Multiple sequence alignment - TraesCS5D01G510600

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G510600 chr5D 100.000 2556 0 0 1 2556 535592149 535589594 0.000000e+00 4721.0
1 TraesCS5D01G510600 chr5D 97.816 412 9 0 2145 2556 564934565 564934976 0.000000e+00 712.0
2 TraesCS5D01G510600 chr5D 96.651 418 10 4 2142 2556 520836305 520835889 0.000000e+00 691.0
3 TraesCS5D01G510600 chr5D 96.635 416 10 3 2145 2556 494035718 494036133 0.000000e+00 688.0
4 TraesCS5D01G510600 chr5D 81.726 394 43 20 1769 2144 302170766 302170384 4.130000e-78 302.0
5 TraesCS5D01G510600 chr5D 84.758 269 19 6 954 1200 535525724 535525456 1.520000e-62 250.0
6 TraesCS5D01G510600 chr5D 91.892 74 5 1 558 631 35306141 35306069 4.500000e-18 102.0
7 TraesCS5D01G510600 chr4A 93.347 1518 87 8 639 2143 636376122 636377638 0.000000e+00 2231.0
8 TraesCS5D01G510600 chr4A 89.065 567 24 7 7 560 526638870 526638329 0.000000e+00 669.0
9 TraesCS5D01G510600 chr4A 81.467 518 69 18 1645 2144 713999417 713998909 1.420000e-107 399.0
10 TraesCS5D01G510600 chr4A 90.419 167 12 1 952 1118 636570365 636570527 1.540000e-52 217.0
11 TraesCS5D01G510600 chr5B 94.181 1014 43 7 639 1638 676173683 676172672 0.000000e+00 1531.0
12 TraesCS5D01G510600 chr5B 90.038 522 37 7 1635 2144 676172298 676171780 0.000000e+00 662.0
13 TraesCS5D01G510600 chr5B 84.192 563 75 11 1 560 560748674 560748123 3.740000e-148 534.0
14 TraesCS5D01G510600 chr2D 96.882 417 8 3 2145 2556 391486179 391486595 0.000000e+00 693.0
15 TraesCS5D01G510600 chr2D 96.651 418 10 3 2143 2556 555336625 555337042 0.000000e+00 691.0
16 TraesCS5D01G510600 chr2D 96.659 419 7 4 2145 2556 7695030 7694612 0.000000e+00 689.0
17 TraesCS5D01G510600 chr2D 95.571 429 14 4 2133 2556 43464615 43465043 0.000000e+00 682.0
18 TraesCS5D01G510600 chr2D 85.119 504 44 19 1667 2144 102865263 102864765 1.060000e-133 486.0
19 TraesCS5D01G510600 chr2D 82.061 524 65 11 1644 2140 589507582 589508103 1.090000e-113 420.0
20 TraesCS5D01G510600 chr2D 80.691 492 68 20 1644 2113 106356556 106357042 8.700000e-95 357.0
21 TraesCS5D01G510600 chr2D 84.677 124 16 3 2022 2144 3032396 3032275 1.240000e-23 121.0
22 TraesCS5D01G510600 chr2D 86.567 67 7 2 574 640 82659698 82659634 3.530000e-09 73.1
23 TraesCS5D01G510600 chr1D 96.845 412 11 1 2145 2556 25409192 25408783 0.000000e+00 688.0
24 TraesCS5D01G510600 chr1D 84.656 567 70 10 1 559 485248086 485248643 1.340000e-152 549.0
25 TraesCS5D01G510600 chr1D 83.681 527 58 18 39 560 389870179 389869676 2.980000e-129 472.0
26 TraesCS5D01G510600 chr1D 95.312 64 2 1 558 621 421439010 421438948 1.620000e-17 100.0
27 TraesCS5D01G510600 chr1D 93.939 66 3 1 558 623 39998371 39998307 5.820000e-17 99.0
28 TraesCS5D01G510600 chr6B 88.850 565 53 6 1 559 454767159 454767719 0.000000e+00 686.0
29 TraesCS5D01G510600 chr6B 82.069 580 74 12 1 560 489728932 489729501 3.850000e-128 468.0
30 TraesCS5D01G510600 chr3D 96.200 421 12 3 2140 2556 26759283 26758863 0.000000e+00 686.0
31 TraesCS5D01G510600 chr3D 85.824 522 55 15 3 518 349955574 349956082 1.040000e-148 536.0
32 TraesCS5D01G510600 chr3D 100.000 32 0 0 609 640 77323125 77323156 2.750000e-05 60.2
33 TraesCS5D01G510600 chr6A 88.869 566 44 16 1 560 457405767 457405215 0.000000e+00 678.0
34 TraesCS5D01G510600 chr3B 84.725 563 72 11 1 560 561032197 561032748 3.720000e-153 551.0
35 TraesCS5D01G510600 chr3B 84.369 563 74 11 1 560 173564778 173564227 8.050000e-150 540.0
36 TraesCS5D01G510600 chr3B 90.361 83 7 1 558 640 763954361 763954442 9.670000e-20 108.0
37 TraesCS5D01G510600 chr7D 94.620 316 17 0 1 316 619079748 619080063 8.220000e-135 490.0
38 TraesCS5D01G510600 chr7D 81.766 521 68 16 1645 2143 71843765 71844280 6.580000e-111 411.0
39 TraesCS5D01G510600 chr7D 79.732 523 72 13 1652 2144 160655632 160655114 5.230000e-92 348.0
40 TraesCS5D01G510600 chr3A 92.899 338 23 1 1 338 50983611 50983275 8.220000e-135 490.0
41 TraesCS5D01G510600 chr1A 81.583 581 75 16 1 559 59693643 59694213 3.880000e-123 451.0
42 TraesCS5D01G510600 chr1A 81.625 517 63 18 1637 2128 572220781 572220272 1.420000e-107 399.0
43 TraesCS5D01G510600 chr1A 84.375 64 10 0 577 640 449146196 449146133 2.120000e-06 63.9
44 TraesCS5D01G510600 chr6D 82.375 522 61 13 1645 2144 418458433 418458945 2.350000e-115 425.0
45 TraesCS5D01G510600 chr6D 81.250 304 34 13 1862 2144 452122053 452122354 9.200000e-55 224.0
46 TraesCS5D01G510600 chr5A 79.648 511 69 27 1664 2144 567529835 567530340 4.070000e-88 335.0
47 TraesCS5D01G510600 chrUn 77.158 556 60 40 1644 2144 29856681 29856138 7.010000e-66 261.0
48 TraesCS5D01G510600 chr4D 96.386 83 2 1 558 640 29657744 29657663 4.440000e-28 135.0
49 TraesCS5D01G510600 chr7B 85.124 121 12 5 2024 2140 44792267 44792385 4.470000e-23 119.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G510600 chr5D 535589594 535592149 2555 True 4721.0 4721 100.0000 1 2556 1 chr5D.!!$R5 2555
1 TraesCS5D01G510600 chr4A 636376122 636377638 1516 False 2231.0 2231 93.3470 639 2143 1 chr4A.!!$F1 1504
2 TraesCS5D01G510600 chr4A 526638329 526638870 541 True 669.0 669 89.0650 7 560 1 chr4A.!!$R1 553
3 TraesCS5D01G510600 chr4A 713998909 713999417 508 True 399.0 399 81.4670 1645 2144 1 chr4A.!!$R2 499
4 TraesCS5D01G510600 chr5B 676171780 676173683 1903 True 1096.5 1531 92.1095 639 2144 2 chr5B.!!$R2 1505
5 TraesCS5D01G510600 chr5B 560748123 560748674 551 True 534.0 534 84.1920 1 560 1 chr5B.!!$R1 559
6 TraesCS5D01G510600 chr2D 589507582 589508103 521 False 420.0 420 82.0610 1644 2140 1 chr2D.!!$F5 496
7 TraesCS5D01G510600 chr1D 485248086 485248643 557 False 549.0 549 84.6560 1 559 1 chr1D.!!$F1 558
8 TraesCS5D01G510600 chr1D 389869676 389870179 503 True 472.0 472 83.6810 39 560 1 chr1D.!!$R3 521
9 TraesCS5D01G510600 chr6B 454767159 454767719 560 False 686.0 686 88.8500 1 559 1 chr6B.!!$F1 558
10 TraesCS5D01G510600 chr6B 489728932 489729501 569 False 468.0 468 82.0690 1 560 1 chr6B.!!$F2 559
11 TraesCS5D01G510600 chr3D 349955574 349956082 508 False 536.0 536 85.8240 3 518 1 chr3D.!!$F2 515
12 TraesCS5D01G510600 chr6A 457405215 457405767 552 True 678.0 678 88.8690 1 560 1 chr6A.!!$R1 559
13 TraesCS5D01G510600 chr3B 561032197 561032748 551 False 551.0 551 84.7250 1 560 1 chr3B.!!$F1 559
14 TraesCS5D01G510600 chr3B 173564227 173564778 551 True 540.0 540 84.3690 1 560 1 chr3B.!!$R1 559
15 TraesCS5D01G510600 chr7D 71843765 71844280 515 False 411.0 411 81.7660 1645 2143 1 chr7D.!!$F1 498
16 TraesCS5D01G510600 chr7D 160655114 160655632 518 True 348.0 348 79.7320 1652 2144 1 chr7D.!!$R1 492
17 TraesCS5D01G510600 chr1A 59693643 59694213 570 False 451.0 451 81.5830 1 559 1 chr1A.!!$F1 558
18 TraesCS5D01G510600 chr1A 572220272 572220781 509 True 399.0 399 81.6250 1637 2128 1 chr1A.!!$R2 491
19 TraesCS5D01G510600 chr6D 418458433 418458945 512 False 425.0 425 82.3750 1645 2144 1 chr6D.!!$F1 499
