Multiple sequence alignment - TraesCS5D01G496400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G496400 chr5D 100.000 2608 0 0 1 2608 527142351 527139744 0.000000e+00 4817
1 TraesCS5D01G496400 chr5B 89.343 2130 129 35 548 2608 663175617 663173517 0.000000e+00 2586
2 TraesCS5D01G496400 chr5A 93.058 1354 45 12 669 1980 654124910 654123564 0.000000e+00 1934
3 TraesCS5D01G496400 chr5A 90.801 587 39 7 2029 2608 654123540 654122962 0.000000e+00 771
4 TraesCS5D01G496400 chr4A 75.542 507 77 23 1944 2422 296909513 296910000 3.400000e-49 206
5 TraesCS5D01G496400 chr3B 84.043 188 21 5 2159 2344 669632326 669632146 3.450000e-39 172
6 TraesCS5D01G496400 chr4B 79.121 182 34 4 2243 2421 148167234 148167414 3.520000e-24 122
7 TraesCS5D01G496400 chr4B 75.564 266 50 7 2170 2421 148134087 148134351 1.640000e-22 117


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G496400 chr5D 527139744 527142351 2607 True 4817.0 4817 100.0000 1 2608 1 chr5D.!!$R1 2607
1 TraesCS5D01G496400 chr5B 663173517 663175617 2100 True 2586.0 2586 89.3430 548 2608 1 chr5B.!!$R1 2060
2 TraesCS5D01G496400 chr5A 654122962 654124910 1948 True 1352.5 1934 91.9295 669 2608 2 chr5A.!!$R1 1939

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
166 167 0.030101 GAGAGAAGGACGATGAGCGG 59.970 60.0 0.00 0.00 46.49 5.52 F
409 410 0.033228 ATAGGTCGAGAGCATGCTGC 59.967 55.0 28.27 15.89 45.46 5.25 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1303 1328 0.537143 AGCCACGATTGCCTTCACAA 60.537 50.0 0.00 0.0 0.00 3.33 R
1982 2068 0.754472 GGTGTGGTTAGCCGCCTATA 59.246 55.0 6.71 0.0 44.42 1.31 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.486966 GATTGCGGAGTGCTTGGC 59.513 61.111 0.00 0.00 46.63 4.52
18 19 2.282391 ATTGCGGAGTGCTTGGCA 60.282 55.556 0.00 0.00 46.63 4.92
30 31 4.972733 TTGGCACCGCACAGGCAT 62.973 61.111 0.00 0.00 46.52 4.40
44 45 2.497770 GCATGTGCCATTGGAGCC 59.502 61.111 6.95 0.00 34.31 4.70
45 46 2.802792 CATGTGCCATTGGAGCCG 59.197 61.111 6.95 0.00 0.00 5.52
46 47 3.142838 ATGTGCCATTGGAGCCGC 61.143 61.111 6.95 0.00 0.00 6.53
65 66 3.797353 CGGGGTGGGGGACAGATG 61.797 72.222 0.00 0.00 0.00 2.90
66 67 2.614013 GGGGTGGGGGACAGATGT 60.614 66.667 0.00 0.00 0.00 3.06
67 68 2.677228 GGGTGGGGGACAGATGTG 59.323 66.667 0.00 0.00 0.00 3.21
68 69 1.923395 GGGTGGGGGACAGATGTGA 60.923 63.158 0.00 0.00 0.00 3.58
69 70 1.604378 GGTGGGGGACAGATGTGAG 59.396 63.158 0.00 0.00 0.00 3.51
70 71 1.604378 GTGGGGGACAGATGTGAGG 59.396 63.158 0.00 0.00 0.00 3.86
71 72 1.160870 TGGGGGACAGATGTGAGGT 59.839 57.895 0.00 0.00 0.00 3.85
72 73 0.475632 TGGGGGACAGATGTGAGGTT 60.476 55.000 0.00 0.00 0.00 3.50
73 74 0.253327 GGGGGACAGATGTGAGGTTC 59.747 60.000 0.00 0.00 0.00 3.62
74 75 0.108138 GGGGACAGATGTGAGGTTCG 60.108 60.000 0.00 0.00 0.00 3.95
75 76 0.108138 GGGACAGATGTGAGGTTCGG 60.108 60.000 0.00 0.00 0.00 4.30
76 77 0.108138 GGACAGATGTGAGGTTCGGG 60.108 60.000 0.00 0.00 0.00 5.14
77 78 0.741221 GACAGATGTGAGGTTCGGGC 60.741 60.000 0.00 0.00 0.00 6.13
78 79 1.811266 CAGATGTGAGGTTCGGGCG 60.811 63.158 0.00 0.00 0.00 6.13
79 80 1.982395 AGATGTGAGGTTCGGGCGA 60.982 57.895 0.00 0.00 0.00 5.54
80 81 1.079405 GATGTGAGGTTCGGGCGAA 60.079 57.895 0.00 0.00 0.00 4.70
81 82 0.462047 GATGTGAGGTTCGGGCGAAT 60.462 55.000 0.00 0.00 36.45 3.34
82 83 0.744414 ATGTGAGGTTCGGGCGAATG 60.744 55.000 0.00 0.00 36.45 2.67
83 84 2.106683 GTGAGGTTCGGGCGAATGG 61.107 63.158 0.00 0.00 36.45 3.16
84 85 3.202706 GAGGTTCGGGCGAATGGC 61.203 66.667 0.00 0.00 42.51 4.40
85 86 3.969250 GAGGTTCGGGCGAATGGCA 62.969 63.158 0.00 0.00 46.16 4.92
86 87 3.810896 GGTTCGGGCGAATGGCAC 61.811 66.667 0.00 0.00 46.16 5.01
105 106 2.519302 CCAATGCCGGCCTTAGGG 60.519 66.667 26.77 15.06 0.00 3.53
106 107 2.275418 CAATGCCGGCCTTAGGGT 59.725 61.111 26.77 0.00 34.45 4.34
107 108 2.120909 CAATGCCGGCCTTAGGGTG 61.121 63.158 26.77 4.80 34.45 4.61
108 109 4.506255 ATGCCGGCCTTAGGGTGC 62.506 66.667 26.77 0.00 34.45 5.01
113 114 4.176752 GGCCTTAGGGTGCCGAGG 62.177 72.222 0.00 0.00 38.00 4.63
114 115 3.400054 GCCTTAGGGTGCCGAGGT 61.400 66.667 0.00 0.00 35.28 3.85
115 116 2.584608 CCTTAGGGTGCCGAGGTG 59.415 66.667 0.00 0.00 30.66 4.00
116 117 1.987855 CCTTAGGGTGCCGAGGTGA 60.988 63.158 0.00 0.00 30.66 4.02
117 118 1.338136 CCTTAGGGTGCCGAGGTGAT 61.338 60.000 0.00 0.00 30.66 3.06
118 119 0.179073 CTTAGGGTGCCGAGGTGATG 60.179 60.000 0.00 0.00 0.00 3.07
119 120 0.907704 TTAGGGTGCCGAGGTGATGT 60.908 55.000 0.00 0.00 0.00 3.06
120 121 0.907704 TAGGGTGCCGAGGTGATGTT 60.908 55.000 0.00 0.00 0.00 2.71
121 122 1.745489 GGGTGCCGAGGTGATGTTC 60.745 63.158 0.00 0.00 0.00 3.18
122 123 1.296715 GGTGCCGAGGTGATGTTCT 59.703 57.895 0.00 0.00 0.00 3.01
123 124 1.021390 GGTGCCGAGGTGATGTTCTG 61.021 60.000 0.00 0.00 0.00 3.02
124 125 1.021390 GTGCCGAGGTGATGTTCTGG 61.021 60.000 0.00 0.00 0.00 3.86
125 126 1.296715 GCCGAGGTGATGTTCTGGT 59.703 57.895 0.00 0.00 0.00 4.00
126 127 1.021390 GCCGAGGTGATGTTCTGGTG 61.021 60.000 0.00 0.00 0.00 4.17
127 128 0.321671 CCGAGGTGATGTTCTGGTGT 59.678 55.000 0.00 0.00 0.00 4.16
128 129 1.673033 CCGAGGTGATGTTCTGGTGTC 60.673 57.143 0.00 0.00 0.00 3.67
129 130 1.000843 CGAGGTGATGTTCTGGTGTCA 59.999 52.381 0.00 0.00 0.00 3.58
130 131 2.693069 GAGGTGATGTTCTGGTGTCAG 58.307 52.381 0.00 0.00 42.21 3.51
131 132 1.160137 GGTGATGTTCTGGTGTCAGC 58.840 55.000 0.00 0.00 40.69 4.26
132 133 0.792640 GTGATGTTCTGGTGTCAGCG 59.207 55.000 0.00 0.00 40.69 5.18
133 134 0.320683 TGATGTTCTGGTGTCAGCGG 60.321 55.000 4.37 4.37 40.69 5.52
134 135 1.639298 GATGTTCTGGTGTCAGCGGC 61.639 60.000 5.95 0.00 40.69 6.53
135 136 2.031163 GTTCTGGTGTCAGCGGCT 59.969 61.111 5.95 0.00 40.69 5.52
136 137 2.031012 TTCTGGTGTCAGCGGCTG 59.969 61.111 23.72 23.72 40.69 4.85
137 138 2.506957 TTCTGGTGTCAGCGGCTGA 61.507 57.895 27.76 27.76 40.69 4.26
138 139 2.031012 CTGGTGTCAGCGGCTGAA 59.969 61.111 32.30 19.76 42.46 3.02
139 140 1.597854 CTGGTGTCAGCGGCTGAAA 60.598 57.895 32.30 25.77 42.46 2.69
140 141 1.572085 CTGGTGTCAGCGGCTGAAAG 61.572 60.000 32.30 22.05 42.46 2.62
141 142 1.301716 GGTGTCAGCGGCTGAAAGA 60.302 57.895 32.30 17.31 42.46 2.52
142 143 1.569479 GGTGTCAGCGGCTGAAAGAC 61.569 60.000 32.30 25.74 42.46 3.01
149 150 4.285851 GGCTGAAAGACACGGGAG 57.714 61.111 0.00 0.00 46.27 4.30
150 151 1.671742 GGCTGAAAGACACGGGAGA 59.328 57.895 0.00 0.00 46.27 3.71
151 152 0.390472 GGCTGAAAGACACGGGAGAG 60.390 60.000 0.00 0.00 46.27 3.20
152 153 0.603569 GCTGAAAGACACGGGAGAGA 59.396 55.000 0.00 0.00 34.07 3.10
