Multiple sequence alignment - TraesCS5D01G508000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G508000 chr5D 100.000 2609 0 0 1 2609 533118368 533115760 0.000000e+00 4819.0
1 TraesCS5D01G508000 chr5D 88.136 177 18 2 22 195 521109848 521109672 9.460000e-50 207.0
2 TraesCS5D01G508000 chr4A 92.211 1900 115 23 637 2518 639021702 639023586 0.000000e+00 2658.0
3 TraesCS5D01G508000 chr4A 88.571 70 8 0 578 647 639020517 639020586 4.630000e-13 86.1
4 TraesCS5D01G508000 chr5B 92.056 1284 57 22 578 1829 673048231 673046961 0.000000e+00 1764.0
5 TraesCS5D01G508000 chr5B 82.546 487 48 19 22 472 598399744 598399259 6.770000e-106 394.0
6 TraesCS5D01G508000 chr5B 85.294 170 14 7 2103 2262 673046965 673046797 5.780000e-37 165.0
7 TraesCS5D01G508000 chr6B 82.149 577 60 26 22 566 391097050 391096485 3.060000e-124 455.0
8 TraesCS5D01G508000 chr3D 90.421 261 25 0 1847 2107 603709279 603709019 6.910000e-91 344.0
9 TraesCS5D01G508000 chr3D 89.354 263 28 0 1847 2109 87391996 87391734 5.380000e-87 331.0
10 TraesCS5D01G508000 chr3D 81.143 350 36 13 233 558 75139455 75139798 1.200000e-63 254.0
11 TraesCS5D01G508000 chr3A 89.591 269 28 0 1840 2108 12408729 12408997 2.490000e-90 342.0
12 TraesCS5D01G508000 chr1D 89.850 266 27 0 1844 2109 401204572 401204837 2.490000e-90 342.0
13 TraesCS5D01G508000 chr1D 80.857 350 37 16 233 558 404237844 404238187 5.580000e-62 248.0
14 TraesCS5D01G508000 chr3B 89.474 266 27 1 1844 2108 243240501 243240766 4.160000e-88 335.0
15 TraesCS5D01G508000 chr3B 80.286 350 39 12 233 558 424683352 424683009 1.210000e-58 237.0
16 TraesCS5D01G508000 chr3B 78.000 350 47 13 233 558 424697644 424697301 2.650000e-45 193.0
17 TraesCS5D01G508000 chr1B 88.930 271 30 0 1842 2112 58253326 58253056 4.160000e-88 335.0
18 TraesCS5D01G508000 chr7D 89.394 264 28 0 1844 2107 601122189 601122452 1.500000e-87 333.0
19 TraesCS5D01G508000 chr7D 80.899 356 37 14 228 558 10858279 10858628 4.310000e-63 252.0
20 TraesCS5D01G508000 chr5A 89.655 261 27 0 1847 2107 606255661 606255401 1.500000e-87 333.0
21 TraesCS5D01G508000 chr1A 87.410 278 28 5 22 294 2232732 2232457 1.950000e-81 313.0
22 TraesCS5D01G508000 chr1A 78.078 333 43 18 233 538 142103389 142103718 1.590000e-42 183.0
23 TraesCS5D01G508000 chr2D 81.429 350 35 13 233 558 444757934 444757591 2.580000e-65 259.0
24 TraesCS5D01G508000 chr4D 80.857 350 37 13 233 558 50421955 50421612 5.580000e-62 248.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G508000 chr5D 533115760 533118368 2608 True 4819.00 4819 100.000 1 2609 1 chr5D.!!$R2 2608
1 TraesCS5D01G508000 chr4A 639020517 639023586 3069 False 1372.05 2658 90.391 578 2518 2 chr4A.!!$F1 1940
2 TraesCS5D01G508000 chr5B 673046797 673048231 1434 True 964.50 1764 88.675 578 2262 2 chr5B.!!$R2 1684
3 TraesCS5D01G508000 chr6B 391096485 391097050 565 True 455.00 455 82.149 22 566 1 chr6B.!!$R1 544

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
337 353 0.030235 TAGATCACGAACGGATGGCG 59.97 55.0 0.0 0.0 0.0 5.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2168 3351 0.673644 GTGGTGGTCATGTCCTTCCG 60.674 60.0 10.43 0.0 0.0 4.3 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
37 38 3.527641 TTTTTGCCACCACCCGAC 58.472 55.556 0.00 0.00 0.00 4.79
38 39 2.482333 TTTTTGCCACCACCCGACG 61.482 57.895 0.00 0.00 0.00 5.12
73 77 3.805422 ACAACATCTGTTTTTGCTGCATG 59.195 39.130 1.84 0.00 32.99 4.06
75 79 2.629137 ACATCTGTTTTTGCTGCATGGA 59.371 40.909 1.84 0.00 0.00 3.41
76 80 2.798976 TCTGTTTTTGCTGCATGGAC 57.201 45.000 1.84 3.04 0.00 4.02
77 81 2.309613 TCTGTTTTTGCTGCATGGACT 58.690 42.857 1.84 0.00 0.00 3.85
88 92 5.118990 TGCTGCATGGACTAGAGTAATTTC 58.881 41.667 0.00 0.00 0.00 2.17
93 97 3.782046 TGGACTAGAGTAATTTCTGCGC 58.218 45.455 0.00 0.00 0.00 6.09
94 98 3.124560 GGACTAGAGTAATTTCTGCGCC 58.875 50.000 4.18 0.00 0.00 6.53
156 160 3.751621 GAAAAGCTTCCATCGACATGTG 58.248 45.455 1.15 0.00 0.00 3.21
197 201 2.263099 ATCCAGGGGAGAGGTGGAGG 62.263 65.000 0.00 0.00 43.61 4.30
200 204 0.842467 CAGGGGAGAGGTGGAGGTTT 60.842 60.000 0.00 0.00 0.00 3.27
201 205 0.842467 AGGGGAGAGGTGGAGGTTTG 60.842 60.000 0.00 0.00 0.00 2.93
202 206 1.002011 GGGAGAGGTGGAGGTTTGC 60.002 63.158 0.00 0.00 0.00 3.68
205 209 1.272147 GGAGAGGTGGAGGTTTGCATT 60.272 52.381 0.00 0.00 0.00 3.56
220 226 1.378382 CATTGGGGACGCATGACCA 60.378 57.895 0.00 0.00 0.00 4.02
230 236 2.438975 CATGACCATGCTGCCGGT 60.439 61.111 10.29 10.29 38.56 5.28
248 254 2.125753 GAGCTGCACCGGAGACAG 60.126 66.667 9.46 13.64 34.48 3.51
251 257 2.126307 CTGCACCGGAGACAGACG 60.126 66.667 9.46 0.00 33.10 4.18
260 266 1.076923 GAGACAGACGGGAGGGCTA 60.077 63.158 0.00 0.00 0.00 3.93
265 271 3.885521 GACGGGAGGGCTACGACG 61.886 72.222 0.00 0.00 0.00 5.12
281 287 1.844357 CGACGGCGAGTGTAAAGTATG 59.156 52.381 16.62 0.00 40.82 2.39
282 288 2.730090 CGACGGCGAGTGTAAAGTATGT 60.730 50.000 16.62 0.00 40.82 2.29
288 294 4.394795 GCGAGTGTAAAGTATGTTGCAAG 58.605 43.478 0.00 0.00 0.00 4.01
290 296 4.084066 CGAGTGTAAAGTATGTTGCAAGCA 60.084 41.667 0.00 1.30 0.00 3.91
316 332 1.442017 GAACGGCGTGGTTTGATGC 60.442 57.895 15.70 0.00 0.00 3.91
336 352 1.488527 GTAGATCACGAACGGATGGC 58.511 55.000 0.00 0.00 0.00 4.40
337 353 0.030235 TAGATCACGAACGGATGGCG 59.970 55.000 0.00 0.00 0.00 5.69
338 354 1.226859 GATCACGAACGGATGGCGA 60.227 57.895 0.00 0.00 0.00 5.54
339 355 1.209275 GATCACGAACGGATGGCGAG 61.209 60.000 0.00 0.00 0.00 5.03
340 356 1.663379 ATCACGAACGGATGGCGAGA 61.663 55.000 0.00 0.00 0.00 4.04
341 357 2.158959 CACGAACGGATGGCGAGAC 61.159 63.158 0.00 0.00 0.00 3.36
342 358 2.949678 CGAACGGATGGCGAGACG 60.950 66.667 0.00 0.00 0.00 4.18
343 359 2.582498 GAACGGATGGCGAGACGG 60.582 66.667 0.00 0.00 0.00 4.79
344 360 3.352338 GAACGGATGGCGAGACGGT 62.352 63.158 0.00 0.00 0.00 4.83
345 361 2.830704 GAACGGATGGCGAGACGGTT 62.831 60.000 0.00 0.00 0.00 4.44
346 362 1.597797 AACGGATGGCGAGACGGTTA 61.598 55.000 0.00 0.00 0.00 2.85
347 363 1.299165 CGGATGGCGAGACGGTTAG 60.299 63.158 0.00 0.00 0.00 2.34
348 364 1.814527 GGATGGCGAGACGGTTAGT 59.185 57.895 0.00 0.00 0.00 2.24
349 365 0.527817 GGATGGCGAGACGGTTAGTG 60.528 60.000 0.00 0.00 0.00 2.74
350 366 0.172803 GATGGCGAGACGGTTAGTGT 59.827 55.000 0.00 0.00 0.00 3.55
351 367 0.108804 ATGGCGAGACGGTTAGTGTG 60.109 55.000 0.00 0.00 0.00 3.82
352 368 1.445582 GGCGAGACGGTTAGTGTGG 60.446 63.158 0.00 0.00 0.00 4.17
