>input_sequence_74282
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---------ATGGCCACGCGCCGCAGCAGCACGGGCGGCTCCCACGTCTCCTCCCTCCTCGTCCTTCTCTTCCTCGCCTC
CGCCTCGT------CCTTCCTCCTCGGCGCCCGCGCCAAAGGCCCCGTCGTGGACGTCAAGGCGTCCTGCGCCAAGACGG
ACGGCCCGATCACCTGCAACTCCTTCCTCGGGCCCGAGCCGGACACCAAGACGGCGGACGCGCGCGGGCTGGCGGAGATC
GCCATGAGGGTCACCGCCAAGCTCGGCGGCTTGGTGGGGGCCTACGCGCGCCGCGAGCTGGACCTGGTCAAGGACAACCC
GACGTGGCAGTGCCTGGACGAGTGCGCCGAGGACATCGAGGACGCGCTGTCGCACCTGGACGACGCCCTGGGCGGCGTCA
ACGACGCCCAGTTCGACCAGGTCCGCCAGTACATCGACCTCTCCGAGCAGGACACATGGTCCTGCGACGAGACCTGCCGG
GAGACGCCGCCCAGCCCGGTCAAGACCGAGCTGCTCCGCAAGAACCTCGAGTTCGAGAGGATGATGAACGTTACCCGCCA
GCTCATCAAGCTCGCCGACGGGGGCGCCTCGCCGGTGCCGCCGAAACCCGCTATTCTGCCATGA----------------
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>chr5D_1_TraesCS5D01G508000
CTACAACCAACAGAGCATTTTTTTTGCCACCACCCGACGCCA---GAGCTGGAAACAACATCTGTTTTTGCTGCATGGAC
TAGAGTAATTTCTGCGCCGGCAACGCCGGAGGCTTTATTTTGTTTCAACCGGCAACCGGAAAAGCTTCCATCGACATGTG
TTTTTGCTACATGGGAGCTGCATCCAGGGGAGAGGTGGAGGTTTGCATTG-GGGACGCA-TGACCATGCTGCCGGTGAGC
TGCACCGGAGACAGACGGGAGGGCTACGACGGCGAGTGTAAAGTATGTTGCAAGCAA----------GGCCACGAACGGC
GTGGTTTGATGCGTAGATCACGAACGGATGGCGAGACGGTTAGTGTGGTCGACGATGGCGCCGGTGATGCTTCGACGACG
GCCATGGAGAGACGGCGTGCTGCTGCTGACGAGGCAGTCTCGGGGGGCAGTTTGTCTAGAGCAGGTCAACGCTGATTTCC
ATCTCTCTGGATCCAATCTAAGAGGAATCTGGGAAAGGGAAAAGATGACGTGGGAGTTCTAATCTAACAGCCACAAATGA
AGTAATCCAGCGGCTGGCCTGAGTAGTCGCCTTGTTGTTAAGTGTAAATAAACCTTCGTTTGTACTCCTAGTGGAAACAA
CCATCATTGTCA--------------------------------------------------------------------
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-----------------AAAAGAAAAGAGAAAAATAAAACTCTTGAGATCG--CATACACACCTAGCCCTCGATGTCAGG
ATCAAATTAGGCATCGAACA-------------------GGTGGTGTGCAAACATGATGGTGTTCGCGTATGTTTGCGCG
GGCGCACGCCAGAAATAGCCGCTTTCAAACGAGCGGCATGTATAGAGCAGCGACCCACGACACACTCCCGACCACACGCC
CTGAACGGCCGCGCGCATCCATGCATGCATGCAGCCAGCCAGCCTCTGG--------TCGCGCGCGCGTGTATATACTCA
CCCACGTCCCACTCGCATTCTCGTGATCGATCGATCGATCGGAGACCGCCTCCCGGCCGGCCGGAGTGGATCGTACTCAT
ACGTCGACCATGGCCACGCGCCGCAGCAGCACGGGCGGCTCCCACGTCTCCTCCCTCCTCGTCCTTCTCTTCCTCGCCTC
CGCCTCGT------CCTTCCTCCTCGGCGCCCGCGCCAAAGGCCCCGTCGTGGACGTCAAGGCGTCCTGCGCCAAGACGG
ACGGCCCGATCACCTGCAACTCCTTCCTCGGGCCCGAGCCGGACACCAAGACGGCGGACGCGCGCGGGCTGGCGGAGATC
GCCATGAGGGTCACCGCCAAGCTCGGCGGCTTGGTGGGGGCCTACGCGCGCCGCGAGCTGGACCTGGTCAAGGACAACCC
GACGTGGCAGTGCCTGGACGAGTGCGCCGAGGACATCGAGGACGCGCTGTCGCACCTGGACGACGCCCTGGGCGGCGTCA
ACGACGCCCAGTTCGACCAGGTCCGCCAGTACATCGACCTCTCCGAGCAGGACACATGGTCCTGCGACGAGACCTGCCGG
GAGACGCCGCCCAGCCCGGTCAAGACCGAGCTGCTCCGCAAGAACCTCGAGTTCGAGAGGATGATGAACGTTACCCGCCA
GCTCATCAAGCTCGCCGACGGGGGCGCCTCGCCGGTGCCGCCGAAACCCGCTATTCTGCCATGAGCTAGTTGCATAATTC
