>input_sequence_74316
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----------------------------------------------------------------ATGGCAAGCACCAACA
TGGCGTCGGCCACCTCCAGATTCATGCTGGCGGCGGGCATCCCCAGCGGCACCAACGGCGGCGTGAGCAGCCGCGTCAGC
TTCGTCCCCTCCAACCGGCTGGGCTTGAAGCTCGTGGCCCGCGCCGAGGAGGAGCCGACTGCCGCCGCGCCGGCGGAGCC
AGCACCGGCCGCGGAGGAGAAACCGGAAGGCGCCGTGGCCACCAAAGAGCCCGCCAAAGCCAAGCCGCCGCCGAGGGGAC
CCAAGAGGGGCACCAAGGTACGTCAGTACACTCCTTTGCTAGCATCGTTGTGAA--------GGCAATCGTGGCTCAACT
CTTGCCTGAAATGAAA--TGATCAGGTGAAGATTCTGAGGAGGGAGTCCTACTGGTACAACGGGACCGGATCCGTCGTCA
CGGTTGATCAGGTAACCAA-----------------ATCTTCACTTC-------TTGCAATGGAATGCTTCTGTTAGTGG
-----ATTCGATTGCCAAATAATGATGAATGGCGCGTGTGTAGGATCCCAACACCCGTTACCCGGTGGTGGTGCGTTTCG
CCAAGGTGAACTACGCCGGCGTGTCGACCAACAACTACGCCCTGGACGAGATCAAGGAGGTTGCTGCTTAA---------
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>chr5D_1_TraesCS5D01G496400
GATTGCGGAGTGCTTGGCACCGCACAGGCATGTGCCATTGGAGCCGCGCGGGGTGGGGGACAGATGTGAGGTTCGGGCGA
ATGGCACGCCAATGCCGGCCTTAGGGTGCCGAGGTGATGTTCTGGTGTCAGCGGCTGAAAGACACGGGAGAGAAGGACGA
TGAGCGGTTGGAGAAGGAACCACCACTGCGCACTAGAAGGCAGTGCGCCGTCCTGCCCATGCCAGTGGGCACGCTCTTGG
GGAAGGCCGCCAGCTCACACGTGGGCGCCCCGCCGCAGACCGCGGCGCCCACACACATTATGTGTCCGGCGAGGGCTGGG
CCATTACGTAGAACATGGCTACGGCGGACGCGTTGTCATGGGCGTGGGCTTGGCGCAGGTGGAAGACAGGATAGGTCGAG
AGCATGCTGCCGTGCACGAAGAGGACGATTGCCGGCGACATTGTAGAGATAGAGAGAGGAAAAGTAGGAACCTTGATGCA
AAAGAAGTGTCCATGTGCCTTTTTTTTTTGCAAAACCGGCTCCCGACGAGCGGGATCTATACCTGTGTCAAAATGCTCTA
ATCCGCCGATTAGTTGTTCACACAAAAAGCTTAACATAGACGTGGTATCTTTTGCCAATTTTTTTTTTTTTTTGTAAAAG
TGTGTTTTCTACAAACCTACTAGTATTTACTCGGCGGTG--------ACCAACGATAGCCGAAATAAACCAAGATTGCAA
TCTGTGTATGTGGGCGAGCAAGCAAGTCCATCGCATGGATGGGAGGTTATCCACATGGGAGGATAAGATACGCCATGTGG
CGGCACCGCAGTGGCCGGCACAAATCACCCACTTGGCTGGAGATAGATGATCCGCGCCTATCTCCGCTCGCCATCCCGAC
CAAGGCCGTTTGCACCTTATTTCGCCTTACACCTCACCGTCGACTTACATACTTTTGCT----GGCCGGAGCCACACGAC
CACAAGGAAGGAGCTAAGCTAGCACCGACAAACAACACTTGCT------------GCCGTCCCGATGGCAAGCACCAACA
TGGCGTCGGCCACCTCCAGATTCATGCTGGCGGCGGGCATCCCCAGCGGCACCAACGGCGGCGTGAGCAGCCGCGTCAGC
TTCGTCCCCTCCAACCGGCTGGGCTTGAAGCTCGTGGCCCGCGCCGAGGAGGAGCCGACTGCCGCCGCGCCGGCGGAGCC
AGCACCGGCCGCGGAGGAGAAACCGGAAGGCGCCGTGGCCACCAAAGAGCCCGCCAAAGCCAAGCCGCCGCCGAGGGGAC
CCAAGAGGGGCACCAAGGTACGTCAGTACACTCCTTTGCTAGCATCGTTGTGAA--------GGCAATCGTGGCTCAACT
CTTGCCTGAAATGAAA--TGATCAGGTGAAGATTCTGAGGAGGGAGTCCTACTGGTACAACGGGACCGGATCCGTCGTCA
CGGTTGATCAGGTAACCAA-----------------ATCTTCACTTC-------TTGCAATGGAATGCTTCTGTTAGTGG
-----ATTCGATTGCCAAATAATGATGAATGGCGCGTGTGTAGGATCCCAACACCCGTTACCCGGTGGTGGTGCGTTTCG
CCAAGGTGAACTACGCCGGCGTGTCGACCAACAACTACGCCCTGGACGAGATCAAGGAGGTTGCTGCTTAAGCGAACGAG
GCTAAGCTGCCGTGTGCTCCATCCAATGTTTGTATCAGTAGCTCGTCAAGTGACGATGTGAATGTTAGCCTCTCACAAAC
CTTATGTGTAATACCTCTGCGATTATATGTATTTGCCTGCTTCCTCATGGACCTAATAATCTCCTCCCGTTGCTTAAAAT