353 369 1.288127 GCGAGACGGTTAGTGTGGT 59.712 57.895 0.00 0.00 0.00 4.16
354 370 0.731855 GCGAGACGGTTAGTGTGGTC 60.732 60.000 0.00 0.00 0.00 4.02
355 371 0.453950 CGAGACGGTTAGTGTGGTCG 60.454 60.000 0.00 0.00 34.68 4.79
356 372 0.877071 GAGACGGTTAGTGTGGTCGA 59.123 55.000 0.00 0.00 34.68 4.20
357 373 0.595095 AGACGGTTAGTGTGGTCGAC 59.405 55.000 7.13 7.13 34.68 4.20
358 374 0.727122 GACGGTTAGTGTGGTCGACG 60.727 60.000 9.92 0.00 0.00 5.12
359 375 1.165907 ACGGTTAGTGTGGTCGACGA 61.166 55.000 9.92 1.86 0.00 4.20
360 376 0.169672 CGGTTAGTGTGGTCGACGAT 59.830 55.000 9.92 0.00 0.00 3.73
361 377 1.625616 GGTTAGTGTGGTCGACGATG 58.374 55.000 9.92 0.00 0.00 3.84
362 378 1.625616 GTTAGTGTGGTCGACGATGG 58.374 55.000 9.92 0.00 0.00 3.51
363 379 0.108992 TTAGTGTGGTCGACGATGGC 60.109 55.000 9.92 0.42 0.00 4.40
364 380 2.261172 TAGTGTGGTCGACGATGGCG 62.261 60.000 9.92 0.00 44.79 5.69
372 388 4.891727 GACGATGGCGCCGGTGAT 62.892 66.667 23.90 9.73 42.48 3.06
376 392 4.802051 ATGGCGCCGGTGATGCTT 62.802 61.111 23.90 0.13 0.00 3.91
380 396 3.554692 CGCCGGTGATGCTTCGAC 61.555 66.667 10.20 0.00 0.00 4.20
381 397 3.554692 GCCGGTGATGCTTCGACG 61.555 66.667 1.90 8.23 0.00 5.12
382 398 2.180769 CCGGTGATGCTTCGACGA 59.819 61.111 14.47 0.00 0.00 4.20
383 399 2.158959 CCGGTGATGCTTCGACGAC 61.159 63.158 14.47 0.00 0.00 4.34
384 400 2.497092 CGGTGATGCTTCGACGACG 61.497 63.158 0.00 0.00 41.26 5.12
385 401 2.158959 GGTGATGCTTCGACGACGG 61.159 63.158 7.55 0.00 40.21 4.79
386 402 2.506217 TGATGCTTCGACGACGGC 60.506 61.111 7.55 13.12 40.21 5.68
387 403 3.255379 GATGCTTCGACGACGGCC 61.255 66.667 16.12 0.00 40.21 6.13
388 404 3.982372 GATGCTTCGACGACGGCCA 62.982 63.158 16.12 2.94 40.21 5.36
389 405 3.371097 ATGCTTCGACGACGGCCAT 62.371 57.895 16.12 5.12 40.21 4.40
390 406 3.554692 GCTTCGACGACGGCCATG 61.555 66.667 2.24 0.00 40.21 3.66
391 407 2.885644 CTTCGACGACGGCCATGG 60.886 66.667 7.63 7.63 40.21 3.66
392 408 3.350909 CTTCGACGACGGCCATGGA 62.351 63.158 18.40 0.00 40.21 3.41
393 409 3.350909 TTCGACGACGGCCATGGAG 62.351 63.158 18.40 11.25 40.21 3.86
394 410 3.822192 CGACGACGGCCATGGAGA 61.822 66.667 18.40 0.00 35.72 3.71
395 411 2.105128 GACGACGGCCATGGAGAG 59.895 66.667 18.40 8.01 0.00 3.20
396 412 2.362503 ACGACGGCCATGGAGAGA 60.363 61.111 18.40 0.00 0.00 3.10
397 413 2.105128 CGACGGCCATGGAGAGAC 59.895 66.667 18.40 4.97 0.00 3.36
398 414 2.105128 GACGGCCATGGAGAGACG 59.895 66.667 18.40 13.27 0.00 4.18
399 415 3.432051 GACGGCCATGGAGAGACGG 62.432 68.421 18.40 4.04 0.00 4.79
400 416 4.899239 CGGCCATGGAGAGACGGC 62.899 72.222 18.40 0.00 44.10 5.68
401 417 4.899239 GGCCATGGAGAGACGGCG 62.899 72.222 18.40 4.80 45.85 6.46
402 418 4.148825 GCCATGGAGAGACGGCGT 62.149 66.667 18.40 14.65 34.26 5.68
403 419 2.202797 CCATGGAGAGACGGCGTG 60.203 66.667 21.19 0.00 0.00 5.34
404 420 2.887568 CATGGAGAGACGGCGTGC 60.888 66.667 21.19 9.66 0.00 5.34
405 421 3.071206 ATGGAGAGACGGCGTGCT 61.071 61.111 21.19 15.21 0.00 4.40
406 422 3.362399 ATGGAGAGACGGCGTGCTG 62.362 63.158 21.19 0.00 0.00 4.41
408 424 4.427661 GAGAGACGGCGTGCTGCT 62.428 66.667 21.19 8.26 45.43 4.24
417 433 3.476646 CGTGCTGCTGCTGACGAG 61.477 66.667 19.30 3.33 39.82 4.18
418 434 3.117171 GTGCTGCTGCTGACGAGG 61.117 66.667 17.00 0.00 40.48 4.63
425 441 2.965783 TGCTGACGAGGCAGTCTC 59.034 61.111 7.87 0.00 41.47 3.36
445 461 3.863407 GGGGGCAGTTTGTCTAGAG 57.137 57.895 0.00 0.00 0.00 2.43
446 462 0.393132 GGGGGCAGTTTGTCTAGAGC 60.393 60.000 0.00 0.00 0.00 4.09
447 463 0.324943 GGGGCAGTTTGTCTAGAGCA 59.675 55.000 0.00 0.00 0.00 4.26
448 464 1.677217 GGGGCAGTTTGTCTAGAGCAG 60.677 57.143 0.00 0.00 0.00 4.24
449 465 1.677217 GGGCAGTTTGTCTAGAGCAGG 60.677 57.143 0.00 0.00 0.00 4.85
450 466 1.002544 GGCAGTTTGTCTAGAGCAGGT 59.997 52.381 0.00 0.00 0.00 4.00
451 467 2.342179 GCAGTTTGTCTAGAGCAGGTC 58.658 52.381 0.00 0.00 0.00 3.85
452 468 2.289072 GCAGTTTGTCTAGAGCAGGTCA 60.289 50.000 1.66 0.00 0.00 4.02
453 469 3.803715 GCAGTTTGTCTAGAGCAGGTCAA 60.804 47.826 1.66 0.00 0.00 3.18
454 470 3.743396 CAGTTTGTCTAGAGCAGGTCAAC 59.257 47.826 1.66 0.00 0.00 3.18
455 471 2.724977 TTGTCTAGAGCAGGTCAACG 57.275 50.000 1.66 0.00 0.00 4.10
456 472 0.243907 TGTCTAGAGCAGGTCAACGC 59.756 55.000 1.66 0.00 0.00 4.84
457 473 0.528470 GTCTAGAGCAGGTCAACGCT 59.472 55.000 1.66 0.00 42.42 5.07
458 474 0.528017 TCTAGAGCAGGTCAACGCTG 59.472 55.000 1.66 0.00 38.99 5.18
459 475 0.528017 CTAGAGCAGGTCAACGCTGA 59.472 55.000 1.66 0.00 38.99 4.26
460 476 1.135915 CTAGAGCAGGTCAACGCTGAT 59.864 52.381 1.66 0.00 38.99 2.90
461 477 0.322975 AGAGCAGGTCAACGCTGATT 59.677 50.000 1.66 0.00 38.99 2.57
462 478 1.160137 GAGCAGGTCAACGCTGATTT 58.840 50.000 0.00 0.00 38.99 2.17
463 479 1.129437 GAGCAGGTCAACGCTGATTTC 59.871 52.381 0.00 0.00 38.99 2.17
464 480 0.169009 GCAGGTCAACGCTGATTTCC 59.831 55.000 0.00 0.00 33.05 3.13
465 481 1.522668 CAGGTCAACGCTGATTTCCA 58.477 50.000 0.00 0.00 33.05 3.53
466 482 2.086869 CAGGTCAACGCTGATTTCCAT 58.913 47.619 0.00 0.00 33.05 3.41
467 483 2.096496 CAGGTCAACGCTGATTTCCATC 59.904 50.000 0.00 0.00 33.05 3.51
468 484 2.026822 AGGTCAACGCTGATTTCCATCT 60.027 45.455 0.00 0.00 33.05 2.90
469 485 2.352960 GGTCAACGCTGATTTCCATCTC 59.647 50.000 0.00 0.00 33.05 2.75
470 486 3.265791 GTCAACGCTGATTTCCATCTCT 58.734 45.455 0.00 0.00 33.05 3.10
471 487 3.308323 GTCAACGCTGATTTCCATCTCTC 59.692 47.826 0.00 0.00 33.05 3.20
472 488 3.196469 TCAACGCTGATTTCCATCTCTCT 59.804 43.478 0.00 0.00 0.00 3.10
473 489 3.176552 ACGCTGATTTCCATCTCTCTG 57.823 47.619 0.00 0.00 0.00 3.35
474 490 2.158986 ACGCTGATTTCCATCTCTCTGG 60.159 50.000 0.00 0.00 37.66 3.86
475 491 2.102084 CGCTGATTTCCATCTCTCTGGA 59.898 50.000 0.00 0.00 43.62 3.86
476 492 3.244146 CGCTGATTTCCATCTCTCTGGAT 60.244 47.826 0.00 0.00 44.66 3.41
477 493 4.317488 GCTGATTTCCATCTCTCTGGATC 58.683 47.826 0.00 0.00 44.66 3.36
478 494 4.803588 GCTGATTTCCATCTCTCTGGATCC 60.804 50.000 4.20 4.20 44.66 3.36
479 495 4.301205 TGATTTCCATCTCTCTGGATCCA 58.699 43.478 15.27 15.27 44.66 3.41
480 496 4.723285 TGATTTCCATCTCTCTGGATCCAA 59.277 41.667 17.00 0.00 44.66 3.53
481 497 5.371769 TGATTTCCATCTCTCTGGATCCAAT 59.628 40.000 17.00 2.62 44.66 3.16
482 498 4.970860 TTCCATCTCTCTGGATCCAATC 57.029 45.455 17.00 0.00 44.66 2.67
483 499 4.210611 TCCATCTCTCTGGATCCAATCT 57.789 45.455 17.00 0.00 40.43 2.40
484 500 5.345307 TCCATCTCTCTGGATCCAATCTA 57.655 43.478 17.00 0.82 40.43 1.98
485 501 5.720162 TCCATCTCTCTGGATCCAATCTAA 58.280 41.667 17.00 2.00 40.43 2.10