20 TraesCS5D01G510600 chr5A 567529835 567530340 505 False 335.0 335 79.6480 1664 2144 1 chr5A.!!$F1 480
21 TraesCS5D01G510600 chrUn 29856138 29856681 543 True 261.0 261 77.1580 1644 2144 1 chrUn.!!$R1 500

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
574 618 0.454957 GTGCATGCGTACAAGCCAAG 60.455 55.0 14.09 0.0 39.76 3.61 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2363 2878 0.107945 CTAGCCCCTGAACAGCTGAC 60.108 60.0 23.35 14.31 37.45 3.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 2.887151 ACCACTCCAAGCTTTGCTAT 57.113 45.000 0.00 0.00 38.25 2.97
144 149 3.712016 AAGAGAGAGAAAAAGGAGGCC 57.288 47.619 0.00 0.00 0.00 5.19
162 167 2.438434 GTGAATGGCGTGGAGGGG 60.438 66.667 0.00 0.00 0.00 4.79
380 410 4.112341 GCGAGTACGGCGACTGGT 62.112 66.667 16.62 0.00 40.15 4.00
428 468 3.055719 CAAAGCGTCCATGGCGGT 61.056 61.111 21.95 21.95 42.04 5.68
429 469 3.055719 AAAGCGTCCATGGCGGTG 61.056 61.111 26.10 10.13 40.07 4.94
430 470 3.842925 AAAGCGTCCATGGCGGTGT 62.843 57.895 26.10 20.70 40.07 4.16
431 471 4.760047 AGCGTCCATGGCGGTGTC 62.760 66.667 25.24 12.06 38.68 3.67
433 473 4.386951 CGTCCATGGCGGTGTCCA 62.387 66.667 17.50 0.00 40.97 4.02
434 474 2.436646 GTCCATGGCGGTGTCCAG 60.437 66.667 6.96 0.00 39.89 3.86
497 541 3.624326 TGCAAAAAGGTTGATCTGACG 57.376 42.857 0.00 0.00 0.00 4.35
498 542 2.293122 TGCAAAAAGGTTGATCTGACGG 59.707 45.455 0.00 0.00 0.00 4.79
505 549 1.002624 TTGATCTGACGGGGTTGGC 60.003 57.895 0.00 0.00 0.00 4.52
568 612 3.427425 GCCGGTGCATGCGTACAA 61.427 61.111 14.09 0.00 37.47 2.41
569 613 2.784596 CCGGTGCATGCGTACAAG 59.215 61.111 14.09 4.74 0.00 3.16
570 614 2.098298 CGGTGCATGCGTACAAGC 59.902 61.111 14.09 3.52 40.89 4.01
571 615 2.485122 GGTGCATGCGTACAAGCC 59.515 61.111 14.09 2.69 39.76 4.35
572 616 2.331893 GGTGCATGCGTACAAGCCA 61.332 57.895 14.09 0.00 39.76 4.75
573 617 1.578926 GTGCATGCGTACAAGCCAA 59.421 52.632 14.09 0.00 39.76 4.52
574 618 0.454957 GTGCATGCGTACAAGCCAAG 60.455 55.000 14.09 0.00 39.76 3.61
575 619 1.137404 GCATGCGTACAAGCCAAGG 59.863 57.895 0.00 0.00 34.44 3.61
576 620 1.137404 CATGCGTACAAGCCAAGGC 59.863 57.895 2.02 2.02 42.33 4.35
586 630 3.435186 GCCAAGGCTCGAACCTGC 61.435 66.667 8.44 4.71 39.93 4.85
587 631 3.121030 CCAAGGCTCGAACCTGCG 61.121 66.667 8.44 2.83 39.93 5.18
588 632 2.357517 CAAGGCTCGAACCTGCGT 60.358 61.111 8.44 0.00 39.93 5.24
589 633 2.048127 AAGGCTCGAACCTGCGTC 60.048 61.111 8.44 0.00 39.93 5.19
590 634 3.916392 AAGGCTCGAACCTGCGTCG 62.916 63.158 8.44 0.00 39.93 5.12
605 649 3.986006 TCGGCCACGAGACACACC 61.986 66.667 2.24 0.00 45.59 4.16
609 653 3.991051 CCACGAGACACACCGCCT 61.991 66.667 0.00 0.00 0.00 5.52
610 654 2.430921 CACGAGACACACCGCCTC 60.431 66.667 0.00 0.00 0.00 4.70
613 657 4.057428 GAGACACACCGCCTCGCT 62.057 66.667 0.00 0.00 0.00 4.93
614 658 4.363990 AGACACACCGCCTCGCTG 62.364 66.667 0.00 0.00 0.00 5.18
660 704 7.704271 TCCACTGTGAAGATAAGAATACGTAG 58.296 38.462 9.86 0.00 0.00 3.51
776 820 7.065563 GGTCATGATATCTTATGGATGCACTTC 59.934 40.741 0.00 0.00 35.98 3.01
780 824 8.066612 TGATATCTTATGGATGCACTTCGATA 57.933 34.615 3.98 0.00 35.98 2.92
785 829 7.093354 TCTTATGGATGCACTTCGATATCTTC 58.907 38.462 0.34 0.00 0.00 2.87
830 876 5.353956 CACGTCATTTCATATCCTTTGGACA 59.646 40.000 0.00 0.00 32.98 4.02
856 902 4.318332 TGTGTTATCACTCTGGCTTTCAG 58.682 43.478 5.57 0.00 44.14 3.02
867 913 1.600916 GCTTTCAGTTGGGACCGCT 60.601 57.895 0.00 0.00 0.00 5.52
988 1044 0.687354 TTGTCCCTCTGGCTCTTGTC 59.313 55.000 0.00 0.00 0.00 3.18
1039 1095 3.120511 GGTCTGTCATCGCTTGTTTTCTC 60.121 47.826 0.00 0.00 0.00 2.87
1242 1300 9.122779 TCAAATATGATGTTGATACAGATTGCA 57.877 29.630 0.00 0.00 37.77 4.08
1286 1344 1.647346 TCGTACCGCTTTTATGCAGG 58.353 50.000 0.00 0.00 34.52 4.85
1308 1367 5.243730 AGGGTTGGAAAATCATGTGTTACAG 59.756 40.000 0.00 0.00 0.00 2.74
1316 1375 7.867403 GGAAAATCATGTGTTACAGTCAATGTT 59.133 33.333 0.00 0.00 39.96 2.71
1453 1512 5.045797 GTGGAAGGGTAAGAAGGTCTACAAT 60.046 44.000 0.00 0.00 0.00 2.71
1462 1521 3.910627 AGAAGGTCTACAATCCTTGGTGT 59.089 43.478 1.04 0.00 43.12 4.16
1607 1666 6.779049 ACTGATTTATGCATGGGATTGTATGT 59.221 34.615 10.16 0.00 0.00 2.29
1727 2175 9.859427 ACAATACTCACCATGTTTCAAAATATG 57.141 29.630 5.51 5.51 37.29 1.78
2044 2558 3.316071 TCGTGTTATCCGCTAACCAAA 57.684 42.857 4.33 0.00 39.23 3.28
2076 2590 1.654023 GGGGAAATTTCTGCGTCGGG 61.654 60.000 17.42 0.00 0.00 5.14
2118 2632 5.130311 TGGTGCTACAATATCACATAGTGGT 59.870 40.000 0.00 0.00 35.30 4.16
2144 2659 3.757836 TTTTTAGGTGGTGGAGGGC 57.242 52.632 0.00 0.00 0.00 5.19
2145 2660 0.854218 TTTTTAGGTGGTGGAGGGCA 59.146 50.000 0.00 0.00 0.00 5.36
2146 2661 0.111639 TTTTAGGTGGTGGAGGGCAC 59.888 55.000 0.00 0.00 0.00 5.01
2147 2662 0.770557 TTTAGGTGGTGGAGGGCACT 60.771 55.000 0.00 0.00 0.00 4.40
2148 2663 0.117541 TTAGGTGGTGGAGGGCACTA 59.882 55.000 0.00 0.00 0.00 2.74
2149 2664 0.117541 TAGGTGGTGGAGGGCACTAA 59.882 55.000 0.00 0.00 0.00 2.24
2150 2665 0.550147 AGGTGGTGGAGGGCACTAAT 60.550 55.000 0.00 0.00 0.00 1.73
2151 2666 1.209621 GGTGGTGGAGGGCACTAATA 58.790 55.000 0.00 0.00 0.00 0.98
2152 2667 1.141053 GGTGGTGGAGGGCACTAATAG 59.859 57.143 0.00 0.00 0.00 1.73
2153 2668 2.116238 GTGGTGGAGGGCACTAATAGA 58.884 52.381 0.00 0.00 0.00 1.98
2154 2669 2.504175 GTGGTGGAGGGCACTAATAGAA 59.496 50.000 0.00 0.00 0.00 2.10
2155 2670 3.054655 GTGGTGGAGGGCACTAATAGAAA 60.055 47.826 0.00 0.00 0.00 2.52
2156 2671 3.589735 TGGTGGAGGGCACTAATAGAAAA 59.410 43.478 0.00 0.00 0.00 2.29
2157 2672 4.043561 TGGTGGAGGGCACTAATAGAAAAA 59.956 41.667 0.00 0.00 0.00 1.94
2158 2673 4.640647 GGTGGAGGGCACTAATAGAAAAAG 59.359 45.833 0.00 0.00 0.00 2.27
2159 2674 4.640647 GTGGAGGGCACTAATAGAAAAAGG 59.359 45.833 0.00 0.00 0.00 3.11
2160 2675 4.207955 GGAGGGCACTAATAGAAAAAGGG 58.792 47.826 0.00 0.00 0.00 3.95
2161 2676 3.632333 AGGGCACTAATAGAAAAAGGGC 58.368 45.455 0.00 0.00 38.98 5.19
2165 2680 5.598416 GCACTAATAGAAAAAGGGCCATT 57.402 39.130 6.18 0.00 33.42 3.16
2166 2681 5.977635 GCACTAATAGAAAAAGGGCCATTT 58.022 37.500 10.16 10.16 33.42 2.32
2167 2682 5.812127 GCACTAATAGAAAAAGGGCCATTTG 59.188 40.000 17.44 3.54 33.42 2.32
2168 2683 6.574269 GCACTAATAGAAAAAGGGCCATTTGT 60.574 38.462 17.44 11.46 33.42 2.83
2169 2684 7.035612 CACTAATAGAAAAAGGGCCATTTGTC 58.964 38.462 22.82 22.82 0.00 3.18
2170 2685 5.420725 AATAGAAAAAGGGCCATTTGTCC 57.579 39.130 25.73 13.74 28.13 4.02
2171 2686 1.977854 AGAAAAAGGGCCATTTGTCCC 59.022 47.619 25.73 11.52 42.94 4.46
2172 2687 1.696884 GAAAAAGGGCCATTTGTCCCA 59.303 47.619 20.30 0.00 45.07 4.37
2173 2688 1.055849 AAAAGGGCCATTTGTCCCAC 58.944 50.000 17.44 0.00 45.07 4.61
2174 2689 0.190815 AAAGGGCCATTTGTCCCACT 59.809 50.000 15.86 0.00 45.07 4.00
2175 2690 0.190815 AAGGGCCATTTGTCCCACTT 59.809 50.000 6.18 0.00 45.07 3.16
2176 2691 0.251787 AGGGCCATTTGTCCCACTTC 60.252 55.000 6.18 0.00 45.07 3.01
2177 2692 0.541764 GGGCCATTTGTCCCACTTCA 60.542 55.000 4.39 0.00 42.18 3.02