153 154 1.000955 GCTGAAAGACACGGGAGAGAA 59.999 52.381 0.00 0.00 34.07 2.87
154 155 2.928731 GCTGAAAGACACGGGAGAGAAG 60.929 54.545 0.00 0.00 34.07 2.85
155 156 1.618837 TGAAAGACACGGGAGAGAAGG 59.381 52.381 0.00 0.00 0.00 3.46
156 157 1.893801 GAAAGACACGGGAGAGAAGGA 59.106 52.381 0.00 0.00 0.00 3.36
157 158 1.258676 AAGACACGGGAGAGAAGGAC 58.741 55.000 0.00 0.00 0.00 3.85
158 159 0.961358 AGACACGGGAGAGAAGGACG 60.961 60.000 0.00 0.00 0.00 4.79
159 160 0.959372 GACACGGGAGAGAAGGACGA 60.959 60.000 0.00 0.00 0.00 4.20
160 161 0.323542 ACACGGGAGAGAAGGACGAT 60.324 55.000 0.00 0.00 0.00 3.73
161 162 0.101399 CACGGGAGAGAAGGACGATG 59.899 60.000 0.00 0.00 0.00 3.84
162 163 0.034380 ACGGGAGAGAAGGACGATGA 60.034 55.000 0.00 0.00 0.00 2.92
163 164 0.665835 CGGGAGAGAAGGACGATGAG 59.334 60.000 0.00 0.00 0.00 2.90
164 165 0.387565 GGGAGAGAAGGACGATGAGC 59.612 60.000 0.00 0.00 0.00 4.26
166 167 0.030101 GAGAGAAGGACGATGAGCGG 59.970 60.000 0.00 0.00 46.49 5.52
167 168 0.681564 AGAGAAGGACGATGAGCGGT 60.682 55.000 0.00 0.00 46.49 5.68
168 169 0.173708 GAGAAGGACGATGAGCGGTT 59.826 55.000 0.00 0.00 46.49 4.44
169 170 0.108615 AGAAGGACGATGAGCGGTTG 60.109 55.000 0.00 0.00 46.49 3.77
170 171 1.079127 AAGGACGATGAGCGGTTGG 60.079 57.895 0.00 0.00 46.49 3.77
171 172 1.541310 AAGGACGATGAGCGGTTGGA 61.541 55.000 0.00 0.00 46.49 3.53
172 173 1.519455 GGACGATGAGCGGTTGGAG 60.519 63.158 0.00 0.00 46.49 3.86
173 174 1.511305 GACGATGAGCGGTTGGAGA 59.489 57.895 0.00 0.00 46.49 3.71
174 175 0.108804 GACGATGAGCGGTTGGAGAA 60.109 55.000 0.00 0.00 46.49 2.87
175 176 0.108615 ACGATGAGCGGTTGGAGAAG 60.109 55.000 0.00 0.00 46.49 2.85
176 177 0.807667 CGATGAGCGGTTGGAGAAGG 60.808 60.000 0.00 0.00 36.03 3.46
177 178 0.537188 GATGAGCGGTTGGAGAAGGA 59.463 55.000 0.00 0.00 0.00 3.36
178 179 0.984230 ATGAGCGGTTGGAGAAGGAA 59.016 50.000 0.00 0.00 0.00 3.36
179 180 0.034896 TGAGCGGTTGGAGAAGGAAC 59.965 55.000 0.00 0.00 0.00 3.62
180 181 0.673956 GAGCGGTTGGAGAAGGAACC 60.674 60.000 0.00 0.00 38.65 3.62
181 182 1.072505 GCGGTTGGAGAAGGAACCA 59.927 57.895 0.00 0.00 41.61 3.67
182 183 1.235281 GCGGTTGGAGAAGGAACCAC 61.235 60.000 0.00 0.00 41.61 4.16
183 184 0.605589 CGGTTGGAGAAGGAACCACC 60.606 60.000 0.00 0.00 41.61 4.61
184 185 0.476771 GGTTGGAGAAGGAACCACCA 59.523 55.000 0.00 0.00 41.24 4.17
185 186 1.605753 GTTGGAGAAGGAACCACCAC 58.394 55.000 0.00 0.00 42.04 4.16
186 187 1.143073 GTTGGAGAAGGAACCACCACT 59.857 52.381 0.00 0.00 42.04 4.00
187 188 0.764890 TGGAGAAGGAACCACCACTG 59.235 55.000 0.00 0.00 42.04 3.66
188 189 0.606673 GGAGAAGGAACCACCACTGC 60.607 60.000 0.00 0.00 42.04 4.40
189 190 0.951040 GAGAAGGAACCACCACTGCG 60.951 60.000 0.00 0.00 42.04 5.18
190 191 2.594592 AAGGAACCACCACTGCGC 60.595 61.111 0.00 0.00 42.04 6.09
191 192 3.414136 AAGGAACCACCACTGCGCA 62.414 57.895 10.98 10.98 42.04 6.09
192 193 3.660111 GGAACCACCACTGCGCAC 61.660 66.667 5.66 0.00 38.79 5.34
193 194 2.591715 GAACCACCACTGCGCACT 60.592 61.111 5.66 0.00 0.00 4.40
194 195 1.301401 GAACCACCACTGCGCACTA 60.301 57.895 5.66 0.00 0.00 2.74
195 196 1.291877 GAACCACCACTGCGCACTAG 61.292 60.000 5.66 0.00 0.00 2.57
196 197 1.754380 AACCACCACTGCGCACTAGA 61.754 55.000 5.66 0.00 0.00 2.43
197 198 1.005037 CCACCACTGCGCACTAGAA 60.005 57.895 5.66 0.00 0.00 2.10
198 199 1.016130 CCACCACTGCGCACTAGAAG 61.016 60.000 5.66 0.00 0.00 2.85
199 200 1.016130 CACCACTGCGCACTAGAAGG 61.016 60.000 5.66 7.86 0.00 3.46
200 201 2.103042 CCACTGCGCACTAGAAGGC 61.103 63.158 5.66 0.00 0.00 4.35
201 202 1.374631 CACTGCGCACTAGAAGGCA 60.375 57.895 5.66 1.32 0.00 4.75
202 203 3.791539 CTGCGCACTAGAAGGCAG 58.208 61.111 5.66 15.38 45.74 4.85
203 204 1.079543 CTGCGCACTAGAAGGCAGT 60.080 57.895 5.66 0.00 45.84 4.40
204 205 1.357258 CTGCGCACTAGAAGGCAGTG 61.357 60.000 5.66 0.00 45.84 3.66
207 208 3.479370 CACTAGAAGGCAGTGCGC 58.521 61.111 9.45 0.00 37.22 6.09
225 226 4.415150 CGTCCTGCCCATGCCAGT 62.415 66.667 9.77 0.00 36.33 4.00
226 227 2.753043 GTCCTGCCCATGCCAGTG 60.753 66.667 9.77 0.00 36.33 3.66
227 228 4.051167 TCCTGCCCATGCCAGTGG 62.051 66.667 4.20 4.20 39.05 4.00
238 239 3.052082 CCAGTGGGCACGCTCTTG 61.052 66.667 0.00 0.00 34.61 3.02
239 240 3.052082 CAGTGGGCACGCTCTTGG 61.052 66.667 0.00 0.00 34.61 3.61
240 241 4.335647 AGTGGGCACGCTCTTGGG 62.336 66.667 0.00 0.00 36.20 4.12
243 244 4.344865 GGGCACGCTCTTGGGGAA 62.345 66.667 0.00 0.00 0.00 3.97
244 245 2.747855 GGCACGCTCTTGGGGAAG 60.748 66.667 0.00 0.00 0.00 3.46
245 246 2.747855 GCACGCTCTTGGGGAAGG 60.748 66.667 0.00 0.00 0.00 3.46
246 247 2.747855 CACGCTCTTGGGGAAGGC 60.748 66.667 0.00 0.00 0.00 4.35
247 248 4.035102 ACGCTCTTGGGGAAGGCC 62.035 66.667 0.00 0.00 0.00 5.19
250 251 4.803908 CTCTTGGGGAAGGCCGCC 62.804 72.222 0.00 0.00 46.03 6.13
258 259 4.704833 GAAGGCCGCCAGCTCACA 62.705 66.667 13.15 0.00 43.05 3.58
299 300 2.744318 CGGCGCCCACACACATTA 60.744 61.111 23.46 0.00 0.00 1.90
300 301 2.112198 CGGCGCCCACACACATTAT 61.112 57.895 23.46 0.00 0.00 1.28
301 302 1.433064 GGCGCCCACACACATTATG 59.567 57.895 18.11 0.00 0.00 1.90
302 303 1.312371 GGCGCCCACACACATTATGT 61.312 55.000 18.11 0.00 44.81 2.29
311 312 3.058115 CACATTATGTGTCCGGCGA 57.942 52.632 16.45 0.00 43.08 5.54
312 313 0.930310 CACATTATGTGTCCGGCGAG 59.070 55.000 16.45 0.00 43.08 5.03
313 314 0.179084 ACATTATGTGTCCGGCGAGG 60.179 55.000 9.30 0.00 35.77 4.63
314 315 0.880278 CATTATGTGTCCGGCGAGGG 60.880 60.000 9.30 0.00 41.52 4.30
332 333 3.772619 GCTGGGCCATTACGTAGAA 57.227 52.632 6.72 0.00 0.00 2.10
333 334 1.296727 GCTGGGCCATTACGTAGAAC 58.703 55.000 6.72 0.00 0.00 3.01
334 335 1.406341 GCTGGGCCATTACGTAGAACA 60.406 52.381 6.72 0.00 0.00 3.18
335 336 2.745152 GCTGGGCCATTACGTAGAACAT 60.745 50.000 6.72 0.00 0.00 2.71
336 337 2.872245 CTGGGCCATTACGTAGAACATG 59.128 50.000 6.72 0.00 0.00 3.21
337 338 2.218603 GGGCCATTACGTAGAACATGG 58.781 52.381 16.47 16.47 39.48 3.66
345 346 2.589890 GTAGAACATGGCTACGGCG 58.410 57.895 4.80 4.80 39.81 6.46
346 347 0.874607 GTAGAACATGGCTACGGCGG 60.875 60.000 13.24 0.00 39.81 6.13
347 348 1.038681 TAGAACATGGCTACGGCGGA 61.039 55.000 13.24 0.00 39.81 5.54
348 349 2.125269 AACATGGCTACGGCGGAC 60.125 61.111 13.24 0.00 39.81 4.79
365 366 4.444024 CGCGTTGTCATGGGCGTG 62.444 66.667 0.00 0.00 43.36 5.34
366 367 4.101790 GCGTTGTCATGGGCGTGG 62.102 66.667 0.00 0.00 0.00 4.94
367 368 3.430862 CGTTGTCATGGGCGTGGG 61.431 66.667 0.00 0.00 0.00 4.61
368 369 3.747976 GTTGTCATGGGCGTGGGC 61.748 66.667 0.00 0.00 38.90 5.36