486 502 5.779260 TCCATCTCTCTGGATCCAATCTAAG 59.221 44.000 17.00 9.11 40.43 2.18
487 503 5.779260 CCATCTCTCTGGATCCAATCTAAGA 59.221 44.000 17.00 13.88 38.69 2.10
488 504 6.071221 CCATCTCTCTGGATCCAATCTAAGAG 60.071 46.154 17.00 19.57 38.69 2.85
489 505 5.392995 TCTCTCTGGATCCAATCTAAGAGG 58.607 45.833 23.70 16.23 38.96 3.69
490 506 5.135191 TCTCTCTGGATCCAATCTAAGAGGA 59.865 44.000 23.70 17.52 38.96 3.71
491 507 5.781827 TCTCTGGATCCAATCTAAGAGGAA 58.218 41.667 17.00 0.18 38.96 3.36
492 508 6.388814 TCTCTGGATCCAATCTAAGAGGAAT 58.611 40.000 17.00 0.00 38.96 3.01
493 509 6.496565 TCTCTGGATCCAATCTAAGAGGAATC 59.503 42.308 17.00 0.00 38.96 2.52
494 510 6.388814 TCTGGATCCAATCTAAGAGGAATCT 58.611 40.000 17.00 0.00 34.62 2.40
495 511 6.269538 TCTGGATCCAATCTAAGAGGAATCTG 59.730 42.308 17.00 0.00 34.62 2.90
496 512 5.309020 TGGATCCAATCTAAGAGGAATCTGG 59.691 44.000 13.46 0.00 34.62 3.86
497 513 5.280419 GGATCCAATCTAAGAGGAATCTGGG 60.280 48.000 6.95 0.00 34.62 4.45
498 514 4.895836 TCCAATCTAAGAGGAATCTGGGA 58.104 43.478 0.00 0.00 0.00 4.37
499 515 5.288687 TCCAATCTAAGAGGAATCTGGGAA 58.711 41.667 0.00 0.00 0.00 3.97
500 516 5.731187 TCCAATCTAAGAGGAATCTGGGAAA 59.269 40.000 0.00 0.00 0.00 3.13
501 517 6.060788 CCAATCTAAGAGGAATCTGGGAAAG 58.939 44.000 0.00 0.00 0.00 2.62
502 518 5.903198 ATCTAAGAGGAATCTGGGAAAGG 57.097 43.478 0.00 0.00 0.00 3.11
503 519 4.040755 TCTAAGAGGAATCTGGGAAAGGG 58.959 47.826 0.00 0.00 0.00 3.95
504 520 2.668850 AGAGGAATCTGGGAAAGGGA 57.331 50.000 0.00 0.00 0.00 4.20
505 521 2.934722 AGAGGAATCTGGGAAAGGGAA 58.065 47.619 0.00 0.00 0.00 3.97
506 522 3.269034 AGAGGAATCTGGGAAAGGGAAA 58.731 45.455 0.00 0.00 0.00 3.13
507 523 3.662642 AGAGGAATCTGGGAAAGGGAAAA 59.337 43.478 0.00 0.00 0.00 2.29
508 524 4.019858 GAGGAATCTGGGAAAGGGAAAAG 58.980 47.826 0.00 0.00 0.00 2.27
509 525 3.662642 AGGAATCTGGGAAAGGGAAAAGA 59.337 43.478 0.00 0.00 0.00 2.52
510 526 4.296044 AGGAATCTGGGAAAGGGAAAAGAT 59.704 41.667 0.00 0.00 0.00 2.40
511 527 4.403752 GGAATCTGGGAAAGGGAAAAGATG 59.596 45.833 0.00 0.00 0.00 2.90
512 528 4.953781 ATCTGGGAAAGGGAAAAGATGA 57.046 40.909 0.00 0.00 0.00 2.92
513 529 4.034285 TCTGGGAAAGGGAAAAGATGAC 57.966 45.455 0.00 0.00 0.00 3.06
514 530 2.749621 CTGGGAAAGGGAAAAGATGACG 59.250 50.000 0.00 0.00 0.00 4.35
515 531 2.107552 TGGGAAAGGGAAAAGATGACGT 59.892 45.455 0.00 0.00 0.00 4.34
516 532 2.488153 GGGAAAGGGAAAAGATGACGTG 59.512 50.000 0.00 0.00 0.00 4.49
517 533 2.488153 GGAAAGGGAAAAGATGACGTGG 59.512 50.000 0.00 0.00 0.00 4.94
518 534 2.200373 AAGGGAAAAGATGACGTGGG 57.800 50.000 0.00 0.00 0.00 4.61
519 535 1.358152 AGGGAAAAGATGACGTGGGA 58.642 50.000 0.00 0.00 0.00 4.37
520 536 1.279271 AGGGAAAAGATGACGTGGGAG 59.721 52.381 0.00 0.00 0.00 4.30
521 537 1.003233 GGGAAAAGATGACGTGGGAGT 59.997 52.381 0.00 0.00 0.00 3.85
522 538 2.552373 GGGAAAAGATGACGTGGGAGTT 60.552 50.000 0.00 0.00 0.00 3.01
523 539 2.742589 GGAAAAGATGACGTGGGAGTTC 59.257 50.000 0.00 0.00 0.00 3.01
524 540 3.557264 GGAAAAGATGACGTGGGAGTTCT 60.557 47.826 0.00 0.00 0.00 3.01
525 541 4.322499 GGAAAAGATGACGTGGGAGTTCTA 60.322 45.833 0.00 0.00 0.00 2.10
526 542 4.884668 AAAGATGACGTGGGAGTTCTAA 57.115 40.909 0.00 0.00 0.00 2.10
527 543 5.422214 AAAGATGACGTGGGAGTTCTAAT 57.578 39.130 0.00 0.00 0.00 1.73
528 544 4.657436 AGATGACGTGGGAGTTCTAATC 57.343 45.455 0.00 0.00 0.00 1.75
529 545 4.282496 AGATGACGTGGGAGTTCTAATCT 58.718 43.478 0.00 0.00 0.00 2.40
530 546 5.446860 AGATGACGTGGGAGTTCTAATCTA 58.553 41.667 0.00 0.00 0.00 1.98
531 547 5.892119 AGATGACGTGGGAGTTCTAATCTAA 59.108 40.000 0.00 0.00 0.00 2.10
532 548 5.320549 TGACGTGGGAGTTCTAATCTAAC 57.679 43.478 0.00 0.00 0.00 2.34
533 549 4.768448 TGACGTGGGAGTTCTAATCTAACA 59.232 41.667 0.00 0.00 0.00 2.41
534 550 5.105877 TGACGTGGGAGTTCTAATCTAACAG 60.106 44.000 0.00 0.00 0.00 3.16
535 551 4.113354 CGTGGGAGTTCTAATCTAACAGC 58.887 47.826 0.00 0.00 0.00 4.40
536 552 4.443621 GTGGGAGTTCTAATCTAACAGCC 58.556 47.826 0.00 0.00 0.00 4.85
537 553 4.081087 GTGGGAGTTCTAATCTAACAGCCA 60.081 45.833 0.00 0.00 0.00 4.75
538 554 4.081087 TGGGAGTTCTAATCTAACAGCCAC 60.081 45.833 0.00 0.00 0.00 5.01
539 555 4.081087 GGGAGTTCTAATCTAACAGCCACA 60.081 45.833 0.00 0.00 0.00 4.17
540 556 5.488341 GGAGTTCTAATCTAACAGCCACAA 58.512 41.667 0.00 0.00 0.00 3.33
541 557 5.938125 GGAGTTCTAATCTAACAGCCACAAA 59.062 40.000 0.00 0.00 0.00 2.83
542 558 6.599638 GGAGTTCTAATCTAACAGCCACAAAT 59.400 38.462 0.00 0.00 0.00 2.32
543 559 7.383102 AGTTCTAATCTAACAGCCACAAATG 57.617 36.000 0.00 0.00 0.00 2.32
544 560 7.168219 AGTTCTAATCTAACAGCCACAAATGA 58.832 34.615 0.00 0.00 0.00 2.57
545 561 7.665559 AGTTCTAATCTAACAGCCACAAATGAA 59.334 33.333 0.00 0.00 0.00 2.57
546 562 7.615582 TCTAATCTAACAGCCACAAATGAAG 57.384 36.000 0.00 0.00 0.00 3.02
547 563 7.168219 TCTAATCTAACAGCCACAAATGAAGT 58.832 34.615 0.00 0.00 0.00 3.01
548 564 8.318412 TCTAATCTAACAGCCACAAATGAAGTA 58.682 33.333 0.00 0.00 0.00 2.24
549 565 7.759489 AATCTAACAGCCACAAATGAAGTAA 57.241 32.000 0.00 0.00 0.00 2.24
550 566 7.944729 ATCTAACAGCCACAAATGAAGTAAT 57.055 32.000 0.00 0.00 0.00 1.89
551 567 7.377766 TCTAACAGCCACAAATGAAGTAATC 57.622 36.000 0.00 0.00 0.00 1.75
552 568 5.391312 AACAGCCACAAATGAAGTAATCC 57.609 39.130 0.00 0.00 0.00 3.01
553 569 4.406456 ACAGCCACAAATGAAGTAATCCA 58.594 39.130 0.00 0.00 0.00 3.41
554 570 4.460382 ACAGCCACAAATGAAGTAATCCAG 59.540 41.667 0.00 0.00 0.00 3.86
555 571 3.445096 AGCCACAAATGAAGTAATCCAGC 59.555 43.478 0.00 0.00 0.00 4.85
556 572 3.731867 GCCACAAATGAAGTAATCCAGCG 60.732 47.826 0.00 0.00 0.00 5.18
557 573 3.181497 CCACAAATGAAGTAATCCAGCGG 60.181 47.826 0.00 0.00 0.00 5.52
558 574 2.423538 ACAAATGAAGTAATCCAGCGGC 59.576 45.455 0.00 0.00 0.00 6.53
559 575 2.684881 CAAATGAAGTAATCCAGCGGCT 59.315 45.455 0.00 0.00 0.00 5.52
560 576 1.959042 ATGAAGTAATCCAGCGGCTG 58.041 50.000 22.84 22.84 0.00 4.85
569 585 3.774528 CAGCGGCTGGCCTGAGTA 61.775 66.667 22.11 0.00 45.17 2.59
570 586 3.465403 AGCGGCTGGCCTGAGTAG 61.465 66.667 14.77 0.00 45.17 2.57
571 587 3.775654 GCGGCTGGCCTGAGTAGT 61.776 66.667 14.77 0.00 34.80 2.73
572 588 2.496817 CGGCTGGCCTGAGTAGTC 59.503 66.667 14.77 0.00 0.00 2.59
573 589 2.496817 GGCTGGCCTGAGTAGTCG 59.503 66.667 14.77 0.00 0.00 4.18
574 590 2.202810 GCTGGCCTGAGTAGTCGC 60.203 66.667 14.77 0.00 0.00 5.19
575 591 2.496817 CTGGCCTGAGTAGTCGCC 59.503 66.667 3.32 9.01 41.99 5.54