2178 2693 1.560505 GGCCATTTGTCCCACTTCAT 58.439 50.000 0.00 0.00 0.00 2.57
2179 2694 2.622977 GGGCCATTTGTCCCACTTCATA 60.623 50.000 4.39 0.00 42.18 2.15
2180 2695 3.096092 GGCCATTTGTCCCACTTCATAA 58.904 45.455 0.00 0.00 0.00 1.90
2181 2696 3.131046 GGCCATTTGTCCCACTTCATAAG 59.869 47.826 0.00 0.00 0.00 1.73
2182 2697 3.131046 GCCATTTGTCCCACTTCATAAGG 59.869 47.826 0.00 0.00 0.00 2.69
2183 2698 3.131046 CCATTTGTCCCACTTCATAAGGC 59.869 47.826 0.00 0.00 0.00 4.35
2184 2699 2.507407 TTGTCCCACTTCATAAGGCC 57.493 50.000 0.00 0.00 0.00 5.19
2185 2700 0.623723 TGTCCCACTTCATAAGGCCC 59.376 55.000 0.00 0.00 0.00 5.80
2186 2701 0.623723 GTCCCACTTCATAAGGCCCA 59.376 55.000 0.00 0.00 0.00 5.36
2187 2702 1.215423 GTCCCACTTCATAAGGCCCAT 59.785 52.381 0.00 0.00 0.00 4.00
2188 2703 1.494721 TCCCACTTCATAAGGCCCATC 59.505 52.381 0.00 0.00 0.00 3.51
2189 2704 1.496429 CCCACTTCATAAGGCCCATCT 59.504 52.381 0.00 0.00 0.00 2.90
2190 2705 2.579873 CCACTTCATAAGGCCCATCTG 58.420 52.381 0.00 0.00 0.00 2.90
2191 2706 2.092212 CCACTTCATAAGGCCCATCTGT 60.092 50.000 0.00 0.00 0.00 3.41
2192 2707 3.209410 CACTTCATAAGGCCCATCTGTC 58.791 50.000 0.00 0.00 0.00 3.51
2193 2708 2.173569 ACTTCATAAGGCCCATCTGTCC 59.826 50.000 0.00 0.00 0.00 4.02
2194 2709 1.140312 TCATAAGGCCCATCTGTCCC 58.860 55.000 0.00 0.00 0.00 4.46
2195 2710 0.250467 CATAAGGCCCATCTGTCCCG 60.250 60.000 0.00 0.00 0.00 5.14
2196 2711 1.418908 ATAAGGCCCATCTGTCCCGG 61.419 60.000 0.00 0.00 0.00 5.73
2197 2712 2.833151 TAAGGCCCATCTGTCCCGGT 62.833 60.000 0.00 0.00 0.00 5.28
2198 2713 3.728373 GGCCCATCTGTCCCGGTT 61.728 66.667 0.00 0.00 0.00 4.44
2199 2714 2.438434 GCCCATCTGTCCCGGTTG 60.438 66.667 0.00 0.00 0.00 3.77
2200 2715 2.272146 CCCATCTGTCCCGGTTGG 59.728 66.667 0.00 0.00 31.38 3.77
2218 2733 1.605992 GGGAACCGGGACTAAAGGG 59.394 63.158 6.32 0.00 40.86 3.95
2219 2734 1.203441 GGGAACCGGGACTAAAGGGT 61.203 60.000 6.32 0.00 40.86 4.34
2220 2735 0.251354 GGAACCGGGACTAAAGGGTC 59.749 60.000 6.32 0.00 40.88 4.46
2221 2736 0.108472 GAACCGGGACTAAAGGGTCG 60.108 60.000 6.32 0.00 37.12 4.79
2222 2737 0.833409 AACCGGGACTAAAGGGTCGT 60.833 55.000 6.32 0.00 37.12 4.34
2223 2738 0.833409 ACCGGGACTAAAGGGTCGTT 60.833 55.000 6.32 0.00 37.12 3.85
2224 2739 1.185315 CCGGGACTAAAGGGTCGTTA 58.815 55.000 0.00 0.00 37.12 3.18
2225 2740 1.134995 CCGGGACTAAAGGGTCGTTAC 60.135 57.143 0.00 0.00 37.12 2.50
2226 2741 1.821136 CGGGACTAAAGGGTCGTTACT 59.179 52.381 0.00 0.00 37.12 2.24
2227 2742 3.016736 CGGGACTAAAGGGTCGTTACTA 58.983 50.000 0.00 0.00 37.12 1.82
2228 2743 3.443681 CGGGACTAAAGGGTCGTTACTAA 59.556 47.826 0.00 0.00 37.12 2.24
2229 2744 4.098501 CGGGACTAAAGGGTCGTTACTAAT 59.901 45.833 0.00 0.00 37.12 1.73
2230 2745 5.354767 GGGACTAAAGGGTCGTTACTAATG 58.645 45.833 0.00 0.00 37.12 1.90
2231 2746 4.807834 GGACTAAAGGGTCGTTACTAATGC 59.192 45.833 0.00 0.00 37.12 3.56
2232 2747 4.763073 ACTAAAGGGTCGTTACTAATGCC 58.237 43.478 0.00 0.00 0.00 4.40
2233 2748 3.994931 AAAGGGTCGTTACTAATGCCT 57.005 42.857 0.00 0.00 0.00 4.75
2234 2749 5.658190 ACTAAAGGGTCGTTACTAATGCCTA 59.342 40.000 0.00 0.00 0.00 3.93
2235 2750 4.667519 AAGGGTCGTTACTAATGCCTAG 57.332 45.455 0.00 0.00 0.00 3.02
2236 2751 2.963782 AGGGTCGTTACTAATGCCTAGG 59.036 50.000 3.67 3.67 31.14 3.02
2237 2752 2.547430 GGGTCGTTACTAATGCCTAGGC 60.547 54.545 27.71 27.71 42.35 3.93
2238 2753 2.547430 GGTCGTTACTAATGCCTAGGCC 60.547 54.545 30.81 13.48 41.09 5.19
2239 2754 2.364647 GTCGTTACTAATGCCTAGGCCT 59.635 50.000 30.81 19.15 41.09 5.19
2240 2755 3.036091 TCGTTACTAATGCCTAGGCCTT 58.964 45.455 30.81 27.65 41.09 4.35
2241 2756 3.453353 TCGTTACTAATGCCTAGGCCTTT 59.547 43.478 30.81 24.34 41.09 3.11
2242 2757 4.650588 TCGTTACTAATGCCTAGGCCTTTA 59.349 41.667 30.81 24.16 41.09 1.85
2243 2758 4.989168 CGTTACTAATGCCTAGGCCTTTAG 59.011 45.833 32.23 32.23 39.54 1.85
2244 2759 5.452917 CGTTACTAATGCCTAGGCCTTTAGT 60.453 44.000 36.51 36.51 44.09 2.24
2245 2760 4.691326 ACTAATGCCTAGGCCTTTAGTC 57.309 45.455 33.11 11.18 41.16 2.59
2246 2761 3.391626 ACTAATGCCTAGGCCTTTAGTCC 59.608 47.826 33.11 10.60 41.16 3.85
2247 2762 1.141185 ATGCCTAGGCCTTTAGTCCC 58.859 55.000 30.81 0.00 41.09 4.46
2248 2763 1.335132 TGCCTAGGCCTTTAGTCCCG 61.335 60.000 30.81 0.00 41.09 5.14
2249 2764 2.041206 GCCTAGGCCTTTAGTCCCGG 62.041 65.000 24.19 0.00 34.56 5.73
2250 2765 0.690077 CCTAGGCCTTTAGTCCCGGT 60.690 60.000 12.58 0.00 0.00 5.28
2251 2766 1.201424 CTAGGCCTTTAGTCCCGGTT 58.799 55.000 12.58 0.00 0.00 4.44
2252 2767 1.138464 CTAGGCCTTTAGTCCCGGTTC 59.862 57.143 12.58 0.00 0.00 3.62
2253 2768 0.546988 AGGCCTTTAGTCCCGGTTCT 60.547 55.000 0.00 0.15 0.00 3.01
2254 2769 0.327259 GGCCTTTAGTCCCGGTTCTT 59.673 55.000 0.00 0.00 0.00 2.52
2255 2770 1.556451 GGCCTTTAGTCCCGGTTCTTA 59.444 52.381 0.00 0.00 0.00 2.10
2256 2771 2.172082 GGCCTTTAGTCCCGGTTCTTAT 59.828 50.000 0.00 0.00 0.00 1.73
2257 2772 3.389002 GGCCTTTAGTCCCGGTTCTTATA 59.611 47.826 0.00 0.00 0.00 0.98
2258 2773 4.375272 GCCTTTAGTCCCGGTTCTTATAC 58.625 47.826 0.00 0.00 0.00 1.47
2259 2774 4.100653 GCCTTTAGTCCCGGTTCTTATACT 59.899 45.833 0.00 0.00 0.00 2.12
2260 2775 5.302823 GCCTTTAGTCCCGGTTCTTATACTA 59.697 44.000 0.00 0.00 0.00 1.82
2261 2776 6.183360 GCCTTTAGTCCCGGTTCTTATACTAA 60.183 42.308 0.00 0.30 0.00 2.24
2262 2777 7.205992 CCTTTAGTCCCGGTTCTTATACTAAC 58.794 42.308 0.00 0.00 31.21 2.34
2263 2778 6.715347 TTAGTCCCGGTTCTTATACTAACC 57.285 41.667 0.00 5.63 41.48 2.85
2270 2785 4.941657 GGTTCTTATACTAACCGGGACAG 58.058 47.826 6.32 1.47 36.12 3.51
2271 2786 4.646492 GGTTCTTATACTAACCGGGACAGA 59.354 45.833 6.32 0.00 36.12 3.41
2272 2787 5.303845 GGTTCTTATACTAACCGGGACAGAT 59.696 44.000 6.32 0.00 36.12 2.90
2273 2788 6.214399 GTTCTTATACTAACCGGGACAGATG 58.786 44.000 6.32 0.00 0.00 2.90
2274 2789 4.831155 TCTTATACTAACCGGGACAGATGG 59.169 45.833 6.32 0.00 0.00 3.51
2275 2790 1.784358 TACTAACCGGGACAGATGGG 58.216 55.000 6.32 0.00 0.00 4.00
2276 2791 1.146263 CTAACCGGGACAGATGGGC 59.854 63.158 6.32 0.00 0.00 5.36
2277 2792 1.613928 TAACCGGGACAGATGGGCA 60.614 57.895 6.32 0.00 0.00 5.36
2278 2793 0.986019 TAACCGGGACAGATGGGCAT 60.986 55.000 6.32 0.00 0.00 4.40
2279 2794 2.111878 CCGGGACAGATGGGCATC 59.888 66.667 0.00 0.00 38.09 3.91
2280 2795 2.111878 CGGGACAGATGGGCATCC 59.888 66.667 0.00 0.00 38.58 3.51
2289 2804 4.386951 TGGGCATCCACGTGGTCG 62.387 66.667 32.74 24.62 38.32 4.79
2291 2806 4.388499 GGCATCCACGTGGTCGGT 62.388 66.667 32.74 15.41 41.85 4.69
2292 2807 3.118454 GCATCCACGTGGTCGGTG 61.118 66.667 32.74 25.11 41.85 4.94
2293 2808 3.118454 CATCCACGTGGTCGGTGC 61.118 66.667 32.74 0.00 41.85 5.01
2294 2809 3.311110 ATCCACGTGGTCGGTGCT 61.311 61.111 32.74 8.43 41.85 4.40
2295 2810 3.589654 ATCCACGTGGTCGGTGCTG 62.590 63.158 32.74 5.38 41.85 4.41
2322 2837 4.966123 GCAGGAGGCCCTTTAGTC 57.034 61.111 0.00 0.00 42.02 2.59
2323 2838 1.224870 GCAGGAGGCCCTTTAGTCC 59.775 63.158 0.00 0.00 42.02 3.85
