Multiple sequence alignment - TraesCS5D01G494700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G494700 chr5D 100.000 2264 0 0 1 2264 526569256 526566993 0.000000e+00 4181.0
1 TraesCS5D01G494700 chr5D 88.380 284 29 2 1974 2254 526408684 526408402 2.790000e-89 339.0
2 TraesCS5D01G494700 chr5D 80.845 355 30 14 457 780 486761439 486761092 6.250000e-61 244.0
3 TraesCS5D01G494700 chr5D 94.340 53 2 1 1883 1934 408976701 408976753 1.860000e-11 80.5
4 TraesCS5D01G494700 chr5A 93.651 945 36 8 962 1902 653713823 653712899 0.000000e+00 1391.0
5 TraesCS5D01G494700 chr5A 96.321 299 9 1 1968 2264 653712889 653712591 7.270000e-135 490.0
6 TraesCS5D01G494700 chr5A 87.755 294 32 2 1974 2264 653472684 653472392 7.740000e-90 340.0
7 TraesCS5D01G494700 chr5B 93.111 929 43 6 962 1882 662031757 662030842 0.000000e+00 1341.0
8 TraesCS5D01G494700 chr5B 96.805 313 10 0 1952 2264 662030827 662030515 7.160000e-145 523.0
9 TraesCS5D01G494700 chr5B 87.755 294 32 2 1974 2264 661519089 661518797 7.740000e-90 340.0
10 TraesCS5D01G494700 chr5B 85.874 269 15 12 17 276 662034333 662034079 4.790000e-67 265.0
11 TraesCS5D01G494700 chr5B 82.564 195 13 8 268 462 662032079 662031906 3.890000e-33 152.0
12 TraesCS5D01G494700 chr5B 85.185 108 13 3 2103 2208 419844931 419845037 8.550000e-20 108.0
13 TraesCS5D01G494700 chr5B 86.765 68 4 4 1884 1951 279098349 279098287 1.120000e-08 71.3
14 TraesCS5D01G494700 chr7D 84.195 348 21 9 464 781 319903680 319904023 7.860000e-80 307.0
15 TraesCS5D01G494700 chr7D 83.668 349 21 10 464 781 311891308 311890965 1.700000e-76 296.0
16 TraesCS5D01G494700 chr7D 82.778 360 26 10 452 780 591216268 591216622 2.850000e-74 289.0
17 TraesCS5D01G494700 chr7D 87.879 66 4 3 1883 1948 204247188 204247249 8.670000e-10 75.0
18 TraesCS5D01G494700 chr2D 83.721 344 25 10 464 780 334325927 334326266 1.700000e-76 296.0
19 TraesCS5D01G494700 chr3B 82.991 341 33 13 464 780 450843897 450843558 3.680000e-73 285.0
20 TraesCS5D01G494700 chr3B 81.897 348 28 8 464 780 19972145 19971802 6.200000e-66 261.0
21 TraesCS5D01G494700 chr3B 83.784 74 9 3 1874 1946 425387465 425387536 1.450000e-07 67.6
22 TraesCS5D01G494700 chr4B 82.759 348 24 14 465 780 492208318 492208661 6.160000e-71 278.0
23 TraesCS5D01G494700 chr1B 82.456 342 34 9 465 780 324618293 324618634 2.220000e-70 276.0
24 TraesCS5D01G494700 chr1D 82.102 352 30 9 461 784 394813724 394813378 1.030000e-68 270.0
25 TraesCS5D01G494700 chr1A 82.184 348 27 12 464 780 188139746 188139403 1.330000e-67 267.0
26 TraesCS5D01G494700 chr1A 85.714 70 4 2 1883 1951 550334260 550334324 4.040000e-08 69.4
27 TraesCS5D01G494700 chr4A 81.089 349 29 15 465 780 365629345 365629689 6.250000e-61 244.0
28 TraesCS5D01G494700 chr4A 80.723 166 18 7 465 621 610828634 610828474 1.420000e-22 117.0
29 TraesCS5D01G494700 chr4A 86.957 69 4 1 1883 1951 626981491 626981554 3.120000e-09 73.1
30 TraesCS5D01G494700 chr6D 79.651 344 37 17 465 780 166782975 166783313 1.360000e-52 217.0
31 TraesCS5D01G494700 chr6D 78.767 292 24 17 461 719 199652474 199652188 6.470000e-36 161.0
32 TraesCS5D01G494700 chr6D 88.571 70 3 4 1882 1951 24554521 24554585 1.860000e-11 80.5
33 TraesCS5D01G494700 chr4D 84.000 250 15 10 556 780 365856862 365857111 1.360000e-52 217.0
34 TraesCS5D01G494700 chr7A 87.879 66 4 3 1883 1948 216344334 216344395 8.670000e-10 75.0
35 TraesCS5D01G494700 chr3A 84.810 79 6 5 1874 1951 434000989 434000916 8.670000e-10 75.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G494700 chr5D 526566993 526569256 2263 True 4181.00 4181 100.0000 1 2264 1 chr5D.!!$R3 2263
1 TraesCS5D01G494700 chr5A 653712591 653713823 1232 True 940.50 1391 94.9860 962 2264 2 chr5A.!!$R2 1302
2 TraesCS5D01G494700 chr5B 662030515 662034333 3818 True 570.25 1341 89.5885 17 2264 4 chr5B.!!$R3 2247

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
372 2388 0.037232 TCCAACGACACACACACACA 60.037 50.0 0.0 0.0 0.0 3.72 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1518 3566 0.897621 GCTGCTGCCCTTTGGTAAAT 59.102 50.0 3.85 0.0 0.0 1.4 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
57 58 0.673644 CCTTGCCGTTACCTGTCTGG 60.674 60.000 0.00 0.00 42.93 3.86
61 62 1.079127 CCGTTACCTGTCTGGCCTG 60.079 63.158 3.32 2.92 40.22 4.85
63 64 0.389948 CGTTACCTGTCTGGCCTGAC 60.390 60.000 30.22 30.22 40.22 3.51
69 70 1.821061 CTGTCTGGCCTGACCTCGTT 61.821 60.000 32.53 0.00 40.22 3.85
77 78 4.351938 TGACCTCGTTGCCGTCCG 62.352 66.667 0.00 0.00 35.01 4.79
122 123 1.073216 AGCGAGTTTGCAGATCGTCG 61.073 55.000 15.65 9.66 38.66 5.12
123 124 1.341802 CGAGTTTGCAGATCGTCGC 59.658 57.895 8.59 0.00 0.00 5.19
125 126 2.014093 GAGTTTGCAGATCGTCGCCG 62.014 60.000 2.92 0.00 0.00 6.46
126 127 2.813474 TTTGCAGATCGTCGCCGG 60.813 61.111 0.00 0.00 33.95 6.13
127 128 4.812476 TTGCAGATCGTCGCCGGG 62.812 66.667 2.18 0.00 33.95 5.73
157 165 2.946762 GAACAGGGACAGCGTTGC 59.053 61.111 0.00 0.00 0.00 4.17
158 166 1.598130 GAACAGGGACAGCGTTGCT 60.598 57.895 0.00 0.00 40.77 3.91
159 167 1.569479 GAACAGGGACAGCGTTGCTC 61.569 60.000 0.00 0.00 36.40 4.26
160 168 2.044806 AACAGGGACAGCGTTGCTCT 62.045 55.000 0.00 0.00 36.40 4.09
187 195 1.067416 GGTGATATCGGCTGACGCA 59.933 57.895 0.00 0.00 43.86 5.24
198 206 3.647649 CTGACGCACGGCAGGATCA 62.648 63.158 18.13 0.00 46.98 2.92
200 208 3.932580 GACGCACGGCAGGATCACA 62.933 63.158 0.00 0.00 0.00 3.58
202 210 2.816360 CGCACGGCAGGATCACATG 61.816 63.158 0.00 0.00 0.00 3.21
203 211 1.746615 GCACGGCAGGATCACATGT 60.747 57.895 0.00 0.00 0.00 3.21
204 212 0.461870 GCACGGCAGGATCACATGTA 60.462 55.000 0.00 0.00 0.00 2.29
207 215 2.100749 CACGGCAGGATCACATGTAGTA 59.899 50.000 0.00 0.00 0.00 1.82
210 218 2.434336 GGCAGGATCACATGTAGTACCA 59.566 50.000 0.00 0.00 0.00 3.25
277 2293 1.451028 GCCACTCAGACAGGCCATC 60.451 63.158 5.01 1.26 42.58 3.51
309 2325 4.876701 GTGAAGACCACACAGGCA 57.123 55.556 0.00 0.00 45.03 4.75
310 2326 3.094386 GTGAAGACCACACAGGCAA 57.906 52.632 0.00 0.00 45.03 4.52
311 2327 0.947244 GTGAAGACCACACAGGCAAG 59.053 55.000 0.00 0.00 45.03 4.01
327 2343 2.955881 AAGGCACGGCAGGGAGTAC 61.956 63.158 0.00 0.00 0.00 2.73
353 2369 0.694771 TGAGCTCCACTGCCAAGAAT 59.305 50.000 12.15 0.00 0.00 2.40
354 2370 1.339438 TGAGCTCCACTGCCAAGAATC 60.339 52.381 12.15 0.00 0.00 2.52
360 2376 1.522668 CACTGCCAAGAATCCAACGA 58.477 50.000 0.00 0.00 0.00 3.85
361 2377 1.197721 CACTGCCAAGAATCCAACGAC 59.802 52.381 0.00 0.00 0.00 4.34
362 2378 1.202758 ACTGCCAAGAATCCAACGACA 60.203 47.619 0.00 0.00 0.00 4.35
363 2379 1.197721 CTGCCAAGAATCCAACGACAC 59.802 52.381 0.00 0.00 0.00 3.67
364 2380 1.234821 GCCAAGAATCCAACGACACA 58.765 50.000 0.00 0.00 0.00 3.72
365 2381 1.069227 GCCAAGAATCCAACGACACAC 60.069 52.381 0.00 0.00 0.00 3.82
366 2382 2.217750 CCAAGAATCCAACGACACACA 58.782 47.619 0.00 0.00 0.00 3.72
367 2383 2.032030 CCAAGAATCCAACGACACACAC 60.032 50.000 0.00 0.00 0.00 3.82
368 2384 2.611751 CAAGAATCCAACGACACACACA 59.388 45.455 0.00 0.00 0.00 3.72
369 2385 2.210116 AGAATCCAACGACACACACAC 58.790 47.619 0.00 0.00 0.00 3.82
370 2386 1.937223 GAATCCAACGACACACACACA 59.063 47.619 0.00 0.00 0.00 3.72