576 592 2.037367 TGGCCTGAGTAGTCGCCT 59.963 61.111 15.10 0.00 42.15 5.52
618 634 3.257624 ACCTTCGTTTGTACTCCTAGTGG 59.742 47.826 0.00 0.00 0.00 4.00
641 1782 6.538021 TGGAAACAACCATCATTGTCAAAAAG 59.462 34.615 0.00 0.00 42.01 2.27
642 1783 6.760770 GGAAACAACCATCATTGTCAAAAAGA 59.239 34.615 0.00 0.00 42.01 2.52
644 1785 8.558973 AAACAACCATCATTGTCAAAAAGAAA 57.441 26.923 0.00 0.00 42.01 2.52
646 1787 8.200364 ACAACCATCATTGTCAAAAAGAAAAG 57.800 30.769 0.00 0.00 38.44 2.27
696 1839 0.387202 CACCTAGCCCTCGATGTCAG 59.613 60.000 0.00 0.00 0.00 3.51
712 1855 5.106791 CGATGTCAGGATCAAATTAGGCATC 60.107 44.000 0.00 0.00 0.00 3.91
836 1998 2.355837 CACACTCCCGACCACACG 60.356 66.667 0.00 0.00 0.00 4.49
1056 2226 1.215679 TCTCCTCCCTCCTCGTCCTT 61.216 60.000 0.00 0.00 0.00 3.36
1440 2616 1.979155 CCTCTCCGAGCAGGACACA 60.979 63.158 7.71 0.00 45.98 3.72
1467 2643 3.827898 GACGAGACCTGCCGGGAG 61.828 72.222 17.41 17.41 38.76 4.30
1515 2691 1.807573 GCTCCGCAAGAACCTCGAG 60.808 63.158 5.13 5.13 43.02 4.04
1614 2790 2.288702 CGCTATTCTGCCATGAGCTAGT 60.289 50.000 0.00 0.00 44.23 2.57
1658 2834 8.923683 CGATATACCATTCATGATGAGCATATC 58.076 37.037 0.00 6.64 38.03 1.63
1679 2856 9.063615 CATATCTATATATGTACGCACCCACTA 57.936 37.037 0.00 0.00 40.03 2.74
1722 2899 9.610705 CTCCGTCTTAGCTATATATAGGTTGTA 57.389 37.037 25.23 8.86 41.04 2.41
1851 3033 5.869649 ACAAAGCTTTTGTGTATTCCCTT 57.130 34.783 9.53 0.00 0.00 3.95
1885 3067 8.661352 AAAGGATGTACTTTCAATTTTGTTGG 57.339 30.769 0.00 0.00 35.92 3.77
1895 3077 8.879260 CTTTCAATTTTGTTGGAAAGTCAAAC 57.121 30.769 0.00 0.00 40.64 2.93
2013 3195 7.721842 TCATACTCCTATTTGGTTTCACAAACA 59.278 33.333 1.78 0.00 42.51 2.83
2044 3226 4.993029 TTTTGGACAAACTCGGTCAAAT 57.007 36.364 0.00 0.00 37.00 2.32
2048 3230 4.677584 TGGACAAACTCGGTCAAATTTTG 58.322 39.130 2.59 2.59 37.00 2.44
2050 3232 4.976116 GGACAAACTCGGTCAAATTTTGAG 59.024 41.667 12.02 3.67 41.01 3.02
2076 3258 4.464069 TTTGACCTTCCAACAAAGTTGG 57.536 40.909 20.09 20.09 40.87 3.77
2085 3267 3.949113 TCCAACAAAGTTGGAAGTACACC 59.051 43.478 24.83 0.00 44.90 4.16
2093 3275 4.862371 AGTTGGAAGTACACCCTTTGAAA 58.138 39.130 0.00 0.00 0.00 2.69
2096 3278 4.457466 TGGAAGTACACCCTTTGAAAGAC 58.543 43.478 6.49 0.00 0.00 3.01
2097 3279 4.080243 TGGAAGTACACCCTTTGAAAGACA 60.080 41.667 6.49 0.00 0.00 3.41
2101 3283 3.214696 ACACCCTTTGAAAGACAGAGG 57.785 47.619 6.49 1.05 46.54 3.69
2112 3294 6.282199 TGAAAGACAGAGGGAGTACATAAC 57.718 41.667 0.00 0.00 0.00 1.89
2151 3333 1.073284 ACTTACTGGGCCAACATCGTT 59.927 47.619 8.04 0.00 0.00 3.85
2165 3348 7.167468 GGCCAACATCGTTCACATTTAATATTC 59.833 37.037 0.00 0.00 0.00 1.75
2166 3349 7.915397 GCCAACATCGTTCACATTTAATATTCT 59.085 33.333 0.00 0.00 0.00 2.40
2167 3350 9.225201 CCAACATCGTTCACATTTAATATTCTG 57.775 33.333 0.00 0.00 0.00 3.02
2168 3351 8.736742 CAACATCGTTCACATTTAATATTCTGC 58.263 33.333 0.00 0.00 0.00 4.26
2169 3352 7.125755 ACATCGTTCACATTTAATATTCTGCG 58.874 34.615 0.00 0.00 0.00 5.18
2217 3408 8.498054 TTCAACAAGAATAAATTTGCACCAAA 57.502 26.923 0.00 0.00 37.75 3.28
2305 3497 2.225267 GGTGGAAAGGAATTCTTGGGGA 60.225 50.000 5.23 0.00 38.18 4.81
2314 3506 4.968719 AGGAATTCTTGGGGAAACAAGTTT 59.031 37.500 5.23 0.00 46.11 2.66
2321 3513 6.140377 TCTTGGGGAAACAAGTTTAAGGAAT 58.860 36.000 5.92 0.00 46.11 3.01
2350 3542 7.575414 TCCTGCAAGTTAAACAATCTTTACA 57.425 32.000 0.00 0.00 0.00 2.41
2370 3562 3.230134 CATGGGGAGAGACAACCAAAAA 58.770 45.455 0.00 0.00 36.44 1.94
2430 3622 7.545362 AACTCATGAGAATTCTAATGGTTCG 57.455 36.000 29.27 16.78 35.85 3.95
2432 3624 6.536582 ACTCATGAGAATTCTAATGGTTCGTG 59.463 38.462 29.27 15.58 35.85 4.35
2525 3717 4.766375 TCCTAAAGGATTGAACTTAGCGG 58.234 43.478 0.00 0.00 39.78 5.52
2526 3718 4.468510 TCCTAAAGGATTGAACTTAGCGGA 59.531 41.667 0.00 0.00 39.78 5.54
2527 3719 5.046159 TCCTAAAGGATTGAACTTAGCGGAA 60.046 40.000 0.00 0.00 39.78 4.30
2528 3720 5.294552 CCTAAAGGATTGAACTTAGCGGAAG 59.705 44.000 0.00 0.35 38.14 3.46
2529 3721 7.075073 CCTAAAGGATTGAACTTAGCGGAAGT 61.075 42.308 1.58 1.58 43.77 3.01
2530 3722 9.005198 CCTAAAGGATTGAACTTAGCGGAAGTG 62.005 44.444 7.69 0.00 42.10 3.16
2542 3734 7.954906 CTTAGCGGAAGTGATTATTTTTCAC 57.045 36.000 0.00 0.00 43.05 3.18
2543 3735 5.957842 AGCGGAAGTGATTATTTTTCACA 57.042 34.783 6.59 0.00 44.73 3.58
2544 3736 5.942872 AGCGGAAGTGATTATTTTTCACAG 58.057 37.500 6.59 0.00 44.73 3.66
2545 3737 5.705441 AGCGGAAGTGATTATTTTTCACAGA 59.295 36.000 6.59 0.00 44.73 3.41
2546 3738 6.206634 AGCGGAAGTGATTATTTTTCACAGAA 59.793 34.615 6.59 0.00 44.73 3.02
2547 3739 6.305638 GCGGAAGTGATTATTTTTCACAGAAC 59.694 38.462 6.59 0.00 44.73 3.01
2548 3740 7.359595 CGGAAGTGATTATTTTTCACAGAACA 58.640 34.615 6.59 0.00 44.73 3.18
2549 3741 8.023128 CGGAAGTGATTATTTTTCACAGAACAT 58.977 33.333 6.59 0.00 44.73 2.71
2550 3742 9.132521 GGAAGTGATTATTTTTCACAGAACATG 57.867 33.333 6.59 0.00 44.73 3.21
2551 3743 9.897744 GAAGTGATTATTTTTCACAGAACATGA 57.102 29.630 0.00 0.00 44.73 3.07
2555 3747 9.859427 TGATTATTTTTCACAGAACATGAATCC 57.141 29.630 0.00 0.00 36.02 3.01
2558 3750 9.695526 TTATTTTTCACAGAACATGAATCCTTG 57.304 29.630 0.00 0.00 36.02 3.61
2559 3751 6.957920 TTTTCACAGAACATGAATCCTTGA 57.042 33.333 0.00 0.51 36.02 3.02
2560 3752 7.528996 TTTTCACAGAACATGAATCCTTGAT 57.471 32.000 0.00 0.00 36.02 2.57
2561 3753 6.505044 TTCACAGAACATGAATCCTTGATG 57.495 37.500 0.00 0.00 31.11 3.07
2562 3754 5.563592 TCACAGAACATGAATCCTTGATGT 58.436 37.500 0.00 0.00 31.54 3.06
2563 3755 6.005823 TCACAGAACATGAATCCTTGATGTT 58.994 36.000 0.00 4.69 41.82 2.71
2564 3756 6.491062 TCACAGAACATGAATCCTTGATGTTT 59.509 34.615 0.00 0.00 39.77 2.83
2565 3757 7.014518 TCACAGAACATGAATCCTTGATGTTTT 59.985 33.333 0.00 0.00 39.77 2.43
2566 3758 7.327761 CACAGAACATGAATCCTTGATGTTTTC 59.672 37.037 0.00 0.00 39.77 2.29
2567 3759 7.232127 ACAGAACATGAATCCTTGATGTTTTCT 59.768 33.333 0.00 0.00 39.77 2.52
2568 3760 8.086522 CAGAACATGAATCCTTGATGTTTTCTT 58.913 33.333 0.00 0.00 39.77 2.52
2569 3761 8.645110 AGAACATGAATCCTTGATGTTTTCTTT 58.355 29.630 0.00 0.00 39.77 2.52
2570 3762 8.822652 AACATGAATCCTTGATGTTTTCTTTC 57.177 30.769 0.00 0.00 37.06 2.62
2571 3763 8.186709 ACATGAATCCTTGATGTTTTCTTTCT 57.813 30.769 0.00 0.00 0.00 2.52
2572 3764 8.645110 ACATGAATCCTTGATGTTTTCTTTCTT 58.355 29.630 0.00 0.00 0.00 2.52
2573 3765 9.485206 CATGAATCCTTGATGTTTTCTTTCTTT 57.515 29.630 0.00 0.00 0.00 2.52
2574 3766 9.702494 ATGAATCCTTGATGTTTTCTTTCTTTC 57.298 29.630 0.00 0.00 0.00 2.62