2324 2839 1.915983 CAGGAGGCCCTTTAGTCCC 59.084 63.158 0.00 0.00 42.02 4.46
2325 2840 1.689582 AGGAGGCCCTTTAGTCCCG 60.690 63.158 0.00 0.00 40.78 5.14
2326 2841 2.743179 GGAGGCCCTTTAGTCCCGG 61.743 68.421 0.00 0.00 0.00 5.73
2327 2842 1.993948 GAGGCCCTTTAGTCCCGGT 60.994 63.158 0.00 0.00 0.00 5.28
2328 2843 1.540617 AGGCCCTTTAGTCCCGGTT 60.541 57.895 0.00 0.00 0.00 4.44
2329 2844 1.378119 GGCCCTTTAGTCCCGGTTG 60.378 63.158 0.00 0.00 0.00 3.77
2330 2845 1.378119 GCCCTTTAGTCCCGGTTGG 60.378 63.158 0.00 0.00 0.00 3.77
2331 2846 2.072366 CCCTTTAGTCCCGGTTGGT 58.928 57.895 0.00 0.00 34.77 3.67
2332 2847 0.322187 CCCTTTAGTCCCGGTTGGTG 60.322 60.000 0.00 0.00 34.77 4.17
2333 2848 0.322187 CCTTTAGTCCCGGTTGGTGG 60.322 60.000 0.00 0.00 34.77 4.61
2334 2849 0.958876 CTTTAGTCCCGGTTGGTGGC 60.959 60.000 0.00 0.00 34.77 5.01
2335 2850 1.706995 TTTAGTCCCGGTTGGTGGCA 61.707 55.000 0.00 0.00 34.77 4.92
2336 2851 2.400269 TTAGTCCCGGTTGGTGGCAC 62.400 60.000 9.70 9.70 34.77 5.01
2349 2864 4.589675 GGCACCAACCGGGACCAA 62.590 66.667 6.32 0.00 41.15 3.67
2350 2865 2.282887 GCACCAACCGGGACCAAT 60.283 61.111 6.32 0.00 41.15 3.16
2351 2866 1.001887 GCACCAACCGGGACCAATA 60.002 57.895 6.32 0.00 41.15 1.90
2352 2867 1.029947 GCACCAACCGGGACCAATAG 61.030 60.000 6.32 0.00 41.15 1.73
2353 2868 0.393808 CACCAACCGGGACCAATAGG 60.394 60.000 6.32 0.00 41.15 2.57
2354 2869 1.453197 CCAACCGGGACCAATAGGC 60.453 63.158 6.32 0.00 40.01 3.93
2355 2870 1.301623 CAACCGGGACCAATAGGCA 59.698 57.895 6.32 0.00 39.06 4.75
2356 2871 1.029947 CAACCGGGACCAATAGGCAC 61.030 60.000 6.32 0.00 39.06 5.01
2357 2872 2.192175 CCGGGACCAATAGGCACC 59.808 66.667 0.00 0.00 39.06 5.01
2358 2873 2.192175 CGGGACCAATAGGCACCC 59.808 66.667 0.00 0.00 45.64 4.61
2360 2875 4.657952 GGACCAATAGGCACCCAC 57.342 61.111 0.00 0.00 39.06 4.61
2361 2876 1.451387 GGACCAATAGGCACCCACG 60.451 63.158 0.00 0.00 39.06 4.94
2362 2877 2.045340 ACCAATAGGCACCCACGC 60.045 61.111 0.00 0.00 39.06 5.34
2363 2878 3.202001 CCAATAGGCACCCACGCG 61.202 66.667 3.53 3.53 0.00 6.01
2364 2879 2.435938 CAATAGGCACCCACGCGT 60.436 61.111 5.58 5.58 0.00 6.01
2365 2880 2.125269 AATAGGCACCCACGCGTC 60.125 61.111 9.86 0.00 0.00 5.19
2366 2881 2.949909 AATAGGCACCCACGCGTCA 61.950 57.895 9.86 0.00 0.00 4.35
2367 2882 2.852495 AATAGGCACCCACGCGTCAG 62.852 60.000 9.86 6.05 0.00 3.51
2371 2886 4.969196 CACCCACGCGTCAGCTGT 62.969 66.667 9.86 0.00 42.32 4.40
2372 2887 4.235762 ACCCACGCGTCAGCTGTT 62.236 61.111 9.86 0.00 42.32 3.16
2373 2888 3.414700 CCCACGCGTCAGCTGTTC 61.415 66.667 9.86 7.56 42.32 3.18
2374 2889 2.661537 CCACGCGTCAGCTGTTCA 60.662 61.111 9.86 0.00 42.32 3.18
2375 2890 2.661566 CCACGCGTCAGCTGTTCAG 61.662 63.158 9.86 7.01 42.32 3.02
2376 2891 2.356313 ACGCGTCAGCTGTTCAGG 60.356 61.111 14.67 1.14 42.32 3.86
2377 2892 3.114616 CGCGTCAGCTGTTCAGGG 61.115 66.667 14.67 8.18 42.32 4.45
2378 2893 2.743928 GCGTCAGCTGTTCAGGGG 60.744 66.667 14.67 0.00 41.01 4.79
2379 2894 2.743928 CGTCAGCTGTTCAGGGGC 60.744 66.667 14.67 0.00 0.00 5.80
2380 2895 2.753029 GTCAGCTGTTCAGGGGCT 59.247 61.111 14.67 0.00 36.70 5.19
2381 2896 1.888436 CGTCAGCTGTTCAGGGGCTA 61.888 60.000 14.67 0.00 34.71 3.93
2382 2897 0.107945 GTCAGCTGTTCAGGGGCTAG 60.108 60.000 14.67 0.00 34.71 3.42
2383 2898 1.222936 CAGCTGTTCAGGGGCTAGG 59.777 63.158 5.25 0.00 34.71 3.02
2384 2899 1.997874 AGCTGTTCAGGGGCTAGGG 60.998 63.158 1.97 0.00 34.31 3.53
2385 2900 2.301738 GCTGTTCAGGGGCTAGGGT 61.302 63.158 1.97 0.00 0.00 4.34
2386 2901 1.853250 GCTGTTCAGGGGCTAGGGTT 61.853 60.000 1.97 0.00 0.00 4.11
2387 2902 0.698818 CTGTTCAGGGGCTAGGGTTT 59.301 55.000 0.00 0.00 0.00 3.27
2388 2903 1.075536 CTGTTCAGGGGCTAGGGTTTT 59.924 52.381 0.00 0.00 0.00 2.43
2389 2904 1.501604 TGTTCAGGGGCTAGGGTTTTT 59.498 47.619 0.00 0.00 0.00 1.94
2414 2929 4.429854 TTTTTGAAAGGGGGTGGATTTG 57.570 40.909 0.00 0.00 0.00 2.32
2415 2930 2.022718 TTGAAAGGGGGTGGATTTGG 57.977 50.000 0.00 0.00 0.00 3.28
2416 2931 0.116143 TGAAAGGGGGTGGATTTGGG 59.884 55.000 0.00 0.00 0.00 4.12
2417 2932 0.617535 GAAAGGGGGTGGATTTGGGG 60.618 60.000 0.00 0.00 0.00 4.96
2418 2933 2.118547 AAAGGGGGTGGATTTGGGGG 62.119 60.000 0.00 0.00 0.00 5.40
2419 2934 3.280968 GGGGGTGGATTTGGGGGT 61.281 66.667 0.00 0.00 0.00 4.95
2420 2935 2.866378 GGGGTGGATTTGGGGGTT 59.134 61.111 0.00 0.00 0.00 4.11
2421 2936 1.159905 GGGGTGGATTTGGGGGTTT 59.840 57.895 0.00 0.00 0.00 3.27
2422 2937 0.474854 GGGGTGGATTTGGGGGTTTT 60.475 55.000 0.00 0.00 0.00 2.43
2423 2938 0.690192 GGGTGGATTTGGGGGTTTTG 59.310 55.000 0.00 0.00 0.00 2.44
2424 2939 1.429930 GGTGGATTTGGGGGTTTTGT 58.570 50.000 0.00 0.00 0.00 2.83
2425 2940 2.610873 GGTGGATTTGGGGGTTTTGTA 58.389 47.619 0.00 0.00 0.00 2.41
2426 2941 3.178046 GGTGGATTTGGGGGTTTTGTAT 58.822 45.455 0.00 0.00 0.00 2.29
2427 2942 3.055458 GGTGGATTTGGGGGTTTTGTATG 60.055 47.826 0.00 0.00 0.00 2.39
2428 2943 3.055458 GTGGATTTGGGGGTTTTGTATGG 60.055 47.826 0.00 0.00 0.00 2.74
2429 2944 3.178046 GGATTTGGGGGTTTTGTATGGT 58.822 45.455 0.00 0.00 0.00 3.55
2430 2945 3.585289 GGATTTGGGGGTTTTGTATGGTT 59.415 43.478 0.00 0.00 0.00 3.67
2431 2946 4.778427 GGATTTGGGGGTTTTGTATGGTTA 59.222 41.667 0.00 0.00 0.00 2.85
2432 2947 5.248705 GGATTTGGGGGTTTTGTATGGTTAA 59.751 40.000 0.00 0.00 0.00 2.01
2433 2948 6.069905 GGATTTGGGGGTTTTGTATGGTTAAT 60.070 38.462 0.00 0.00 0.00 1.40
2434 2949 6.765355 TTTGGGGGTTTTGTATGGTTAATT 57.235 33.333 0.00 0.00 0.00 1.40
2435 2950 7.867160 TTTGGGGGTTTTGTATGGTTAATTA 57.133 32.000 0.00 0.00 0.00 1.40
2436 2951 7.867160 TTGGGGGTTTTGTATGGTTAATTAA 57.133 32.000 0.00 0.00 0.00 1.40
2437 2952 7.483580 TGGGGGTTTTGTATGGTTAATTAAG 57.516 36.000 0.00 0.00 0.00 1.85
2438 2953 6.440965 TGGGGGTTTTGTATGGTTAATTAAGG 59.559 38.462 0.00 0.00 0.00 2.69
2439 2954 6.441284 GGGGGTTTTGTATGGTTAATTAAGGT 59.559 38.462 0.00 0.00 0.00 3.50
2440 2955 7.324935 GGGGTTTTGTATGGTTAATTAAGGTG 58.675 38.462 0.00 0.00 0.00 4.00
2441 2956 7.038870 GGGGTTTTGTATGGTTAATTAAGGTGT 60.039 37.037 0.00 0.00 0.00 4.16
2442 2957 8.369424 GGGTTTTGTATGGTTAATTAAGGTGTT 58.631 33.333 0.00 0.00 0.00 3.32
2443 2958 9.767228 GGTTTTGTATGGTTAATTAAGGTGTTT 57.233 29.630 0.00 0.00 0.00 2.83
2462 2977 9.832445 AGGTGTTTCATATATTGTGTTAGGTAG 57.168 33.333 0.00 0.00 0.00 3.18
2463 2978 8.557029 GGTGTTTCATATATTGTGTTAGGTAGC 58.443 37.037 0.00 0.00 0.00 3.58
2464 2979 9.326413 GTGTTTCATATATTGTGTTAGGTAGCT 57.674 33.333 0.00 0.00 0.00 3.32
2501 3016 5.445964 AGAGAAGTGTCCTCTCTTATCTCC 58.554 45.833 0.00 0.00 39.76 3.71
2502 3017 4.204012 AGAAGTGTCCTCTCTTATCTCCG 58.796 47.826 0.00 0.00 0.00 4.63
2503 3018 3.655615 AGTGTCCTCTCTTATCTCCGT 57.344 47.619 0.00 0.00 0.00 4.69
2504 3019 3.283751 AGTGTCCTCTCTTATCTCCGTG 58.716 50.000 0.00 0.00 0.00 4.94
2505 3020 2.025155 TGTCCTCTCTTATCTCCGTGC 58.975 52.381 0.00 0.00 0.00 5.34
2506 3021 2.303175 GTCCTCTCTTATCTCCGTGCT 58.697 52.381 0.00 0.00 0.00 4.40
2507 3022 2.691011 GTCCTCTCTTATCTCCGTGCTT 59.309 50.000 0.00 0.00 0.00 3.91