371 2387 1.295792 ATCCAACGACACACACACAC 58.704 50.000 0.00 0.00 0.00 3.82
372 2388 0.037232 TCCAACGACACACACACACA 60.037 50.000 0.00 0.00 0.00 3.72
373 2389 0.096281 CCAACGACACACACACACAC 59.904 55.000 0.00 0.00 0.00 3.82
374 2390 0.793250 CAACGACACACACACACACA 59.207 50.000 0.00 0.00 0.00 3.72
375 2391 0.793861 AACGACACACACACACACAC 59.206 50.000 0.00 0.00 0.00 3.82
376 2392 0.319986 ACGACACACACACACACACA 60.320 50.000 0.00 0.00 0.00 3.72
383 2399 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
385 2401 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
390 2406 2.095314 CACACACACACACACACACATT 60.095 45.455 0.00 0.00 0.00 2.71
398 2414 2.682352 CACACACACACATTCAGGTTGA 59.318 45.455 0.00 0.00 0.00 3.18
409 2425 0.764271 TCAGGTTGACATGCACAGGA 59.236 50.000 0.00 0.00 0.00 3.86
421 2437 2.229792 TGCACAGGACATTTTCAGACC 58.770 47.619 0.00 0.00 0.00 3.85
454 2470 5.359576 AGCTAGATAACAGGTTCAGACTCTG 59.640 44.000 0.00 0.00 33.18 3.35
462 2478 1.609320 GGTTCAGACTCTGGGTTGCTC 60.609 57.143 6.20 0.00 31.51 4.26
463 2479 1.346068 GTTCAGACTCTGGGTTGCTCT 59.654 52.381 6.20 0.00 31.51 4.09
464 2480 1.722034 TCAGACTCTGGGTTGCTCTT 58.278 50.000 6.20 0.00 31.51 2.85
465 2481 1.345741 TCAGACTCTGGGTTGCTCTTG 59.654 52.381 6.20 0.00 31.51 3.02
466 2482 1.071385 CAGACTCTGGGTTGCTCTTGT 59.929 52.381 0.00 0.00 0.00 3.16
467 2483 1.771255 AGACTCTGGGTTGCTCTTGTT 59.229 47.619 0.00 0.00 0.00 2.83
468 2484 2.972713 AGACTCTGGGTTGCTCTTGTTA 59.027 45.455 0.00 0.00 0.00 2.41
469 2485 3.391296 AGACTCTGGGTTGCTCTTGTTAA 59.609 43.478 0.00 0.00 0.00 2.01
470 2486 3.744660 ACTCTGGGTTGCTCTTGTTAAG 58.255 45.455 0.00 0.00 0.00 1.85
471 2487 3.136626 ACTCTGGGTTGCTCTTGTTAAGT 59.863 43.478 0.00 0.00 0.00 2.24
472 2488 4.137543 CTCTGGGTTGCTCTTGTTAAGTT 58.862 43.478 0.00 0.00 0.00 2.66
473 2489 4.532834 TCTGGGTTGCTCTTGTTAAGTTT 58.467 39.130 0.00 0.00 0.00 2.66
474 2490 4.578928 TCTGGGTTGCTCTTGTTAAGTTTC 59.421 41.667 0.00 0.00 0.00 2.78
475 2491 4.274147 TGGGTTGCTCTTGTTAAGTTTCA 58.726 39.130 0.00 0.00 0.00 2.69
476 2492 4.892934 TGGGTTGCTCTTGTTAAGTTTCAT 59.107 37.500 0.00 0.00 0.00 2.57
477 2493 5.221224 TGGGTTGCTCTTGTTAAGTTTCATG 60.221 40.000 0.00 0.00 0.00 3.07
478 2494 4.681483 GGTTGCTCTTGTTAAGTTTCATGC 59.319 41.667 0.00 0.00 0.00 4.06
479 2495 4.145876 TGCTCTTGTTAAGTTTCATGCG 57.854 40.909 0.00 0.00 0.00 4.73
480 2496 2.911102 GCTCTTGTTAAGTTTCATGCGC 59.089 45.455 0.00 0.00 0.00 6.09
481 2497 3.365364 GCTCTTGTTAAGTTTCATGCGCT 60.365 43.478 9.73 0.00 0.00 5.92
482 2498 4.142902 GCTCTTGTTAAGTTTCATGCGCTA 60.143 41.667 9.73 0.00 0.00 4.26
483 2499 5.616866 GCTCTTGTTAAGTTTCATGCGCTAA 60.617 40.000 9.73 0.00 0.00 3.09
484 2500 5.685841 TCTTGTTAAGTTTCATGCGCTAAC 58.314 37.500 9.73 6.96 0.00 2.34
485 2501 4.413495 TGTTAAGTTTCATGCGCTAACC 57.587 40.909 9.73 0.00 0.00 2.85
486 2502 3.815962 TGTTAAGTTTCATGCGCTAACCA 59.184 39.130 9.73 0.00 0.00 3.67
487 2503 4.276183 TGTTAAGTTTCATGCGCTAACCAA 59.724 37.500 9.73 3.00 0.00 3.67
488 2504 2.989422 AGTTTCATGCGCTAACCAAC 57.011 45.000 9.73 5.47 0.00 3.77
489 2505 1.196808 AGTTTCATGCGCTAACCAACG 59.803 47.619 9.73 0.00 0.00 4.10
495 2511 3.335513 CGCTAACCAACGCAACCA 58.664 55.556 0.00 0.00 0.00 3.67
496 2512 1.873165 CGCTAACCAACGCAACCAT 59.127 52.632 0.00 0.00 0.00 3.55
497 2513 1.080298 CGCTAACCAACGCAACCATA 58.920 50.000 0.00 0.00 0.00 2.74
498 2514 1.465387 CGCTAACCAACGCAACCATAA 59.535 47.619 0.00 0.00 0.00 1.90
499 2515 2.475519 CGCTAACCAACGCAACCATAAG 60.476 50.000 0.00 0.00 0.00 1.73
500 2516 2.486592 GCTAACCAACGCAACCATAAGT 59.513 45.455 0.00 0.00 0.00 2.24
501 2517 3.425758 GCTAACCAACGCAACCATAAGTC 60.426 47.826 0.00 0.00 0.00 3.01
502 2518 1.530323 ACCAACGCAACCATAAGTCC 58.470 50.000 0.00 0.00 0.00 3.85
503 2519 1.202830 ACCAACGCAACCATAAGTCCA 60.203 47.619 0.00 0.00 0.00 4.02
504 2520 1.883275 CCAACGCAACCATAAGTCCAA 59.117 47.619 0.00 0.00 0.00 3.53
505 2521 2.294791 CCAACGCAACCATAAGTCCAAA 59.705 45.455 0.00 0.00 0.00 3.28
506 2522 3.305110 CAACGCAACCATAAGTCCAAAC 58.695 45.455 0.00 0.00 0.00 2.93
507 2523 2.858745 ACGCAACCATAAGTCCAAACT 58.141 42.857 0.00 0.00 37.32 2.66
508 2524 4.010667 ACGCAACCATAAGTCCAAACTA 57.989 40.909 0.00 0.00 33.48 2.24
509 2525 4.391155 ACGCAACCATAAGTCCAAACTAA 58.609 39.130 0.00 0.00 33.48 2.24
510 2526 5.007682 ACGCAACCATAAGTCCAAACTAAT 58.992 37.500 0.00 0.00 33.48 1.73
511 2527 5.106317 ACGCAACCATAAGTCCAAACTAATG 60.106 40.000 0.00 0.00 33.48 1.90
512 2528 5.106317 CGCAACCATAAGTCCAAACTAATGT 60.106 40.000 0.00 0.00 33.48 2.71
513 2529 6.092944 CGCAACCATAAGTCCAAACTAATGTA 59.907 38.462 0.00 0.00 33.48 2.29
514 2530 7.361371 CGCAACCATAAGTCCAAACTAATGTAA 60.361 37.037 0.00 0.00 33.48 2.41
515 2531 8.301002 GCAACCATAAGTCCAAACTAATGTAAA 58.699 33.333 0.00 0.00 33.48 2.01
518 2534 9.020731 ACCATAAGTCCAAACTAATGTAAAAGG 57.979 33.333 0.00 0.00 33.48 3.11
519 2535 7.973944 CCATAAGTCCAAACTAATGTAAAAGGC 59.026 37.037 0.00 0.00 33.48 4.35
520 2536 8.739972 CATAAGTCCAAACTAATGTAAAAGGCT 58.260 33.333 0.00 0.00 33.48 4.58
521 2537 9.969001 ATAAGTCCAAACTAATGTAAAAGGCTA 57.031 29.630 0.00 0.00 33.48 3.93
522 2538 7.923414 AGTCCAAACTAATGTAAAAGGCTAG 57.077 36.000 0.00 0.00 32.59 3.42
523 2539 7.459234 AGTCCAAACTAATGTAAAAGGCTAGT 58.541 34.615 0.00 0.00 32.59 2.57
524 2540 7.390718 AGTCCAAACTAATGTAAAAGGCTAGTG 59.609 37.037 0.00 0.00 32.59 2.74
525 2541 6.150474 TCCAAACTAATGTAAAAGGCTAGTGC 59.850 38.462 0.00 0.00 38.76 4.40
526 2542 6.072175 CCAAACTAATGTAAAAGGCTAGTGCA 60.072 38.462 0.00 0.00 41.91 4.57
527 2543 7.367285 CAAACTAATGTAAAAGGCTAGTGCAA 58.633 34.615 0.00 0.00 41.91 4.08
528 2544 7.703058 AACTAATGTAAAAGGCTAGTGCAAT 57.297 32.000 0.00 0.00 41.91 3.56
529 2545 7.321745 ACTAATGTAAAAGGCTAGTGCAATC 57.678 36.000 0.00 0.00 41.91 2.67
530 2546 5.582689 AATGTAAAAGGCTAGTGCAATCC 57.417 39.130 0.00 0.00 41.91 3.01
531 2547 4.027674 TGTAAAAGGCTAGTGCAATCCA 57.972 40.909 0.00 0.00 41.91 3.41
532 2548 3.756434 TGTAAAAGGCTAGTGCAATCCAC 59.244 43.478 0.00 0.00 45.01 4.02
544 2560 5.160699 GTGCAATCCACACATACATACTG 57.839 43.478 0.00 0.00 44.06 2.74
545 2561 4.635765 GTGCAATCCACACATACATACTGT 59.364 41.667 0.00 0.00 44.06 3.55
546 2562 5.815222 GTGCAATCCACACATACATACTGTA 59.185 40.000 0.00 0.00 44.06 2.74
547 2563 6.315144 GTGCAATCCACACATACATACTGTAA 59.685 38.462 0.00 0.00 44.06 2.41
548 2564 6.315144 TGCAATCCACACATACATACTGTAAC 59.685 38.462 0.00 0.00 36.31 2.50
549 2565 6.315144 GCAATCCACACATACATACTGTAACA 59.685 38.462 0.00 0.00 36.31 2.41
550 2566 7.676338 GCAATCCACACATACATACTGTAACAC 60.676 40.741 0.00 0.00 36.31 3.32
551 2567 5.726397 TCCACACATACATACTGTAACACC 58.274 41.667 0.00 0.00 36.31 4.16
552 2568 4.873827 CCACACATACATACTGTAACACCC 59.126 45.833 0.00 0.00 36.31 4.61
553 2569 5.338056 CCACACATACATACTGTAACACCCT 60.338 44.000 0.00 0.00 36.31 4.34
554 2570 5.810587 CACACATACATACTGTAACACCCTC 59.189 44.000 0.00 0.00 36.31 4.30
555 2571 5.720041 ACACATACATACTGTAACACCCTCT 59.280 40.000 0.00 0.00 36.31 3.69
556 2572 6.042777 CACATACATACTGTAACACCCTCTG 58.957 44.000 0.00 0.00 36.31 3.35