ACACTACCGATATACCATTCATGATGAGCATATCTA-TATATGTACGCACCCACTACGAGTGTTACATACTACTCCGTCT
TAGCTATATATAGGTTGTA-----ATAATTGTACGTAGTACTTGTTTTATTCTGCAAAAATGTCTCTTACCAATAAATTA
AACTGGTTGGCGAATAGCTTATCTCTGTCTTTCTTGACGTGTTTCGAATAACAAAGCTTTTGTGTATTCCCTTCGTCCTT
AAAAGGATGTACTTTCAATTTTGTTGGAAAGTCAAACTTTTTTATGTTTGACTGTATTTATATAATAGTACATCAATATT
TATGTCATCAAATGAGTAGCATTAGATTCATAATAAAATATATTTTCATCATACTCCTATTTGGTTTCACAAACATTGAT
ATATTTTTGGACAAACTCGGTCAAATTTTGAGATAATTTGACCTTCCAACAAAGTTGGAAGTACACCCTTTGAAAGACAG
AGGGAGTACATAACATTGTTACAAAAGAATTCACTTACTGGGCCAACATCGTTCACATTT-AATATTCTGCG-GAAGG--
-----ACATGACCACCACTAAATTCAACAAGAATAAATTTGCACCAAAGCTTGTTTGATTGTAGCATAGGAAAAAACAAA
-AAACTTTGGTTTGATTGAATCAATTTTTTTTCTTGGTGGAAAGGAATTCTTGGGGAAACAAGTTTAAGGAATATAATCC
TGCAAGTTAAACAATCTTTACATGGGGAGAGACAACCAAAAATTAGTAAGAAAGCTAAAGAACTAATACATATAGAAAAC
TCATGAGAATTCTAATGGTTCGTGTTATTTGCACGACAACAAATACTCTAAAATAGGAAAAAACAATAAGATTACAATGT
TGTGTCCACCGGAATCCTAAAGGATTGAACTTAGCGGAAGTGATTATTTTTCACAGAACATGAATCCTTGATGTTTTCTT
TCTTTCTTTTGAAACAGCCACTAATACTTGAGTGTGATCT
>chr6B_22
---------------------TTTTGCTACAACCCGTGAAGCCTTGAGCTGGAAATAGCGTATGTTTTTGCTGCATCG--
-AGAGTAATTTATGCGGTGGCAACGCCGGAGCCTTTATTTTGTTTCAACCGGCAACCGGAAAAGCTTCCATCGACATGTT
TTTTTGCTACATGGAAGCTGCATCCAGGGGAGAGGTGGAGCTTGCAATGGAGGGACGCATTGACCGTGCCGCTGGCGAGC
TGCACCGGAGACATACAGGAGGGCTGCGACAGCGAGTGTAAAGTATACTGCAACCGACTACGGCAAGGGCCACGAACGGC
GTGATTTGATGTGTAGATCACGAACGGAT---------------------------------------------------
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----------------------------------------------------------GGCGAGACGGTGAGTGTGGTCG
ATGACGGCGA----------------------------------------------------------------------
----------------CGGTCGAGAA------------------------------------------------------
-------------GGCGCCGGGGATGCTTCGACGGCCATGGGGAGACGGTGTGTCGCTGCAGACGAGGCACGGCCCTGCG
GGGGGCA-------------------------------------------------------------------------
-------------------------------------------------------------GTTTCTCTACAGCAGGTCA
AAGTTGTTTTCCATCTCTCGATCAGATCTGAGACGAAGCCAGGGAT----------------------------------
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--------------------------------------------------------------------------GGAAAA
GATTGGGGGTTCTAATCTAACCGTCACAAATGAAGTAATCCAGCGGCTGGCATG--------------------------
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>chr4A_578
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--------------------------------TGTTGTTAAGTGTAAATAAACCTTCGTTTGTACTGCCGGTGAAAACAA
CCATCATTTTAAAATAAAAAAGTTCATTTTACTACCTCGAATAAAGTGGATGGTTCACTTTATCCCCGATCTATTTTTTG
GCTCTTTCTACCCCAAACAAATCAAAATAGGACAAAACACCCCCTAACTGGTTTGTCTCCACTCGCTGCTGATGTGGCAT