2575 3767 8.917088 TGAATCCTTGATGTTTTCTTTCTTTCT 58.083 29.630 0.00 0.00 0.00 2.52
2576 3768 9.755804 GAATCCTTGATGTTTTCTTTCTTTCTT 57.244 29.630 0.00 0.00 0.00 2.52
2579 3771 9.369904 TCCTTGATGTTTTCTTTCTTTCTTTTG 57.630 29.630 0.00 0.00 0.00 2.44
2580 3772 9.369904 CCTTGATGTTTTCTTTCTTTCTTTTGA 57.630 29.630 0.00 0.00 0.00 2.69
2586 3778 8.495148 TGTTTTCTTTCTTTCTTTTGAAACAGC 58.505 29.630 0.00 0.00 42.84 4.40
2587 3779 7.595311 TTTCTTTCTTTCTTTTGAAACAGCC 57.405 32.000 0.00 0.00 42.84 4.85
2588 3780 6.279513 TCTTTCTTTCTTTTGAAACAGCCA 57.720 33.333 0.00 0.00 42.84 4.75
2589 3781 6.099341 TCTTTCTTTCTTTTGAAACAGCCAC 58.901 36.000 0.00 0.00 42.84 5.01
2590 3782 5.659440 TTCTTTCTTTTGAAACAGCCACT 57.341 34.783 0.00 0.00 42.84 4.00
2591 3783 6.767524 TTCTTTCTTTTGAAACAGCCACTA 57.232 33.333 0.00 0.00 42.84 2.74
2592 3784 6.767524 TCTTTCTTTTGAAACAGCCACTAA 57.232 33.333 0.00 0.00 42.84 2.24
2593 3785 7.346751 TCTTTCTTTTGAAACAGCCACTAAT 57.653 32.000 0.00 0.00 42.84 1.73
2594 3786 8.458573 TCTTTCTTTTGAAACAGCCACTAATA 57.541 30.769 0.00 0.00 42.84 0.98
2595 3787 8.349983 TCTTTCTTTTGAAACAGCCACTAATAC 58.650 33.333 0.00 0.00 42.84 1.89
2596 3788 7.817418 TTCTTTTGAAACAGCCACTAATACT 57.183 32.000 0.00 0.00 35.17 2.12
2597 3789 7.817418 TCTTTTGAAACAGCCACTAATACTT 57.183 32.000 0.00 0.00 0.00 2.24
2598 3790 7.648142 TCTTTTGAAACAGCCACTAATACTTG 58.352 34.615 0.00 0.00 0.00 3.16
2599 3791 7.500892 TCTTTTGAAACAGCCACTAATACTTGA 59.499 33.333 0.00 0.00 0.00 3.02
2600 3792 6.801539 TTGAAACAGCCACTAATACTTGAG 57.198 37.500 0.00 0.00 0.00 3.02
2601 3793 5.865085 TGAAACAGCCACTAATACTTGAGT 58.135 37.500 0.00 0.00 0.00 3.41
2602 3794 5.700832 TGAAACAGCCACTAATACTTGAGTG 59.299 40.000 0.00 0.00 42.29 3.51
2603 3795 4.891992 ACAGCCACTAATACTTGAGTGT 57.108 40.909 1.72 0.00 41.28 3.55
2604 3796 4.569943 ACAGCCACTAATACTTGAGTGTG 58.430 43.478 1.72 0.00 41.28 3.82
2605 3797 4.283467 ACAGCCACTAATACTTGAGTGTGA 59.717 41.667 1.72 0.00 41.28 3.58
2606 3798 5.046304 ACAGCCACTAATACTTGAGTGTGAT 60.046 40.000 1.72 0.00 41.28 3.06
2607 3799 5.521735 CAGCCACTAATACTTGAGTGTGATC 59.478 44.000 1.72 0.00 41.28 2.92
2608 3800 5.423610 AGCCACTAATACTTGAGTGTGATCT 59.576 40.000 0.00 0.00 41.28 2.75
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 2.482333 CGTCGGGTGGTGGCAAAAA 61.482 57.895 0.00 0.00 0.00 1.94
27 28 4.742201 CTCTGGCGTCGGGTGGTG 62.742 72.222 0.00 0.00 0.00 4.17
39 40 4.058655 ACAGATGTTGTTTCCAGCTCTGG 61.059 47.826 9.61 9.61 44.41 3.86
40 41 3.144506 ACAGATGTTGTTTCCAGCTCTG 58.855 45.455 0.00 0.00 36.31 3.35
41 42 3.498774 ACAGATGTTGTTTCCAGCTCT 57.501 42.857 0.00 0.00 36.31 4.09
52 56 3.185594 CCATGCAGCAAAAACAGATGTTG 59.814 43.478 0.00 0.00 38.44 3.33
54 58 2.629137 TCCATGCAGCAAAAACAGATGT 59.371 40.909 0.00 0.00 0.00 3.06
56 60 2.895404 AGTCCATGCAGCAAAAACAGAT 59.105 40.909 0.00 0.00 0.00 2.90
58 62 2.806608 AGTCCATGCAGCAAAAACAG 57.193 45.000 0.00 0.00 0.00 3.16
73 77 3.124560 GGCGCAGAAATTACTCTAGTCC 58.875 50.000 10.83 0.00 0.00 3.85
75 79 2.481449 CCGGCGCAGAAATTACTCTAGT 60.481 50.000 10.83 0.00 0.00 2.57
76 80 2.128035 CCGGCGCAGAAATTACTCTAG 58.872 52.381 10.83 0.00 0.00 2.43
77 81 1.805120 GCCGGCGCAGAAATTACTCTA 60.805 52.381 12.58 0.00 34.03 2.43
108 112 3.804873 TGCCGGTTGAAACAAAATAAAGC 59.195 39.130 1.90 0.00 0.00 3.51
156 160 2.672195 GCAGCTCCCATGTAGCAAAAAC 60.672 50.000 16.91 1.46 42.62 2.43
171 175 2.042404 CTCTCCCCTGGATGCAGCTC 62.042 65.000 9.03 0.00 0.00 4.09
197 201 3.046870 TGCGTCCCCAATGCAAAC 58.953 55.556 0.00 0.00 46.85 2.93
201 205 2.774799 GGTCATGCGTCCCCAATGC 61.775 63.158 0.00 0.00 40.55 3.56
202 206 0.752743 ATGGTCATGCGTCCCCAATG 60.753 55.000 0.00 0.00 0.00 2.82
205 209 2.271821 CATGGTCATGCGTCCCCA 59.728 61.111 0.00 0.00 31.39 4.96
230 236 2.917227 TGTCTCCGGTGCAGCTCA 60.917 61.111 14.92 0.00 0.00 4.26
248 254 3.885521 CGTCGTAGCCCTCCCGTC 61.886 72.222 0.00 0.00 0.00 4.79
260 266 0.874390 TACTTTACACTCGCCGTCGT 59.126 50.000 0.00 0.00 36.96 4.34
265 271 2.739913 TGCAACATACTTTACACTCGCC 59.260 45.455 0.00 0.00 0.00 5.54
281 287 2.348605 TTCGTGGCCTTGCTTGCAAC 62.349 55.000 3.32 0.00 0.00 4.17
282 288 2.124060 TTCGTGGCCTTGCTTGCAA 61.124 52.632 3.32 7.83 0.00 4.08
334 350 1.445582 CCACACTAACCGTCTCGCC 60.446 63.158 0.00 0.00 0.00 5.54
335 351 0.731855 GACCACACTAACCGTCTCGC 60.732 60.000 0.00 0.00 0.00 5.03
336 352 0.453950 CGACCACACTAACCGTCTCG 60.454 60.000 0.00 0.00 0.00 4.04
337 353 0.877071 TCGACCACACTAACCGTCTC 59.123 55.000 0.00 0.00 0.00 3.36
338 354 0.595095 GTCGACCACACTAACCGTCT 59.405 55.000 3.51 0.00 0.00 4.18
339 355 0.727122 CGTCGACCACACTAACCGTC 60.727 60.000 10.58 0.00 0.00 4.79
340 356 1.165907 TCGTCGACCACACTAACCGT 61.166 55.000 10.58 0.00 0.00 4.83
341 357 0.169672 ATCGTCGACCACACTAACCG 59.830 55.000 10.58 0.00 0.00 4.44
342 358 1.625616 CATCGTCGACCACACTAACC 58.374 55.000 10.58 0.00 0.00 2.85
343 359 1.625616 CCATCGTCGACCACACTAAC 58.374 55.000 10.58 0.00 0.00 2.34
344 360 0.108992 GCCATCGTCGACCACACTAA 60.109 55.000 10.58 0.00 0.00 2.24
345 361 1.509463 GCCATCGTCGACCACACTA 59.491 57.895 10.58 0.00 0.00 2.74
346 362 2.261671 GCCATCGTCGACCACACT 59.738 61.111 10.58 0.00 0.00 3.55
347 363 3.179265 CGCCATCGTCGACCACAC 61.179 66.667 10.58 0.00 0.00 3.82
355 371 4.891727 ATCACCGGCGCCATCGTC 62.892 66.667 28.98 0.00 38.14 4.20
359 375 4.802051 AAGCATCACCGGCGCCAT 62.802 61.111 28.98 11.47 36.08 4.40
363 379 3.554692 GTCGAAGCATCACCGGCG 61.555 66.667 0.00 0.00 36.08 6.46
364 380 3.554692 CGTCGAAGCATCACCGGC 61.555 66.667 0.00 0.00 0.00 6.13
365 381 2.158959 GTCGTCGAAGCATCACCGG 61.159 63.158 0.00 0.00 0.00 5.28
366 382 2.497092 CGTCGTCGAAGCATCACCG 61.497 63.158 0.00 0.00 39.71 4.94
367 383 2.158959 CCGTCGTCGAAGCATCACC 61.159 63.158 2.98 0.00 39.71 4.02
368 384 2.789203 GCCGTCGTCGAAGCATCAC 61.789 63.158 12.36 0.00 39.71 3.06
369 385 2.506217 GCCGTCGTCGAAGCATCA 60.506 61.111 12.36 0.00 39.71 3.07
370 386 3.255379 GGCCGTCGTCGAAGCATC 61.255 66.667 17.44 3.63 39.71 3.91
371 387 3.371097 ATGGCCGTCGTCGAAGCAT 62.371 57.895 17.44 7.83 39.71 3.79
372 388 4.063967 ATGGCCGTCGTCGAAGCA 62.064 61.111 17.44 6.02 39.71 3.91
373 389 3.554692 CATGGCCGTCGTCGAAGC 61.555 66.667 2.98 9.47 39.71 3.86
374 390 2.885644 CCATGGCCGTCGTCGAAG 60.886 66.667 0.00 0.00 39.71 3.79
375 391 3.350909 CTCCATGGCCGTCGTCGAA 62.351 63.158 6.96 0.00 39.71 3.71
376 392 3.822192 CTCCATGGCCGTCGTCGA 61.822 66.667 6.96 0.00 39.71 4.20