557 2573 5.955959 ACATACATACTGTAACACCCTCTGA 59.044 40.000 0.00 0.00 36.31 3.27
558 2574 4.803098 ACATACTGTAACACCCTCTGAC 57.197 45.455 0.00 0.00 0.00 3.51
559 2575 4.157246 ACATACTGTAACACCCTCTGACA 58.843 43.478 0.00 0.00 0.00 3.58
560 2576 4.220821 ACATACTGTAACACCCTCTGACAG 59.779 45.833 0.00 0.00 42.58 3.51
561 2577 1.971357 ACTGTAACACCCTCTGACAGG 59.029 52.381 1.81 0.00 41.46 4.00
570 2586 2.758736 CCTCTGACAGGGAAGACAAG 57.241 55.000 3.10 0.00 38.91 3.16
571 2587 1.974236 CCTCTGACAGGGAAGACAAGT 59.026 52.381 3.10 0.00 38.91 3.16
572 2588 2.028567 CCTCTGACAGGGAAGACAAGTC 60.029 54.545 3.10 0.00 38.91 3.01
573 2589 2.630098 CTCTGACAGGGAAGACAAGTCA 59.370 50.000 0.00 0.00 37.61 3.41
574 2590 3.038280 TCTGACAGGGAAGACAAGTCAA 58.962 45.455 1.81 0.00 38.58 3.18
575 2591 3.134458 CTGACAGGGAAGACAAGTCAAC 58.866 50.000 2.72 0.00 38.58 3.18
576 2592 2.503765 TGACAGGGAAGACAAGTCAACA 59.496 45.455 2.72 0.00 36.39 3.33
577 2593 2.872858 GACAGGGAAGACAAGTCAACAC 59.127 50.000 2.72 0.00 0.00 3.32
578 2594 1.867233 CAGGGAAGACAAGTCAACACG 59.133 52.381 2.72 0.00 0.00 4.49
579 2595 1.485066 AGGGAAGACAAGTCAACACGT 59.515 47.619 2.72 0.00 0.00 4.49
580 2596 1.597663 GGGAAGACAAGTCAACACGTG 59.402 52.381 15.48 15.48 37.95 4.49
581 2597 1.003866 GGAAGACAAGTCAACACGTGC 60.004 52.381 17.22 0.00 35.56 5.34
582 2598 1.663643 GAAGACAAGTCAACACGTGCA 59.336 47.619 17.22 0.00 35.56 4.57
583 2599 1.732941 AGACAAGTCAACACGTGCAA 58.267 45.000 17.22 0.00 35.56 4.08
584 2600 1.396996 AGACAAGTCAACACGTGCAAC 59.603 47.619 17.22 11.35 35.56 4.17
585 2601 0.450184 ACAAGTCAACACGTGCAACC 59.550 50.000 17.22 1.27 35.56 3.77
586 2602 0.588730 CAAGTCAACACGTGCAACCG 60.589 55.000 17.22 0.00 0.00 4.44
587 2603 1.711060 AAGTCAACACGTGCAACCGG 61.711 55.000 17.22 0.00 0.00 5.28
588 2604 2.174969 GTCAACACGTGCAACCGGA 61.175 57.895 17.22 1.30 0.00 5.14
589 2605 1.449778 TCAACACGTGCAACCGGAA 60.450 52.632 17.22 0.00 0.00 4.30
590 2606 1.010125 CAACACGTGCAACCGGAAG 60.010 57.895 17.22 0.00 0.00 3.46
591 2607 1.153329 AACACGTGCAACCGGAAGA 60.153 52.632 17.22 0.00 0.00 2.87
592 2608 1.157870 AACACGTGCAACCGGAAGAG 61.158 55.000 17.22 0.00 0.00 2.85
593 2609 1.300620 CACGTGCAACCGGAAGAGA 60.301 57.895 9.46 0.00 0.00 3.10
594 2610 1.006102 ACGTGCAACCGGAAGAGAG 60.006 57.895 9.46 0.00 0.00 3.20
595 2611 2.383527 CGTGCAACCGGAAGAGAGC 61.384 63.158 9.46 2.83 0.00 4.09
596 2612 2.048222 TGCAACCGGAAGAGAGCG 60.048 61.111 9.46 0.00 0.00 5.03
597 2613 2.261671 GCAACCGGAAGAGAGCGA 59.738 61.111 9.46 0.00 0.00 4.93
598 2614 2.095252 GCAACCGGAAGAGAGCGAC 61.095 63.158 9.46 0.00 0.00 5.19
599 2615 1.801913 CAACCGGAAGAGAGCGACG 60.802 63.158 9.46 0.00 0.00 5.12
601 2617 4.856607 CCGGAAGAGAGCGACGGC 62.857 72.222 0.00 0.00 37.93 5.68
617 2633 3.463690 GCGCGCGAAACTCACGTA 61.464 61.111 37.18 0.00 0.00 3.57
618 2634 2.785105 GCGCGCGAAACTCACGTAT 61.785 57.895 37.18 0.00 0.00 3.06
619 2635 1.014825 CGCGCGAAACTCACGTATG 60.015 57.895 28.94 0.00 0.00 2.39
620 2636 1.400246 CGCGCGAAACTCACGTATGA 61.400 55.000 28.94 0.00 0.00 2.15
621 2637 0.921347 GCGCGAAACTCACGTATGAT 59.079 50.000 12.10 0.00 33.22 2.45
622 2638 2.114056 GCGCGAAACTCACGTATGATA 58.886 47.619 12.10 0.00 33.22 2.15
623 2639 2.098021 GCGCGAAACTCACGTATGATAC 60.098 50.000 12.10 0.00 33.22 2.24
624 2640 3.103007 CGCGAAACTCACGTATGATACA 58.897 45.455 0.00 0.00 33.22 2.29
625 2641 3.544682 CGCGAAACTCACGTATGATACAA 59.455 43.478 0.00 0.00 33.22 2.41
626 2642 4.030865 CGCGAAACTCACGTATGATACAAA 59.969 41.667 0.00 0.00 33.22 2.83
627 2643 5.481472 GCGAAACTCACGTATGATACAAAG 58.519 41.667 3.24 0.00 33.22 2.77
628 2644 5.500290 GCGAAACTCACGTATGATACAAAGG 60.500 44.000 3.24 0.00 33.22 3.11
629 2645 5.005394 CGAAACTCACGTATGATACAAAGGG 59.995 44.000 3.24 0.00 33.22 3.95
630 2646 4.402056 ACTCACGTATGATACAAAGGGG 57.598 45.455 3.24 0.00 33.22 4.79
631 2647 3.134081 ACTCACGTATGATACAAAGGGGG 59.866 47.826 3.24 0.00 33.22 5.40
632 2648 2.158871 TCACGTATGATACAAAGGGGGC 60.159 50.000 3.24 0.00 0.00 5.80
633 2649 1.841277 ACGTATGATACAAAGGGGGCA 59.159 47.619 3.24 0.00 0.00 5.36
634 2650 2.240160 ACGTATGATACAAAGGGGGCAA 59.760 45.455 3.24 0.00 0.00 4.52
635 2651 2.616842 CGTATGATACAAAGGGGGCAAC 59.383 50.000 3.24 0.00 0.00 4.17
655 2671 8.504812 GGCAACCATCAATTTTTAACAAATTG 57.495 30.769 19.21 19.21 44.65 2.32
656 2672 7.114670 GGCAACCATCAATTTTTAACAAATTGC 59.885 33.333 19.85 13.28 43.60 3.56
657 2673 7.149160 GCAACCATCAATTTTTAACAAATTGCG 60.149 33.333 19.85 15.72 43.60 4.85
658 2674 6.369799 ACCATCAATTTTTAACAAATTGCGC 58.630 32.000 19.85 0.00 43.60 6.09
659 2675 6.017605 ACCATCAATTTTTAACAAATTGCGCA 60.018 30.769 5.66 5.66 43.60 6.09
660 2676 6.854892 CCATCAATTTTTAACAAATTGCGCAA 59.145 30.769 27.24 27.24 43.60 4.85
661 2677 7.059716 CCATCAATTTTTAACAAATTGCGCAAG 59.940 33.333 28.62 17.16 43.60 4.01
689 2705 2.770164 TGAACTCAAGGCCTTAGCTC 57.230 50.000 20.00 15.95 39.73 4.09
690 2706 2.260822 TGAACTCAAGGCCTTAGCTCT 58.739 47.619 20.00 1.44 39.73 4.09
691 2707 2.027745 TGAACTCAAGGCCTTAGCTCTG 60.028 50.000 20.00 5.46 39.73 3.35
692 2708 1.944177 ACTCAAGGCCTTAGCTCTGA 58.056 50.000 20.00 10.22 39.73 3.27
693 2709 2.476199 ACTCAAGGCCTTAGCTCTGAT 58.524 47.619 20.00 0.00 39.73 2.90
694 2710 3.647636 ACTCAAGGCCTTAGCTCTGATA 58.352 45.455 20.00 0.00 39.73 2.15
695 2711 4.230455 ACTCAAGGCCTTAGCTCTGATAT 58.770 43.478 20.00 0.00 39.73 1.63
696 2712 4.283212 ACTCAAGGCCTTAGCTCTGATATC 59.717 45.833 20.00 0.00 39.73 1.63
697 2713 4.226384 TCAAGGCCTTAGCTCTGATATCA 58.774 43.478 20.00 5.07 39.73 2.15
698 2714 4.842948 TCAAGGCCTTAGCTCTGATATCAT 59.157 41.667 20.00 0.00 39.73 2.45
699 2715 4.822685 AGGCCTTAGCTCTGATATCATG 57.177 45.455 5.72 3.81 39.73 3.07
700 2716 4.166539 AGGCCTTAGCTCTGATATCATGT 58.833 43.478 5.72 0.00 39.73 3.21
701 2717 4.596643 AGGCCTTAGCTCTGATATCATGTT 59.403 41.667 5.72 3.45 39.73 2.71
702 2718 5.782331 AGGCCTTAGCTCTGATATCATGTTA 59.218 40.000 5.72 2.52 39.73 2.41
703 2719 6.270927 AGGCCTTAGCTCTGATATCATGTTAA 59.729 38.462 5.72 9.66 39.73 2.01
704 2720 6.593382 GGCCTTAGCTCTGATATCATGTTAAG 59.407 42.308 21.73 21.73 39.73 1.85
705 2721 6.091986 GCCTTAGCTCTGATATCATGTTAAGC 59.908 42.308 22.48 17.97 35.50 3.09
706 2722 7.385267 CCTTAGCTCTGATATCATGTTAAGCT 58.615 38.462 22.48 21.60 41.41 3.74
707 2723 7.877097 CCTTAGCTCTGATATCATGTTAAGCTT 59.123 37.037 22.48 3.48 39.42 3.74
708 2724 8.824159 TTAGCTCTGATATCATGTTAAGCTTC 57.176 34.615 21.43 0.00 39.42 3.86
709 2725 6.824553 AGCTCTGATATCATGTTAAGCTTCA 58.175 36.000 0.00 0.00 35.42 3.02
710 2726 7.451732 AGCTCTGATATCATGTTAAGCTTCAT 58.548 34.615 0.00 0.00 35.42 2.57
711 2727 7.388224 AGCTCTGATATCATGTTAAGCTTCATG 59.612 37.037 17.82 17.82 41.64 3.07
712 2728 7.430992 TCTGATATCATGTTAAGCTTCATGC 57.569 36.000 18.71 8.92 40.54 4.06
713 2729 6.993902 TCTGATATCATGTTAAGCTTCATGCA 59.006 34.615 18.71 11.99 45.94 3.96
714 2730 6.962686 TGATATCATGTTAAGCTTCATGCAC 58.037 36.000 18.71 11.85 45.94 4.57
715 2731 6.769341 TGATATCATGTTAAGCTTCATGCACT 59.231 34.615 18.71 10.88 45.94 4.40
716 2732 7.933033 TGATATCATGTTAAGCTTCATGCACTA 59.067 33.333 18.71 12.19 45.94 2.74
717 2733 6.615264 ATCATGTTAAGCTTCATGCACTAG 57.385 37.500 18.71 0.00 45.94 2.57