369 370 3.965258 TTGTCATGGGCGTGGGCT 61.965 61.111 0.00 0.00 39.81 5.19
370 371 3.505790 TTGTCATGGGCGTGGGCTT 62.506 57.895 0.00 0.00 39.81 4.35
371 372 3.443045 GTCATGGGCGTGGGCTTG 61.443 66.667 0.00 0.00 39.81 4.01
372 373 4.738998 TCATGGGCGTGGGCTTGG 62.739 66.667 0.00 0.00 39.81 3.61
384 385 3.741476 GCTTGGCGCAGGTGGAAG 61.741 66.667 10.83 1.99 38.92 3.46
385 386 2.032528 CTTGGCGCAGGTGGAAGA 59.967 61.111 10.83 0.00 0.00 2.87
386 387 2.281484 TTGGCGCAGGTGGAAGAC 60.281 61.111 10.83 0.00 0.00 3.01
387 388 3.113514 TTGGCGCAGGTGGAAGACA 62.114 57.895 10.83 0.00 0.00 3.41
388 389 2.743928 GGCGCAGGTGGAAGACAG 60.744 66.667 10.83 0.00 0.00 3.51
389 390 2.743928 GCGCAGGTGGAAGACAGG 60.744 66.667 0.30 0.00 0.00 4.00
390 391 3.059982 CGCAGGTGGAAGACAGGA 58.940 61.111 0.00 0.00 0.00 3.86
391 392 1.599047 CGCAGGTGGAAGACAGGAT 59.401 57.895 0.00 0.00 0.00 3.24
392 393 0.824109 CGCAGGTGGAAGACAGGATA 59.176 55.000 0.00 0.00 0.00 2.59
393 394 1.202463 CGCAGGTGGAAGACAGGATAG 60.202 57.143 0.00 0.00 0.00 2.08
394 395 1.139853 GCAGGTGGAAGACAGGATAGG 59.860 57.143 0.00 0.00 0.00 2.57
395 396 2.472029 CAGGTGGAAGACAGGATAGGT 58.528 52.381 0.00 0.00 0.00 3.08
396 397 2.432510 CAGGTGGAAGACAGGATAGGTC 59.567 54.545 0.00 0.00 35.50 3.85
397 398 1.409427 GGTGGAAGACAGGATAGGTCG 59.591 57.143 0.00 0.00 40.20 4.79
398 399 2.376109 GTGGAAGACAGGATAGGTCGA 58.624 52.381 0.00 0.00 40.20 4.20
399 400 2.359531 GTGGAAGACAGGATAGGTCGAG 59.640 54.545 0.00 0.00 40.20 4.04
400 401 2.241430 TGGAAGACAGGATAGGTCGAGA 59.759 50.000 0.00 0.00 40.20 4.04
401 402 2.882137 GGAAGACAGGATAGGTCGAGAG 59.118 54.545 0.00 0.00 40.20 3.20
402 403 1.975660 AGACAGGATAGGTCGAGAGC 58.024 55.000 0.00 0.00 40.20 4.09
403 404 1.213182 AGACAGGATAGGTCGAGAGCA 59.787 52.381 5.06 0.00 40.20 4.26
404 405 2.158534 AGACAGGATAGGTCGAGAGCAT 60.159 50.000 5.06 0.00 40.20 3.79
405 406 1.959985 ACAGGATAGGTCGAGAGCATG 59.040 52.381 5.06 0.00 0.00 4.06
406 407 0.965439 AGGATAGGTCGAGAGCATGC 59.035 55.000 10.51 10.51 0.00 4.06
407 408 0.965439 GGATAGGTCGAGAGCATGCT 59.035 55.000 22.92 22.92 0.00 3.79
408 409 1.336702 GGATAGGTCGAGAGCATGCTG 60.337 57.143 28.27 11.47 0.00 4.41
409 410 0.033228 ATAGGTCGAGAGCATGCTGC 59.967 55.000 28.27 15.89 45.46 5.25
410 411 2.021068 TAGGTCGAGAGCATGCTGCC 62.021 60.000 28.27 17.76 46.52 4.85
411 412 3.260483 GTCGAGAGCATGCTGCCG 61.260 66.667 28.27 25.79 46.52 5.69
412 413 3.763356 TCGAGAGCATGCTGCCGT 61.763 61.111 28.27 6.55 46.52 5.68
413 414 3.561213 CGAGAGCATGCTGCCGTG 61.561 66.667 28.27 6.27 46.52 4.94
419 420 3.725459 CATGCTGCCGTGCACGAA 61.725 61.111 39.10 25.00 46.33 3.85
420 421 3.425713 ATGCTGCCGTGCACGAAG 61.426 61.111 39.10 32.30 46.33 3.79
421 422 3.881952 ATGCTGCCGTGCACGAAGA 62.882 57.895 39.10 22.79 46.33 2.87
422 423 3.782244 GCTGCCGTGCACGAAGAG 61.782 66.667 39.10 28.48 43.02 2.85
423 424 3.114616 CTGCCGTGCACGAAGAGG 61.115 66.667 39.10 22.97 43.02 3.69
424 425 3.573772 CTGCCGTGCACGAAGAGGA 62.574 63.158 39.10 22.31 43.02 3.71
425 426 3.112709 GCCGTGCACGAAGAGGAC 61.113 66.667 39.10 15.36 43.02 3.85
428 429 4.891566 GTGCACGAAGAGGACGAT 57.108 55.556 0.00 0.00 27.45 3.73
429 430 3.123674 GTGCACGAAGAGGACGATT 57.876 52.632 0.00 0.00 27.45 3.34
430 431 0.716108 GTGCACGAAGAGGACGATTG 59.284 55.000 0.00 0.00 27.45 2.67
431 432 1.014044 TGCACGAAGAGGACGATTGC 61.014 55.000 0.00 0.00 34.81 3.56
432 433 1.696832 GCACGAAGAGGACGATTGCC 61.697 60.000 0.00 0.00 30.47 4.52
433 434 1.153823 ACGAAGAGGACGATTGCCG 60.154 57.895 0.00 0.00 45.44 5.69
434 435 1.878522 CGAAGAGGACGATTGCCGG 60.879 63.158 0.00 0.00 43.93 6.13
440 441 2.890474 GACGATTGCCGGCGACAT 60.890 61.111 21.40 12.40 43.93 3.06
441 442 2.435938 ACGATTGCCGGCGACATT 60.436 55.556 21.40 2.32 43.93 2.71
442 443 2.023181 CGATTGCCGGCGACATTG 59.977 61.111 21.40 12.16 33.91 2.82
443 444 2.749865 CGATTGCCGGCGACATTGT 61.750 57.895 21.40 1.35 33.91 2.71
444 445 1.425267 CGATTGCCGGCGACATTGTA 61.425 55.000 21.40 0.00 33.91 2.41
445 446 0.304705 GATTGCCGGCGACATTGTAG 59.695 55.000 21.40 0.00 0.00 2.74
446 447 0.107897 ATTGCCGGCGACATTGTAGA 60.108 50.000 21.40 0.00 0.00 2.59
447 448 0.739462 TTGCCGGCGACATTGTAGAG 60.739 55.000 23.90 0.00 0.00 2.43
448 449 1.141019 GCCGGCGACATTGTAGAGA 59.859 57.895 12.58 0.00 0.00 3.10
449 450 0.249489 GCCGGCGACATTGTAGAGAT 60.249 55.000 12.58 0.00 0.00 2.75
450 451 1.000607 GCCGGCGACATTGTAGAGATA 60.001 52.381 12.58 0.00 0.00 1.98
451 452 2.922758 GCCGGCGACATTGTAGAGATAG 60.923 54.545 12.58 0.00 0.00 2.08
452 453 2.552743 CCGGCGACATTGTAGAGATAGA 59.447 50.000 9.30 0.00 0.00 1.98
453 454 3.365465 CCGGCGACATTGTAGAGATAGAG 60.365 52.174 9.30 0.00 0.00 2.43
454 455 3.498777 CGGCGACATTGTAGAGATAGAGA 59.501 47.826 0.00 0.00 0.00 3.10
455 456 4.377943 CGGCGACATTGTAGAGATAGAGAG 60.378 50.000 0.00 0.00 0.00 3.20
456 457 4.757657 GGCGACATTGTAGAGATAGAGAGA 59.242 45.833 0.67 0.00 0.00 3.10
457 458 5.106712 GGCGACATTGTAGAGATAGAGAGAG 60.107 48.000 0.67 0.00 0.00 3.20
458 459 5.106712 GCGACATTGTAGAGATAGAGAGAGG 60.107 48.000 0.67 0.00 0.00 3.69
459 460 6.227522 CGACATTGTAGAGATAGAGAGAGGA 58.772 44.000 0.00 0.00 0.00 3.71
460 461 6.708502 CGACATTGTAGAGATAGAGAGAGGAA 59.291 42.308 0.00 0.00 0.00 3.36
461 462 7.227711 CGACATTGTAGAGATAGAGAGAGGAAA 59.772 40.741 0.00 0.00 0.00 3.13
462 463 8.830915 ACATTGTAGAGATAGAGAGAGGAAAA 57.169 34.615 0.00 0.00 0.00 2.29
463 464 8.912988 ACATTGTAGAGATAGAGAGAGGAAAAG 58.087 37.037 0.00 0.00 0.00 2.27
464 465 8.912988 CATTGTAGAGATAGAGAGAGGAAAAGT 58.087 37.037 0.00 0.00 0.00 2.66
466 467 9.621629 TTGTAGAGATAGAGAGAGGAAAAGTAG 57.378 37.037 0.00 0.00 0.00 2.57
467 468 8.215050 TGTAGAGATAGAGAGAGGAAAAGTAGG 58.785 40.741 0.00 0.00 0.00 3.18
468 469 7.460214 AGAGATAGAGAGAGGAAAAGTAGGA 57.540 40.000 0.00 0.00 0.00 2.94
469 470 7.878495 AGAGATAGAGAGAGGAAAAGTAGGAA 58.122 38.462 0.00 0.00 0.00 3.36
470 471 7.778382 AGAGATAGAGAGAGGAAAAGTAGGAAC 59.222 40.741 0.00 0.00 0.00 3.62
471 472 6.837048 AGATAGAGAGAGGAAAAGTAGGAACC 59.163 42.308 0.00 0.00 0.00 3.62
472 473 5.018374 AGAGAGAGGAAAAGTAGGAACCT 57.982 43.478 0.00 0.00 0.00 3.50
473 474 5.407936 AGAGAGAGGAAAAGTAGGAACCTT 58.592 41.667 0.00 0.00 0.00 3.50
474 475 5.247337 AGAGAGAGGAAAAGTAGGAACCTTG 59.753 44.000 0.00 0.00 0.00 3.61
475 476 5.155905 AGAGAGGAAAAGTAGGAACCTTGA 58.844 41.667 0.00 0.00 0.00 3.02
476 477 5.788014 AGAGAGGAAAAGTAGGAACCTTGAT 59.212 40.000 0.00 0.00 0.00 2.57
477 478 5.810095 AGAGGAAAAGTAGGAACCTTGATG 58.190 41.667 0.00 0.00 0.00 3.07