377 393 3.758088 CTCTCCATGGCCGTCGTCG 62.758 68.421 6.96 0.00 0.00 5.12
378 394 2.105128 CTCTCCATGGCCGTCGTC 59.895 66.667 6.96 0.00 0.00 4.20
379 395 2.362503 TCTCTCCATGGCCGTCGT 60.363 61.111 6.96 0.00 0.00 4.34
380 396 2.105128 GTCTCTCCATGGCCGTCG 59.895 66.667 6.96 0.00 0.00 5.12
381 397 2.105128 CGTCTCTCCATGGCCGTC 59.895 66.667 6.96 0.00 0.00 4.79
382 398 3.461773 CCGTCTCTCCATGGCCGT 61.462 66.667 6.96 0.00 0.00 5.68
383 399 4.899239 GCCGTCTCTCCATGGCCG 62.899 72.222 6.96 0.01 42.03 6.13
384 400 4.899239 CGCCGTCTCTCCATGGCC 62.899 72.222 6.96 0.00 44.66 5.36
385 401 4.148825 ACGCCGTCTCTCCATGGC 62.149 66.667 6.96 0.00 44.12 4.40
386 402 2.202797 CACGCCGTCTCTCCATGG 60.203 66.667 4.97 4.97 0.00 3.66
387 403 2.887568 GCACGCCGTCTCTCCATG 60.888 66.667 0.00 0.00 0.00 3.66
388 404 3.071206 AGCACGCCGTCTCTCCAT 61.071 61.111 0.00 0.00 0.00 3.41
389 405 4.056125 CAGCACGCCGTCTCTCCA 62.056 66.667 0.00 0.00 0.00 3.86
391 407 4.427661 AGCAGCACGCCGTCTCTC 62.428 66.667 0.00 0.00 44.04 3.20
392 408 4.731612 CAGCAGCACGCCGTCTCT 62.732 66.667 0.00 0.00 44.04 3.10
400 416 3.476646 CTCGTCAGCAGCAGCACG 61.477 66.667 3.17 5.71 45.49 5.34
401 417 3.117171 CCTCGTCAGCAGCAGCAC 61.117 66.667 3.17 0.00 45.49 4.40
408 424 2.965783 GAGACTGCCTCGTCAGCA 59.034 61.111 0.00 0.00 37.59 4.41
427 443 0.393132 GCTCTAGACAAACTGCCCCC 60.393 60.000 0.00 0.00 0.00 5.40
428 444 0.324943 TGCTCTAGACAAACTGCCCC 59.675 55.000 0.00 0.00 0.00 5.80
429 445 1.677217 CCTGCTCTAGACAAACTGCCC 60.677 57.143 0.00 0.00 0.00 5.36
430 446 1.002544 ACCTGCTCTAGACAAACTGCC 59.997 52.381 0.00 0.00 0.00 4.85
431 447 2.289072 TGACCTGCTCTAGACAAACTGC 60.289 50.000 0.00 0.00 0.00 4.40
432 448 3.667497 TGACCTGCTCTAGACAAACTG 57.333 47.619 0.00 0.00 0.00 3.16
433 449 3.553096 CGTTGACCTGCTCTAGACAAACT 60.553 47.826 0.00 0.00 0.00 2.66
434 450 2.731976 CGTTGACCTGCTCTAGACAAAC 59.268 50.000 0.00 0.00 0.00 2.93
435 451 2.866460 GCGTTGACCTGCTCTAGACAAA 60.866 50.000 0.00 0.00 0.00 2.83
436 452 1.336887 GCGTTGACCTGCTCTAGACAA 60.337 52.381 0.00 0.00 0.00 3.18
437 453 0.243907 GCGTTGACCTGCTCTAGACA 59.756 55.000 0.00 0.00 0.00 3.41
438 454 0.528470 AGCGTTGACCTGCTCTAGAC 59.472 55.000 0.00 0.00 36.53 2.59
439 455 0.528017 CAGCGTTGACCTGCTCTAGA 59.472 55.000 0.00 0.00 40.03 2.43
440 456 0.528017 TCAGCGTTGACCTGCTCTAG 59.472 55.000 0.00 0.00 40.03 2.43
441 457 1.186200 ATCAGCGTTGACCTGCTCTA 58.814 50.000 3.33 0.00 40.03 2.43
442 458 0.322975 AATCAGCGTTGACCTGCTCT 59.677 50.000 3.33 0.00 40.03 4.09
443 459 1.129437 GAAATCAGCGTTGACCTGCTC 59.871 52.381 3.33 0.00 40.03 4.26
444 460 1.160137 GAAATCAGCGTTGACCTGCT 58.840 50.000 3.33 0.00 43.58 4.24
445 461 0.169009 GGAAATCAGCGTTGACCTGC 59.831 55.000 3.33 0.00 35.83 4.85
446 462 1.522668 TGGAAATCAGCGTTGACCTG 58.477 50.000 3.33 0.00 35.83 4.00
447 463 2.026822 AGATGGAAATCAGCGTTGACCT 60.027 45.455 3.33 0.00 36.78 3.85
448 464 2.352960 GAGATGGAAATCAGCGTTGACC 59.647 50.000 3.33 1.99 36.78 4.02
449 465 3.265791 AGAGATGGAAATCAGCGTTGAC 58.734 45.455 3.33 0.00 36.78 3.18
450 466 3.196469 AGAGAGATGGAAATCAGCGTTGA 59.804 43.478 3.86 3.86 36.78 3.18
451 467 3.309138 CAGAGAGATGGAAATCAGCGTTG 59.691 47.826 0.00 0.00 36.78 4.10
452 468 3.529533 CAGAGAGATGGAAATCAGCGTT 58.470 45.455 0.00 0.00 36.78 4.84
453 469 2.158986 CCAGAGAGATGGAAATCAGCGT 60.159 50.000 0.00 0.00 43.57 5.07
454 470 2.102084 TCCAGAGAGATGGAAATCAGCG 59.898 50.000 0.00 0.00 46.45 5.18
455 471 3.834489 TCCAGAGAGATGGAAATCAGC 57.166 47.619 0.00 0.00 46.45 4.26
463 479 5.779260 TCTTAGATTGGATCCAGAGAGATGG 59.221 44.000 15.53 3.30 42.11 3.51
464 480 6.071221 CCTCTTAGATTGGATCCAGAGAGATG 60.071 46.154 26.15 16.16 38.56 2.90
465 481 6.018469 CCTCTTAGATTGGATCCAGAGAGAT 58.982 44.000 26.15 15.59 38.56 2.75
466 482 5.135191 TCCTCTTAGATTGGATCCAGAGAGA 59.865 44.000 26.15 19.69 38.56 3.10
467 483 5.392995 TCCTCTTAGATTGGATCCAGAGAG 58.607 45.833 21.97 21.88 38.56 3.20
468 484 5.409590 TCCTCTTAGATTGGATCCAGAGA 57.590 43.478 21.97 16.20 38.56 3.10
469 485 6.497954 AGATTCCTCTTAGATTGGATCCAGAG 59.502 42.308 15.53 15.85 37.14 3.35
470 486 6.269538 CAGATTCCTCTTAGATTGGATCCAGA 59.730 42.308 15.53 6.74 0.00 3.86
471 487 6.465948 CAGATTCCTCTTAGATTGGATCCAG 58.534 44.000 15.53 1.98 0.00 3.86
472 488 5.309020 CCAGATTCCTCTTAGATTGGATCCA 59.691 44.000 11.44 11.44 0.00 3.41
473 489 5.280419 CCCAGATTCCTCTTAGATTGGATCC 60.280 48.000 4.20 4.20 0.00 3.36
474 490 5.545723 TCCCAGATTCCTCTTAGATTGGATC 59.454 44.000 0.00 0.00 0.00 3.36
475 491 5.480710 TCCCAGATTCCTCTTAGATTGGAT 58.519 41.667 0.00 0.00 0.00 3.41
476 492 4.895836 TCCCAGATTCCTCTTAGATTGGA 58.104 43.478 0.00 0.00 0.00 3.53
477 493 5.636903 TTCCCAGATTCCTCTTAGATTGG 57.363 43.478 0.00 0.00 0.00 3.16
478 494 6.060788 CCTTTCCCAGATTCCTCTTAGATTG 58.939 44.000 0.00 0.00 0.00 2.67
479 495 5.133491 CCCTTTCCCAGATTCCTCTTAGATT 59.867 44.000 0.00 0.00 0.00 2.40
480 496 4.662650 CCCTTTCCCAGATTCCTCTTAGAT 59.337 45.833 0.00 0.00 0.00 1.98
481 497 4.040755 CCCTTTCCCAGATTCCTCTTAGA 58.959 47.826 0.00 0.00 0.00 2.10
482 498 4.040755 TCCCTTTCCCAGATTCCTCTTAG 58.959 47.826 0.00 0.00 0.00 2.18
483 499 4.088634 TCCCTTTCCCAGATTCCTCTTA 57.911 45.455 0.00 0.00 0.00 2.10
484 500 2.934722 TCCCTTTCCCAGATTCCTCTT 58.065 47.619 0.00 0.00 0.00 2.85
485 501 2.668850 TCCCTTTCCCAGATTCCTCT 57.331 50.000 0.00 0.00 0.00 3.69
486 502 3.739401 TTTCCCTTTCCCAGATTCCTC 57.261 47.619 0.00 0.00 0.00 3.71
487 503 3.662642 TCTTTTCCCTTTCCCAGATTCCT 59.337 43.478 0.00 0.00 0.00 3.36
488 504 4.047627 TCTTTTCCCTTTCCCAGATTCC 57.952 45.455 0.00 0.00 0.00 3.01
489 505 5.126222 GTCATCTTTTCCCTTTCCCAGATTC 59.874 44.000 0.00 0.00 0.00 2.52
490 506 5.019470 GTCATCTTTTCCCTTTCCCAGATT 58.981 41.667 0.00 0.00 0.00 2.40
491 507 4.604156 GTCATCTTTTCCCTTTCCCAGAT 58.396 43.478 0.00 0.00 0.00 2.90
492 508 3.559171 CGTCATCTTTTCCCTTTCCCAGA 60.559 47.826 0.00 0.00 0.00 3.86
493 509 2.749621 CGTCATCTTTTCCCTTTCCCAG 59.250 50.000 0.00 0.00 0.00 4.45
494 510 2.107552 ACGTCATCTTTTCCCTTTCCCA 59.892 45.455 0.00 0.00 0.00 4.37
495 511 2.488153 CACGTCATCTTTTCCCTTTCCC 59.512 50.000 0.00 0.00 0.00 3.97
496 512 2.488153 CCACGTCATCTTTTCCCTTTCC 59.512 50.000 0.00 0.00 0.00 3.13
497 513 2.488153 CCCACGTCATCTTTTCCCTTTC 59.512 50.000 0.00 0.00 0.00 2.62
498 514 2.107552 TCCCACGTCATCTTTTCCCTTT 59.892 45.455 0.00 0.00 0.00 3.11
499 515 1.702957 TCCCACGTCATCTTTTCCCTT 59.297 47.619 0.00 0.00 0.00 3.95