718 2734 4.333649 TCATGTTAAGCTTCATGCACTAGC 59.666 41.667 18.71 8.13 45.94 3.42
719 2735 3.009723 TGTTAAGCTTCATGCACTAGCC 58.990 45.455 0.00 0.11 45.94 3.93
720 2736 3.009723 GTTAAGCTTCATGCACTAGCCA 58.990 45.455 0.00 0.00 45.94 4.75
721 2737 2.205022 AAGCTTCATGCACTAGCCAA 57.795 45.000 11.63 0.00 45.94 4.52
722 2738 1.457346 AGCTTCATGCACTAGCCAAC 58.543 50.000 11.63 0.00 45.94 3.77
723 2739 0.097674 GCTTCATGCACTAGCCAACG 59.902 55.000 5.46 0.00 42.31 4.10
724 2740 0.097674 CTTCATGCACTAGCCAACGC 59.902 55.000 0.00 0.00 41.13 4.84
725 2741 0.605050 TTCATGCACTAGCCAACGCA 60.605 50.000 0.00 0.00 41.13 5.24
726 2742 1.020861 TCATGCACTAGCCAACGCAG 61.021 55.000 0.00 0.00 41.13 5.18
727 2743 1.003355 ATGCACTAGCCAACGCAGT 60.003 52.632 0.00 0.00 42.35 4.40
728 2744 1.021390 ATGCACTAGCCAACGCAGTC 61.021 55.000 0.00 0.00 39.75 3.51
729 2745 1.667830 GCACTAGCCAACGCAGTCA 60.668 57.895 0.00 0.00 34.61 3.41
730 2746 1.227999 GCACTAGCCAACGCAGTCAA 61.228 55.000 0.00 0.00 34.61 3.18
731 2747 1.225855 CACTAGCCAACGCAGTCAAA 58.774 50.000 0.00 0.00 45.00 2.69
732 2748 1.601903 CACTAGCCAACGCAGTCAAAA 59.398 47.619 0.00 0.00 45.00 2.44
733 2749 1.873591 ACTAGCCAACGCAGTCAAAAG 59.126 47.619 0.00 0.00 45.00 2.27
734 2750 1.873591 CTAGCCAACGCAGTCAAAAGT 59.126 47.619 0.00 0.00 45.00 2.66
735 2751 0.663153 AGCCAACGCAGTCAAAAGTC 59.337 50.000 0.00 0.00 45.00 3.01
736 2752 0.317854 GCCAACGCAGTCAAAAGTCC 60.318 55.000 0.00 0.00 45.00 3.85
737 2753 0.041312 CCAACGCAGTCAAAAGTCCG 60.041 55.000 0.00 0.00 45.00 4.79
738 2754 0.934496 CAACGCAGTCAAAAGTCCGA 59.066 50.000 0.00 0.00 45.00 4.55
739 2755 1.329292 CAACGCAGTCAAAAGTCCGAA 59.671 47.619 0.00 0.00 45.00 4.30
740 2756 1.878953 ACGCAGTCAAAAGTCCGAAT 58.121 45.000 0.00 0.00 29.74 3.34
741 2757 2.218603 ACGCAGTCAAAAGTCCGAATT 58.781 42.857 0.00 0.00 29.74 2.17
742 2758 3.395639 ACGCAGTCAAAAGTCCGAATTA 58.604 40.909 0.00 0.00 29.74 1.40
743 2759 3.810941 ACGCAGTCAAAAGTCCGAATTAA 59.189 39.130 0.00 0.00 29.74 1.40
744 2760 4.454504 ACGCAGTCAAAAGTCCGAATTAAT 59.545 37.500 0.00 0.00 29.74 1.40
745 2761 4.788100 CGCAGTCAAAAGTCCGAATTAATG 59.212 41.667 0.00 0.00 0.00 1.90
746 2762 5.095490 GCAGTCAAAAGTCCGAATTAATGG 58.905 41.667 0.00 0.00 0.00 3.16
747 2763 5.106317 GCAGTCAAAAGTCCGAATTAATGGA 60.106 40.000 0.00 0.00 0.00 3.41
748 2764 6.569610 GCAGTCAAAAGTCCGAATTAATGGAA 60.570 38.462 0.00 0.00 35.67 3.53
749 2765 7.367285 CAGTCAAAAGTCCGAATTAATGGAAA 58.633 34.615 0.00 0.00 35.67 3.13
750 2766 7.538678 CAGTCAAAAGTCCGAATTAATGGAAAG 59.461 37.037 0.00 0.00 35.67 2.62
751 2767 6.806739 GTCAAAAGTCCGAATTAATGGAAAGG 59.193 38.462 0.00 0.00 35.67 3.11
752 2768 5.914898 AAAGTCCGAATTAATGGAAAGGG 57.085 39.130 0.00 0.00 35.67 3.95
753 2769 3.288092 AGTCCGAATTAATGGAAAGGGC 58.712 45.455 0.00 0.00 35.67 5.19
754 2770 3.053619 AGTCCGAATTAATGGAAAGGGCT 60.054 43.478 0.00 0.00 35.67 5.19
755 2771 4.165372 AGTCCGAATTAATGGAAAGGGCTA 59.835 41.667 0.00 0.00 35.67 3.93
756 2772 4.515567 GTCCGAATTAATGGAAAGGGCTAG 59.484 45.833 0.00 0.00 35.67 3.42
757 2773 4.165372 TCCGAATTAATGGAAAGGGCTAGT 59.835 41.667 0.00 0.00 0.00 2.57
758 2774 4.275936 CCGAATTAATGGAAAGGGCTAGTG 59.724 45.833 0.00 0.00 0.00 2.74
759 2775 4.261197 CGAATTAATGGAAAGGGCTAGTGC 60.261 45.833 0.00 0.00 38.76 4.40
760 2776 3.730215 TTAATGGAAAGGGCTAGTGCA 57.270 42.857 0.00 0.00 41.91 4.57
761 2777 2.603075 AATGGAAAGGGCTAGTGCAA 57.397 45.000 0.00 0.00 41.91 4.08
762 2778 2.834638 ATGGAAAGGGCTAGTGCAAT 57.165 45.000 0.00 0.00 41.91 3.56
763 2779 2.128771 TGGAAAGGGCTAGTGCAATC 57.871 50.000 0.00 0.00 41.91 2.67
764 2780 1.340991 TGGAAAGGGCTAGTGCAATCC 60.341 52.381 0.00 0.00 41.91 3.01
765 2781 1.340991 GGAAAGGGCTAGTGCAATCCA 60.341 52.381 0.00 0.00 41.91 3.41
766 2782 1.745653 GAAAGGGCTAGTGCAATCCAC 59.254 52.381 0.00 0.00 45.01 4.02
778 2794 5.338614 GTGCAATCCACATATACCGTAAC 57.661 43.478 0.00 0.00 44.06 2.50
779 2795 4.812091 GTGCAATCCACATATACCGTAACA 59.188 41.667 0.00 0.00 44.06 2.41
780 2796 5.294799 GTGCAATCCACATATACCGTAACAA 59.705 40.000 0.00 0.00 44.06 2.83
781 2797 5.294799 TGCAATCCACATATACCGTAACAAC 59.705 40.000 0.00 0.00 0.00 3.32
782 2798 5.526111 GCAATCCACATATACCGTAACAACT 59.474 40.000 0.00 0.00 0.00 3.16
783 2799 6.292703 GCAATCCACATATACCGTAACAACTC 60.293 42.308 0.00 0.00 0.00 3.01
790 2806 8.350722 CACATATACCGTAACAACTCTGACTAT 58.649 37.037 0.00 0.00 0.00 2.12
798 2814 2.567615 ACAACTCTGACTATCGGCCTTT 59.432 45.455 0.00 0.00 0.00 3.11
801 2817 3.600388 ACTCTGACTATCGGCCTTTTTG 58.400 45.455 0.00 0.00 0.00 2.44
830 2867 4.137872 GCGTGCCATGCCAGCATT 62.138 61.111 1.47 0.00 43.29 3.56
854 2891 2.045926 GGGCGGTGTCATTCTGCT 60.046 61.111 0.00 0.00 37.35 4.24
863 2900 1.086634 GTCATTCTGCTGGCGGACTC 61.087 60.000 3.35 0.00 0.00 3.36
881 2918 0.176680 TCGGGCTCTTGATGCTTCTC 59.823 55.000 0.88 0.00 0.00 2.87
883 2920 1.410517 CGGGCTCTTGATGCTTCTCTA 59.589 52.381 0.88 0.00 0.00 2.43
890 2927 2.975732 TGATGCTTCTCTACTGCTGG 57.024 50.000 0.88 0.00 0.00 4.85
899 2936 2.079925 CTCTACTGCTGGTTTCTTGCC 58.920 52.381 0.00 0.00 0.00 4.52
901 2938 1.808945 CTACTGCTGGTTTCTTGCCTG 59.191 52.381 0.00 0.00 0.00 4.85
909 2946 1.239347 GTTTCTTGCCTGGGTCACTC 58.761 55.000 0.00 0.00 0.00 3.51
910 2947 0.250295 TTTCTTGCCTGGGTCACTCG 60.250 55.000 0.00 0.00 0.00 4.18
911 2948 1.118965 TTCTTGCCTGGGTCACTCGA 61.119 55.000 0.00 0.00 0.00 4.04
912 2949 1.079543 CTTGCCTGGGTCACTCGAG 60.080 63.158 11.84 11.84 0.00 4.04
913 2950 1.821061 CTTGCCTGGGTCACTCGAGT 61.821 60.000 13.58 13.58 0.00 4.18
914 2951 1.816863 TTGCCTGGGTCACTCGAGTC 61.817 60.000 16.96 5.28 0.00 3.36
915 2952 1.979693 GCCTGGGTCACTCGAGTCT 60.980 63.158 16.96 0.00 0.00 3.24
916 2953 1.536943 GCCTGGGTCACTCGAGTCTT 61.537 60.000 16.96 0.00 0.00 3.01
917 2954 0.244994 CCTGGGTCACTCGAGTCTTG 59.755 60.000 16.96 4.99 0.00 3.02
918 2955 1.248486 CTGGGTCACTCGAGTCTTGA 58.752 55.000 16.96 7.69 0.00 3.02
919 2956 1.613925 CTGGGTCACTCGAGTCTTGAA 59.386 52.381 16.96 0.68 0.00 2.69
920 2957 1.340248 TGGGTCACTCGAGTCTTGAAC 59.660 52.381 16.96 13.04 0.00 3.18
921 2958 1.336980 GGGTCACTCGAGTCTTGAACC 60.337 57.143 19.41 19.41 39.89 3.62
922 2959 1.336980 GGTCACTCGAGTCTTGAACCC 60.337 57.143 16.96 5.33 0.00 4.11
923 2960 0.966920 TCACTCGAGTCTTGAACCCC 59.033 55.000 16.96 0.00 0.00 4.95
924 2961 0.969894 CACTCGAGTCTTGAACCCCT 59.030 55.000 16.96 0.00 0.00 4.79
925 2962 1.344763 CACTCGAGTCTTGAACCCCTT 59.655 52.381 16.96 0.00 0.00 3.95
926 2963 1.619332 ACTCGAGTCTTGAACCCCTTC 59.381 52.381 13.58 0.00 0.00 3.46
927 2964 1.896465 CTCGAGTCTTGAACCCCTTCT 59.104 52.381 3.62 0.00 0.00 2.85
928 2965 3.090037 CTCGAGTCTTGAACCCCTTCTA 58.910 50.000 3.62 0.00 0.00 2.10
929 2966 3.090037 TCGAGTCTTGAACCCCTTCTAG 58.910 50.000 0.00 0.00 32.32 2.43
930 2967 3.090037 CGAGTCTTGAACCCCTTCTAGA 58.910 50.000 0.00 0.00 36.34 2.43
931 2968 3.510360 CGAGTCTTGAACCCCTTCTAGAA 59.490 47.826 4.81 4.81 39.17 2.10
932 2969 4.618693 CGAGTCTTGAACCCCTTCTAGAAC 60.619 50.000 0.00 0.00 39.17 3.01
933 2970 4.232091 AGTCTTGAACCCCTTCTAGAACA 58.768 43.478 0.00 0.00 39.17 3.18
