCGCTTTGCAGAGAG 59.485 55.000 8.73 4.86 29.52 3.20
3586 4686 0.106708 AGTGGTTCGCTTTGCAGAGA 59.893 50.000 8.73 0.00 0.00 3.10
3587 4687 1.795768 TAGTGGTTCGCTTTGCAGAG 58.204 50.000 0.00 0.00 0.00 3.35
3588 4688 2.143122 CTTAGTGGTTCGCTTTGCAGA 58.857 47.619 0.00 0.00 0.00 4.26
3589 4689 2.143122 TCTTAGTGGTTCGCTTTGCAG 58.857 47.619 0.00 0.00 0.00 4.41
3590 4690 2.248280 TCTTAGTGGTTCGCTTTGCA 57.752 45.000 0.00 0.00 0.00 4.08
3591 4691 2.665794 GCTTCTTAGTGGTTCGCTTTGC 60.666 50.000 0.00 0.00 0.00 3.68
3592 4692 2.411547 CGCTTCTTAGTGGTTCGCTTTG 60.412 50.000 0.00 0.00 0.00 2.77
3593 4693 1.798813 CGCTTCTTAGTGGTTCGCTTT 59.201 47.619 0.00 0.00 0.00 3.51
3594 4694 1.429463 CGCTTCTTAGTGGTTCGCTT 58.571 50.000 0.00 0.00 0.00 4.68
3595 4695 0.389948 CCGCTTCTTAGTGGTTCGCT 60.390 55.000 0.00 0.00 45.29 4.93
3596 4696 2.079049 CCGCTTCTTAGTGGTTCGC 58.921 57.895 0.00 0.00 45.29 4.70
3602 4702 1.374252 ACGTGGCCGCTTCTTAGTG 60.374 57.895 15.69 0.00 37.70 2.74
3603 4703 1.374252 CACGTGGCCGCTTCTTAGT 60.374 57.895 15.69 0.00 37.70 2.24
3604 4704 2.740714 GCACGTGGCCGCTTCTTAG 61.741 63.158 18.88 0.00 37.70 2.18
3605 4705 2.740826 GCACGTGGCCGCTTCTTA 60.741 61.111 18.88 0.00 37.70 2.10
3619 4719 0.391661 ACATGTCCAGTCATCGGCAC 60.392 55.000 0.00 0.00 0.00 5.01
3620 4720 0.391528 CACATGTCCAGTCATCGGCA 60.392 55.000 0.00 0.00 0.00 5.69
3621 4721 1.091771 CCACATGTCCAGTCATCGGC 61.092 60.000 0.00 0.00 0.00 5.54
3622 4722 0.462581 CCCACATGTCCAGTCATCGG 60.463 60.000 0.00 0.00 0.00 4.18
3623 4723 0.250234 ACCCACATGTCCAGTCATCG 59.750 55.000 0.00 0.00 0.00 3.84
3624 4724 2.029838 GACCCACATGTCCAGTCATC 57.970 55.000 12.39 0.00 0.00 2.92
3637 4737 2.990479 CCTAGGCTGTGGACCCAC 59.010 66.667 12.07 12.07 46.33 4.61
3638 4738 3.009115 GCCTAGGCTGTGGACCCA 61.009 66.667 27.17 0.00 38.26 4.51
3654 4754 3.376918 GCAAAGGTGGCCCTCAGC 61.377 66.667 0.00 0.00 41.56 4.26
3655 4755 2.677875 GGCAAAGGTGGCCCTCAG 60.678 66.667 0.00 0.00 45.87 3.35
3661 4761 2.626780 GGTTCTCGGCAAAGGTGGC 61.627 63.158 0.00 0.00 46.67 5.01
3662 4762 2.325082 CGGTTCTCGGCAAAGGTGG 61.325 63.158 0.00 0.00 34.75 4.61
3663 4763 2.966309 GCGGTTCTCGGCAAAGGTG 61.966 63.158 0.00 0.00 39.26 4.00
3664 4764 2.668550 GCGGTTCTCGGCAAAGGT 60.669 61.111 0.00 0.00 39.26 3.50
3665 4765 2.358737 AGCGGTTCTCGGCAAAGG 60.359 61.111 0.00 0.00 41.39 3.11
3666 4766 1.355066 GAGAGCGGTTCTCGGCAAAG 61.355 60.000 6.10 0.00 46.44 2.77
3667 4767 1.374252 GAGAGCGGTTCTCGGCAAA 60.374 57.895 6.10 0.00 46.44 3.68
3668 4768 2.261671 GAGAGCGGTTCTCGGCAA 59.738 61.111 6.10 0.00 46.44 4.52
3680 4780 1.666189 GTGGTTATCTTTGCCGAGAGC 59.334 52.381 0.00 0.00 44.14 4.09
3681 4781 3.252974 AGTGGTTATCTTTGCCGAGAG 57.747 47.619 0.00 0.00 0.00 3.20
3682 4782 4.464951 TCTTAGTGGTTATCTTTGCCGAGA 59.535 41.667 0.00 0.00 0.00 4.04
3683 4783 4.755411 TCTTAGTGGTTATCTTTGCCGAG 58.245 43.478 0.00 0.00 0.00 4.63
3684 4784 4.811969 TCTTAGTGGTTATCTTTGCCGA 57.188 40.909 0.00 0.00 0.00 5.54
3685 4785 4.935808 ACTTCTTAGTGGTTATCTTTGCCG 59.064 41.667 0.00 0.00 31.99 5.69
3686 4786 6.183309 CACTTCTTAGTGGTTATCTTTGCC 57.817 41.667 0.00 0.00 46.52 4.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.