2508 3023 2.690497 TCCTCTCTTATCTCCGTGCTTG 59.310 50.000 0.00 0.00 0.00 4.01
2509 3024 2.223923 CCTCTCTTATCTCCGTGCTTGG 60.224 54.545 0.00 0.00 0.00 3.61
2510 3025 2.428890 CTCTCTTATCTCCGTGCTTGGT 59.571 50.000 0.00 0.00 0.00 3.67
2511 3026 2.427453 TCTCTTATCTCCGTGCTTGGTC 59.573 50.000 0.00 0.00 0.00 4.02
2512 3027 1.134367 TCTTATCTCCGTGCTTGGTCG 59.866 52.381 0.00 0.00 0.00 4.79
2513 3028 1.134367 CTTATCTCCGTGCTTGGTCGA 59.866 52.381 0.00 0.00 0.00 4.20
2514 3029 0.454600 TATCTCCGTGCTTGGTCGAC 59.545 55.000 7.13 7.13 0.00 4.20
2515 3030 2.543687 ATCTCCGTGCTTGGTCGACG 62.544 60.000 9.92 0.00 0.00 5.12
2518 3033 2.126618 CGTGCTTGGTCGACGCTA 60.127 61.111 9.92 0.00 0.00 4.26
2519 3034 2.434134 CGTGCTTGGTCGACGCTAC 61.434 63.158 9.92 7.70 0.00 3.58
2520 3035 2.126618 TGCTTGGTCGACGCTACG 60.127 61.111 9.92 0.00 0.00 3.51
2521 3036 2.126580 GCTTGGTCGACGCTACGT 60.127 61.111 9.92 0.00 45.10 3.57
2522 3037 1.135315 GCTTGGTCGACGCTACGTA 59.865 57.895 9.92 0.00 41.37 3.57
2523 3038 1.130458 GCTTGGTCGACGCTACGTAC 61.130 60.000 9.92 0.00 41.37 3.67
2524 3039 0.445436 CTTGGTCGACGCTACGTACT 59.555 55.000 9.92 0.00 41.37 2.73
2525 3040 1.660607 CTTGGTCGACGCTACGTACTA 59.339 52.381 9.92 0.00 41.37 1.82
2526 3041 1.939974 TGGTCGACGCTACGTACTAT 58.060 50.000 9.92 0.00 41.37 2.12
2527 3042 3.092334 TGGTCGACGCTACGTACTATA 57.908 47.619 9.92 0.00 41.37 1.31
2528 3043 2.794910 TGGTCGACGCTACGTACTATAC 59.205 50.000 9.92 0.00 41.37 1.47
2529 3044 2.794910 GGTCGACGCTACGTACTATACA 59.205 50.000 9.92 0.00 41.37 2.29
2530 3045 3.430218 GGTCGACGCTACGTACTATACAT 59.570 47.826 9.92 0.00 41.37 2.29
2531 3046 4.621460 GGTCGACGCTACGTACTATACATA 59.379 45.833 9.92 0.00 41.37 2.29
2532 3047 5.220117 GGTCGACGCTACGTACTATACATAG 60.220 48.000 9.92 0.00 41.37 2.23
2533 3048 5.569441 GTCGACGCTACGTACTATACATAGA 59.431 44.000 0.00 0.00 41.37 1.98
2534 3049 5.797434 TCGACGCTACGTACTATACATAGAG 59.203 44.000 3.27 0.00 41.37 2.43
2535 3050 5.797434 CGACGCTACGTACTATACATAGAGA 59.203 44.000 3.27 0.00 41.37 3.10
2536 3051 6.021547 CGACGCTACGTACTATACATAGAGAG 60.022 46.154 3.27 0.00 41.37 3.20
2537 3052 6.098679 ACGCTACGTACTATACATAGAGAGG 58.901 44.000 3.27 0.31 38.73 3.69
2538 3053 5.005586 CGCTACGTACTATACATAGAGAGGC 59.994 48.000 3.27 0.00 27.92 4.70
2539 3054 5.294060 GCTACGTACTATACATAGAGAGGCC 59.706 48.000 0.00 0.00 34.50 5.19
2540 3055 4.587891 ACGTACTATACATAGAGAGGCCC 58.412 47.826 0.00 0.00 34.50 5.80
2541 3056 4.289148 ACGTACTATACATAGAGAGGCCCT 59.711 45.833 0.00 0.00 34.50 5.19
2542 3057 4.877251 CGTACTATACATAGAGAGGCCCTC 59.123 50.000 1.26 1.26 42.28 4.30
2543 3058 3.958018 ACTATACATAGAGAGGCCCTCG 58.042 50.000 4.80 0.00 46.49 4.63
2544 3059 3.587951 ACTATACATAGAGAGGCCCTCGA 59.412 47.826 4.80 10.12 46.49 4.04
2545 3060 2.273538 TACATAGAGAGGCCCTCGAC 57.726 55.000 4.80 3.98 46.49 4.20
2546 3061 0.259065 ACATAGAGAGGCCCTCGACA 59.741 55.000 4.80 0.00 46.49 4.35
2547 3062 0.671251 CATAGAGAGGCCCTCGACAC 59.329 60.000 4.80 0.00 46.49 3.67
2548 3063 0.820074 ATAGAGAGGCCCTCGACACG 60.820 60.000 4.80 0.00 46.49 4.49
2549 3064 4.500116 GAGAGGCCCTCGACACGC 62.500 72.222 4.80 0.00 35.36 5.34
2551 3066 3.138798 GAGGCCCTCGACACGCTA 61.139 66.667 0.00 0.00 0.00 4.26
2552 3067 3.127352 GAGGCCCTCGACACGCTAG 62.127 68.421 0.00 0.00 0.00 3.42
2553 3068 4.874977 GGCCCTCGACACGCTAGC 62.875 72.222 4.06 4.06 0.00 3.42
2554 3069 3.827898 GCCCTCGACACGCTAGCT 61.828 66.667 13.93 0.00 0.00 3.32
2555 3070 2.478890 GCCCTCGACACGCTAGCTA 61.479 63.158 13.93 0.00 0.00 3.32
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
144 149 2.819595 CCCTCCACGCCATTCACG 60.820 66.667 0.00 0.00 0.00 4.35
220 231 0.901827 GCCGGTCCCCAAAATTCATT 59.098 50.000 1.90 0.00 0.00 2.57
250 263 2.677979 GGTTCCAGCTTTCGCGGTC 61.678 63.158 6.13 0.00 42.32 4.79
377 407 3.321648 ATCACCAGCTCGCCACCA 61.322 61.111 0.00 0.00 0.00 4.17
380 410 3.258228 AAGCATCACCAGCTCGCCA 62.258 57.895 0.00 0.00 42.53 5.69
428 468 1.118838 CCAACTTTTTGCCCTGGACA 58.881 50.000 0.00 0.00 0.00 4.02
429 469 1.408969 TCCAACTTTTTGCCCTGGAC 58.591 50.000 0.00 0.00 31.19 4.02
430 470 1.969923 CATCCAACTTTTTGCCCTGGA 59.030 47.619 0.00 0.00 40.36 3.86
431 471 1.608801 GCATCCAACTTTTTGCCCTGG 60.609 52.381 0.00 0.00 0.00 4.45
433 473 0.318120 CGCATCCAACTTTTTGCCCT 59.682 50.000 0.00 0.00 0.00 5.19
434 474 0.316841 TCGCATCCAACTTTTTGCCC 59.683 50.000 0.00 0.00 0.00 5.36
460 502 3.476295 TGCATCGCTTTCTTTTGCTAG 57.524 42.857 0.00 0.00 34.47 3.42
463 505 3.857923 TTTTGCATCGCTTTCTTTTGC 57.142 38.095 0.00 0.00 0.00 3.68
469 511 3.380142 TCAACCTTTTTGCATCGCTTTC 58.620 40.909 0.00 0.00 0.00 2.62
497 541 4.039852 TCAGTTTATCTTTTTGCCAACCCC 59.960 41.667 0.00 0.00 0.00 4.95
498 542 4.988540 GTCAGTTTATCTTTTTGCCAACCC 59.011 41.667 0.00 0.00 0.00 4.11
560 604 1.671054 GAGCCTTGGCTTGTACGCA 60.671 57.895 15.92 0.00 0.00 5.24
561 605 2.740714 CGAGCCTTGGCTTGTACGC 61.741 63.158 15.92 0.81 0.00 4.42
562 606 0.669318 TTCGAGCCTTGGCTTGTACG 60.669 55.000 23.72 18.03 0.00 3.67
563 607 0.796927 GTTCGAGCCTTGGCTTGTAC 59.203 55.000 23.72 21.00 0.00 2.90
564 608 0.321298 GGTTCGAGCCTTGGCTTGTA 60.321 55.000 23.72 14.75 0.00 2.41
565 609 1.600916 GGTTCGAGCCTTGGCTTGT 60.601 57.895 23.72 0.32 0.00 3.16
566 610 1.302832 AGGTTCGAGCCTTGGCTTG 60.303 57.895 16.03 20.07 34.71 4.01
567 611 1.302832 CAGGTTCGAGCCTTGGCTT 60.303 57.895 19.35 0.00 36.58 4.35
568 612 2.348998 CAGGTTCGAGCCTTGGCT 59.651 61.111 19.35 14.69 36.58 4.75
569 613 3.435186 GCAGGTTCGAGCCTTGGC 61.435 66.667 19.35 16.06 36.58 4.52
570 614 3.121030 CGCAGGTTCGAGCCTTGG 61.121 66.667 19.35 9.69 36.58 3.61
571 615 2.357517 ACGCAGGTTCGAGCCTTG 60.358 61.111 19.35 16.06 36.58 3.61
572 616 2.048127 GACGCAGGTTCGAGCCTT 60.048 61.111 19.35 4.11 36.58 4.35
573 617 4.421479 CGACGCAGGTTCGAGCCT 62.421 66.667 16.03 16.03 39.99 4.58
587 631 2.733593 GTGTGTCTCGTGGCCGAC 60.734 66.667 0.00 0.00 38.40 4.79
588 632 3.986006 GGTGTGTCTCGTGGCCGA 61.986 66.667 0.00 0.00 41.73 5.54
592 636 3.916392 GAGGCGGTGTGTCTCGTGG 62.916 68.421 0.00 0.00 40.02 4.94
593 637 2.430921 GAGGCGGTGTGTCTCGTG 60.431 66.667 0.00 0.00 40.02 4.35
596 640 4.057428 AGCGAGGCGGTGTGTCTC 62.057 66.667 0.00 0.00 46.20 3.36
623 667 1.341156 ACAGTGGATGGGCTCCTAGC 61.341 60.000 0.00 0.00 45.21 3.42
624 668 0.467384 CACAGTGGATGGGCTCCTAG 59.533 60.000 0.00 0.00 45.21 3.02
625 669 0.042581 TCACAGTGGATGGGCTCCTA 59.957 55.000 0.00 0.00 45.21 2.94
626 670 0.842030 TTCACAGTGGATGGGCTCCT 60.842 55.000 0.00 0.00 45.21 3.69
627 671 0.393537 CTTCACAGTGGATGGGCTCC 60.394 60.000 0.00 0.00 45.19 4.70
628 672 0.615331 TCTTCACAGTGGATGGGCTC 59.385 55.000 0.00 0.00 29.64 4.70
629 673 1.293062 ATCTTCACAGTGGATGGGCT 58.707 50.000 0.00 0.00 29.64 5.19
630 674 3.118261 TCTTATCTTCACAGTGGATGGGC 60.118 47.826 0.00 0.00 29.64 5.36
631 675 4.760530 TCTTATCTTCACAGTGGATGGG 57.239 45.455 0.00 0.00 0.00 4.00