934 2971 4.284746 AGTCTTGAACCCCTTCTAGAACAG 59.715 45.833 0.00 0.00 39.17 3.16
935 2972 4.283722 GTCTTGAACCCCTTCTAGAACAGA 59.716 45.833 0.00 0.00 39.17 3.41
936 2973 4.528596 TCTTGAACCCCTTCTAGAACAGAG 59.471 45.833 0.00 0.00 35.93 3.35
937 2974 4.127918 TGAACCCCTTCTAGAACAGAGA 57.872 45.455 0.00 0.00 33.83 3.10
938 2975 3.833070 TGAACCCCTTCTAGAACAGAGAC 59.167 47.826 0.00 0.00 33.83 3.36
939 2976 3.837399 ACCCCTTCTAGAACAGAGACT 57.163 47.619 0.00 0.00 33.83 3.24
940 2977 4.949966 ACCCCTTCTAGAACAGAGACTA 57.050 45.455 0.00 0.00 33.83 2.59
941 2978 4.602107 ACCCCTTCTAGAACAGAGACTAC 58.398 47.826 0.00 0.00 33.83 2.73
942 2979 4.044317 ACCCCTTCTAGAACAGAGACTACA 59.956 45.833 0.00 0.00 33.83 2.74
943 2980 5.205056 CCCCTTCTAGAACAGAGACTACAT 58.795 45.833 0.00 0.00 33.83 2.29
944 2981 6.068971 ACCCCTTCTAGAACAGAGACTACATA 60.069 42.308 0.00 0.00 33.83 2.29
945 2982 6.834451 CCCCTTCTAGAACAGAGACTACATAA 59.166 42.308 0.00 0.00 33.83 1.90
946 2983 7.507616 CCCCTTCTAGAACAGAGACTACATAAT 59.492 40.741 0.00 0.00 33.83 1.28
947 2984 8.573035 CCCTTCTAGAACAGAGACTACATAATC 58.427 40.741 0.00 0.00 33.83 1.75
948 2985 8.573035 CCTTCTAGAACAGAGACTACATAATCC 58.427 40.741 0.00 0.00 33.83 3.01
949 2986 9.126151 CTTCTAGAACAGAGACTACATAATCCA 57.874 37.037 0.00 0.00 33.83 3.41
950 2987 9.647918 TTCTAGAACAGAGACTACATAATCCAT 57.352 33.333 0.00 0.00 33.83 3.41
951 2988 9.072375 TCTAGAACAGAGACTACATAATCCATG 57.928 37.037 0.00 0.00 40.78 3.66
952 2989 7.060383 AGAACAGAGACTACATAATCCATGG 57.940 40.000 4.97 4.97 39.13 3.66
953 2990 6.841229 AGAACAGAGACTACATAATCCATGGA 59.159 38.462 18.88 18.88 39.13 3.41
954 2991 7.512058 AGAACAGAGACTACATAATCCATGGAT 59.488 37.037 22.15 22.15 39.13 3.41
955 2992 7.002250 ACAGAGACTACATAATCCATGGATG 57.998 40.000 27.97 19.20 39.13 3.51
970 3007 0.103937 GGATGGCCTCGAGTCTTGAG 59.896 60.000 12.31 9.90 0.00 3.02
1019 3056 2.038426 CCATGGTCGGCCTCATATTACA 59.962 50.000 7.97 0.00 35.27 2.41
1115 3152 7.648142 AGCTTTTTATCAATGACACGAAAGAA 58.352 30.769 11.69 0.00 0.00 2.52
1144 3181 1.830279 ACTTGTGAGATACGGTCGGA 58.170 50.000 0.00 0.00 0.00 4.55
1263 3300 2.736721 GTCGCACTTTGCAGTAAGATGA 59.263 45.455 5.15 0.00 45.36 2.92
1297 3334 7.835822 TGGGTAAATTAGTTGAATGGATGTTG 58.164 34.615 0.00 0.00 0.00 3.33
1328 3368 4.694509 GCTGAATATGAGCTCCTGGTAATG 59.305 45.833 12.15 0.00 33.37 1.90
1368 3416 1.199789 CTTTGCCAAGAACGCAGCATA 59.800 47.619 0.00 0.00 37.57 3.14
1369 3417 1.462616 TTGCCAAGAACGCAGCATAT 58.537 45.000 0.00 0.00 37.57 1.78
1370 3418 2.323968 TGCCAAGAACGCAGCATATA 57.676 45.000 0.00 0.00 0.00 0.86
1371 3419 2.849942 TGCCAAGAACGCAGCATATAT 58.150 42.857 0.00 0.00 0.00 0.86
1442 3490 5.719173 AGAAGATGAGCTGAAACTACTGAC 58.281 41.667 0.00 0.00 0.00 3.51
1655 3703 6.228258 ACATTTCCCGATATAGTTTGCGTAT 58.772 36.000 0.00 0.00 0.00 3.06
1656 3704 6.708949 ACATTTCCCGATATAGTTTGCGTATT 59.291 34.615 0.00 0.00 0.00 1.89
1657 3705 6.774354 TTTCCCGATATAGTTTGCGTATTC 57.226 37.500 0.00 0.00 0.00 1.75
1658 3706 5.456548 TCCCGATATAGTTTGCGTATTCA 57.543 39.130 0.00 0.00 0.00 2.57
1659 3707 5.224888 TCCCGATATAGTTTGCGTATTCAC 58.775 41.667 0.00 0.00 0.00 3.18
1660 3708 4.986034 CCCGATATAGTTTGCGTATTCACA 59.014 41.667 0.00 0.00 0.00 3.58
1661 3709 5.118664 CCCGATATAGTTTGCGTATTCACAG 59.881 44.000 0.00 0.00 0.00 3.66
1662 3710 5.690409 CCGATATAGTTTGCGTATTCACAGT 59.310 40.000 0.00 0.00 0.00 3.55
1819 3867 8.696410 TCAAGAAAGTAATGTTGTTCCAAAAC 57.304 30.769 0.00 0.00 35.85 2.43
1939 3992 6.572519 AGATCAGTGATCTAAAAGACTGAGC 58.427 40.000 30.16 15.34 46.15 4.26
1940 3993 5.991933 TCAGTGATCTAAAAGACTGAGCT 57.008 39.130 7.11 0.00 39.86 4.09
1941 3994 7.652524 ATCAGTGATCTAAAAGACTGAGCTA 57.347 36.000 14.41 0.00 45.94 3.32
1942 3995 7.468141 TCAGTGATCTAAAAGACTGAGCTAA 57.532 36.000 7.11 0.00 39.86 3.09
1943 3996 7.896811 TCAGTGATCTAAAAGACTGAGCTAAA 58.103 34.615 7.11 0.00 39.86 1.85
1944 3997 8.367911 TCAGTGATCTAAAAGACTGAGCTAAAA 58.632 33.333 7.11 0.00 39.86 1.52
1945 3998 8.655092 CAGTGATCTAAAAGACTGAGCTAAAAG 58.345 37.037 3.16 0.00 38.49 2.27
1946 3999 8.589338 AGTGATCTAAAAGACTGAGCTAAAAGA 58.411 33.333 0.00 0.00 0.00 2.52
1947 4000 9.377312 GTGATCTAAAAGACTGAGCTAAAAGAT 57.623 33.333 0.00 0.00 0.00 2.40
1948 4001 9.593134 TGATCTAAAAGACTGAGCTAAAAGATC 57.407 33.333 0.00 0.00 37.31 2.75
1949 4002 9.816354 GATCTAAAAGACTGAGCTAAAAGATCT 57.184 33.333 0.00 0.00 35.11 2.75
1962 4015 7.126733 AGCTAAAAGATCTTGAGGGAGTACTA 58.873 38.462 9.17 0.00 0.00 1.82
2031 4084 5.356190 CACTCAATTGTTCCAGTCATATGCT 59.644 40.000 5.13 0.00 0.00 3.79
2116 4171 5.359576 TGCAAGTCAAAAGTTACCTGTTGAT 59.640 36.000 0.00 0.00 44.71 2.57
2176 4231 2.146342 CTTGTGGTCACATGACTGTCC 58.854 52.381 11.63 0.00 44.20 4.02
2243 4298 3.324846 TGCAGTATAATCCTGGGCAGTAG 59.675 47.826 0.00 0.00 0.00 2.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.300481 CAGAGTGCAGAGCCATGATG 58.700 55.000 0.00 0.00 0.00 3.07
1 2 0.464013 GCAGAGTGCAGAGCCATGAT 60.464 55.000 0.00 0.00 44.26 2.45
2 3 1.078637 GCAGAGTGCAGAGCCATGA 60.079 57.895 0.00 0.00 44.26 3.07
3 4 3.499050 GCAGAGTGCAGAGCCATG 58.501 61.111 0.00 0.00 44.26 3.66
12 13 2.358003 AAGGACGCTGCAGAGTGC 60.358 61.111 29.81 29.81 45.29 4.40
13 14 1.301244 ACAAGGACGCTGCAGAGTG 60.301 57.895 28.44 15.42 35.66 3.51
14 15 1.301244 CACAAGGACGCTGCAGAGT 60.301 57.895 23.81 23.81 0.00 3.24
15 16 2.675056 GCACAAGGACGCTGCAGAG 61.675 63.158 20.43 18.36 0.00 3.35
90 91 1.519455 CTCGCTTCTGCCTTACCCG 60.519 63.158 0.00 0.00 35.36 5.28
94 95 1.156736 GCAAACTCGCTTCTGCCTTA 58.843 50.000 0.00 0.00 35.36 2.69
125 126 2.031465 TTCGTTTGACTCGGGCCC 59.969 61.111 13.57 13.57 0.00 5.80
126 127 1.566018 CTGTTCGTTTGACTCGGGCC 61.566 60.000 0.00 0.00 0.00 5.80
127 128 1.566018 CCTGTTCGTTTGACTCGGGC 61.566 60.000 0.00 0.00 0.00 6.13
128 129 0.949105 CCCTGTTCGTTTGACTCGGG 60.949 60.000 0.00 0.00 0.00 5.14
129 130 0.032952 TCCCTGTTCGTTTGACTCGG 59.967 55.000 0.00 0.00 0.00 4.63
130 131 1.137513 GTCCCTGTTCGTTTGACTCG 58.862 55.000 0.00 0.00 0.00 4.18
131 132 2.135933 CTGTCCCTGTTCGTTTGACTC 58.864 52.381 0.00 0.00 0.00 3.36
132 133 1.810412 GCTGTCCCTGTTCGTTTGACT 60.810 52.381 0.00 0.00 0.00 3.41
133 134 0.586802 GCTGTCCCTGTTCGTTTGAC 59.413 55.000 0.00 0.00 0.00 3.18
134 135 0.878523 CGCTGTCCCTGTTCGTTTGA 60.879 55.000 0.00 0.00 0.00 2.69
140 148 1.569479 GAGCAACGCTGTCCCTGTTC 61.569 60.000 0.00 0.00 39.88 3.18
157 165 2.482336 CGATATCACCGGTGAGAGAGAG 59.518 54.545 37.98 22.87 43.61 3.20
158 166 2.495084 CGATATCACCGGTGAGAGAGA 58.505 52.381 37.98 22.14 43.61 3.10
159 167 1.537638 CCGATATCACCGGTGAGAGAG 59.462 57.143 37.98 29.30 43.61 3.20
160 168 1.605753 CCGATATCACCGGTGAGAGA 58.394 55.000 37.98 26.76 43.61 3.10
187 195 1.195115 ACTACATGTGATCCTGCCGT 58.805 50.000 9.11 0.00 0.00 5.68
198 206 3.587797 CACGAAGGTGGTACTACATGT 57.412 47.619 11.80 2.69 40.58 3.21
210 218 4.733523 GCATTTTGACTTTGACACGAAGGT 60.734 41.667 0.00 0.00 0.00 3.50
262 271 1.959985 CTATCGATGGCCTGTCTGAGT 59.040 52.381 8.54 0.00 0.00 3.41
263 272 1.959985 ACTATCGATGGCCTGTCTGAG 59.040 52.381 8.54 0.00 0.00 3.35
264 273 2.073252 ACTATCGATGGCCTGTCTGA 57.927 50.000 8.54 5.17 0.00 3.27