500 516 1.279271 CTCCCACGTCATCTTTTCCCT 59.721 52.381 0.00 0.00 0.00 4.20
501 517 1.003233 ACTCCCACGTCATCTTTTCCC 59.997 52.381 0.00 0.00 0.00 3.97
502 518 2.474410 ACTCCCACGTCATCTTTTCC 57.526 50.000 0.00 0.00 0.00 3.13
503 519 3.665190 AGAACTCCCACGTCATCTTTTC 58.335 45.455 0.00 0.00 0.00 2.29
504 520 3.771577 AGAACTCCCACGTCATCTTTT 57.228 42.857 0.00 0.00 0.00 2.27
505 521 4.884668 TTAGAACTCCCACGTCATCTTT 57.115 40.909 0.00 0.00 0.00 2.52
506 522 4.712337 AGATTAGAACTCCCACGTCATCTT 59.288 41.667 0.00 0.00 0.00 2.40
507 523 4.282496 AGATTAGAACTCCCACGTCATCT 58.718 43.478 0.00 0.00 0.00 2.90
508 524 4.657436 AGATTAGAACTCCCACGTCATC 57.343 45.455 0.00 0.00 0.00 2.92
509 525 5.421056 TGTTAGATTAGAACTCCCACGTCAT 59.579 40.000 0.00 0.00 0.00 3.06
510 526 4.768448 TGTTAGATTAGAACTCCCACGTCA 59.232 41.667 0.00 0.00 0.00 4.35
511 527 5.320549 TGTTAGATTAGAACTCCCACGTC 57.679 43.478 0.00 0.00 0.00 4.34
512 528 4.381718 GCTGTTAGATTAGAACTCCCACGT 60.382 45.833 0.00 0.00 0.00 4.49
513 529 4.113354 GCTGTTAGATTAGAACTCCCACG 58.887 47.826 0.00 0.00 0.00 4.94
514 530 4.081087 TGGCTGTTAGATTAGAACTCCCAC 60.081 45.833 0.00 0.00 0.00 4.61
515 531 4.081087 GTGGCTGTTAGATTAGAACTCCCA 60.081 45.833 0.00 0.00 0.00 4.37
516 532 4.081087 TGTGGCTGTTAGATTAGAACTCCC 60.081 45.833 0.00 0.00 0.00 4.30
517 533 5.086104 TGTGGCTGTTAGATTAGAACTCC 57.914 43.478 0.00 0.00 0.00 3.85
518 534 7.334421 TCATTTGTGGCTGTTAGATTAGAACTC 59.666 37.037 0.00 0.00 0.00 3.01
519 535 7.168219 TCATTTGTGGCTGTTAGATTAGAACT 58.832 34.615 0.00 0.00 0.00 3.01
520 536 7.377766 TCATTTGTGGCTGTTAGATTAGAAC 57.622 36.000 0.00 0.00 0.00 3.01
521 537 7.665559 ACTTCATTTGTGGCTGTTAGATTAGAA 59.334 33.333 0.00 0.00 0.00 2.10
522 538 7.168219 ACTTCATTTGTGGCTGTTAGATTAGA 58.832 34.615 0.00 0.00 0.00 2.10
523 539 7.383102 ACTTCATTTGTGGCTGTTAGATTAG 57.617 36.000 0.00 0.00 0.00 1.73
524 540 8.856153 TTACTTCATTTGTGGCTGTTAGATTA 57.144 30.769 0.00 0.00 0.00 1.75
525 541 7.759489 TTACTTCATTTGTGGCTGTTAGATT 57.241 32.000 0.00 0.00 0.00 2.40
526 542 7.067494 GGATTACTTCATTTGTGGCTGTTAGAT 59.933 37.037 0.00 0.00 0.00 1.98
527 543 6.374333 GGATTACTTCATTTGTGGCTGTTAGA 59.626 38.462 0.00 0.00 0.00 2.10
528 544 6.150976 TGGATTACTTCATTTGTGGCTGTTAG 59.849 38.462 0.00 0.00 0.00 2.34
529 545 6.007076 TGGATTACTTCATTTGTGGCTGTTA 58.993 36.000 0.00 0.00 0.00 2.41
530 546 4.832266 TGGATTACTTCATTTGTGGCTGTT 59.168 37.500 0.00 0.00 0.00 3.16
531 547 4.406456 TGGATTACTTCATTTGTGGCTGT 58.594 39.130 0.00 0.00 0.00 4.40
532 548 4.676196 GCTGGATTACTTCATTTGTGGCTG 60.676 45.833 0.00 0.00 0.00 4.85
533 549 3.445096 GCTGGATTACTTCATTTGTGGCT 59.555 43.478 0.00 0.00 0.00 4.75
534 550 3.731867 CGCTGGATTACTTCATTTGTGGC 60.732 47.826 0.00 0.00 0.00 5.01
535 551 3.181497 CCGCTGGATTACTTCATTTGTGG 60.181 47.826 0.00 0.00 0.00 4.17
536 552 3.731867 GCCGCTGGATTACTTCATTTGTG 60.732 47.826 0.00 0.00 0.00 3.33
537 553 2.423538 GCCGCTGGATTACTTCATTTGT 59.576 45.455 0.00 0.00 0.00 2.83
538 554 2.684881 AGCCGCTGGATTACTTCATTTG 59.315 45.455 0.00 0.00 0.00 2.32
539 555 2.684881 CAGCCGCTGGATTACTTCATTT 59.315 45.455 12.93 0.00 0.00 2.32
540 556 2.292267 CAGCCGCTGGATTACTTCATT 58.708 47.619 12.93 0.00 0.00 2.57
541 557 1.959042 CAGCCGCTGGATTACTTCAT 58.041 50.000 12.93 0.00 0.00 2.57
542 558 3.458872 CAGCCGCTGGATTACTTCA 57.541 52.632 12.93 0.00 0.00 3.02
552 568 3.729965 CTACTCAGGCCAGCCGCTG 62.730 68.421 13.82 13.82 41.95 5.18
553 569 3.465403 CTACTCAGGCCAGCCGCT 61.465 66.667 5.01 0.00 41.95 5.52
554 570 3.724914 GACTACTCAGGCCAGCCGC 62.725 68.421 5.01 0.00 41.95 6.53
555 571 2.496817 GACTACTCAGGCCAGCCG 59.503 66.667 5.01 0.00 41.95 5.52
556 572 2.496817 CGACTACTCAGGCCAGCC 59.503 66.667 5.01 0.00 0.00 4.85
557 573 2.202810 GCGACTACTCAGGCCAGC 60.203 66.667 5.01 0.00 0.00 4.85
558 574 2.496817 GGCGACTACTCAGGCCAG 59.503 66.667 5.01 0.00 44.91 4.85
560 576 1.153549 CAAGGCGACTACTCAGGCC 60.154 63.158 0.00 0.00 42.68 5.19
561 577 0.037232 AACAAGGCGACTACTCAGGC 60.037 55.000 0.00 0.00 42.68 4.85
562 578 1.000955 ACAACAAGGCGACTACTCAGG 59.999 52.381 0.00 0.00 42.68 3.86
563 579 2.440539 ACAACAAGGCGACTACTCAG 57.559 50.000 0.00 0.00 42.68 3.35
564 580 2.902705 AACAACAAGGCGACTACTCA 57.097 45.000 0.00 0.00 42.68 3.41
565 581 4.150098 CACTTAACAACAAGGCGACTACTC 59.850 45.833 0.00 0.00 42.68 2.59
566 582 4.056050 CACTTAACAACAAGGCGACTACT 58.944 43.478 0.00 0.00 42.68 2.57
567 583 3.805971 ACACTTAACAACAAGGCGACTAC 59.194 43.478 0.00 0.00 42.68 2.73
568 584 4.062677 ACACTTAACAACAAGGCGACTA 57.937 40.909 0.00 0.00 42.68 2.59
570 586 4.799419 TTACACTTAACAACAAGGCGAC 57.201 40.909 0.00 0.00 0.00 5.19
571 587 7.493743 TTATTTACACTTAACAACAAGGCGA 57.506 32.000 0.00 0.00 0.00 5.54
572 588 7.113825 GGTTTATTTACACTTAACAACAAGGCG 59.886 37.037 0.00 0.00 0.00 5.52
573 589 8.139350 AGGTTTATTTACACTTAACAACAAGGC 58.861 33.333 0.00 0.00 0.00 4.35
576 592 9.719279 CGAAGGTTTATTTACACTTAACAACAA 57.281 29.630 0.00 0.00 0.00 2.83
618 634 7.769272 TCTTTTTGACAATGATGGTTGTTTC 57.231 32.000 0.00 0.00 42.08 2.78
646 1787 8.230486 TGCGATCTCAAGAGTTTTATTTTTCTC 58.770 33.333 0.00 0.00 0.00 2.87
696 1839 4.023707 CCTGTTCGATGCCTAATTTGATCC 60.024 45.833 0.00 0.00 0.00 3.36
712 1855 0.248458 GTTTGCACACCACCTGTTCG 60.248 55.000 0.00 0.00 0.00 3.95
761 1923 2.709475 GGCTATTTCTGGCGTGCG 59.291 61.111 0.00 0.00 0.00 5.34
899 2069 3.225104 GGGACGTGGGTGAGTATATACA 58.775 50.000 15.18 0.00 0.00 2.29
1056 2226 3.141488 GCGGAGGCGAGGAAGAGA 61.141 66.667 0.00 0.00 0.00 3.10
1287 2463 1.302511 CGGGTTGTCCTTGACCAGG 60.303 63.158 0.00 0.00 45.64 4.45
1440 2616 2.711922 GGTCTCGTCGCAGGACCAT 61.712 63.158 19.48 0.00 46.14 3.55
1515 2691 3.152261 ACGTTCATCATCCTCTCGAAC 57.848 47.619 0.00 0.00 34.10 3.95
1614 2790 7.601130 GGTATATCGGTAGTGTGAATTATGCAA 59.399 37.037 0.00 0.00 0.00 4.08
1658 2834 5.352293 TCGTAGTGGGTGCGTACATATATAG 59.648 44.000 5.86 0.00 35.46 1.31
1679 2856 4.256920 ACGGAGTAGTATGTAACACTCGT 58.743 43.478 0.00 0.00 41.94 4.18
1768 2950 5.715070 TCGCCAACCAGTTTAATTTATTGG 58.285 37.500 0.00 0.00 38.51 3.16
1864 3046 9.313118 ACTTTCCAACAAAATTGAAAGTACATC 57.687 29.630 14.36 0.00 39.93 3.06
1865 3047 9.313118 GACTTTCCAACAAAATTGAAAGTACAT 57.687 29.630 15.41 0.00 41.21 2.29
1870 3052 8.720562 AGTTTGACTTTCCAACAAAATTGAAAG 58.279 29.630 10.53 10.53 35.74 2.62
1874 3056 9.676195 AAAAAGTTTGACTTTCCAACAAAATTG 57.324 25.926 6.53 0.00 46.78 2.32