632 676 6.422100 CGTATTCTTATCTTCACAGTGGATGG 59.578 42.308 0.00 0.00 0.00 3.51
633 677 6.980978 ACGTATTCTTATCTTCACAGTGGATG 59.019 38.462 0.00 0.00 0.00 3.51
634 678 7.113658 ACGTATTCTTATCTTCACAGTGGAT 57.886 36.000 0.00 0.00 0.00 3.41
635 679 6.525578 ACGTATTCTTATCTTCACAGTGGA 57.474 37.500 0.00 0.00 0.00 4.02
636 680 7.704271 TCTACGTATTCTTATCTTCACAGTGG 58.296 38.462 0.00 0.00 0.00 4.00
637 681 9.737427 ATTCTACGTATTCTTATCTTCACAGTG 57.263 33.333 0.00 0.00 0.00 3.66
728 772 4.041198 CCAAGTACTAAAAGGTGGTCTCCA 59.959 45.833 0.00 0.00 0.00 3.86
830 876 7.281774 CTGAAAGCCAGAGTGATAACACATAAT 59.718 37.037 5.87 0.00 45.78 1.28
856 902 4.397481 AGTACTAATAAGCGGTCCCAAC 57.603 45.455 0.00 0.00 0.00 3.77
988 1044 6.761242 TGTCCATTCTTTCAGTATACATTCCG 59.239 38.462 5.50 0.00 0.00 4.30
1039 1095 1.260297 TCGAACAACACAAGCATCACG 59.740 47.619 0.00 0.00 0.00 4.35
1242 1300 2.226962 AAAGCCTCAAGGACATGCAT 57.773 45.000 0.00 0.00 37.39 3.96
1286 1344 6.084326 ACTGTAACACATGATTTTCCAACC 57.916 37.500 0.00 0.00 0.00 3.77
1453 1512 4.562757 CCGAAGAACTTATCACACCAAGGA 60.563 45.833 0.00 0.00 0.00 3.36
1462 1521 3.767673 AGTAGCCACCGAAGAACTTATCA 59.232 43.478 0.00 0.00 0.00 2.15
1509 1568 9.088512 CGCCTAACATATCCATTAAGTTCTATC 57.911 37.037 0.00 0.00 0.00 2.08
1559 1618 6.428159 AGTGATTCAGGACACAAAGTTATGAC 59.572 38.462 0.00 0.00 39.18 3.06
1607 1666 1.377202 GGCATGACGCTCTCCCAAA 60.377 57.895 0.00 0.00 41.91 3.28
1650 2086 2.354704 GCAGCATAGTGTGTCCAACCTA 60.355 50.000 0.00 0.00 0.00 3.08
1740 2188 9.733556 AACTTAAAAGGTTGGACTTTTCAAAAT 57.266 25.926 7.14 0.00 44.90 1.82
2044 2558 8.860088 GCAGAAATTTCCCCACATAAATATACT 58.140 33.333 14.61 0.00 0.00 2.12
2076 2590 4.579869 CACCAATATAGTACATGGAGCCC 58.420 47.826 0.00 0.00 36.75 5.19
2140 2655 3.627492 GGCCCTTTTTCTATTAGTGCCCT 60.627 47.826 0.00 0.00 0.00 5.19
2141 2656 2.693591 GGCCCTTTTTCTATTAGTGCCC 59.306 50.000 0.00 0.00 0.00 5.36
2144 2659 6.935167 ACAAATGGCCCTTTTTCTATTAGTG 58.065 36.000 2.87 0.00 0.00 2.74
2145 2660 6.154534 GGACAAATGGCCCTTTTTCTATTAGT 59.845 38.462 16.22 4.58 37.19 2.24
2146 2661 6.573434 GGACAAATGGCCCTTTTTCTATTAG 58.427 40.000 16.22 1.81 37.19 1.73
2147 2662 6.538945 GGACAAATGGCCCTTTTTCTATTA 57.461 37.500 16.22 0.00 37.19 0.98
2148 2663 5.420725 GGACAAATGGCCCTTTTTCTATT 57.579 39.130 16.22 0.00 37.19 1.73
2159 2674 1.560505 ATGAAGTGGGACAAATGGCC 58.439 50.000 0.00 0.00 44.16 5.36
2160 2675 3.131046 CCTTATGAAGTGGGACAAATGGC 59.869 47.826 0.00 0.00 44.16 4.40
2161 2676 3.131046 GCCTTATGAAGTGGGACAAATGG 59.869 47.826 0.00 0.00 44.16 3.16
2162 2677 3.131046 GGCCTTATGAAGTGGGACAAATG 59.869 47.826 0.00 0.00 44.16 2.32
2163 2678 3.365472 GGCCTTATGAAGTGGGACAAAT 58.635 45.455 0.00 0.00 44.16 2.32
2164 2679 2.556559 GGGCCTTATGAAGTGGGACAAA 60.557 50.000 0.84 0.00 44.16 2.83
2165 2680 1.005450 GGGCCTTATGAAGTGGGACAA 59.995 52.381 0.84 0.00 44.16 3.18
2166 2681 0.623723 GGGCCTTATGAAGTGGGACA 59.376 55.000 0.84 0.00 0.00 4.02
2167 2682 0.623723 TGGGCCTTATGAAGTGGGAC 59.376 55.000 4.53 0.00 0.00 4.46
2168 2683 1.494721 GATGGGCCTTATGAAGTGGGA 59.505 52.381 4.53 0.00 0.00 4.37
2169 2684 1.496429 AGATGGGCCTTATGAAGTGGG 59.504 52.381 4.53 0.00 0.00 4.61
2170 2685 2.092212 ACAGATGGGCCTTATGAAGTGG 60.092 50.000 19.57 0.00 0.00 4.00
2171 2686 3.209410 GACAGATGGGCCTTATGAAGTG 58.791 50.000 19.57 2.01 0.00 3.16
2172 2687 2.173569 GGACAGATGGGCCTTATGAAGT 59.826 50.000 19.57 2.46 0.00 3.01
2173 2688 2.487986 GGGACAGATGGGCCTTATGAAG 60.488 54.545 19.57 0.00 0.00 3.02
2174 2689 1.494721 GGGACAGATGGGCCTTATGAA 59.505 52.381 19.57 0.00 0.00 2.57
2175 2690 1.140312 GGGACAGATGGGCCTTATGA 58.860 55.000 19.57 0.00 0.00 2.15
2176 2691 0.250467 CGGGACAGATGGGCCTTATG 60.250 60.000 12.06 12.06 0.00 1.90
2177 2692 1.418908 CCGGGACAGATGGGCCTTAT 61.419 60.000 4.53 0.00 0.00 1.73
2178 2693 2.070039 CCGGGACAGATGGGCCTTA 61.070 63.158 4.53 0.00 0.00 2.69
2179 2694 3.411517 CCGGGACAGATGGGCCTT 61.412 66.667 4.53 0.00 0.00 4.35
2180 2695 4.741239 ACCGGGACAGATGGGCCT 62.741 66.667 6.32 0.00 0.00 5.19
2181 2696 3.728373 AACCGGGACAGATGGGCC 61.728 66.667 6.32 0.00 0.00 5.80
2182 2697 2.438434 CAACCGGGACAGATGGGC 60.438 66.667 6.32 0.00 0.00 5.36
2183 2698 2.272146 CCAACCGGGACAGATGGG 59.728 66.667 6.32 0.00 40.01 4.00
2196 2711 0.401356 TTTAGTCCCGGTTCCCCAAC 59.599 55.000 0.00 0.00 0.00 3.77
2197 2712 0.694196 CTTTAGTCCCGGTTCCCCAA 59.306 55.000 0.00 0.00 0.00 4.12
2198 2713 1.202769 CCTTTAGTCCCGGTTCCCCA 61.203 60.000 0.00 0.00 0.00 4.96
2199 2714 1.605992 CCTTTAGTCCCGGTTCCCC 59.394 63.158 0.00 0.00 0.00 4.81
2200 2715 1.203441 ACCCTTTAGTCCCGGTTCCC 61.203 60.000 0.00 0.00 0.00 3.97
2201 2716 0.251354 GACCCTTTAGTCCCGGTTCC 59.749 60.000 0.00 0.00 0.00 3.62
2202 2717 0.108472 CGACCCTTTAGTCCCGGTTC 60.108 60.000 0.00 0.00 32.91 3.62
2203 2718 0.833409 ACGACCCTTTAGTCCCGGTT 60.833 55.000 0.00 0.00 32.91 4.44
2204 2719 0.833409 AACGACCCTTTAGTCCCGGT 60.833 55.000 0.00 0.00 32.91 5.28
2205 2720 1.134995 GTAACGACCCTTTAGTCCCGG 60.135 57.143 0.00 0.00 32.91 5.73
2206 2721 1.821136 AGTAACGACCCTTTAGTCCCG 59.179 52.381 0.00 0.00 32.91 5.14
2207 2722 5.354767 CATTAGTAACGACCCTTTAGTCCC 58.645 45.833 0.00 0.00 32.91 4.46
2208 2723 4.807834 GCATTAGTAACGACCCTTTAGTCC 59.192 45.833 0.00 0.00 32.91 3.85
2209 2724 4.807834 GGCATTAGTAACGACCCTTTAGTC 59.192 45.833 0.00 0.00 0.00 2.59
2210 2725 4.468868 AGGCATTAGTAACGACCCTTTAGT 59.531 41.667 0.00 0.00 0.00 2.24
2211 2726 5.019785 AGGCATTAGTAACGACCCTTTAG 57.980 43.478 0.00 0.00 0.00 1.85
2212 2727 5.069516 CCTAGGCATTAGTAACGACCCTTTA 59.930 44.000 0.00 0.00 0.00 1.85
2213 2728 3.994931 AGGCATTAGTAACGACCCTTT 57.005 42.857 0.00 0.00 0.00 3.11
2214 2729 3.387050 CCTAGGCATTAGTAACGACCCTT 59.613 47.826 0.00 0.00 0.00 3.95
2215 2730 2.963782 CCTAGGCATTAGTAACGACCCT 59.036 50.000 0.00 0.00 0.00 4.34
2216 2731 2.547430 GCCTAGGCATTAGTAACGACCC 60.547 54.545 29.33 0.00 41.49 4.46
2217 2732 2.547430 GGCCTAGGCATTAGTAACGACC 60.547 54.545 34.09 9.02 44.11 4.79
2218 2733 2.364647 AGGCCTAGGCATTAGTAACGAC 59.635 50.000 34.09 12.73 44.11 4.34
2219 2734 2.674420 AGGCCTAGGCATTAGTAACGA 58.326 47.619 34.09 0.00 44.11 3.85
2220 2735 3.470645 AAGGCCTAGGCATTAGTAACG 57.529 47.619 31.20 0.00 43.55 3.18
2221 2736 5.926663 ACTAAAGGCCTAGGCATTAGTAAC 58.073 41.667 37.67 21.95 44.64 2.50
2222 2737 5.071384 GGACTAAAGGCCTAGGCATTAGTAA 59.929 44.000 38.08 24.14 45.90 2.24
2223 2738 4.591924 GGACTAAAGGCCTAGGCATTAGTA 59.408 45.833 38.08 26.95 45.90 1.82
2225 2740 3.244596 GGGACTAAAGGCCTAGGCATTAG 60.245 52.174 34.65 34.65 44.64 1.73
2226 2741 2.709397 GGGACTAAAGGCCTAGGCATTA 59.291 50.000 32.19 26.63 44.64 1.90
2228 2743 1.141185 GGGACTAAAGGCCTAGGCAT 58.859 55.000 34.09 26.60 44.11 4.40
2229 2744 1.335132 CGGGACTAAAGGCCTAGGCA 61.335 60.000 34.09 13.72 44.11 4.75
2230 2745 1.446366 CGGGACTAAAGGCCTAGGC 59.554 63.158 26.55 26.55 41.06 3.93
2231 2746 0.690077 ACCGGGACTAAAGGCCTAGG 60.690 60.000 5.16 3.67 0.00 3.02