265 274 2.477825 CAACTATCGATGGCCTGTCTG 58.522 52.381 8.54 0.00 0.00 3.51
266 275 1.414181 CCAACTATCGATGGCCTGTCT 59.586 52.381 8.54 0.00 0.00 3.41
277 2293 5.163550 TGGTCTTCACTGTATCCAACTATCG 60.164 44.000 0.00 0.00 0.00 2.92
299 2315 3.663176 CGTGCCTTGCCTGTGTGG 61.663 66.667 0.00 0.00 39.35 4.17
308 2324 2.954684 TACTCCCTGCCGTGCCTTG 61.955 63.158 0.00 0.00 0.00 3.61
309 2325 2.606519 TACTCCCTGCCGTGCCTT 60.607 61.111 0.00 0.00 0.00 4.35
310 2326 3.391382 GTACTCCCTGCCGTGCCT 61.391 66.667 0.00 0.00 0.00 4.75
311 2327 4.814294 CGTACTCCCTGCCGTGCC 62.814 72.222 0.00 0.00 0.00 5.01
327 2343 4.827087 AGTGGAGCTCATGCCGCG 62.827 66.667 17.19 0.00 39.60 6.46
353 2369 0.037232 TGTGTGTGTGTGTCGTTGGA 60.037 50.000 0.00 0.00 0.00 3.53
354 2370 0.096281 GTGTGTGTGTGTGTCGTTGG 59.904 55.000 0.00 0.00 0.00 3.77
360 2376 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
361 2377 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
362 2378 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
363 2379 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
364 2380 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
365 2381 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
366 2382 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
367 2383 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
368 2384 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
369 2385 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
370 2386 1.819928 ATGTGTGTGTGTGTGTGTGT 58.180 45.000 0.00 0.00 0.00 3.72
371 2387 2.161211 TGAATGTGTGTGTGTGTGTGTG 59.839 45.455 0.00 0.00 0.00 3.82
372 2388 2.419673 CTGAATGTGTGTGTGTGTGTGT 59.580 45.455 0.00 0.00 0.00 3.72
373 2389 2.223317 CCTGAATGTGTGTGTGTGTGTG 60.223 50.000 0.00 0.00 0.00 3.82
374 2390 2.016318 CCTGAATGTGTGTGTGTGTGT 58.984 47.619 0.00 0.00 0.00 3.72
375 2391 2.016318 ACCTGAATGTGTGTGTGTGTG 58.984 47.619 0.00 0.00 0.00 3.82
376 2392 2.418368 ACCTGAATGTGTGTGTGTGT 57.582 45.000 0.00 0.00 0.00 3.72
383 2399 2.293955 TGCATGTCAACCTGAATGTGTG 59.706 45.455 0.00 0.00 0.00 3.82
385 2401 2.293955 TGTGCATGTCAACCTGAATGTG 59.706 45.455 0.00 0.00 0.00 3.21
390 2406 0.764271 TCCTGTGCATGTCAACCTGA 59.236 50.000 0.00 0.00 0.00 3.86
398 2414 3.254166 GTCTGAAAATGTCCTGTGCATGT 59.746 43.478 0.00 0.00 0.00 3.21
409 2425 1.499007 AGGGTGGTGGTCTGAAAATGT 59.501 47.619 0.00 0.00 0.00 2.71
421 2437 3.322254 CCTGTTATCTAGCTAGGGTGGTG 59.678 52.174 20.58 7.61 0.00 4.17
454 2470 4.911514 TGAAACTTAACAAGAGCAACCC 57.088 40.909 0.00 0.00 0.00 4.11
462 2478 4.851558 GGTTAGCGCATGAAACTTAACAAG 59.148 41.667 11.47 0.00 0.00 3.16
463 2479 4.276183 TGGTTAGCGCATGAAACTTAACAA 59.724 37.500 11.47 0.00 0.00 2.83
464 2480 3.815962 TGGTTAGCGCATGAAACTTAACA 59.184 39.130 11.47 0.00 0.00 2.41
465 2481 4.413495 TGGTTAGCGCATGAAACTTAAC 57.587 40.909 11.47 6.77 0.00 2.01
466 2482 4.611807 CGTTGGTTAGCGCATGAAACTTAA 60.612 41.667 11.47 5.79 0.00 1.85
467 2483 3.120477 CGTTGGTTAGCGCATGAAACTTA 60.120 43.478 11.47 0.00 0.00 2.24
468 2484 2.350388 CGTTGGTTAGCGCATGAAACTT 60.350 45.455 11.47 0.00 0.00 2.66
469 2485 1.196808 CGTTGGTTAGCGCATGAAACT 59.803 47.619 11.47 0.00 0.00 2.66
470 2486 1.602191 CGTTGGTTAGCGCATGAAAC 58.398 50.000 11.47 8.28 0.00 2.78
478 2494 1.080298 TATGGTTGCGTTGGTTAGCG 58.920 50.000 0.00 0.00 35.87 4.26
479 2495 2.486592 ACTTATGGTTGCGTTGGTTAGC 59.513 45.455 0.00 0.00 0.00 3.09
480 2496 3.126343 GGACTTATGGTTGCGTTGGTTAG 59.874 47.826 0.00 0.00 0.00 2.34
481 2497 3.075884 GGACTTATGGTTGCGTTGGTTA 58.924 45.455 0.00 0.00 0.00 2.85
482 2498 1.883926 GGACTTATGGTTGCGTTGGTT 59.116 47.619 0.00 0.00 0.00 3.67
483 2499 1.202830 TGGACTTATGGTTGCGTTGGT 60.203 47.619 0.00 0.00 0.00 3.67
484 2500 1.529226 TGGACTTATGGTTGCGTTGG 58.471 50.000 0.00 0.00 0.00 3.77
485 2501 3.004315 AGTTTGGACTTATGGTTGCGTTG 59.996 43.478 0.00 0.00 29.87 4.10
486 2502 3.219281 AGTTTGGACTTATGGTTGCGTT 58.781 40.909 0.00 0.00 29.87 4.84
487 2503 2.858745 AGTTTGGACTTATGGTTGCGT 58.141 42.857 0.00 0.00 29.87 5.24
488 2504 5.106317 ACATTAGTTTGGACTTATGGTTGCG 60.106 40.000 9.48 0.00 43.67 4.85
489 2505 6.267496 ACATTAGTTTGGACTTATGGTTGC 57.733 37.500 9.48 0.00 43.67 4.17
492 2508 9.020731 CCTTTTACATTAGTTTGGACTTATGGT 57.979 33.333 9.48 0.00 43.67 3.55
493 2509 7.973944 GCCTTTTACATTAGTTTGGACTTATGG 59.026 37.037 9.48 0.00 43.67 2.74
494 2510 8.739972 AGCCTTTTACATTAGTTTGGACTTATG 58.260 33.333 4.54 4.54 44.47 1.90
495 2511 8.879427 AGCCTTTTACATTAGTTTGGACTTAT 57.121 30.769 0.00 0.00 37.33 1.73
496 2512 9.444600 CTAGCCTTTTACATTAGTTTGGACTTA 57.555 33.333 0.00 0.00 37.33 2.24
497 2513 7.942894 ACTAGCCTTTTACATTAGTTTGGACTT 59.057 33.333 0.00 0.00 37.33 3.01
498 2514 7.390718 CACTAGCCTTTTACATTAGTTTGGACT 59.609 37.037 0.00 0.00 39.97 3.85
499 2515 7.527457 CACTAGCCTTTTACATTAGTTTGGAC 58.473 38.462 0.00 0.00 0.00 4.02
500 2516 6.150474 GCACTAGCCTTTTACATTAGTTTGGA 59.850 38.462 0.00 0.00 33.58 3.53
501 2517 6.072175 TGCACTAGCCTTTTACATTAGTTTGG 60.072 38.462 0.00 0.00 41.13 3.28
502 2518 6.908825 TGCACTAGCCTTTTACATTAGTTTG 58.091 36.000 0.00 0.00 41.13 2.93
503 2519 7.519032 TTGCACTAGCCTTTTACATTAGTTT 57.481 32.000 0.00 0.00 41.13 2.66
504 2520 7.148069 GGATTGCACTAGCCTTTTACATTAGTT 60.148 37.037 0.00 0.00 41.13 2.24
505 2521 6.318900 GGATTGCACTAGCCTTTTACATTAGT 59.681 38.462 0.00 0.00 41.13 2.24
506 2522 6.318648 TGGATTGCACTAGCCTTTTACATTAG 59.681 38.462 0.00 0.00 41.13 1.73
507 2523 6.094881 GTGGATTGCACTAGCCTTTTACATTA 59.905 38.462 0.45 0.00 41.13 1.90
508 2524 5.016173 TGGATTGCACTAGCCTTTTACATT 58.984 37.500 0.00 0.00 41.13 2.71
509 2525 4.399303 GTGGATTGCACTAGCCTTTTACAT 59.601 41.667 0.45 0.00 41.13 2.29
510 2526 3.756434 GTGGATTGCACTAGCCTTTTACA 59.244 43.478 0.45 0.00 41.13 2.41
511 2527 3.756434 TGTGGATTGCACTAGCCTTTTAC 59.244 43.478 9.80 0.00 41.13 2.01
512 2528 3.756434 GTGTGGATTGCACTAGCCTTTTA 59.244 43.478 9.80 0.00 41.13 1.52
513 2529 2.558359 GTGTGGATTGCACTAGCCTTTT 59.442 45.455 9.80 0.00 41.13 2.27
514 2530 2.162681 GTGTGGATTGCACTAGCCTTT 58.837 47.619 9.80 0.00 41.13 3.11
515 2531 1.073763 TGTGTGGATTGCACTAGCCTT 59.926 47.619 9.80 0.00 41.13 4.35
516 2532 0.692476 TGTGTGGATTGCACTAGCCT 59.308 50.000 9.80 0.00 41.13 4.58
517 2533 1.755179 ATGTGTGGATTGCACTAGCC 58.245 50.000 9.80 0.00 41.13 3.93
518 2534 3.270027 TGTATGTGTGGATTGCACTAGC 58.730 45.455 9.80 1.32 42.57 3.42
519 2535 6.201615 CAGTATGTATGTGTGGATTGCACTAG 59.798 42.308 9.80 0.00 37.70 2.57
520 2536 6.048509 CAGTATGTATGTGTGGATTGCACTA 58.951 40.000 9.80 0.00 37.70 2.74
521 2537 4.877823 CAGTATGTATGTGTGGATTGCACT 59.122 41.667 9.80 0.00 37.70 4.40
522 2538 5.160699 CAGTATGTATGTGTGGATTGCAC 57.839 43.478 0.72 0.72 37.37 4.57
535 2551 8.773619 CCTGTCAGAGGGTGTTACAGTATGTAT 61.774 44.444 0.00 0.00 44.41 2.29
536 2552 7.530162 CCTGTCAGAGGGTGTTACAGTATGTA 61.530 46.154 0.00 0.00 43.40 2.29
537 2553 6.794954 CCTGTCAGAGGGTGTTACAGTATGT 61.795 48.000 0.00 0.00 45.94 2.29
538 2554 4.382040 CCTGTCAGAGGGTGTTACAGTATG 60.382 50.000 0.00 0.00 39.53 2.39
539 2555 3.769844 CCTGTCAGAGGGTGTTACAGTAT 59.230 47.826 0.00 0.00 38.36 2.12