GATTGTATTCTTGCTCACTTTTGTACAAAAGATCGGTTGTTCATGTTGCCGGAAGGCTACACAGAGCAATACAGCATGGA
CAGCACAACAA---GGTTCACAAAGACATATCCAGTCGATTACTGATTTCCTTTTAGTCAAGATTGGACATTATTGATCA
AATCGATTACATCTCTAACCCACCCCCTACGATCCTTTAGTGGAGG-------------------ATTATAGGCGGCTAA
CCACACCTAGCCGAACTCGCAAAGCGTTAGTGGATTATCCTCCTTGGCCCGAAAACTTCCACCAAGTATCTCAAATATAC
TCGGCCGAGGCCACGCGGAGTAAAATTTTCTTTCCCCCCTTCTCCCGCCTGAGCAGCTATCCCTTCCCTTCCCGTCACCC
CTACTCGCCGCAGACACCACCAATGCCCCCGATTCCGGATGGGATGGAGAGGCAAGACCCTTCCGCCACCGCCACCGGCG
CTTCACTGCCGAAAACGACCCCGCGCCGCCGCCCGCACCAAAAAAGAGGTTGGGCACCAAAACCTCCTCAGGGCCACCTC
ACCGGCAACCACCGCCGGTAGCAAGGTCGGTGGCAAGGCTGTTGCATCTCCGGCGACAGTTGACCGCCCTCCTACTGCTC
CAGCCATCGGCAAGCGAGCAAGGAAGTAGACAACTGCTACGTCTACGGTGACGGTAGGCCGCCCTCCCGCTGCTCCAGCC
GCGGCAAGAGGGCAAGGAAGCAGACGACAACTGTGTCGGCGCTCGCCGATGACGTGGCGAAGAA------CAAGAAGGTG
TCTTCGG--TGCCTCGTCCTCGTCCGGTGCCATGGACCCCGTCTACGGACACCGCTACGGC
>chr5B_548
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-------------------------------------------------------------------TCAAAACGCTCTA
ATCCACCGATCGGTGTCTTACACACAAAAATTAACGTAGACGTAGTGTCTTTTGACAGAA---------TTTTGTGGAAG
TGTGTTTTCTAGTACAAACCTAGCCCTCATACAATTAACTCGCAGTAACCAACGATAGCCGAAATAAACCAAGATTGCAA
TCTGTGTATGTGGGCGAGCAAGCAAGTCCATCGCATGGATGGGAGGTTATCCACATGGGAGGATAAGATACGCCATGTGG
CGTCACCGCAGTGGCCGGCACAAATCACCCACTTGGCTGGAGATAGATAATCCGC--CTATCTCCGCTCGCCATCCCGGC
CAAGGCCGTTTGCACCTTATTTCGCCTTACACCTCACCATCGACTTACATACTTCTGTT----GGCCGGAGCCACACGAG
CTAGC---------------ACCACCGACAAACAATACCTTGCTGTTCTGAGCTCGCCGTCCCGATGGCAAGCACCAACA
TGGCGTCGGCCACCTCCAGATTCATGCTGGCGGCGGGCATCCCCAGCGGCTCCAACGGCGGCGTGGGCAGCCGCGTCAGC
TTCGTCCCGTCCAACCGGCTCGGCTGGAAGCTCGTGGCCCGCGCCGAGGAGGAGCCGACTGCCGCCGCACCGGCGGAACC
AGCACCGGCCGCGGAGGAGAAACCGGAAGCCGCCGTGGCCACCAAAGAGCCCGCCAAAGCCAAGCCGCCGCCAAGGGGAC
CCAAGAGGGGAACCAAGGTCAGTGCAAATTTCTCTGCAATCTAATAGCATGAGTAACCATTT-------GTGGCTCAACT
TTTGCCTGAAATGAAC--TGATCAGGTGAAGATTCTGAGGAGGGAGTCCTACTGGTACAACGGGACCGGATCCGTCGTCA
CGGTTGATCAGGTAACCAACGGCTTTGTCCCCTTCAATCTTCACTTATTGCAAATTGCAATGGAATGCTTCTGTTAGTG-
----AATTCGATTACCAAACAATGATGAATGGCGC--GTGTAGGATCCCAACACCCGTTACCCGGTGGTGGTGCGTTTCG
CCAAGGTGAACTACGCCGGCGTGTCGACCAACAACTACGCCCTGGACGAGATCAAGGAGGTTGCTGCTTAAGCGAACGAG
GCT-AGCTGCCATGTGCTCCATCCAATGTTTGTATCAGTAGCTCGTCGAGTGACGATGTGAATGTTAGCCTCTCACAAAC
CTTATGTGTAATACCTCTGCGATTATATGTATTTGCCTGCTTCCTCATGGACCTAATAATCTCCTTCTGTTGCTTAAAAT
GATTGTATTCTTGCTCACTTTTGTACAAAAGATCGGTTGTTCATGTTACCGGAAGGCTACACAGAGCAATACAGCATGGA
CAG---AACAA---GGTTCACAAAGACATATCCAGTCGATTACTGATTTCTTTTTAGTCACGATTGGACATTATTGATCA
AATCGATTACATCTCTAACCCACCCCCTACGATCCTTTAGTGGAGGTGCAATCCTTTAGTGGAGGATAATAGGCGGCTAA
CCACACCTAGCCAAACTCGCAAAGCGTTAGTGGATTATCCTCCTTGGCCTGAAAACTTCGGCCAAGTATCTCAAATATAC
TCGGCCGAGGCCACGGGGAGTAAACTTTTCTTTCCCCCTTTCTCCCGCCTAAGCGGCTATCCCTTCCCGTCACGTCACCC
CTACTCGCCGCAGACACCACCAATGTCCCTGATTATGGATGGGATGGAGAGGCAAGACCCTTCCGCCACCACCACCGGCG