478 479 4.336280 AGGAAAAGTAGGAACCTTGATGC 58.664 43.478 0.00 0.00 0.00 3.91
479 480 4.079253 GGAAAAGTAGGAACCTTGATGCA 58.921 43.478 0.00 0.00 0.00 3.96
480 481 4.522789 GGAAAAGTAGGAACCTTGATGCAA 59.477 41.667 0.00 0.00 0.00 4.08
481 482 5.010617 GGAAAAGTAGGAACCTTGATGCAAA 59.989 40.000 0.00 0.00 0.00 3.68
482 483 6.462347 GGAAAAGTAGGAACCTTGATGCAAAA 60.462 38.462 0.00 0.00 0.00 2.44
483 484 5.712152 AAGTAGGAACCTTGATGCAAAAG 57.288 39.130 0.00 0.00 0.00 2.27
484 485 4.985538 AGTAGGAACCTTGATGCAAAAGA 58.014 39.130 12.76 0.00 0.00 2.52
485 486 5.385198 AGTAGGAACCTTGATGCAAAAGAA 58.615 37.500 12.76 0.00 0.00 2.52
486 487 4.861102 AGGAACCTTGATGCAAAAGAAG 57.139 40.909 12.76 2.98 0.00 2.85
487 488 4.218312 AGGAACCTTGATGCAAAAGAAGT 58.782 39.130 12.76 2.41 0.00 3.01
488 489 4.038402 AGGAACCTTGATGCAAAAGAAGTG 59.962 41.667 12.76 0.99 0.00 3.16
489 490 4.202151 GGAACCTTGATGCAAAAGAAGTGT 60.202 41.667 12.76 1.52 0.00 3.55
490 491 4.574599 ACCTTGATGCAAAAGAAGTGTC 57.425 40.909 12.76 0.00 0.00 3.67
491 492 3.319122 ACCTTGATGCAAAAGAAGTGTCC 59.681 43.478 12.76 0.00 0.00 4.02
492 493 3.318839 CCTTGATGCAAAAGAAGTGTCCA 59.681 43.478 12.76 0.00 0.00 4.02
493 494 4.021719 CCTTGATGCAAAAGAAGTGTCCAT 60.022 41.667 12.76 0.00 0.00 3.41
494 495 4.508461 TGATGCAAAAGAAGTGTCCATG 57.492 40.909 0.00 0.00 0.00 3.66
495 496 3.890756 TGATGCAAAAGAAGTGTCCATGT 59.109 39.130 0.00 0.00 0.00 3.21
496 497 3.713858 TGCAAAAGAAGTGTCCATGTG 57.286 42.857 0.00 0.00 0.00 3.21
497 498 2.223782 TGCAAAAGAAGTGTCCATGTGC 60.224 45.455 0.00 0.00 0.00 4.57
498 499 2.863704 GCAAAAGAAGTGTCCATGTGCC 60.864 50.000 0.00 0.00 0.00 5.01
499 500 2.624838 CAAAAGAAGTGTCCATGTGCCT 59.375 45.455 0.00 0.00 0.00 4.75
500 501 2.664402 AAGAAGTGTCCATGTGCCTT 57.336 45.000 0.00 0.00 0.00 4.35
501 502 2.664402 AGAAGTGTCCATGTGCCTTT 57.336 45.000 0.00 0.00 0.00 3.11
502 503 2.949447 AGAAGTGTCCATGTGCCTTTT 58.051 42.857 0.00 0.00 0.00 2.27
503 504 3.299503 AGAAGTGTCCATGTGCCTTTTT 58.700 40.909 0.00 0.00 0.00 1.94
522 523 3.371087 TTTTTGCAAAACCGGCTCC 57.629 47.368 23.79 0.00 0.00 4.70
523 524 0.179070 TTTTTGCAAAACCGGCTCCC 60.179 50.000 23.79 0.00 0.00 4.30
541 542 3.971858 CGACGAGCGGGATCTATAC 57.028 57.895 0.00 0.00 36.03 1.47
542 543 0.447011 CGACGAGCGGGATCTATACC 59.553 60.000 0.00 0.00 36.03 2.73
543 544 1.823797 GACGAGCGGGATCTATACCT 58.176 55.000 0.00 0.00 0.00 3.08
544 545 1.469308 GACGAGCGGGATCTATACCTG 59.531 57.143 0.00 0.00 36.91 4.00
545 546 1.202903 ACGAGCGGGATCTATACCTGT 60.203 52.381 0.00 0.00 36.29 4.00
546 547 1.200252 CGAGCGGGATCTATACCTGTG 59.800 57.143 0.00 0.00 36.29 3.66
553 554 5.611374 CGGGATCTATACCTGTGTCAAAAT 58.389 41.667 0.00 0.00 0.00 1.82
564 565 4.201851 CCTGTGTCAAAATGCTCTAATCCG 60.202 45.833 0.00 0.00 0.00 4.18
570 571 2.550830 AATGCTCTAATCCGCCGATT 57.449 45.000 5.61 5.61 41.67 3.34
571 572 3.678056 AATGCTCTAATCCGCCGATTA 57.322 42.857 7.20 7.20 39.49 1.75
584 585 2.222213 CGCCGATTAGTTGTTCACACAA 59.778 45.455 0.00 0.00 40.82 3.33
588 589 5.173131 GCCGATTAGTTGTTCACACAAAAAG 59.827 40.000 0.00 0.00 44.72 2.27
589 590 5.173131 CCGATTAGTTGTTCACACAAAAAGC 59.827 40.000 0.00 0.00 44.72 3.51
595 596 6.451393 AGTTGTTCACACAAAAAGCTTAACA 58.549 32.000 0.00 0.76 44.72 2.41
603 604 6.356977 CACACAAAAAGCTTAACATAGACGTG 59.643 38.462 0.00 0.49 0.00 4.49
606 607 6.707161 ACAAAAAGCTTAACATAGACGTGGTA 59.293 34.615 0.00 0.00 0.00 3.25
614 615 5.796350 AACATAGACGTGGTATCTTTTGC 57.204 39.130 0.00 0.00 0.00 3.68
617 618 3.134574 AGACGTGGTATCTTTTGCCAA 57.865 42.857 0.00 0.00 42.26 4.52
618 619 3.686016 AGACGTGGTATCTTTTGCCAAT 58.314 40.909 0.00 0.00 42.26 3.16
619 620 4.079253 AGACGTGGTATCTTTTGCCAATT 58.921 39.130 0.00 0.00 42.26 2.32
620 621 4.522789 AGACGTGGTATCTTTTGCCAATTT 59.477 37.500 0.00 0.00 42.26 1.82
621 622 5.010617 AGACGTGGTATCTTTTGCCAATTTT 59.989 36.000 0.00 0.00 42.26 1.82
622 623 5.606505 ACGTGGTATCTTTTGCCAATTTTT 58.393 33.333 0.00 0.00 42.26 1.94
656 657 8.745464 TTGTAAAAGTGTGTTTTCTACAAACC 57.255 30.769 0.00 0.00 44.72 3.27
657 658 8.113173 TGTAAAAGTGTGTTTTCTACAAACCT 57.887 30.769 0.00 0.00 44.72 3.50
658 659 9.228949 TGTAAAAGTGTGTTTTCTACAAACCTA 57.771 29.630 0.00 0.00 44.72 3.08
663 664 7.789026 AGTGTGTTTTCTACAAACCTACTAGT 58.211 34.615 0.00 0.00 44.72 2.57
664 665 8.917088 AGTGTGTTTTCTACAAACCTACTAGTA 58.083 33.333 1.89 1.89 44.72 1.82
665 666 9.702494 GTGTGTTTTCTACAAACCTACTAGTAT 57.298 33.333 2.33 0.00 38.80 2.12
673 674 9.113838 TCTACAAACCTACTAGTATTTACTCGG 57.886 37.037 2.33 1.88 37.73 4.63
847 856 1.468908 GCTGGAGATAGATGATCCGCG 60.469 57.143 0.00 0.00 35.78 6.46
848 857 0.528017 TGGAGATAGATGATCCGCGC 59.472 55.000 0.00 0.00 35.78 6.86
910 919 0.320073 TTTCGCCTTACACCTCACCG 60.320 55.000 0.00 0.00 0.00 4.94
1294 1319 2.150397 ACGTCAGTACACTCCTTTGC 57.850 50.000 0.00 0.00 0.00 3.68
1303 1328 1.276421 ACACTCCTTTGCTAGCATCGT 59.724 47.619 20.13 8.50 0.00 3.73
1461 1520 4.676196 GCAATGGAATGCTTCTGTTAGTGG 60.676 45.833 0.00 0.00 43.06 4.00
1470 1534 4.631377 TGCTTCTGTTAGTGGATTCGATTG 59.369 41.667 0.00 0.00 0.00 2.67
1492 1556 2.981805 CCAAATAATGATGAATGGCGCG 59.018 45.455 0.00 0.00 0.00 6.86
1493 1557 3.550639 CCAAATAATGATGAATGGCGCGT 60.551 43.478 8.43 0.00 0.00 6.01
1620 1684 0.528924 TGCTTAAGCGAACGAGGCTA 59.471 50.000 21.97 0.00 45.83 3.93
1764 1828 5.094387 TCATGGACCTAATAATCTCCTCCC 58.906 45.833 0.00 0.00 0.00 4.30
1824 1888 5.280945 ACAAAAGATCGGTTGTTCATGTTG 58.719 37.500 10.28 0.00 34.29 3.33
1860 1924 1.332997 GAGCAATACAGCATGGACAGC 59.667 52.381 0.00 0.00 43.62 4.40
1861 1925 1.097232 GCAATACAGCATGGACAGCA 58.903 50.000 0.00 0.00 43.62 4.41
1862 1926 1.202222 GCAATACAGCATGGACAGCAC 60.202 52.381 0.00 0.00 43.62 4.40
2007 2093 4.515404 GCTAACCACACCTAGCCG 57.485 61.111 0.00 0.00 35.50 5.52
2044 2130 1.149101 TGGATTATCCTCCTTGGCCC 58.851 55.000 12.91 0.00 37.46 5.80
2054 2140 0.538746 TCCTTGGCCCGAAAACTTCC 60.539 55.000 0.00 0.00 0.00 3.46
2055 2141 0.825840 CCTTGGCCCGAAAACTTCCA 60.826 55.000 0.00 0.00 0.00 3.53
2129 2215 3.393970 CCTTCTCCCGCCTGAGCA 61.394 66.667 0.00 0.00 39.83 4.26
2143 2229 0.030705 TGAGCAGCTATCCCTTCCCT 60.031 55.000 0.00 0.00 0.00 4.20
2146 2232 0.109532 GCAGCTATCCCTTCCCTTCC 59.890 60.000 0.00 0.00 0.00 3.46
2364 2450 1.246056 TGGCAAGGCTGTTGCATCTC 61.246 55.000 20.96 8.34 46.58 2.75
2367 2453 1.377725 AAGGCTGTTGCATCTCCGG 60.378 57.895 0.00 0.00 41.91 5.14
2372 2458 2.434185 GTTGCATCTCCGGCGACA 60.434 61.111 9.30 0.00 43.63 4.35