TAGTCAACGGTGGTTTTGACCTCGGTGGGCCCCCCTTGTTAGGTCGGGCGTGGGCATCTCCGTTGCTCCCTCGCGCTTCG
TTCCGGCTCCAACGCGACCCCGCCGACGAGCCGCGTCGCCACCTGCTCCACCCCGCGCTAGCCCACCTCCTCCCGTGGCT
ACGCCGCCCCGCCGTTCGCCATGGCGCTCTCAGTGAGCACCCCACTCGGCCTCGCCTCCCTCCTCCGCCGCATTGGCTCC
GGCGCCGTCCGCCCCGTCACCGCTCTGGCCGCACGACTGCGCCACCCCGCCTCCTCCCCGAGCTTGCGTTCTGGACCCCA
GCCGCCCTCGCGCGCTGCTCGCGTCGTCGTCCCCAGCCGCCCGCAGGCTCCGACCGCCCCCGCTCTGCCCTCGCGCGCGC
GGTCCTATTCGCACCCAAGCCGGTCCGCGCCGCTCTACCCTCGTGCGCGTGAACCCAACGCTGAGCCTGGCCGCGCCCAT
CCTCCCCCGCTCGACACACACCGGCTCCGCTCGCCGGCTCCGACCACGCATGCTCTGCCCTCGCGGGCGCAGCCCAGTCC
GCGCCCAAGCCGGTCCGTGCCGCTCTGCCCTCGTGCGCGCGAACCCGTCGCTGTGCCTGGTCGCACTCGGCCTCCCGCAC
TCGGCCCGCGCCGACTCCGCCCGCCACGGCCGCCTGCCGGCTCCGCGCGCACCGGCTACCGCCGCTGTGGCCGGCTGCTA
CTGCAGTAGGGGGCACCCCTTTTTTTCTTTTTTCTATTTCTTTGTTTTTTTACAAAAACTGATGAGTGGGACCCACCGGC
AGGTCAAATACCACCTTTGACTGTGTCCACGTCATCATCTGGTCTGGGTAAACCACCTAGGGTGCTTTTTTGTCCGGTAT
GAGATTGTTTAGGGTGGTATAAGAGCTGAAAAATAAACCAGGGAGTAAAGTGAACCACCCACTTTATTCAGGTAGTAAAA
TGGACTTTTTTTCTTTTAAAAAGACAAAGAAAAACAAAACTCTTGAAATCG--CATACACACCTAGCCCTCGATGTCACG
ATCAAATTAGGCATGGAACATAGTGCATGCGGCATCTTGGGTGGTGTGCAAACATGATGGTGTTCG--------------
GGTGCACGCCAGAAATAGCCGCTTTCAAACGAGCGGCATGCATAGAGCAGTGACCCACGACACACTCCCGACCACACTCG
CTGAACGGCCGCGCGCATCCATGCATGCATGCAGTCAGCCAGCCAGCCTCTGGTCGCTCGCGCGCGCGCGTATATACTCA
CCCACGCCCCACTCGCATTCTCGTGATCGATCGATCGATA-GAGACCGCCTCCCGGCCGGCCGGAGTGGATCGTGCTCAT
ACGTCGACCATGGCCACGCGCCGCAGCAGCACGGGCGGCTGCCACGTCTCCTCCCTCCTCGTCCTCCTCTTCCTCGCCTC
CGCCTCG------GCGTCCCTCCTCGGCGCCCGCGCCAAAGGCCCCGTCGTGGACGTCAAGGCGTCCTGCGCCAAGACGG
ACGGCCCGATCACCTGCAACTCCTTCCTCGGGCCCGAGCCGGACACCAAGACGGCGGACGCGCGCGGGCTGGCGGAGATC
GCCATGAAGGTCACCGCCAAGCTCGGCGGCTTGGTGGGGGCCTACGCGCGCCGCGAGCTGGATCTGGTCAAGGACAACCC
GACGTGGCAGTGCCTGGACGAGTGCGCCGAGGACATCGAGGACGCGCTGTCGCACCTGGACGACGCCCTGGGCGGCGTCA
ACGACGCCCAGTTCGACCAGGTCCGCCAGTACATCGACCTCTCCGAGCAGGACACCTGGTCCTGCGACGAGACCTGCCGG
GACACGCCGCCCAGCCCGGTCAAGACCGAGCTGCTCCGCAAGAACCTCGACTTCGACAGGATGATGAACGTTACCCGCCA
GCTCATCAAGCTCGCCGACGGGGGCGCCTCGCCGGTGCCGCCGAAACCCGCTATTCTTCCATG----AGATGCATAATTC
GCACTAGCGATATACCATTCCTGATGTGCTTTTATATTATATGTACGCACCCACA---AGTGTTACATACTACTCCGTCT
TAGCTATATATAGGTTGTC-----ATAATTGTACGTAGTACTTGTTTTATTCTGCAAAAATGTCTCTTATCAATAAATTA
AACTTGTTTTACATACTA----CTCTGTCTTTCTTGACGTGTTTCGAATAACAAAGCTTTTGTGTATTCCCTCCGTCCTT
AAAAGAGTGTATTTTTAACTTTGCTAAAAAGTCAAATTTTTTTATGTTTGACTGTATTTATACAAGAGTATAGCAACATT
TATGCCATCAAATTAATAGCATTAGATTCATGATAAAATATATTTTCATC-TACTCCAATTTGGTTTCACAAACGTTGAT
ATATTTTTACACAAACTCGGTCAAACTTTAAAATAATTTGACCTTCCAACAAAGTTGAAAGTACACTCTTTGAAGGAAGG
AGAGAGTACATAATATTGTTACAAAATAATTCACTTACTAGGCCAACATCGTCCACATTTTAATATTTCCGCAGAAGG--