CTTCACTGCGAAAACAACCCCAGCGCCGCCGCCCGCACCAAAAAAGAGGTTGGGCACCAAAACCTCCTCAGGGTCACCTT
ACCGGCAACCACCGCTGGTAGCAAGGTCGATGGCAAGGTTGTTGCATCTTCGACGACGGTTGACCGCCCTCATACTGCTC
CAGCCATCGGCAAGCGGGCAAGGAAGCAGACAACGGCTACATCTCCGGTGACGGCAGGCCGCCCTCCCGCTGCTCCAGCT
ACGGCAAGAGGGCAAAGAAGTAGACAACAACTGTGTTGGCGCTCGTTGATGACGTGGCGAAGAAGAACAACAAGAAGGTA
TCTTCGATATGCCTCGTCCTCGTCTGGTGCCATGGACCCCGTCTCTGGCCACCGCTACAGC
>chr5A_669
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----------------------------ACTCGACGGTG--------ACCAACGATAGCCGAAATGAACCAAGATTGCAA
TCTGTGTATGTGGGCGAGCAAGCGAGTGCATCGCATGGATGGGAGGTTATCCACATGGGAGGATAAGATATGCCATGCGG
CGGCACCGCAGTGGCCGGCACAAATCACCCACTTGGCTGGAGATAGATGATCCGC--CTATCTCCGCTCGCCATCCCGAC
CAGGGCCGGTTGCACCTTATTTCGCCTTACACCTCGCCATCGACTCACATACTTTTGCTGGCCGGCCGGAGCCACACGAC
CACAAGGAAGGAGCTAAGCTAGCACCGACAAACAGCCCTTGCT------------GCCGTCCCGATGGCAAGCACCAACA
TGGCGTCGGCCACCTCCAGATTCATGCTGGCGGCGGGCATCCCCAGCGGCACCAACGGCGGCGTGAGCAGCCGCGTCAGC
TTCGTCCCCTCCAACCGACTGGGCTTGAAGCTCGTGGCCCGCGCCGAGGAGGAGCCCACTGCCGCCGCGCCGGCGGAACC
AGCACCGGCCGCGGAGGAGAAACCGGACGCCGCCGTGGCCACCAAGGAGCCCGCCAAAGCCAAGCCGCCGCCGAGGGGAC
CCAAGAGGGGAACCAAGGTACGTCAGTACACTCCATTGTTAGCATCTCTGTGAAGCGGCTGGGGCAATCGTGGCTCAACT
CTTGCCTGAAATGAAATATGATCAGGTGAAGATTCTGAGGAGGGAGTCCTACTGGTACAACGGGACCGGATCCGTCGTCA
CGGTTGATCAGGTAACCAACGGGCTTGTCCCCTCCAATCTTCACTTCTTGCAAA-TGCAATGGAATGCTTCTGTTAGTGT
AGTGAACTCGATCACCAAATACTGATGGATGGCGC--GTGTAGGATCCCAACACCCGTTACCCGGTGGTGGTGCGTTTCG
CCAAGGTGAACTACGCCGGCGTGTCGACCAACAACTACGCCCTGGACGAGATCAAGGAGGTTGCTGCTTAAACGATCGAA
GCTGCCG---CGTGTGCTCCATCCAATGTTTGTATCAGTAGCTCGTCAAGTGACGATGTGAATGTTAGCCTCTCACAAAC
CTTATGTGTAATACCTCTGCGATTATATGTATTTGCCTGCTTCCTCATGGACCTAATAATCTCCTCCTGTTGCTTAAGAT
GATTGCATTCTTGCTCACTTTTGTACAAAAGATCGGTTGTTCATGTTACCGGAAGGCTACACAGAGCAATACAGCATGCA
CAG---AACAACAAGGTTCACAAAGACATATCCAGTCGATTATTGATTTCTTTTTAGTCAAGATTGGACATTATTGATCA
AATCGGTTACATCTCTAACGGATCCCCTACGATCCTTTAGTGGAGGTGCAATCCTTTAGTGGACGACAA-----------
---------------------------------ATTATCCTCCTCGGCCTGAAAACTTCGGCCAAGTATCTCAAATATAC
TCGACCGAGGCCGGGCGGAGTAAAATTTTCTTTTACCCTTTCTCCCGCCCGAGCGGCTATCCTGTCGTCGTTTC---CCC
CTACTCGCCGCAGCACCCACCAATGCCCTCGATTCCGGATGGGATGGAGAGGCAAGATCCTTCCGCCACCGCCACCGGGG
CTTCACTGCCGAAAACGACCCCGCGCCGCCGCCCGCACCAAAAAAGAGGTTGGGCACCAAAACCTCCTCAGGGCCACCTC
ACCGGCAACCACCGCCGGTAGCAAGGTCGGTGGCAAGGCTGTTGCATCTTCGACG---GTTCACCGCCCTCCTACTGCTC
TAGCCATCGGTAAGCGGGCAAGGAAGTAGACAACCGCTATGTCTCCGGTGACGGCAGGCCGCCCTCCCACTGCTCCAGCC
GCGGCAAGAGGGCAAGGAAGCAGACGACAA-TGTGTCGGCACTCGTCGATGACGTGGCGAAGAAGAAGAACAAGAAGGTG
CCTTCGG--TGCCTCGCCCTCGTCCGGTGCCATGGACCCCGTCTCAGGCCACCGCTACGGC
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS------S------
----S-----SS--SSS-S-----S---SS-----S-------S--S-------S--SSSSSSSSSSSS------SS---
-----------SS-SSSSS----SSS-S-----S----------------------------------------------