540 2556 3.162666 CCTGTCAGAGGGTGTTACAGTA 58.837 50.000 0.00 0.00 38.36 2.74
541 2557 1.971357 CCTGTCAGAGGGTGTTACAGT 59.029 52.381 0.00 0.00 38.36 3.55
542 2558 2.751166 CCTGTCAGAGGGTGTTACAG 57.249 55.000 0.00 0.00 38.36 2.74
551 2567 1.974236 ACTTGTCTTCCCTGTCAGAGG 59.026 52.381 0.00 1.10 42.38 3.69
552 2568 2.630098 TGACTTGTCTTCCCTGTCAGAG 59.370 50.000 0.00 0.00 33.45 3.35
553 2569 2.677914 TGACTTGTCTTCCCTGTCAGA 58.322 47.619 0.00 0.00 33.45 3.27
554 2570 3.134458 GTTGACTTGTCTTCCCTGTCAG 58.866 50.000 2.35 0.00 38.60 3.51
555 2571 2.503765 TGTTGACTTGTCTTCCCTGTCA 59.496 45.455 2.35 0.00 36.10 3.58
556 2572 2.872858 GTGTTGACTTGTCTTCCCTGTC 59.127 50.000 2.35 0.00 0.00 3.51
557 2573 2.741878 CGTGTTGACTTGTCTTCCCTGT 60.742 50.000 2.35 0.00 0.00 4.00
558 2574 1.867233 CGTGTTGACTTGTCTTCCCTG 59.133 52.381 2.35 0.00 0.00 4.45
559 2575 1.485066 ACGTGTTGACTTGTCTTCCCT 59.515 47.619 2.35 0.00 0.00 4.20
560 2576 1.597663 CACGTGTTGACTTGTCTTCCC 59.402 52.381 7.58 0.00 0.00 3.97
561 2577 1.003866 GCACGTGTTGACTTGTCTTCC 60.004 52.381 18.38 0.00 0.00 3.46
562 2578 1.663643 TGCACGTGTTGACTTGTCTTC 59.336 47.619 18.38 0.00 0.00 2.87
563 2579 1.732941 TGCACGTGTTGACTTGTCTT 58.267 45.000 18.38 0.00 0.00 3.01
564 2580 1.396996 GTTGCACGTGTTGACTTGTCT 59.603 47.619 18.38 0.00 0.00 3.41
565 2581 1.531058 GGTTGCACGTGTTGACTTGTC 60.531 52.381 18.38 0.00 0.00 3.18
566 2582 0.450184 GGTTGCACGTGTTGACTTGT 59.550 50.000 18.38 0.00 0.00 3.16
567 2583 0.588730 CGGTTGCACGTGTTGACTTG 60.589 55.000 18.38 6.88 0.00 3.16
568 2584 1.711060 CCGGTTGCACGTGTTGACTT 61.711 55.000 18.38 0.00 0.00 3.01
569 2585 2.177580 CCGGTTGCACGTGTTGACT 61.178 57.895 18.38 0.00 0.00 3.41
570 2586 1.707239 TTCCGGTTGCACGTGTTGAC 61.707 55.000 18.38 12.75 0.00 3.18
571 2587 1.433053 CTTCCGGTTGCACGTGTTGA 61.433 55.000 18.38 0.13 0.00 3.18
572 2588 1.010125 CTTCCGGTTGCACGTGTTG 60.010 57.895 18.38 2.70 0.00 3.33
573 2589 1.153329 TCTTCCGGTTGCACGTGTT 60.153 52.632 18.38 0.00 0.00 3.32
574 2590 1.594293 CTCTTCCGGTTGCACGTGT 60.594 57.895 18.38 0.00 0.00 4.49
575 2591 1.284982 CTCTCTTCCGGTTGCACGTG 61.285 60.000 12.28 12.28 0.00 4.49
576 2592 1.006102 CTCTCTTCCGGTTGCACGT 60.006 57.895 0.00 0.00 0.00 4.49
577 2593 2.383527 GCTCTCTTCCGGTTGCACG 61.384 63.158 0.00 0.00 0.00 5.34
578 2594 2.383527 CGCTCTCTTCCGGTTGCAC 61.384 63.158 0.00 0.00 0.00 4.57
579 2595 2.048222 CGCTCTCTTCCGGTTGCA 60.048 61.111 0.00 0.00 0.00 4.08
580 2596 2.095252 GTCGCTCTCTTCCGGTTGC 61.095 63.158 0.00 0.00 0.00 4.17
581 2597 1.801913 CGTCGCTCTCTTCCGGTTG 60.802 63.158 0.00 0.00 0.00 3.77
582 2598 2.567049 CGTCGCTCTCTTCCGGTT 59.433 61.111 0.00 0.00 0.00 4.44
583 2599 3.441290 CCGTCGCTCTCTTCCGGT 61.441 66.667 0.00 0.00 34.10 5.28
584 2600 4.856607 GCCGTCGCTCTCTTCCGG 62.857 72.222 0.00 0.00 41.50 5.14
604 2620 5.444586 TTTGTATCATACGTGAGTTTCGC 57.555 39.130 0.00 0.00 46.40 4.70
605 2621 5.005394 CCCTTTGTATCATACGTGAGTTTCG 59.995 44.000 0.00 0.00 46.40 3.46
606 2622 5.293569 CCCCTTTGTATCATACGTGAGTTTC 59.706 44.000 0.00 0.00 46.40 2.78
607 2623 5.183228 CCCCTTTGTATCATACGTGAGTTT 58.817 41.667 0.00 0.00 46.40 2.66
608 2624 4.383770 CCCCCTTTGTATCATACGTGAGTT 60.384 45.833 0.00 0.00 46.40 3.01
610 2626 3.728845 CCCCCTTTGTATCATACGTGAG 58.271 50.000 0.00 0.00 37.87 3.51
611 2627 2.158871 GCCCCCTTTGTATCATACGTGA 60.159 50.000 0.00 0.00 39.04 4.35
612 2628 2.218603 GCCCCCTTTGTATCATACGTG 58.781 52.381 0.00 0.00 0.00 4.49
613 2629 1.841277 TGCCCCCTTTGTATCATACGT 59.159 47.619 0.00 0.00 0.00 3.57
614 2630 2.616842 GTTGCCCCCTTTGTATCATACG 59.383 50.000 0.00 0.00 0.00 3.06
615 2631 2.956333 GGTTGCCCCCTTTGTATCATAC 59.044 50.000 0.00 0.00 0.00 2.39
616 2632 2.583101 TGGTTGCCCCCTTTGTATCATA 59.417 45.455 0.00 0.00 0.00 2.15
617 2633 1.360852 TGGTTGCCCCCTTTGTATCAT 59.639 47.619 0.00 0.00 0.00 2.45
618 2634 0.780637 TGGTTGCCCCCTTTGTATCA 59.219 50.000 0.00 0.00 0.00 2.15
619 2635 2.031870 GATGGTTGCCCCCTTTGTATC 58.968 52.381 0.00 0.00 0.00 2.24
620 2636 1.360852 TGATGGTTGCCCCCTTTGTAT 59.639 47.619 0.00 0.00 0.00 2.29
621 2637 0.780637 TGATGGTTGCCCCCTTTGTA 59.219 50.000 0.00 0.00 0.00 2.41
622 2638 0.105246 TTGATGGTTGCCCCCTTTGT 60.105 50.000 0.00 0.00 0.00 2.83
623 2639 1.278537 ATTGATGGTTGCCCCCTTTG 58.721 50.000 0.00 0.00 0.00 2.77
624 2640 2.043307 AATTGATGGTTGCCCCCTTT 57.957 45.000 0.00 0.00 0.00 3.11
625 2641 2.043307 AAATTGATGGTTGCCCCCTT 57.957 45.000 0.00 0.00 0.00 3.95
626 2642 2.043307 AAAATTGATGGTTGCCCCCT 57.957 45.000 0.00 0.00 0.00 4.79
627 2643 2.877097 AAAAATTGATGGTTGCCCCC 57.123 45.000 0.00 0.00 0.00 5.40
628 2644 4.646572 TGTTAAAAATTGATGGTTGCCCC 58.353 39.130 0.00 0.00 0.00 5.80
629 2645 6.625873 TTTGTTAAAAATTGATGGTTGCCC 57.374 33.333 0.00 0.00 0.00 5.36
630 2646 7.114670 GCAATTTGTTAAAAATTGATGGTTGCC 59.885 33.333 20.97 1.14 45.59 4.52
631 2647 7.149160 CGCAATTTGTTAAAAATTGATGGTTGC 60.149 33.333 20.97 7.24 45.59 4.17
632 2648 7.149160 GCGCAATTTGTTAAAAATTGATGGTTG 60.149 33.333 20.97 6.81 45.59 3.77
633 2649 6.855403 GCGCAATTTGTTAAAAATTGATGGTT 59.145 30.769 20.97 0.00 45.59 3.67
634 2650 6.017605 TGCGCAATTTGTTAAAAATTGATGGT 60.018 30.769 20.97 0.00 45.59 3.55
635 2651 6.369005 TGCGCAATTTGTTAAAAATTGATGG 58.631 32.000 20.97 11.60 45.59 3.51
636 2652 7.408500 GCTTGCGCAATTTGTTAAAAATTGATG 60.408 33.333 25.26 14.00 45.59 3.07
637 2653 6.578172 GCTTGCGCAATTTGTTAAAAATTGAT 59.422 30.769 25.26 0.00 45.59 2.57
638 2654 5.906285 GCTTGCGCAATTTGTTAAAAATTGA 59.094 32.000 25.26 1.47 45.59 2.57
639 2655 5.115321 GGCTTGCGCAATTTGTTAAAAATTG 59.885 36.000 25.26 14.42 45.53 2.32
640 2656 5.211454 GGCTTGCGCAATTTGTTAAAAATT 58.789 33.333 25.26 0.00 38.10 1.82
641 2657 4.274459 TGGCTTGCGCAATTTGTTAAAAAT 59.726 33.333 25.26 0.00 38.10 1.82
642 2658 3.623060 TGGCTTGCGCAATTTGTTAAAAA 59.377 34.783 25.26 0.00 38.10 1.94
643 2659 3.198068 TGGCTTGCGCAATTTGTTAAAA 58.802 36.364 25.26 0.00 38.10 1.52
644 2660 2.799412 CTGGCTTGCGCAATTTGTTAAA 59.201 40.909 25.26 0.00 38.10 1.52
645 2661 2.402305 CTGGCTTGCGCAATTTGTTAA 58.598 42.857 25.26 0.00 38.10 2.01
646 2662 1.336702 CCTGGCTTGCGCAATTTGTTA 60.337 47.619 25.26 6.40 38.10 2.41
647 2663 0.600782 CCTGGCTTGCGCAATTTGTT 60.601 50.000 25.26 0.00 38.10 2.83
648 2664 1.005867 CCTGGCTTGCGCAATTTGT 60.006 52.632 25.26 0.00 38.10 2.83
649 2665 1.010419 GTCCTGGCTTGCGCAATTTG 61.010 55.000 25.26 13.59 38.10 2.32
650 2666 1.181098 AGTCCTGGCTTGCGCAATTT 61.181 50.000 25.26 0.31 38.10 1.82
651 2667 1.181098 AAGTCCTGGCTTGCGCAATT 61.181 50.000 25.26 9.52 38.10 2.32
652 2668 1.604593 AAGTCCTGGCTTGCGCAAT 60.605 52.632 25.26 2.48 38.10 3.56
653 2669 2.203337 AAGTCCTGGCTTGCGCAA 60.203 55.556 23.48 23.48 38.10 4.85
654 2670 2.956799 TTCAAGTCCTGGCTTGCGCA 62.957 55.000 5.66 5.66 43.92 6.09
655 2671 2.260869 TTCAAGTCCTGGCTTGCGC 61.261 57.895 19.53 0.00 43.92 6.09
656 2672 0.886490 AGTTCAAGTCCTGGCTTGCG 60.886 55.000 19.53 4.70 43.92 4.85
657 2673 0.877743 GAGTTCAAGTCCTGGCTTGC 59.122 55.000 19.53 10.92 43.92 4.01
658 2674 2.260844 TGAGTTCAAGTCCTGGCTTG 57.739 50.000 18.74 18.74 45.18 4.01
659 2675 2.856222 CTTGAGTTCAAGTCCTGGCTT 58.144 47.619 12.61 0.00 46.11 4.35