-----ACATGACCACCACTAAATTCAACAAGAATAAATTTGCACCAATGCTTGTTTGATTGTAGGAAAGGAAAAACAAAA
AAAACATTTGTTTGACTGAATCAAATTTTTTTCTTGGTGGAAAGGAATTCTTGGGGGAACAAGTTGAAGGAAGATAATCC
TGCAAGTTAAACAATCTTTACGTGGGGAGAGACAACCAAAAGTTAGTAAGAAAGCTAAACAACTAATACATATAGAAAAA
CCATGAGAATTCTAATGGCTCATTTTATTTGCGCGACAACAAATACTCTAAAATAGGAAAAAACAATAAGATAACAATGT
TGTGCTCACCGGAATCCTAAAGGATTGAA---------------------------------------------------
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>chr5B_578
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--------------------------------TGTTGTTAAGTGTAAATAAACCTTCGTCTGTACTCCTAGTGAAAACAA
CCATCATTGTCA--------------------------------------------------------------------
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-----------------AAAATGATAAAGAAAAATAAAACTCTTGAGATCGCACATACACACCTAGCCCTCGATGTCACG
ATCAAATTAGGCGTGGAACATAGTGCATGCGGTATCTTGGGTG-TGTGTAAACATGATAGTGTACACGTATGTTTGCGCA
GGTGCACGCCAGAAATAGCCGCTTTCAAACGAGCGGCATGTATAGAGCAGCGACCCACGACACACTCCCGACCACACACG
CCCTGAACGAGCGGCATGTATAGA--GCATGCAGCCAGCCAGCCTCTGG--------TCGCGCGCGCGCGTATATACTCA
CCCACGTCCGACTCCCATTCTCGTGATCGATCGATCGATCGGAGACCACCTCCCGGCCGGCTGGAGTGGATCGTACTCGT
ACGTCGACCATGGCCACGCGCCGCAGCAGCACGAGCGGCTCCCACGTCTTCTCCCTCCTCGTCCTCCTCTTCCTCGCCTC
CGCCTCCCCCTCCGCCTCCCAACTCGGTGTCCGCCCCAAAGGCCCCGTCGTGGACCTCAAGGCGTCCTGCGCCAAGACGG
ATGGCCCGATCACCTGCAACTCCTTCCTCGGGCCCGAGCCGGACAGCAAGACGGCGGACGCGCGCGGGCTGGCGGAGATC
TCCATGAGGGTCACCGCCAAGCTCGGCGGCTTGGTGGGGGCCTACGCGCGCCGCGAGCTGGATCTGGTCAACGACAACCC
GACGTGGCAGTGCCTGGACGAGTGCGCCGAGGACATCGAGGACGCGCTGTCGCACCTGGACGACGCCCTGGGCGGCGTCA
ACGACGCCCAGTTCGACCAGGTCCGCCAGTACATCGACCTCTCCGAGCAGGACACCTGGTCCTGCGACGAGACCTGCCGG
GACACGCCGCCCAGCCCGGTCAGGACCGAGCTGCTCCGCAAGAACCTCGAATTCGAGAGGATGATGAACGTTACCCGCCA
GCTCATCAAGCTCGCCGACGGGGGCGCCTCGCCGGTGCTGCCGAAACCCGCTATTCTGCCATGAGCTAGATGCATAATTC
ACACTACCGATACACCATTCATGATGAGCATA--TA-TATATGTACGCACTCACTTCGAGTGTTACATA----------T
TAGCTATATATACATATAGCTAATATAATTGTACGTAGTACTTGTTTTATTCTGCAAAAATGTCTCTTATCAATAAATTA
AACTGGTTGGCGAATAGCTTATCTCGGTCTTTCTTGACGTGTGTTTC---------------------------------
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---GAGTACATAATATTGTTACAAGAGAATTCACTTACTCGCCCAACATCGTCTGTATTT-AATATTTCCGCAGAAGGAC
ATGTCACATGACCAACACTAAATTCAACAAGAATAAATTTGCACCAATGCTTGTTTGATTGTAGCATGGACAAAACAAAA
AAAACTTTTGTTT-------------------------------------------------------------------
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>SNPs
SSSSSSSSSSSSSSSSSSSSS------S--S-----SSSSSS-------------S-S-S-S--------------S-SS
S----------S----SS-------------S-----------------------------------------------S
--------------S-------------------------S--SSS--S----------------S---S--S--S----