2232 2747 1.138464 GAACCGGGACTAAAGGCCTAG 59.862 57.143 5.16 2.46 0.00 3.02
2233 2748 1.197812 GAACCGGGACTAAAGGCCTA 58.802 55.000 5.16 0.00 0.00 3.93
2234 2749 0.546988 AGAACCGGGACTAAAGGCCT 60.547 55.000 6.32 0.00 0.00 5.19
2235 2750 0.327259 AAGAACCGGGACTAAAGGCC 59.673 55.000 6.32 0.00 0.00 5.19
2236 2751 3.555527 ATAAGAACCGGGACTAAAGGC 57.444 47.619 6.32 0.00 0.00 4.35
2237 2752 5.866159 AGTATAAGAACCGGGACTAAAGG 57.134 43.478 6.32 0.00 0.00 3.11
2238 2753 7.205992 GGTTAGTATAAGAACCGGGACTAAAG 58.794 42.308 6.32 0.00 36.05 1.85
2239 2754 7.112452 GGTTAGTATAAGAACCGGGACTAAA 57.888 40.000 6.32 0.00 36.05 1.85
2240 2755 6.715347 GGTTAGTATAAGAACCGGGACTAA 57.285 41.667 6.32 5.08 36.05 2.24
2248 2763 4.646492 TCTGTCCCGGTTAGTATAAGAACC 59.354 45.833 0.00 6.89 41.52 3.62
2249 2764 5.841957 TCTGTCCCGGTTAGTATAAGAAC 57.158 43.478 0.00 0.00 0.00 3.01
2250 2765 5.303589 CCATCTGTCCCGGTTAGTATAAGAA 59.696 44.000 0.00 0.00 0.00 2.52
2251 2766 4.831155 CCATCTGTCCCGGTTAGTATAAGA 59.169 45.833 0.00 0.00 0.00 2.10
2252 2767 4.021368 CCCATCTGTCCCGGTTAGTATAAG 60.021 50.000 0.00 0.00 0.00 1.73
2253 2768 3.899360 CCCATCTGTCCCGGTTAGTATAA 59.101 47.826 0.00 0.00 0.00 0.98
2254 2769 3.503365 CCCATCTGTCCCGGTTAGTATA 58.497 50.000 0.00 0.00 0.00 1.47
2255 2770 2.326428 CCCATCTGTCCCGGTTAGTAT 58.674 52.381 0.00 0.00 0.00 2.12
2256 2771 1.784358 CCCATCTGTCCCGGTTAGTA 58.216 55.000 0.00 0.00 0.00 1.82
2257 2772 1.623542 GCCCATCTGTCCCGGTTAGT 61.624 60.000 0.00 0.00 0.00 2.24
2258 2773 1.146263 GCCCATCTGTCCCGGTTAG 59.854 63.158 0.00 0.00 0.00 2.34
2259 2774 0.986019 ATGCCCATCTGTCCCGGTTA 60.986 55.000 0.00 0.00 0.00 2.85
2260 2775 2.270874 GATGCCCATCTGTCCCGGTT 62.271 60.000 0.00 0.00 35.04 4.44
2261 2776 2.692368 ATGCCCATCTGTCCCGGT 60.692 61.111 0.00 0.00 0.00 5.28
2262 2777 2.111878 GATGCCCATCTGTCCCGG 59.888 66.667 0.00 0.00 35.04 5.73
2263 2778 2.111878 GGATGCCCATCTGTCCCG 59.888 66.667 8.06 0.00 37.92 5.14
2264 2779 1.152881 GTGGATGCCCATCTGTCCC 60.153 63.158 8.06 0.00 45.68 4.46
2265 2780 1.524621 CGTGGATGCCCATCTGTCC 60.525 63.158 8.06 0.00 45.68 4.02
2266 2781 1.091771 CACGTGGATGCCCATCTGTC 61.092 60.000 7.95 0.00 45.68 3.51
2267 2782 1.078214 CACGTGGATGCCCATCTGT 60.078 57.895 7.95 2.81 45.68 3.41
2268 2783 1.820906 CCACGTGGATGCCCATCTG 60.821 63.158 31.31 0.00 45.68 2.90
2269 2784 2.257409 GACCACGTGGATGCCCATCT 62.257 60.000 40.21 15.28 45.68 2.90
2270 2785 1.819632 GACCACGTGGATGCCCATC 60.820 63.158 40.21 21.39 45.68 3.51
2271 2786 2.272146 GACCACGTGGATGCCCAT 59.728 61.111 40.21 16.93 45.68 4.00
2272 2787 4.386951 CGACCACGTGGATGCCCA 62.387 66.667 40.21 0.00 40.95 5.36
2274 2789 4.388499 ACCGACCACGTGGATGCC 62.388 66.667 40.21 22.66 38.94 4.40
2275 2790 3.118454 CACCGACCACGTGGATGC 61.118 66.667 40.21 25.35 38.94 3.91
2276 2791 3.118454 GCACCGACCACGTGGATG 61.118 66.667 40.21 28.64 38.94 3.51
2277 2792 3.311110 AGCACCGACCACGTGGAT 61.311 61.111 40.21 24.06 38.94 3.41
2278 2793 4.293648 CAGCACCGACCACGTGGA 62.294 66.667 40.21 0.00 38.94 4.02
2305 2820 1.224870 GGACTAAAGGGCCTCCTGC 59.775 63.158 6.46 0.00 44.07 4.85
2306 2821 1.915983 GGGACTAAAGGGCCTCCTG 59.084 63.158 6.46 1.86 44.07 3.86
2308 2823 2.743179 CCGGGACTAAAGGGCCTCC 61.743 68.421 6.46 2.70 44.42 4.30
2309 2824 1.559965 AACCGGGACTAAAGGGCCTC 61.560 60.000 6.46 0.00 44.42 4.70
2310 2825 1.540617 AACCGGGACTAAAGGGCCT 60.541 57.895 6.32 0.00 44.42 5.19
2311 2826 1.378119 CAACCGGGACTAAAGGGCC 60.378 63.158 6.32 0.00 44.23 5.80
2312 2827 1.378119 CCAACCGGGACTAAAGGGC 60.378 63.158 6.32 0.00 40.01 5.19
2313 2828 0.322187 CACCAACCGGGACTAAAGGG 60.322 60.000 6.32 0.00 41.15 3.95
2314 2829 0.322187 CCACCAACCGGGACTAAAGG 60.322 60.000 6.32 0.00 41.15 3.11
2315 2830 0.958876 GCCACCAACCGGGACTAAAG 60.959 60.000 6.32 0.00 41.15 1.85
2316 2831 1.073548 GCCACCAACCGGGACTAAA 59.926 57.895 6.32 0.00 41.15 1.85
2317 2832 2.148052 TGCCACCAACCGGGACTAA 61.148 57.895 6.32 0.00 41.15 2.24
2318 2833 2.527123 TGCCACCAACCGGGACTA 60.527 61.111 6.32 0.00 41.15 2.59
2319 2834 4.265056 GTGCCACCAACCGGGACT 62.265 66.667 6.32 0.00 41.35 3.85
2332 2847 2.487274 TATTGGTCCCGGTTGGTGCC 62.487 60.000 0.00 0.00 34.77 5.01
2333 2848 1.001887 TATTGGTCCCGGTTGGTGC 60.002 57.895 0.00 0.00 34.77 5.01
2334 2849 0.393808 CCTATTGGTCCCGGTTGGTG 60.394 60.000 0.00 0.00 34.77 4.17
2335 2850 1.996086 CCTATTGGTCCCGGTTGGT 59.004 57.895 0.00 0.00 34.77 3.67
2336 2851 1.453197 GCCTATTGGTCCCGGTTGG 60.453 63.158 0.00 0.00 35.27 3.77
2337 2852 1.029947 GTGCCTATTGGTCCCGGTTG 61.030 60.000 0.00 0.00 35.27 3.77
2338 2853 1.301954 GTGCCTATTGGTCCCGGTT 59.698 57.895 0.00 0.00 35.27 4.44
2339 2854 2.676265 GGTGCCTATTGGTCCCGGT 61.676 63.158 0.00 0.00 35.27 5.28
2340 2855 2.192175 GGTGCCTATTGGTCCCGG 59.808 66.667 0.00 0.00 35.27 5.73
2341 2856 2.192175 GGGTGCCTATTGGTCCCG 59.808 66.667 11.19 0.00 38.81 5.14
2342 2857 1.076995 GTGGGTGCCTATTGGTCCC 60.077 63.158 16.80 16.80 44.08 4.46
2343 2858 1.451387 CGTGGGTGCCTATTGGTCC 60.451 63.158 0.00 0.00 35.27 4.46
2344 2859 2.112815 GCGTGGGTGCCTATTGGTC 61.113 63.158 0.00 0.00 35.27 4.02
2345 2860 2.045340 GCGTGGGTGCCTATTGGT 60.045 61.111 0.00 0.00 35.27 3.67
2346 2861 3.202001 CGCGTGGGTGCCTATTGG 61.202 66.667 0.00 0.00 0.00 3.16
2347 2862 2.435938 ACGCGTGGGTGCCTATTG 60.436 61.111 12.93 0.00 0.00 1.90
2348 2863 2.125269 GACGCGTGGGTGCCTATT 60.125 61.111 20.70 0.00 0.00 1.73
2349 2864 3.371097 CTGACGCGTGGGTGCCTAT 62.371 63.158 20.70 0.00 0.00 2.57
2350 2865 4.063967 CTGACGCGTGGGTGCCTA 62.064 66.667 20.70 0.00 0.00 3.93
2354 2869 4.969196 ACAGCTGACGCGTGGGTG 62.969 66.667 27.66 27.66 42.32 4.61
2355 2870 4.235762 AACAGCTGACGCGTGGGT 62.236 61.111 20.70 12.50 42.32 4.51
2356 2871 3.414700 GAACAGCTGACGCGTGGG 61.415 66.667 20.70 10.43 42.32 4.61
2357 2872 2.661537 TGAACAGCTGACGCGTGG 60.662 61.111 20.70 10.85 42.32 4.94
2358 2873 2.661566 CCTGAACAGCTGACGCGTG 61.662 63.158 20.70 3.71 42.32 5.34
2359 2874 2.356313 CCTGAACAGCTGACGCGT 60.356 61.111 23.35 13.85 42.32 6.01
2360 2875 3.114616 CCCTGAACAGCTGACGCG 61.115 66.667 23.35 3.53 42.32 6.01
2361 2876 2.743928 CCCCTGAACAGCTGACGC 60.744 66.667 23.35 9.45 0.00 5.19
2362 2877 1.888436 TAGCCCCTGAACAGCTGACG 61.888 60.000 23.35 9.90 37.45 4.35
2363 2878 0.107945 CTAGCCCCTGAACAGCTGAC 60.108 60.000 23.35 14.31 37.45 3.51
2364 2879 1.267574 CCTAGCCCCTGAACAGCTGA 61.268 60.000 23.35 0.00 37.45 4.26
2365 2880 1.222936 CCTAGCCCCTGAACAGCTG 59.777 63.158 13.48 13.48 37.45 4.24
2366 2881 1.997874 CCCTAGCCCCTGAACAGCT 60.998 63.158 0.00 0.00 40.66 4.24
2367 2882 1.853250 AACCCTAGCCCCTGAACAGC 61.853 60.000 0.00 0.00 0.00 4.40
2368 2883 0.698818 AAACCCTAGCCCCTGAACAG 59.301 55.000 0.00 0.00 0.00 3.16
2369 2884 1.154430 AAAACCCTAGCCCCTGAACA 58.846 50.000 0.00 0.00 0.00 3.18
2370 2885 2.304221 AAAAACCCTAGCCCCTGAAC 57.696 50.000 0.00 0.00 0.00 3.18
2393 2908 3.137360 CCAAATCCACCCCCTTTCAAAAA 59.863 43.478 0.00 0.00 0.00 1.94