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-------------------------------------------------------SS-----------------------
--------------------------------------S-----------------------------------------
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-----------------------------------------------------------------------------S--
-----------------------------S--------------------------------------------------
----------S---------------------------S--------S--------------------------------
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-------------------------------------------------------------------------------S
-------------S---------------------SS-------------------------------------------
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---S----------------------------------------------------------------------------
-------------------------------------------------------------------S------------
-----------------------------------------------S--------------------------------
---SSS--------------------------------------------S-----------------------------
-------------------------------------------------------------------S------------
------------S------------------------------------S---------SS-------------------
--------------------------------------S---------------S-------------S--S--------
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-------------------------------------------------S--S----S----------------------
----------------S-----------------S---------S---------S-------------------------
---------------------------------------------S----------------------------------
--------------------------------------------SS--S------------
>forward_167
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-------------------------------------------------------------------GAGAGAAGGACGA
TGAGCGG-------------------------------------------------------------------------
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>reverse_1328
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-----------------------------------------------TTGTGAAGGCAATCGTGGCT-------------
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>forward_410
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----------------------------------------------------------------------ATAGGTCGAG
AGCATGCTGC----------------------------------------------------------------------
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>reverse_2068
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-------------------------------------------------------------------TATAGGCGGCTAA
CCACACC-------------------------------------------------------------------------
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