-------------S--S--------S----S---------------SS-----S-S------------------------
---S-------S-----------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----------------------------------------S------
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---------------------SS-S-S---------------------------------------------------S-
--------------S----------------------------------------------------------------S
--S--------------------------------------------------------------------------S-S
--------------------------------------------------------------------S-----------
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-----------------------------------------------------------------S--------------
-------S---------S--------------------------------------------------------------
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--------------------------------------------------------------S-----------------
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-------------------------------------------------------S------------------------
--S-----------------------------------------------S-----------------------------
---------------------------------------------------------------------S----------
---------------------------------S---------------------S------------------------
------------------S--------------------------------------------------S----------
------------------------------------------------------------------------S-------
-----SS----S---S--S----S-SS---------S-------------------------S--S----S-S---S---
----S--------S-S---------------S------------------S------S----------------S-----
--------SS---------------S---S-S-------------------------S--------S-------S--SS-
--S----------S-------------------------S------------S--------------SSSSS--------
-----------------------------------------------S---------------------------SS---
--------S------S--------S-------------------------------S--------S------S-------
---------------------S-------------------S-----------------S-------------------S
S-----------------S--S-S------------------------------------------------S-------
----SS-----------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_353
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-------------TAGATCACGAACGGATGGCG-----------------------------------------------
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>reverse_3351
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----------------------------------------------------------------------CGGAAGGACA
TGACCACCAC----------------------------------------------------------------------
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