2429 2515 2.610727 GCGAGCAAGGAAGTAGACAACT 60.611 50.000 0.00 0.00 41.49 3.16
2439 2525 4.394300 GGAAGTAGACAACTGCTACGTCTA 59.606 45.833 17.46 0.00 42.81 2.59
2591 2685 2.039787 TGCCATGGACCCCGTCTA 59.960 61.111 18.40 0.00 32.47 2.59
2592 2686 2.363975 TGCCATGGACCCCGTCTAC 61.364 63.158 18.40 0.00 32.47 2.59
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.334946 TGCCAAGCACTCCGCAATC 61.335 57.895 0.00 0.00 46.13 2.67
1 2 2.282391 TGCCAAGCACTCCGCAAT 60.282 55.556 0.00 0.00 46.13 3.56
13 14 4.972733 ATGCCTGTGCGGTGCCAA 62.973 61.111 0.00 0.00 41.78 4.52
16 17 4.409218 CACATGCCTGTGCGGTGC 62.409 66.667 9.26 0.00 45.79 5.01
48 49 3.797353 CATCTGTCCCCCACCCCG 61.797 72.222 0.00 0.00 0.00 5.73
49 50 2.614013 ACATCTGTCCCCCACCCC 60.614 66.667 0.00 0.00 0.00 4.95
50 51 1.915078 CTCACATCTGTCCCCCACCC 61.915 65.000 0.00 0.00 0.00 4.61
51 52 1.604378 CTCACATCTGTCCCCCACC 59.396 63.158 0.00 0.00 0.00 4.61
52 53 1.201429 ACCTCACATCTGTCCCCCAC 61.201 60.000 0.00 0.00 0.00 4.61
53 54 0.475632 AACCTCACATCTGTCCCCCA 60.476 55.000 0.00 0.00 0.00 4.96
54 55 0.253327 GAACCTCACATCTGTCCCCC 59.747 60.000 0.00 0.00 0.00 5.40
55 56 0.108138 CGAACCTCACATCTGTCCCC 60.108 60.000 0.00 0.00 0.00 4.81
56 57 0.108138 CCGAACCTCACATCTGTCCC 60.108 60.000 0.00 0.00 0.00 4.46
57 58 0.108138 CCCGAACCTCACATCTGTCC 60.108 60.000 0.00 0.00 0.00 4.02
58 59 0.741221 GCCCGAACCTCACATCTGTC 60.741 60.000 0.00 0.00 0.00 3.51
59 60 1.296715 GCCCGAACCTCACATCTGT 59.703 57.895 0.00 0.00 0.00 3.41
60 61 1.811266 CGCCCGAACCTCACATCTG 60.811 63.158 0.00 0.00 0.00 2.90
61 62 1.541310 TTCGCCCGAACCTCACATCT 61.541 55.000 0.00 0.00 0.00 2.90
62 63 0.462047 ATTCGCCCGAACCTCACATC 60.462 55.000 5.14 0.00 36.91 3.06
63 64 0.744414 CATTCGCCCGAACCTCACAT 60.744 55.000 5.14 0.00 36.91 3.21
64 65 1.375396 CATTCGCCCGAACCTCACA 60.375 57.895 5.14 0.00 36.91 3.58
65 66 2.106683 CCATTCGCCCGAACCTCAC 61.107 63.158 5.14 0.00 36.91 3.51
66 67 2.267642 CCATTCGCCCGAACCTCA 59.732 61.111 5.14 0.00 36.91 3.86
67 68 3.202706 GCCATTCGCCCGAACCTC 61.203 66.667 5.14 0.00 36.91 3.85
68 69 4.028490 TGCCATTCGCCCGAACCT 62.028 61.111 5.14 0.00 36.91 3.50
69 70 3.810896 GTGCCATTCGCCCGAACC 61.811 66.667 5.14 0.00 36.91 3.62
70 71 4.160635 CGTGCCATTCGCCCGAAC 62.161 66.667 5.14 0.00 41.31 3.95
77 78 2.580326 GCATTGGCGTGCCATTCG 60.580 61.111 15.40 7.33 46.64 3.34
88 89 2.519302 CCCTAAGGCCGGCATTGG 60.519 66.667 34.85 31.23 0.00 3.16
89 90 2.120909 CACCCTAAGGCCGGCATTG 61.121 63.158 34.85 23.16 36.11 2.82
90 91 2.275418 CACCCTAAGGCCGGCATT 59.725 61.111 30.81 30.81 36.11 3.56
91 92 4.506255 GCACCCTAAGGCCGGCAT 62.506 66.667 30.85 21.35 36.11 4.40
96 97 4.176752 CCTCGGCACCCTAAGGCC 62.177 72.222 0.00 0.00 46.80 5.19
97 98 3.400054 ACCTCGGCACCCTAAGGC 61.400 66.667 0.00 0.00 36.11 4.35
98 99 1.338136 ATCACCTCGGCACCCTAAGG 61.338 60.000 0.00 0.00 40.04 2.69
99 100 0.179073 CATCACCTCGGCACCCTAAG 60.179 60.000 0.00 0.00 0.00 2.18
100 101 0.907704 ACATCACCTCGGCACCCTAA 60.908 55.000 0.00 0.00 0.00 2.69
101 102 0.907704 AACATCACCTCGGCACCCTA 60.908 55.000 0.00 0.00 0.00 3.53
102 103 2.185310 GAACATCACCTCGGCACCCT 62.185 60.000 0.00 0.00 0.00 4.34
103 104 1.745489 GAACATCACCTCGGCACCC 60.745 63.158 0.00 0.00 0.00 4.61
104 105 1.021390 CAGAACATCACCTCGGCACC 61.021 60.000 0.00 0.00 0.00 5.01
105 106 1.021390 CCAGAACATCACCTCGGCAC 61.021 60.000 0.00 0.00 0.00 5.01
106 107 1.296392 CCAGAACATCACCTCGGCA 59.704 57.895 0.00 0.00 0.00 5.69
107 108 1.021390 CACCAGAACATCACCTCGGC 61.021 60.000 0.00 0.00 0.00 5.54
108 109 0.321671 ACACCAGAACATCACCTCGG 59.678 55.000 0.00 0.00 0.00 4.63
109 110 1.000843 TGACACCAGAACATCACCTCG 59.999 52.381 0.00 0.00 0.00 4.63
110 111 2.693069 CTGACACCAGAACATCACCTC 58.307 52.381 0.00 0.00 43.02 3.85
111 112 1.271054 GCTGACACCAGAACATCACCT 60.271 52.381 0.00 0.00 43.02 4.00
112 113 1.160137 GCTGACACCAGAACATCACC 58.840 55.000 0.00 0.00 43.02 4.02
113 114 0.792640 CGCTGACACCAGAACATCAC 59.207 55.000 0.00 0.00 43.02 3.06
114 115 0.320683 CCGCTGACACCAGAACATCA 60.321 55.000 0.00 0.00 43.02 3.07
115 116 1.639298 GCCGCTGACACCAGAACATC 61.639 60.000 0.00 0.00 43.02 3.06
116 117 1.672356 GCCGCTGACACCAGAACAT 60.672 57.895 0.00 0.00 43.02 2.71
117 118 2.280797 GCCGCTGACACCAGAACA 60.281 61.111 0.00 0.00 43.02 3.18
118 119 2.031163 AGCCGCTGACACCAGAAC 59.969 61.111 0.00 0.00 43.02 3.01
119 120 2.031012 CAGCCGCTGACACCAGAA 59.969 61.111 15.74 0.00 43.02 3.02
120 121 2.038814 TTTCAGCCGCTGACACCAGA 62.039 55.000 22.82 4.27 40.46 3.86
121 122 1.572085 CTTTCAGCCGCTGACACCAG 61.572 60.000 22.82 12.13 40.46 4.00
122 123 1.597854 CTTTCAGCCGCTGACACCA 60.598 57.895 22.82 5.45 40.46 4.17
123 124 1.301716 TCTTTCAGCCGCTGACACC 60.302 57.895 22.82 0.00 40.46 4.16
124 125 0.880278 TGTCTTTCAGCCGCTGACAC 60.880 55.000 22.82 18.23 40.46 3.67
125 126 0.880278 GTGTCTTTCAGCCGCTGACA 60.880 55.000 22.82 15.53 40.46 3.58
126 127 1.862806 GTGTCTTTCAGCCGCTGAC 59.137 57.895 22.82 12.31 40.46 3.51
127 128 1.664649 CGTGTCTTTCAGCCGCTGA 60.665 57.895 19.36 19.36 38.87 4.26
128 129 2.671177 CCGTGTCTTTCAGCCGCTG 61.671 63.158 14.62 14.62 0.00 5.18
129 130 2.357517 CCGTGTCTTTCAGCCGCT 60.358 61.111 0.00 0.00 0.00 5.52
130 131 3.423154 CCCGTGTCTTTCAGCCGC 61.423 66.667 0.00 0.00 0.00 6.53
131 132 1.738099 CTCCCGTGTCTTTCAGCCG 60.738 63.158 0.00 0.00 0.00 5.52
132 133 0.390472 CTCTCCCGTGTCTTTCAGCC 60.390 60.000 0.00 0.00 0.00 4.85
133 134 0.603569 TCTCTCCCGTGTCTTTCAGC 59.396 55.000 0.00 0.00 0.00 4.26
134 135 2.353208 CCTTCTCTCCCGTGTCTTTCAG 60.353 54.545 0.00 0.00 0.00 3.02
135 136 1.618837 CCTTCTCTCCCGTGTCTTTCA 59.381 52.381 0.00 0.00 0.00 2.69
136 137 1.893801 TCCTTCTCTCCCGTGTCTTTC 59.106 52.381 0.00 0.00 0.00 2.62
137 138 1.619332 GTCCTTCTCTCCCGTGTCTTT 59.381 52.381 0.00 0.00 0.00 2.52
138 139 1.258676 GTCCTTCTCTCCCGTGTCTT 58.741 55.000 0.00 0.00 0.00 3.01
139 140 0.961358 CGTCCTTCTCTCCCGTGTCT 60.961 60.000 0.00 0.00 0.00 3.41
140 141 0.959372 TCGTCCTTCTCTCCCGTGTC 60.959 60.000 0.00 0.00 0.00 3.67
141 142 0.323542 ATCGTCCTTCTCTCCCGTGT 60.324 55.000 0.00 0.00 0.00 4.49
142 143 0.101399 CATCGTCCTTCTCTCCCGTG 59.899 60.000 0.00 0.00 0.00 4.94
143 144 0.034380 TCATCGTCCTTCTCTCCCGT 60.034 55.000 0.00 0.00 0.00 5.28
144 145 0.665835 CTCATCGTCCTTCTCTCCCG 59.334 60.000 0.00 0.00 0.00 5.14
145 146 0.387565 GCTCATCGTCCTTCTCTCCC 59.612 60.000 0.00 0.00 0.00 4.30
146 147 0.030101 CGCTCATCGTCCTTCTCTCC 59.970 60.000 0.00 0.00 0.00 3.71
147 148 0.030101 CCGCTCATCGTCCTTCTCTC 59.970 60.000 0.00 0.00 36.19 3.20