1989 3171 8.650143 ATGTTTGTGAAACCAAATAGGAGTAT 57.350 30.769 0.00 0.00 40.67 2.12
2013 3195 8.966868 ACCGAGTTTGTCCAAAAATATATCAAT 58.033 29.630 0.00 0.00 31.33 2.57
2027 3209 4.927422 TCAAAATTTGACCGAGTTTGTCC 58.073 39.130 4.03 0.00 34.08 4.02
2028 3210 5.816919 TCTCAAAATTTGACCGAGTTTGTC 58.183 37.500 4.03 0.00 35.46 3.18
2044 3226 8.243961 TGTTGGAAGGTCAAATTATCTCAAAA 57.756 30.769 0.00 0.00 0.00 2.44
2048 3230 7.886338 ACTTTGTTGGAAGGTCAAATTATCTC 58.114 34.615 0.00 0.00 32.04 2.75
2050 3232 7.384932 CCAACTTTGTTGGAAGGTCAAATTATC 59.615 37.037 21.06 0.00 42.06 1.75
2076 3258 5.365619 TCTGTCTTTCAAAGGGTGTACTTC 58.634 41.667 0.00 0.00 0.00 3.01
2085 3267 3.778954 ACTCCCTCTGTCTTTCAAAGG 57.221 47.619 0.00 0.00 34.23 3.11
2093 3275 5.721960 ACAATGTTATGTACTCCCTCTGTCT 59.278 40.000 0.00 0.00 0.00 3.41
2096 3278 7.327975 TGTAACAATGTTATGTACTCCCTCTG 58.672 38.462 9.22 0.00 32.02 3.35
2097 3279 7.490657 TGTAACAATGTTATGTACTCCCTCT 57.509 36.000 9.22 0.00 32.02 3.69
2138 3320 0.887933 AATGTGAACGATGTTGGCCC 59.112 50.000 0.00 0.00 0.00 5.80
2151 3333 6.260050 GTCCTTCCGCAGAATATTAAATGTGA 59.740 38.462 8.97 0.30 0.00 3.58
2165 3348 1.021390 GTGGTCATGTCCTTCCGCAG 61.021 60.000 10.43 0.00 0.00 5.18
2166 3349 1.003839 GTGGTCATGTCCTTCCGCA 60.004 57.895 10.43 0.00 0.00 5.69
2167 3350 1.745489 GGTGGTCATGTCCTTCCGC 60.745 63.158 10.43 4.99 0.00 5.54
2168 3351 0.673644 GTGGTGGTCATGTCCTTCCG 60.674 60.000 10.43 0.00 0.00 4.30
2169 3352 0.693049 AGTGGTGGTCATGTCCTTCC 59.307 55.000 10.43 12.20 0.00 3.46
2217 3408 5.500234 TCCTATGCTACAATCAAACAAGCT 58.500 37.500 0.00 0.00 34.28 3.74
2350 3542 3.611025 TTTTTGGTTGTCTCTCCCCAT 57.389 42.857 0.00 0.00 0.00 4.00
2408 3600 6.536582 ACACGAACCATTAGAATTCTCATGAG 59.463 38.462 24.85 17.07 31.06 2.90
2409 3601 6.406370 ACACGAACCATTAGAATTCTCATGA 58.594 36.000 24.85 7.09 31.06 3.07
2430 3622 5.881637 ATTTGTTGTCGTGCAAATAACAC 57.118 34.783 10.84 0.00 41.70 3.32
2432 3624 7.075741 AGAGTATTTGTTGTCGTGCAAATAAC 58.924 34.615 10.15 0.00 44.21 1.89
2481 3673 1.416772 TCCGGTGGACACAACATTGTA 59.583 47.619 0.00 0.00 39.91 2.41
2493 3685 2.257391 TCCTTTAGGATTCCGGTGGA 57.743 50.000 0.00 1.79 39.78 4.02
2518 3710 7.526608 TGTGAAAAATAATCACTTCCGCTAAG 58.473 34.615 8.01 0.00 45.81 2.18
2519 3711 7.389330 TCTGTGAAAAATAATCACTTCCGCTAA 59.611 33.333 8.01 0.00 45.81 3.09
2520 3712 6.876789 TCTGTGAAAAATAATCACTTCCGCTA 59.123 34.615 8.01 0.00 45.81 4.26
2521 3713 5.705441 TCTGTGAAAAATAATCACTTCCGCT 59.295 36.000 8.01 0.00 45.81 5.52
2522 3714 5.938322 TCTGTGAAAAATAATCACTTCCGC 58.062 37.500 8.01 0.00 45.81 5.54
2523 3715 7.359595 TGTTCTGTGAAAAATAATCACTTCCG 58.640 34.615 8.01 0.00 45.81 4.30
2524 3716 9.132521 CATGTTCTGTGAAAAATAATCACTTCC 57.867 33.333 8.01 0.00 45.81 3.46
2525 3717 9.897744 TCATGTTCTGTGAAAAATAATCACTTC 57.102 29.630 8.01 0.00 45.81 3.01
2529 3721 9.859427 GGATTCATGTTCTGTGAAAAATAATCA 57.141 29.630 0.00 0.00 38.89 2.57
2532 3724 9.695526 CAAGGATTCATGTTCTGTGAAAAATAA 57.304 29.630 0.00 0.00 38.89 1.40
2533 3725 9.076781 TCAAGGATTCATGTTCTGTGAAAAATA 57.923 29.630 0.00 0.00 38.89 1.40
2534 3726 7.954835 TCAAGGATTCATGTTCTGTGAAAAAT 58.045 30.769 0.00 0.00 38.89 1.82
2535 3727 7.345422 TCAAGGATTCATGTTCTGTGAAAAA 57.655 32.000 0.00 0.00 38.89 1.94
2536 3728 6.957920 TCAAGGATTCATGTTCTGTGAAAA 57.042 33.333 0.00 0.00 38.89 2.29
2537 3729 6.491062 ACATCAAGGATTCATGTTCTGTGAAA 59.509 34.615 0.00 0.00 35.84 2.69
2538 3730 6.005823 ACATCAAGGATTCATGTTCTGTGAA 58.994 36.000 0.00 0.00 35.84 3.18
2539 3731 5.563592 ACATCAAGGATTCATGTTCTGTGA 58.436 37.500 0.00 0.85 35.84 3.58
2540 3732 5.892160 ACATCAAGGATTCATGTTCTGTG 57.108 39.130 0.00 0.00 35.84 3.66
2546 3738 8.186709 AGAAAGAAAACATCAAGGATTCATGT 57.813 30.769 0.00 0.00 43.48 3.21
2547 3739 9.485206 AAAGAAAGAAAACATCAAGGATTCATG 57.515 29.630 0.00 0.00 30.55 3.07
2548 3740 9.702494 GAAAGAAAGAAAACATCAAGGATTCAT 57.298 29.630 0.00 0.00 0.00 2.57
2549 3741 8.917088 AGAAAGAAAGAAAACATCAAGGATTCA 58.083 29.630 0.00 0.00 0.00 2.57
2550 3742 9.755804 AAGAAAGAAAGAAAACATCAAGGATTC 57.244 29.630 0.00 0.00 0.00 2.52
2553 3745 9.369904 CAAAAGAAAGAAAGAAAACATCAAGGA 57.630 29.630 0.00 0.00 0.00 3.36
2554 3746 9.369904 TCAAAAGAAAGAAAGAAAACATCAAGG 57.630 29.630 0.00 0.00 0.00 3.61
2560 3752 8.495148 GCTGTTTCAAAAGAAAGAAAGAAAACA 58.505 29.630 0.00 0.00 34.69 2.83
2561 3753 7.957484 GGCTGTTTCAAAAGAAAGAAAGAAAAC 59.043 33.333 0.00 0.00 34.69 2.43
2562 3754 7.659390 TGGCTGTTTCAAAAGAAAGAAAGAAAA 59.341 29.630 0.00 0.00 34.69 2.29
2563 3755 7.117667 GTGGCTGTTTCAAAAGAAAGAAAGAAA 59.882 33.333 0.00 0.00 34.69 2.52
2564 3756 6.589907 GTGGCTGTTTCAAAAGAAAGAAAGAA 59.410 34.615 0.00 0.00 34.69 2.52
2565 3757 6.071391 AGTGGCTGTTTCAAAAGAAAGAAAGA 60.071 34.615 0.00 0.00 34.69 2.52
2566 3758 6.101997 AGTGGCTGTTTCAAAAGAAAGAAAG 58.898 36.000 0.00 0.00 34.69 2.62
2567 3759 6.036577 AGTGGCTGTTTCAAAAGAAAGAAA 57.963 33.333 0.00 0.00 0.00 2.52
2568 3760 5.659440 AGTGGCTGTTTCAAAAGAAAGAA 57.341 34.783 0.00 0.00 0.00 2.52
2569 3761 6.767524 TTAGTGGCTGTTTCAAAAGAAAGA 57.232 33.333 0.00 0.00 0.00 2.52
2570 3762 8.352942 AGTATTAGTGGCTGTTTCAAAAGAAAG 58.647 33.333 0.00 0.00 0.00 2.62
2571 3763 8.232913 AGTATTAGTGGCTGTTTCAAAAGAAA 57.767 30.769 0.00 0.00 0.00 2.52
2572 3764 7.817418 AGTATTAGTGGCTGTTTCAAAAGAA 57.183 32.000 0.00 0.00 0.00 2.52
2573 3765 7.500892 TCAAGTATTAGTGGCTGTTTCAAAAGA 59.499 33.333 0.00 0.00 0.00 2.52
2574 3766 7.648142 TCAAGTATTAGTGGCTGTTTCAAAAG 58.352 34.615 0.00 0.00 0.00 2.27
2575 3767 7.284489 ACTCAAGTATTAGTGGCTGTTTCAAAA 59.716 33.333 0.00 0.00 0.00 2.44
2576 3768 6.770785 ACTCAAGTATTAGTGGCTGTTTCAAA 59.229 34.615 0.00 0.00 0.00 2.69
2577 3769 6.204688 CACTCAAGTATTAGTGGCTGTTTCAA 59.795 38.462 0.00 0.00 39.55 2.69
2578 3770 5.700832 CACTCAAGTATTAGTGGCTGTTTCA 59.299 40.000 0.00 0.00 39.55 2.69
2579 3771 5.701290 ACACTCAAGTATTAGTGGCTGTTTC 59.299 40.000 7.33 0.00 45.94 2.78
2580 3772 5.470098 CACACTCAAGTATTAGTGGCTGTTT 59.530 40.000 7.33 0.00 45.94 2.83
2581 3773 4.997395 CACACTCAAGTATTAGTGGCTGTT 59.003 41.667 7.33 0.00 45.94 3.16
2582 3774 4.283467 TCACACTCAAGTATTAGTGGCTGT 59.717 41.667 7.33 0.00 45.94 4.40
2583 3775 4.820897 TCACACTCAAGTATTAGTGGCTG 58.179 43.478 7.33 0.00 45.94 4.85
2584 3776 5.423610 AGATCACACTCAAGTATTAGTGGCT 59.576 40.000 7.33 0.00 45.94 4.75
2585 3777 5.665459 AGATCACACTCAAGTATTAGTGGC 58.335 41.667 7.33 0.00 45.94 5.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.