2394 2909 2.708325 CCAAATCCACCCCCTTTCAAAA 59.292 45.455 0.00 0.00 0.00 2.44
2395 2910 2.334023 CCAAATCCACCCCCTTTCAAA 58.666 47.619 0.00 0.00 0.00 2.69
2396 2911 1.484065 CCCAAATCCACCCCCTTTCAA 60.484 52.381 0.00 0.00 0.00 2.69
2397 2912 0.116143 CCCAAATCCACCCCCTTTCA 59.884 55.000 0.00 0.00 0.00 2.69
2398 2913 0.617535 CCCCAAATCCACCCCCTTTC 60.618 60.000 0.00 0.00 0.00 2.62
2399 2914 1.473844 CCCCAAATCCACCCCCTTT 59.526 57.895 0.00 0.00 0.00 3.11
2400 2915 2.566903 CCCCCAAATCCACCCCCTT 61.567 63.158 0.00 0.00 0.00 3.95
2401 2916 2.952359 CCCCCAAATCCACCCCCT 60.952 66.667 0.00 0.00 0.00 4.79
2402 2917 2.409984 AAACCCCCAAATCCACCCCC 62.410 60.000 0.00 0.00 0.00 5.40
2403 2918 0.474854 AAAACCCCCAAATCCACCCC 60.475 55.000 0.00 0.00 0.00 4.95
2404 2919 0.690192 CAAAACCCCCAAATCCACCC 59.310 55.000 0.00 0.00 0.00 4.61
2405 2920 1.429930 ACAAAACCCCCAAATCCACC 58.570 50.000 0.00 0.00 0.00 4.61
2406 2921 3.055458 CCATACAAAACCCCCAAATCCAC 60.055 47.826 0.00 0.00 0.00 4.02
2407 2922 3.177228 CCATACAAAACCCCCAAATCCA 58.823 45.455 0.00 0.00 0.00 3.41
2408 2923 3.178046 ACCATACAAAACCCCCAAATCC 58.822 45.455 0.00 0.00 0.00 3.01
2409 2924 4.901197 AACCATACAAAACCCCCAAATC 57.099 40.909 0.00 0.00 0.00 2.17
2410 2925 6.961361 ATTAACCATACAAAACCCCCAAAT 57.039 33.333 0.00 0.00 0.00 2.32
2411 2926 6.765355 AATTAACCATACAAAACCCCCAAA 57.235 33.333 0.00 0.00 0.00 3.28
2412 2927 7.038231 CCTTAATTAACCATACAAAACCCCCAA 60.038 37.037 0.00 0.00 0.00 4.12
2413 2928 6.440965 CCTTAATTAACCATACAAAACCCCCA 59.559 38.462 0.00 0.00 0.00 4.96
2414 2929 6.441284 ACCTTAATTAACCATACAAAACCCCC 59.559 38.462 0.00 0.00 0.00 5.40
2415 2930 7.038870 ACACCTTAATTAACCATACAAAACCCC 60.039 37.037 0.00 0.00 0.00 4.95
2416 2931 7.898918 ACACCTTAATTAACCATACAAAACCC 58.101 34.615 0.00 0.00 0.00 4.11
2417 2932 9.767228 AAACACCTTAATTAACCATACAAAACC 57.233 29.630 0.00 0.00 0.00 3.27
2436 2951 9.832445 CTACCTAACACAATATATGAAACACCT 57.168 33.333 0.00 0.00 0.00 4.00
2437 2952 8.557029 GCTACCTAACACAATATATGAAACACC 58.443 37.037 0.00 0.00 0.00 4.16
2438 2953 9.326413 AGCTACCTAACACAATATATGAAACAC 57.674 33.333 0.00 0.00 0.00 3.32
2478 2993 5.445964 GGAGATAAGAGAGGACACTTCTCT 58.554 45.833 7.43 7.43 43.56 3.10
2479 2994 4.274950 CGGAGATAAGAGAGGACACTTCTC 59.725 50.000 0.00 0.00 0.00 2.87
2480 2995 4.204012 CGGAGATAAGAGAGGACACTTCT 58.796 47.826 0.00 0.00 0.00 2.85
2481 2996 3.949113 ACGGAGATAAGAGAGGACACTTC 59.051 47.826 0.00 0.00 0.00 3.01
2482 2997 3.697045 CACGGAGATAAGAGAGGACACTT 59.303 47.826 0.00 0.00 0.00 3.16
2483 2998 3.283751 CACGGAGATAAGAGAGGACACT 58.716 50.000 0.00 0.00 0.00 3.55
2484 2999 2.223618 GCACGGAGATAAGAGAGGACAC 60.224 54.545 0.00 0.00 0.00 3.67
2485 3000 2.025155 GCACGGAGATAAGAGAGGACA 58.975 52.381 0.00 0.00 0.00 4.02
2486 3001 2.303175 AGCACGGAGATAAGAGAGGAC 58.697 52.381 0.00 0.00 0.00 3.85
2487 3002 2.690497 CAAGCACGGAGATAAGAGAGGA 59.310 50.000 0.00 0.00 0.00 3.71
2488 3003 2.223923 CCAAGCACGGAGATAAGAGAGG 60.224 54.545 0.00 0.00 0.00 3.69
2489 3004 2.428890 ACCAAGCACGGAGATAAGAGAG 59.571 50.000 0.00 0.00 0.00 3.20
2490 3005 2.427453 GACCAAGCACGGAGATAAGAGA 59.573 50.000 0.00 0.00 0.00 3.10
2491 3006 2.796383 CGACCAAGCACGGAGATAAGAG 60.796 54.545 0.00 0.00 0.00 2.85
2492 3007 1.134367 CGACCAAGCACGGAGATAAGA 59.866 52.381 0.00 0.00 0.00 2.10
2493 3008 1.134367 TCGACCAAGCACGGAGATAAG 59.866 52.381 0.00 0.00 0.00 1.73
2494 3009 1.135199 GTCGACCAAGCACGGAGATAA 60.135 52.381 3.51 0.00 0.00 1.75
2495 3010 0.454600 GTCGACCAAGCACGGAGATA 59.545 55.000 3.51 0.00 0.00 1.98
2496 3011 1.215647 GTCGACCAAGCACGGAGAT 59.784 57.895 3.51 0.00 0.00 2.75
2497 3012 2.649034 GTCGACCAAGCACGGAGA 59.351 61.111 3.51 0.00 0.00 3.71
2498 3013 2.805353 CGTCGACCAAGCACGGAG 60.805 66.667 10.58 0.00 0.00 4.63
2500 3015 3.620300 TAGCGTCGACCAAGCACGG 62.620 63.158 10.58 0.00 34.04 4.94
2501 3016 2.126618 TAGCGTCGACCAAGCACG 60.127 61.111 10.58 0.00 36.60 5.34
2502 3017 2.434134 CGTAGCGTCGACCAAGCAC 61.434 63.158 10.58 7.92 0.00 4.40
2503 3018 1.576451 TACGTAGCGTCGACCAAGCA 61.576 55.000 10.58 0.00 41.54 3.91
2504 3019 1.130458 GTACGTAGCGTCGACCAAGC 61.130 60.000 10.58 7.95 41.54 4.01
2505 3020 0.445436 AGTACGTAGCGTCGACCAAG 59.555 55.000 10.58 0.00 41.54 3.61
2506 3021 1.720805 TAGTACGTAGCGTCGACCAA 58.279 50.000 10.58 0.00 41.54 3.67
2507 3022 1.939974 ATAGTACGTAGCGTCGACCA 58.060 50.000 10.58 0.00 41.54 4.02
2508 3023 2.794910 TGTATAGTACGTAGCGTCGACC 59.205 50.000 10.58 2.76 41.54 4.79
2509 3024 4.637574 ATGTATAGTACGTAGCGTCGAC 57.362 45.455 5.18 5.18 41.54 4.20
2510 3025 5.699839 TCTATGTATAGTACGTAGCGTCGA 58.300 41.667 10.18 0.00 44.27 4.20
2511 3026 5.797434 TCTCTATGTATAGTACGTAGCGTCG 59.203 44.000 0.00 2.37 44.27 5.12
2512 3027 6.253298 CCTCTCTATGTATAGTACGTAGCGTC 59.747 46.154 0.00 0.00 44.27 5.19
2513 3028 6.098679 CCTCTCTATGTATAGTACGTAGCGT 58.901 44.000 0.00 0.00 44.27 5.07
2514 3029 5.005586 GCCTCTCTATGTATAGTACGTAGCG 59.994 48.000 0.00 5.97 44.27 4.26
2515 3030 5.294060 GGCCTCTCTATGTATAGTACGTAGC 59.706 48.000 0.00 0.00 44.27 3.58
2516 3031 5.816777 GGGCCTCTCTATGTATAGTACGTAG 59.183 48.000 0.84 9.16 45.38 3.51
2517 3032 5.486775 AGGGCCTCTCTATGTATAGTACGTA 59.513 44.000 0.00 0.00 0.00 3.57
2518 3033 4.289148 AGGGCCTCTCTATGTATAGTACGT 59.711 45.833 0.00 0.00 0.00 3.57
2519 3034 4.846040 AGGGCCTCTCTATGTATAGTACG 58.154 47.826 0.00 0.00 0.00 3.67
2520 3035 4.877251 CGAGGGCCTCTCTATGTATAGTAC 59.123 50.000 29.81 0.00 40.30 2.73
2521 3036 4.781621 TCGAGGGCCTCTCTATGTATAGTA 59.218 45.833 29.81 0.00 40.30 1.82
2522 3037 3.587951 TCGAGGGCCTCTCTATGTATAGT 59.412 47.826 29.81 0.00 40.30 2.12
2523 3038 3.942748 GTCGAGGGCCTCTCTATGTATAG 59.057 52.174 29.81 11.29 40.30 1.31
2524 3039 3.329814 TGTCGAGGGCCTCTCTATGTATA 59.670 47.826 29.81 4.53 40.30 1.47
2525 3040 2.108425 TGTCGAGGGCCTCTCTATGTAT 59.892 50.000 29.81 0.00 40.30 2.29
2526 3041 1.493446 TGTCGAGGGCCTCTCTATGTA 59.507 52.381 29.81 7.57 40.30 2.29
2527 3042 0.259065 TGTCGAGGGCCTCTCTATGT 59.741 55.000 29.81 0.00 40.30 2.29
2528 3043 0.671251 GTGTCGAGGGCCTCTCTATG 59.329 60.000 29.81 14.90 40.30 2.23
2529 3044 0.820074 CGTGTCGAGGGCCTCTCTAT 60.820 60.000 29.81 0.00 40.30 1.98
2530 3045 1.451567 CGTGTCGAGGGCCTCTCTA 60.452 63.158 29.81 13.43 40.30 2.43
2531 3046 2.752238 CGTGTCGAGGGCCTCTCT 60.752 66.667 29.81 0.00 40.30 3.10
2532 3047 4.500116 GCGTGTCGAGGGCCTCTC 62.500 72.222 29.81 21.90 39.10 3.20
2533 3048 3.640257 TAGCGTGTCGAGGGCCTCT 62.640 63.158 29.81 12.84 0.00 3.69
2534 3049 3.127352 CTAGCGTGTCGAGGGCCTC 62.127 68.421 24.06 24.06 0.00 4.70
2535 3050 3.141488 CTAGCGTGTCGAGGGCCT 61.141 66.667 5.25 5.25 0.00 5.19
2536 3051 4.874977 GCTAGCGTGTCGAGGGCC 62.875 72.222 0.00 0.00 0.00 5.80
2537 3052 2.478890 TAGCTAGCGTGTCGAGGGC 61.479 63.158 9.55 0.00 0.00 5.19
2538 3053 3.823402 TAGCTAGCGTGTCGAGGG 58.177 61.111 9.55 0.00 0.00 4.30


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.