148 149 0.681564 ACCGCTCATCGTCCTTCTCT 60.682 55.000 0.00 0.00 36.19 3.10
149 150 0.173708 AACCGCTCATCGTCCTTCTC 59.826 55.000 0.00 0.00 36.19 2.87
150 151 0.108615 CAACCGCTCATCGTCCTTCT 60.109 55.000 0.00 0.00 36.19 2.85
151 152 1.084370 CCAACCGCTCATCGTCCTTC 61.084 60.000 0.00 0.00 36.19 3.46
152 153 1.079127 CCAACCGCTCATCGTCCTT 60.079 57.895 0.00 0.00 36.19 3.36
153 154 1.949847 CTCCAACCGCTCATCGTCCT 61.950 60.000 0.00 0.00 36.19 3.85
154 155 1.519455 CTCCAACCGCTCATCGTCC 60.519 63.158 0.00 0.00 36.19 4.79
155 156 0.108804 TTCTCCAACCGCTCATCGTC 60.109 55.000 0.00 0.00 36.19 4.20
156 157 0.108615 CTTCTCCAACCGCTCATCGT 60.109 55.000 0.00 0.00 36.19 3.73
157 158 0.807667 CCTTCTCCAACCGCTCATCG 60.808 60.000 0.00 0.00 38.08 3.84
158 159 0.537188 TCCTTCTCCAACCGCTCATC 59.463 55.000 0.00 0.00 0.00 2.92
159 160 0.984230 TTCCTTCTCCAACCGCTCAT 59.016 50.000 0.00 0.00 0.00 2.90
160 161 0.034896 GTTCCTTCTCCAACCGCTCA 59.965 55.000 0.00 0.00 0.00 4.26
161 162 0.673956 GGTTCCTTCTCCAACCGCTC 60.674 60.000 0.00 0.00 33.01 5.03
162 163 1.375326 GGTTCCTTCTCCAACCGCT 59.625 57.895 0.00 0.00 33.01 5.52
163 164 1.072505 TGGTTCCTTCTCCAACCGC 59.927 57.895 0.00 0.00 44.53 5.68
164 165 0.605589 GGTGGTTCCTTCTCCAACCG 60.606 60.000 0.00 0.00 44.53 4.44
165 166 0.476771 TGGTGGTTCCTTCTCCAACC 59.523 55.000 0.00 0.00 40.37 3.77
166 167 1.143073 AGTGGTGGTTCCTTCTCCAAC 59.857 52.381 0.00 0.00 41.35 3.77
167 168 1.142870 CAGTGGTGGTTCCTTCTCCAA 59.857 52.381 0.00 0.00 35.38 3.53
168 169 0.764890 CAGTGGTGGTTCCTTCTCCA 59.235 55.000 0.00 0.00 37.07 3.86
169 170 0.606673 GCAGTGGTGGTTCCTTCTCC 60.607 60.000 0.00 0.00 37.07 3.71
170 171 0.951040 CGCAGTGGTGGTTCCTTCTC 60.951 60.000 0.00 0.00 37.07 2.87
171 172 1.071471 CGCAGTGGTGGTTCCTTCT 59.929 57.895 0.00 0.00 37.07 2.85
172 173 2.617274 GCGCAGTGGTGGTTCCTTC 61.617 63.158 0.30 0.00 37.07 3.46
173 174 2.594592 GCGCAGTGGTGGTTCCTT 60.595 61.111 0.30 0.00 37.07 3.36
174 175 3.872603 TGCGCAGTGGTGGTTCCT 61.873 61.111 5.66 0.00 37.07 3.36
175 176 2.725203 TAGTGCGCAGTGGTGGTTCC 62.725 60.000 27.70 3.39 0.00 3.62
176 177 1.291877 CTAGTGCGCAGTGGTGGTTC 61.292 60.000 27.70 4.21 0.00 3.62
177 178 1.301716 CTAGTGCGCAGTGGTGGTT 60.302 57.895 27.70 0.76 0.00 3.67
178 179 1.754380 TTCTAGTGCGCAGTGGTGGT 61.754 55.000 27.70 1.01 0.00 4.16
179 180 1.005037 TTCTAGTGCGCAGTGGTGG 60.005 57.895 27.70 14.12 0.00 4.61
180 181 1.016130 CCTTCTAGTGCGCAGTGGTG 61.016 60.000 27.70 19.45 0.00 4.17
181 182 1.293498 CCTTCTAGTGCGCAGTGGT 59.707 57.895 27.70 7.36 0.00 4.16
182 183 2.103042 GCCTTCTAGTGCGCAGTGG 61.103 63.158 27.70 24.53 0.00 4.00
183 184 1.357258 CTGCCTTCTAGTGCGCAGTG 61.357 60.000 27.70 16.72 42.97 3.66
184 185 1.079543 CTGCCTTCTAGTGCGCAGT 60.080 57.895 23.25 23.25 42.97 4.40
185 186 3.791539 CTGCCTTCTAGTGCGCAG 58.208 61.111 12.22 0.00 42.42 5.18
186 187 1.374631 CACTGCCTTCTAGTGCGCA 60.375 57.895 5.66 5.66 39.09 6.09
187 188 3.479370 CACTGCCTTCTAGTGCGC 58.521 61.111 0.00 0.00 39.09 6.09
190 191 3.479370 GCGCACTGCCTTCTAGTG 58.521 61.111 0.30 0.00 46.37 2.74
221 222 3.052082 CAAGAGCGTGCCCACTGG 61.052 66.667 0.00 0.00 0.00 4.00
222 223 3.052082 CCAAGAGCGTGCCCACTG 61.052 66.667 0.00 0.00 0.00 3.66
223 224 4.335647 CCCAAGAGCGTGCCCACT 62.336 66.667 0.00 0.00 0.00 4.00
226 227 4.344865 TTCCCCAAGAGCGTGCCC 62.345 66.667 0.00 0.00 0.00 5.36
227 228 2.747855 CTTCCCCAAGAGCGTGCC 60.748 66.667 0.00 0.00 0.00 5.01
228 229 2.747855 CCTTCCCCAAGAGCGTGC 60.748 66.667 0.00 0.00 0.00 5.34
229 230 2.747855 GCCTTCCCCAAGAGCGTG 60.748 66.667 0.00 0.00 0.00 5.34
230 231 4.035102 GGCCTTCCCCAAGAGCGT 62.035 66.667 0.00 0.00 30.53 5.07
233 234 4.803908 GGCGGCCTTCCCCAAGAG 62.804 72.222 12.87 0.00 0.00 2.85
241 242 4.704833 TGTGAGCTGGCGGCCTTC 62.705 66.667 21.46 14.99 43.05 3.46
282 283 2.112198 ATAATGTGTGTGGGCGCCG 61.112 57.895 22.54 0.00 0.00 6.46
283 284 1.312371 ACATAATGTGTGTGGGCGCC 61.312 55.000 21.18 21.18 40.28 6.53
284 285 2.179764 ACATAATGTGTGTGGGCGC 58.820 52.632 0.00 0.00 40.28 6.53
295 296 0.880278 CCCTCGCCGGACACATAATG 60.880 60.000 5.05 0.00 33.16 1.90
296 297 1.445942 CCCTCGCCGGACACATAAT 59.554 57.895 5.05 0.00 33.16 1.28
297 298 2.897207 CCCTCGCCGGACACATAA 59.103 61.111 5.05 0.00 33.16 1.90
298 299 3.845259 GCCCTCGCCGGACACATA 61.845 66.667 5.05 0.00 33.16 2.29
314 315 1.296727 GTTCTACGTAATGGCCCAGC 58.703 55.000 0.00 0.00 0.00 4.85
315 316 2.684001 TGTTCTACGTAATGGCCCAG 57.316 50.000 0.00 0.00 0.00 4.45
316 317 2.420827 CCATGTTCTACGTAATGGCCCA 60.421 50.000 10.32 0.00 33.64 5.36
317 318 2.218603 CCATGTTCTACGTAATGGCCC 58.781 52.381 10.32 0.00 33.64 5.80
327 328 0.874607 CCGCCGTAGCCATGTTCTAC 60.875 60.000 10.65 10.65 34.57 2.59
328 329 1.038681 TCCGCCGTAGCCATGTTCTA 61.039 55.000 0.00 0.00 34.57 2.10
329 330 2.186903 CCGCCGTAGCCATGTTCT 59.813 61.111 0.00 0.00 34.57 3.01
330 331 2.171725 GTCCGCCGTAGCCATGTTC 61.172 63.158 0.00 0.00 34.57 3.18
331 332 2.125269 GTCCGCCGTAGCCATGTT 60.125 61.111 0.00 0.00 34.57 2.71
332 333 4.508128 CGTCCGCCGTAGCCATGT 62.508 66.667 0.00 0.00 34.57 3.21
342 343 4.147322 CATGACAACGCGTCCGCC 62.147 66.667 14.44 0.00 44.71 6.13
343 344 4.147322 CCATGACAACGCGTCCGC 62.147 66.667 14.44 5.10 44.71 5.54
344 345 3.487202 CCCATGACAACGCGTCCG 61.487 66.667 14.44 10.01 44.71 4.79
345 346 3.799755 GCCCATGACAACGCGTCC 61.800 66.667 14.44 5.69 44.71 4.79
346 347 4.147322 CGCCCATGACAACGCGTC 62.147 66.667 14.44 0.00 45.61 5.19
349 350 4.101790 CCACGCCCATGACAACGC 62.102 66.667 0.00 0.00 0.00 4.84
350 351 3.430862 CCCACGCCCATGACAACG 61.431 66.667 0.00 0.00 0.00 4.10
351 352 3.747976 GCCCACGCCCATGACAAC 61.748 66.667 0.00 0.00 0.00 3.32
352 353 3.505790 AAGCCCACGCCCATGACAA 62.506 57.895 0.00 0.00 34.57 3.18
353 354 3.965258 AAGCCCACGCCCATGACA 61.965 61.111 0.00 0.00 34.57 3.58
354 355 3.443045 CAAGCCCACGCCCATGAC 61.443 66.667 0.00 0.00 34.57 3.06
355 356 4.738998 CCAAGCCCACGCCCATGA 62.739 66.667 0.00 0.00 34.57 3.07
368 369 2.032528 TCTTCCACCTGCGCCAAG 59.967 61.111 4.18 0.00 0.00 3.61
369 370 2.281484 GTCTTCCACCTGCGCCAA 60.281 61.111 4.18 0.00 0.00 4.52
370 371 3.535629 CTGTCTTCCACCTGCGCCA 62.536 63.158 4.18 0.00 0.00 5.69
371 372 2.743928 CTGTCTTCCACCTGCGCC 60.744 66.667 4.18 0.00 0.00 6.53
372 373 2.527951 ATCCTGTCTTCCACCTGCGC 62.528 60.000 0.00 0.00 0.00 6.09
373 374 0.824109 TATCCTGTCTTCCACCTGCG 59.176 55.000 0.00 0.00 0.00 5.18
374 375 1.139853 CCTATCCTGTCTTCCACCTGC 59.860 57.143 0.00 0.00 0.00 4.85
375 376 2.432510 GACCTATCCTGTCTTCCACCTG 59.567 54.545 0.00 0.00 0.00 4.00
376 377 2.753247 GACCTATCCTGTCTTCCACCT 58.247 52.381 0.00 0.00 0.00 4.00
377 378 1.409427 CGACCTATCCTGTCTTCCACC 59.591 57.143 0.00 0.00 0.00 4.61
378 379 2.359531 CTCGACCTATCCTGTCTTCCAC 59.640 54.545 0.00 0.00 0.00 4.02
379 380 2.241430 TCTCGACCTATCCTGTCTTCCA 59.759 50.000 0.00 0.00 0.00 3.53
380 381 2.882137 CTCTCGACCTATCCTGTCTTCC 59.118 54.545 0.00 0.00 0.00 3.46
381 382 2.292292 GCTCTCGACCTATCCTGTCTTC 59.708 54.545 0.00 0.00 0.00 2.87
382 383 2.303175 GCTCTCGACCTATCCTGTCTT 58.697 52.381 0.00 0.00 0.00 3.01
383 384 1.213182 TGCTCTCGACCTATCCTGTCT 59.787 52.381 0.00 0.00 0.00 3.41
384 385 1.681538 TGCTCTCGACCTATCCTGTC 58.318 55.000 0.00 0.00 0.00 3.51
385 386 1.959985 CATGCTCTCGACCTATCCTGT 59.040 52.381 0.00 0.00 0.00 4.00
386 387 1.336702 GCATGCTCTCGACCTATCCTG 60.337 57.143 11.37 0.00 0.00 3.86
387 388 0.965439 GCATGCTCTCGACCTATCCT 59.035 55.000 11.37 0.00 0.00 3.24
388 389 0.965439 AGCATGCTCTCGACCTATCC 59.035 55.000 16.30 0.00 0.00 2.59
389 390 2.063156 CAGCATGCTCTCGACCTATC 57.937 55.000 19.68 0.00 0.00 2.08
404 405 4.600576 TCTTCGTGCACGGCAGCA 62.601 61.111 36.41 16.48 40.08 4.41
405 406 3.782244 CTCTTCGTGCACGGCAGC 61.782 66.667 36.41 0.00 40.08 5.25
406 407 3.114616 CCTCTTCGTGCACGGCAG 61.115 66.667 36.41 29.96 40.08 4.85
407 408 3.611674 TCCTCTTCGTGCACGGCA 61.612 61.111 36.41 23.08 40.29 5.69
408 409 3.112709 GTCCTCTTCGTGCACGGC 61.113 66.667 36.41 15.30 40.29 5.68
409 410 2.543687 ATCGTCCTCTTCGTGCACGG 62.544 60.000 36.41 22.75 40.29 4.94
410 411 0.732880 AATCGTCCTCTTCGTGCACG 60.733 55.000 32.76 32.76 41.45 5.34
411 412 0.716108 CAATCGTCCTCTTCGTGCAC 59.284 55.000 6.82 6.82 0.00 4.57
412 413 1.014044 GCAATCGTCCTCTTCGTGCA 61.014 55.000 0.00 0.00 33.01 4.57
413 414 1.696832 GGCAATCGTCCTCTTCGTGC 61.697 60.000 0.00 0.00 32.35 5.34
414 415 1.413767 CGGCAATCGTCCTCTTCGTG 61.414 60.000 0.00 0.00 0.00 4.35
415 416 1.153823 CGGCAATCGTCCTCTTCGT 60.154 57.895 0.00 0.00 0.00 3.85
416 417 1.878522 CCGGCAATCGTCCTCTTCG 60.879 63.158 0.00 0.00 37.11 3.79
417 418 2.174319 GCCGGCAATCGTCCTCTTC 61.174 63.158 24.80 0.00 37.11 2.87
418 419 2.125106 GCCGGCAATCGTCCTCTT 60.125 61.111 24.80 0.00 37.11 2.85
419 420 4.514577 CGCCGGCAATCGTCCTCT 62.515 66.667 28.98 0.00 37.11 3.69
420 421 4.508128 TCGCCGGCAATCGTCCTC 62.508 66.667 28.98 0.00 37.11 3.71
421 422 4.814294 GTCGCCGGCAATCGTCCT 62.814 66.667 28.98 0.00 37.11 3.85
423 424 2.461110 AATGTCGCCGGCAATCGTC 61.461 57.895 28.98 8.33 37.11 4.20
424 425 2.435938 AATGTCGCCGGCAATCGT 60.436 55.556 28.98 14.05 37.11 3.73
425 426 1.425267 TACAATGTCGCCGGCAATCG 61.425 55.000 28.98 10.38 38.88 3.34
426 427 0.304705 CTACAATGTCGCCGGCAATC 59.695 55.000 28.98 16.05 0.00 2.67
427 428 0.107897 TCTACAATGTCGCCGGCAAT 60.108 50.000 28.98 14.05 0.00 3.56
428 429 0.739462 CTCTACAATGTCGCCGGCAA 60.739 55.000 28.98 4.39 0.00 4.52
429 430 1.153647 CTCTACAATGTCGCCGGCA 60.154 57.895 28.98 11.20 0.00 5.69
430 431 0.249489 ATCTCTACAATGTCGCCGGC 60.249 55.000 19.07 19.07 0.00 6.13
431 432 2.552743 TCTATCTCTACAATGTCGCCGG 59.447 50.000 0.00 0.00 0.00 6.13
432 433 3.498777 TCTCTATCTCTACAATGTCGCCG 59.501 47.826 0.00 0.00 0.00 6.46
433 434 4.757657 TCTCTCTATCTCTACAATGTCGCC 59.242 45.833 0.00 0.00 0.00 5.54
434 435 5.106712 CCTCTCTCTATCTCTACAATGTCGC 60.107 48.000 0.00 0.00 0.00 5.19
435 436 6.227522 TCCTCTCTCTATCTCTACAATGTCG 58.772 44.000 0.00 0.00 0.00 4.35
436 437 8.458573 TTTCCTCTCTCTATCTCTACAATGTC 57.541 38.462 0.00 0.00 0.00 3.06
437 438 8.830915 TTTTCCTCTCTCTATCTCTACAATGT 57.169 34.615 0.00 0.00 0.00 2.71
438 439 8.912988 ACTTTTCCTCTCTCTATCTCTACAATG 58.087 37.037 0.00 0.00 0.00 2.82
440 441 9.621629 CTACTTTTCCTCTCTCTATCTCTACAA 57.378 37.037 0.00 0.00 0.00 2.41
441 442 8.215050 CCTACTTTTCCTCTCTCTATCTCTACA 58.785 40.741 0.00 0.00 0.00 2.74
442 443 8.434392 TCCTACTTTTCCTCTCTCTATCTCTAC 58.566 40.741 0.00 0.00 0.00 2.59
443 444 8.570038 TCCTACTTTTCCTCTCTCTATCTCTA 57.430 38.462 0.00 0.00 0.00 2.43
444 445 7.460214 TCCTACTTTTCCTCTCTCTATCTCT 57.540 40.000 0.00 0.00 0.00 3.10
445 446 7.013942 GGTTCCTACTTTTCCTCTCTCTATCTC 59.986 44.444 0.00 0.00 0.00 2.75
446 447 6.837048 GGTTCCTACTTTTCCTCTCTCTATCT 59.163 42.308 0.00 0.00 0.00 1.98
447 448 6.837048 AGGTTCCTACTTTTCCTCTCTCTATC 59.163 42.308 0.00 0.00 0.00 2.08
448 449 6.747931 AGGTTCCTACTTTTCCTCTCTCTAT 58.252 40.000 0.00 0.00 0.00 1.98
449 450 6.155247 AGGTTCCTACTTTTCCTCTCTCTA 57.845 41.667 0.00 0.00 0.00 2.43
450 451 5.018374 AGGTTCCTACTTTTCCTCTCTCT 57.982 43.478 0.00 0.00 0.00 3.10
451 452 5.246429 TCAAGGTTCCTACTTTTCCTCTCTC 59.754 44.000 0.00 0.00 0.00 3.20
452 453 5.155905 TCAAGGTTCCTACTTTTCCTCTCT 58.844 41.667 0.00 0.00 0.00 3.10
453 454 5.485209 TCAAGGTTCCTACTTTTCCTCTC 57.515 43.478 0.00 0.00 0.00 3.20
454 455 5.804771 GCATCAAGGTTCCTACTTTTCCTCT 60.805 44.000 0.00 0.00 0.00 3.69
455 456 4.396478 GCATCAAGGTTCCTACTTTTCCTC 59.604 45.833 0.00 0.00 0.00 3.71
456 457 4.202567 TGCATCAAGGTTCCTACTTTTCCT 60.203 41.667 0.00 0.00 0.00 3.36
457 458 4.079253 TGCATCAAGGTTCCTACTTTTCC 58.921 43.478 0.00 0.00 0.00 3.13
458 459 5.705609 TTGCATCAAGGTTCCTACTTTTC 57.294 39.130 0.00 0.00 0.00 2.29
459 460 6.323739 TCTTTTGCATCAAGGTTCCTACTTTT 59.676 34.615 6.37 0.00 0.00 2.27
460 461 5.833131 TCTTTTGCATCAAGGTTCCTACTTT 59.167 36.000 6.37 0.00 0.00 2.66
461 462 5.385198 TCTTTTGCATCAAGGTTCCTACTT 58.615 37.500 6.37 0.00 0.00 2.24
462 463 4.985538 TCTTTTGCATCAAGGTTCCTACT 58.014 39.130 6.37 0.00 0.00 2.57
463 464 5.241728 ACTTCTTTTGCATCAAGGTTCCTAC 59.758 40.000 6.37 0.00 0.00 3.18
464 465 5.241506 CACTTCTTTTGCATCAAGGTTCCTA 59.758 40.000 6.37 0.00 0.00 2.94
465 466 4.038402 CACTTCTTTTGCATCAAGGTTCCT 59.962 41.667 6.37 0.00 0.00 3.36
466 467 4.202151 ACACTTCTTTTGCATCAAGGTTCC 60.202 41.667 6.37 0.00 0.00 3.62
467 468 4.936891 ACACTTCTTTTGCATCAAGGTTC 58.063 39.130 6.37 0.00 0.00 3.62
468 469 4.202151 GGACACTTCTTTTGCATCAAGGTT 60.202 41.667 6.37 0.00 0.00 3.50
469 470 3.319122 GGACACTTCTTTTGCATCAAGGT 59.681 43.478 6.37 0.00 0.00 3.50
470 471 3.318839 TGGACACTTCTTTTGCATCAAGG 59.681 43.478 6.37 0.00 0.00 3.61
471 472 4.572985 TGGACACTTCTTTTGCATCAAG 57.427 40.909 0.00 0.00 0.00 3.02
472 473 4.341806 ACATGGACACTTCTTTTGCATCAA 59.658 37.500 0.00 0.00 0.00 2.57
473 474 3.890756 ACATGGACACTTCTTTTGCATCA 59.109 39.130 0.00 0.00 0.00 3.07
474 475 4.232221 CACATGGACACTTCTTTTGCATC 58.768 43.478 0.00 0.00 0.00 3.91
475 476 3.553508 GCACATGGACACTTCTTTTGCAT 60.554 43.478 0.00 0.00 0.00 3.96
476 477 2.223782 GCACATGGACACTTCTTTTGCA 60.224 45.455 0.00 0.00 0.00 4.08
477 478 2.397549 GCACATGGACACTTCTTTTGC 58.602 47.619 0.00 0.00 0.00 3.68
478 479 2.624838 AGGCACATGGACACTTCTTTTG 59.375 45.455 0.00 0.00 0.00 2.44
479 480 2.949447 AGGCACATGGACACTTCTTTT 58.051 42.857 0.00 0.00 0.00 2.27
480 481 2.664402 AGGCACATGGACACTTCTTT 57.336 45.000 0.00 0.00 0.00 2.52
481 482 2.664402 AAGGCACATGGACACTTCTT 57.336 45.000 0.00 0.00 0.00 2.52
482 483 2.664402 AAAGGCACATGGACACTTCT 57.336 45.000 0.00 0.00 0.00 2.85
483 484 3.733443 AAAAAGGCACATGGACACTTC 57.267 42.857 0.00 0.00 0.00 3.01
504 505 0.179070 GGGAGCCGGTTTTGCAAAAA 60.179 50.000 25.40 7.97 0.00 1.94
505 506 1.443828 GGGAGCCGGTTTTGCAAAA 59.556 52.632 20.46 20.46 0.00 2.44
506 507 2.851071 CGGGAGCCGGTTTTGCAAA 61.851 57.895 8.05 8.05 44.15 3.68
507 508 3.291383 CGGGAGCCGGTTTTGCAA 61.291 61.111 1.90 0.00 44.15 4.08
523 524 0.447011 GGTATAGATCCCGCTCGTCG 59.553 60.000 0.00 0.00 38.08 5.12
524 525 1.469308 CAGGTATAGATCCCGCTCGTC 59.531 57.143 0.00 0.00 0.00 4.20
525 526 1.202903 ACAGGTATAGATCCCGCTCGT 60.203 52.381 0.00 0.00 0.00 4.18
526 527 1.200252 CACAGGTATAGATCCCGCTCG 59.800 57.143 0.00 0.00 0.00 5.03
527 528 2.229302 GACACAGGTATAGATCCCGCTC 59.771 54.545 0.00 0.00 0.00 5.03
528 529 2.240279 GACACAGGTATAGATCCCGCT 58.760 52.381 0.00 0.00 0.00 5.52
529 530 1.961394 TGACACAGGTATAGATCCCGC 59.039 52.381 0.00 0.00 0.00 6.13
530 531 4.665833 TTTGACACAGGTATAGATCCCG 57.334 45.455 0.00 0.00 0.00 5.14
531 532 5.239525 GCATTTTGACACAGGTATAGATCCC 59.760 44.000 0.00 0.00 0.00 3.85
532 533 6.058183 AGCATTTTGACACAGGTATAGATCC 58.942 40.000 0.00 0.00 0.00 3.36
533 534 6.989169 AGAGCATTTTGACACAGGTATAGATC 59.011 38.462 0.00 0.00 0.00 2.75
534 535 6.893583 AGAGCATTTTGACACAGGTATAGAT 58.106 36.000 0.00 0.00 0.00 1.98
535 536 6.299805 AGAGCATTTTGACACAGGTATAGA 57.700 37.500 0.00 0.00 0.00 1.98
536 537 8.668510 ATTAGAGCATTTTGACACAGGTATAG 57.331 34.615 0.00 0.00 0.00 1.31
537 538 7.715249 GGATTAGAGCATTTTGACACAGGTATA 59.285 37.037 0.00 0.00 0.00 1.47
538 539 6.543831 GGATTAGAGCATTTTGACACAGGTAT 59.456 38.462 0.00 0.00 0.00 2.73
539 540 5.880332 GGATTAGAGCATTTTGACACAGGTA 59.120 40.000 0.00 0.00 0.00 3.08
540 541 4.702131 GGATTAGAGCATTTTGACACAGGT 59.298 41.667 0.00 0.00 0.00 4.00
541 542 4.201851 CGGATTAGAGCATTTTGACACAGG 60.202 45.833 0.00 0.00 0.00 4.00
542 543 4.728882 GCGGATTAGAGCATTTTGACACAG 60.729 45.833 0.00 0.00 0.00 3.66
543 544 3.126858 GCGGATTAGAGCATTTTGACACA 59.873 43.478 0.00 0.00 0.00 3.72
544 545 3.487544 GGCGGATTAGAGCATTTTGACAC 60.488 47.826 0.00 0.00 34.54 3.67
545 546 2.682856 GGCGGATTAGAGCATTTTGACA 59.317 45.455 0.00 0.00 34.54 3.58
546 547 2.286418 CGGCGGATTAGAGCATTTTGAC 60.286 50.000 0.00 0.00 34.54 3.18
564 565 3.889196 TTGTGTGAACAACTAATCGGC 57.111 42.857 0.00 0.00 0.00 5.54
570 571 7.594714 TGTTAAGCTTTTTGTGTGAACAACTA 58.405 30.769 3.20 0.00 0.00 2.24
571 572 6.451393 TGTTAAGCTTTTTGTGTGAACAACT 58.549 32.000 3.20 0.00 0.00 3.16
574 575 7.913297 GTCTATGTTAAGCTTTTTGTGTGAACA 59.087 33.333 3.20 6.96 0.00 3.18
575 576 7.111593 CGTCTATGTTAAGCTTTTTGTGTGAAC 59.888 37.037 3.20 0.42 0.00 3.18
576 577 7.129622 CGTCTATGTTAAGCTTTTTGTGTGAA 58.870 34.615 3.20 0.00 0.00 3.18
578 579 6.356977 CACGTCTATGTTAAGCTTTTTGTGTG 59.643 38.462 3.20 0.00 0.00 3.82
584 585 7.328737 AGATACCACGTCTATGTTAAGCTTTT 58.671 34.615 3.20 0.00 0.00 2.27
588 589 7.399523 CAAAAGATACCACGTCTATGTTAAGC 58.600 38.462 0.00 0.00 0.00 3.09
589 590 7.399523 GCAAAAGATACCACGTCTATGTTAAG 58.600 38.462 0.00 0.00 0.00 1.85
595 596 4.481368 TGGCAAAAGATACCACGTCTAT 57.519 40.909 0.00 0.00 0.00 1.98
635 636 8.344446 AGTAGGTTTGTAGAAAACACACTTTT 57.656 30.769 2.93 0.00 38.57 2.27
636 637 7.933215 AGTAGGTTTGTAGAAAACACACTTT 57.067 32.000 2.93 0.00 38.57 2.66
651 652 5.684626 CGCCGAGTAAATACTAGTAGGTTTG 59.315 44.000 8.85 0.00 36.50 2.93
652 653 5.221126 CCGCCGAGTAAATACTAGTAGGTTT 60.221 44.000 8.85 7.60 36.50 3.27
654 655 3.817647 CCGCCGAGTAAATACTAGTAGGT 59.182 47.826 8.85 1.29 36.50 3.08
655 656 3.817647 ACCGCCGAGTAAATACTAGTAGG 59.182 47.826 8.85 3.44 36.50 3.18
656 657 4.512944 TCACCGCCGAGTAAATACTAGTAG 59.487 45.833 8.85 0.00 36.50 2.57
657 658 4.273480 GTCACCGCCGAGTAAATACTAGTA 59.727 45.833 4.77 4.77 36.50 1.82
658 659 3.065925 GTCACCGCCGAGTAAATACTAGT 59.934 47.826 0.00 0.00 36.50 2.57
663 664 1.184431 TGGTCACCGCCGAGTAAATA 58.816 50.000 0.00 0.00 0.00 1.40
664 665 0.322322 TTGGTCACCGCCGAGTAAAT 59.678 50.000 0.00 0.00 0.00 1.40
665 666 0.600782 GTTGGTCACCGCCGAGTAAA 60.601 55.000 0.00 0.00 0.00 2.01
667 668 2.652530 GTTGGTCACCGCCGAGTA 59.347 61.111 0.00 0.00 0.00 2.59
673 674 2.171725 GGCTATCGTTGGTCACCGC 61.172 63.158 0.00 0.00 0.00 5.68
847 856 2.827383 GATGGCGAGCGGAGATAGGC 62.827 65.000 0.00 0.00 45.23 3.93
848 857 1.214062 GATGGCGAGCGGAGATAGG 59.786 63.158 0.00 0.00 0.00 2.57
910 919 4.435651 GCCAGCAAAAGTATGTAAGTCGAC 60.436 45.833 7.70 7.70 0.00 4.20
1266 1291 2.295349 AGTGTACTGACGTACCTTGGTG 59.705 50.000 2.03 0.00 44.27 4.17
1294 1319 1.725641 TGCCTTCACAACGATGCTAG 58.274 50.000 0.00 0.00 0.00 3.42
1303 1328 0.537143 AGCCACGATTGCCTTCACAA 60.537 50.000 0.00 0.00 0.00 3.33
1461 1520 8.644619 CATTCATCATTATTTGGCAATCGAATC 58.355 33.333 0.00 0.00 32.07 2.52
1470 1534 2.733026 GCGCCATTCATCATTATTTGGC 59.267 45.455 0.00 1.70 44.78 4.52
1764 1828 8.103924 GCAAGAATACAATCATTTTAAGCAACG 58.896 33.333 0.00 0.00 0.00 4.10
1860 1924 4.433186 TGTCTTTGTGAACCTTGTTGTG 57.567 40.909 0.00 0.00 0.00 3.33
1861 1925 6.016276 GGATATGTCTTTGTGAACCTTGTTGT 60.016 38.462 0.00 0.00 0.00 3.32
1862 1926 6.016360 TGGATATGTCTTTGTGAACCTTGTTG 60.016 38.462 0.00 0.00 0.00 3.33
1982 2068 0.754472 GGTGTGGTTAGCCGCCTATA 59.246 55.000 6.71 0.00 44.42 1.31
2044 2130 4.994852 TGAGATACTTGGTGGAAGTTTTCG 59.005 41.667 0.00 0.00 42.70 3.46
2113 2199 2.186384 CTGCTCAGGCGGGAGAAG 59.814 66.667 12.48 7.92 40.90 2.85
2129 2215 0.764752 CGGGAAGGGAAGGGATAGCT 60.765 60.000 0.00 0.00 0.00 3.32
2143 2229 1.679977 CGAGTAGGGGTGACGGGAA 60.680 63.158 0.00 0.00 0.00 3.97
2146 2232 3.834799 GGCGAGTAGGGGTGACGG 61.835 72.222 0.00 0.00 0.00 4.79
2372 2458 1.078710 AGTAGGAGGGCGGTCAACT 59.921 57.895 0.00 0.00 0.00 3.16
2411 2497 2.370189 AGCAGTTGTCTACTTCCTTGCT 59.630 45.455 0.00 0.00 33.85 3.91
2520 2606 1.445410 TTCTTCGCCACGTCATCGG 60.445 57.895 0.00 0.00 41.85 4.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.