660 2676 2.557920 CTTGAGTTCAAGTCCTGGCT 57.442 50.000 12.61 0.00 46.11 4.75
662 2678 1.884067 GGCCTTGAGTTCAAGTCCTGG 60.884 57.143 17.86 6.86 45.65 4.45
663 2679 1.528129 GGCCTTGAGTTCAAGTCCTG 58.472 55.000 17.86 6.38 45.65 3.86
669 2685 2.639839 AGAGCTAAGGCCTTGAGTTCAA 59.360 45.455 28.77 4.85 39.73 2.69
670 2686 2.027745 CAGAGCTAAGGCCTTGAGTTCA 60.028 50.000 28.77 5.66 39.73 3.18
671 2687 2.234908 TCAGAGCTAAGGCCTTGAGTTC 59.765 50.000 28.77 23.73 39.73 3.01
672 2688 2.260822 TCAGAGCTAAGGCCTTGAGTT 58.739 47.619 28.77 17.71 39.73 3.01
673 2689 1.944177 TCAGAGCTAAGGCCTTGAGT 58.056 50.000 28.77 11.64 39.73 3.41
674 2690 4.282957 TGATATCAGAGCTAAGGCCTTGAG 59.717 45.833 28.77 20.16 39.73 3.02
675 2691 4.226384 TGATATCAGAGCTAAGGCCTTGA 58.774 43.478 28.77 16.64 39.73 3.02
676 2692 4.613925 TGATATCAGAGCTAAGGCCTTG 57.386 45.455 28.77 18.05 39.73 3.61
677 2693 4.596643 ACATGATATCAGAGCTAAGGCCTT 59.403 41.667 24.18 24.18 39.73 4.35
678 2694 4.166539 ACATGATATCAGAGCTAAGGCCT 58.833 43.478 11.78 0.00 39.73 5.19
679 2695 4.550076 ACATGATATCAGAGCTAAGGCC 57.450 45.455 11.78 0.00 39.73 5.19
680 2696 6.091986 GCTTAACATGATATCAGAGCTAAGGC 59.908 42.308 20.95 14.41 39.06 4.35
681 2697 7.385267 AGCTTAACATGATATCAGAGCTAAGG 58.615 38.462 20.95 10.96 37.45 2.69
682 2698 8.830201 AAGCTTAACATGATATCAGAGCTAAG 57.170 34.615 20.76 19.37 38.19 2.18
683 2699 8.424133 TGAAGCTTAACATGATATCAGAGCTAA 58.576 33.333 20.76 13.19 38.19 3.09
684 2700 7.955918 TGAAGCTTAACATGATATCAGAGCTA 58.044 34.615 20.76 10.74 38.19 3.32
685 2701 6.824553 TGAAGCTTAACATGATATCAGAGCT 58.175 36.000 11.78 15.36 40.64 4.09
686 2702 7.519843 CATGAAGCTTAACATGATATCAGAGC 58.480 38.462 18.72 13.63 44.28 4.09
687 2703 7.172703 TGCATGAAGCTTAACATGATATCAGAG 59.827 37.037 24.80 8.78 44.28 3.35
688 2704 6.993902 TGCATGAAGCTTAACATGATATCAGA 59.006 34.615 24.80 0.00 44.28 3.27
689 2705 7.041303 AGTGCATGAAGCTTAACATGATATCAG 60.041 37.037 24.80 6.15 44.28 2.90
690 2706 6.769341 AGTGCATGAAGCTTAACATGATATCA 59.231 34.615 24.80 8.10 44.28 2.15
691 2707 7.199541 AGTGCATGAAGCTTAACATGATATC 57.800 36.000 24.80 12.03 44.28 1.63
692 2708 7.094890 GCTAGTGCATGAAGCTTAACATGATAT 60.095 37.037 24.80 14.38 44.28 1.63
693 2709 6.203530 GCTAGTGCATGAAGCTTAACATGATA 59.796 38.462 24.80 13.68 44.28 2.15
694 2710 5.008415 GCTAGTGCATGAAGCTTAACATGAT 59.992 40.000 24.80 14.89 44.28 2.45
695 2711 4.333649 GCTAGTGCATGAAGCTTAACATGA 59.666 41.667 24.80 11.84 44.28 3.07
696 2712 4.497006 GGCTAGTGCATGAAGCTTAACATG 60.497 45.833 19.04 19.04 45.94 3.21
697 2713 3.629398 GGCTAGTGCATGAAGCTTAACAT 59.371 43.478 14.92 0.00 45.94 2.71
698 2714 3.009723 GGCTAGTGCATGAAGCTTAACA 58.990 45.455 14.92 0.00 45.94 2.41
699 2715 3.009723 TGGCTAGTGCATGAAGCTTAAC 58.990 45.455 14.92 0.00 45.94 2.01
700 2716 3.348647 TGGCTAGTGCATGAAGCTTAA 57.651 42.857 14.92 0.00 45.94 1.85
701 2717 3.009723 GTTGGCTAGTGCATGAAGCTTA 58.990 45.455 14.92 5.14 45.94 3.09
702 2718 1.815003 GTTGGCTAGTGCATGAAGCTT 59.185 47.619 14.92 0.00 45.94 3.74
703 2719 1.457346 GTTGGCTAGTGCATGAAGCT 58.543 50.000 14.92 0.00 45.94 3.74
704 2720 0.097674 CGTTGGCTAGTGCATGAAGC 59.902 55.000 0.00 8.84 45.96 3.86
705 2721 0.097674 GCGTTGGCTAGTGCATGAAG 59.902 55.000 0.00 0.00 41.91 3.02
706 2722 0.605050 TGCGTTGGCTAGTGCATGAA 60.605 50.000 0.00 0.00 41.91 2.57
707 2723 1.003959 TGCGTTGGCTAGTGCATGA 60.004 52.632 0.00 0.00 41.91 3.07
708 2724 1.300971 ACTGCGTTGGCTAGTGCATG 61.301 55.000 0.00 0.00 41.91 4.06
709 2725 1.003355 ACTGCGTTGGCTAGTGCAT 60.003 52.632 0.00 0.00 41.91 3.96
710 2726 1.667830 GACTGCGTTGGCTAGTGCA 60.668 57.895 0.00 0.00 41.91 4.57
711 2727 1.227999 TTGACTGCGTTGGCTAGTGC 61.228 55.000 0.00 0.00 40.82 4.40
712 2728 1.225855 TTTGACTGCGTTGGCTAGTG 58.774 50.000 0.00 0.00 40.82 2.74
713 2729 1.873591 CTTTTGACTGCGTTGGCTAGT 59.126 47.619 0.00 0.00 40.82 2.57
714 2730 1.873591 ACTTTTGACTGCGTTGGCTAG 59.126 47.619 0.00 0.00 40.82 3.42
715 2731 1.871039 GACTTTTGACTGCGTTGGCTA 59.129 47.619 0.00 0.00 40.82 3.93
716 2732 0.663153 GACTTTTGACTGCGTTGGCT 59.337 50.000 0.00 0.00 40.82 4.75
717 2733 0.317854 GGACTTTTGACTGCGTTGGC 60.318 55.000 0.00 0.00 40.52 4.52
718 2734 0.041312 CGGACTTTTGACTGCGTTGG 60.041 55.000 0.00 0.00 0.00 3.77
719 2735 0.934496 TCGGACTTTTGACTGCGTTG 59.066 50.000 0.00 0.00 0.00 4.10
720 2736 1.658994 TTCGGACTTTTGACTGCGTT 58.341 45.000 0.00 0.00 0.00 4.84
721 2737 1.878953 ATTCGGACTTTTGACTGCGT 58.121 45.000 0.00 0.00 0.00 5.24
722 2738 2.969443 AATTCGGACTTTTGACTGCG 57.031 45.000 0.00 0.00 0.00 5.18
723 2739 5.095490 CCATTAATTCGGACTTTTGACTGC 58.905 41.667 0.00 0.00 0.00 4.40
724 2740 6.494893 TCCATTAATTCGGACTTTTGACTG 57.505 37.500 0.00 0.00 0.00 3.51
725 2741 7.309194 CCTTTCCATTAATTCGGACTTTTGACT 60.309 37.037 0.00 0.00 0.00 3.41
726 2742 6.806739 CCTTTCCATTAATTCGGACTTTTGAC 59.193 38.462 0.00 0.00 0.00 3.18
727 2743 6.071616 CCCTTTCCATTAATTCGGACTTTTGA 60.072 38.462 0.00 0.00 0.00 2.69
728 2744 6.099341 CCCTTTCCATTAATTCGGACTTTTG 58.901 40.000 0.00 0.00 0.00 2.44
729 2745 5.337250 GCCCTTTCCATTAATTCGGACTTTT 60.337 40.000 0.00 0.00 0.00 2.27
730 2746 4.159693 GCCCTTTCCATTAATTCGGACTTT 59.840 41.667 0.00 0.00 0.00 2.66
731 2747 3.699538 GCCCTTTCCATTAATTCGGACTT 59.300 43.478 0.00 0.00 0.00 3.01
732 2748 3.053619 AGCCCTTTCCATTAATTCGGACT 60.054 43.478 0.00 0.00 0.00 3.85
733 2749 3.288092 AGCCCTTTCCATTAATTCGGAC 58.712 45.455 0.00 0.00 0.00 4.79
734 2750 3.662759 AGCCCTTTCCATTAATTCGGA 57.337 42.857 0.00 0.00 0.00 4.55
735 2751 4.275936 CACTAGCCCTTTCCATTAATTCGG 59.724 45.833 0.00 0.00 0.00 4.30
736 2752 4.261197 GCACTAGCCCTTTCCATTAATTCG 60.261 45.833 0.00 0.00 33.58 3.34
737 2753 4.644685 TGCACTAGCCCTTTCCATTAATTC 59.355 41.667 0.00 0.00 41.13 2.17
738 2754 4.609301 TGCACTAGCCCTTTCCATTAATT 58.391 39.130 0.00 0.00 41.13 1.40
739 2755 4.249638 TGCACTAGCCCTTTCCATTAAT 57.750 40.909 0.00 0.00 41.13 1.40
740 2756 3.730215 TGCACTAGCCCTTTCCATTAA 57.270 42.857 0.00 0.00 41.13 1.40
741 2757 3.730215 TTGCACTAGCCCTTTCCATTA 57.270 42.857 0.00 0.00 41.13 1.90
742 2758 2.603075 TTGCACTAGCCCTTTCCATT 57.397 45.000 0.00 0.00 41.13 3.16
743 2759 2.659428 GATTGCACTAGCCCTTTCCAT 58.341 47.619 0.00 0.00 41.13 3.41
744 2760 1.340991 GGATTGCACTAGCCCTTTCCA 60.341 52.381 0.00 0.00 41.13 3.53
745 2761 1.340991 TGGATTGCACTAGCCCTTTCC 60.341 52.381 0.00 0.00 41.13 3.13
746 2762 1.745653 GTGGATTGCACTAGCCCTTTC 59.254 52.381 0.45 0.00 41.13 2.62
747 2763 1.075374 TGTGGATTGCACTAGCCCTTT 59.925 47.619 9.80 0.00 41.13 3.11
748 2764 0.698238 TGTGGATTGCACTAGCCCTT 59.302 50.000 9.80 0.00 41.13 3.95
749 2765 0.921896 ATGTGGATTGCACTAGCCCT 59.078 50.000 9.80 0.00 41.13 5.19
750 2766 2.638480 TATGTGGATTGCACTAGCCC 57.362 50.000 9.80 0.00 41.13 5.19
751 2767 4.003648 GGTATATGTGGATTGCACTAGCC 58.996 47.826 9.80 0.00 41.13 3.93
752 2768 3.679980 CGGTATATGTGGATTGCACTAGC 59.320 47.826 9.80 3.10 42.57 3.42
753 2769 4.883083 ACGGTATATGTGGATTGCACTAG 58.117 43.478 9.80 0.00 0.00 2.57
754 2770 4.948341 ACGGTATATGTGGATTGCACTA 57.052 40.909 9.80 0.72 0.00 2.74
755 2771 3.838244 ACGGTATATGTGGATTGCACT 57.162 42.857 9.80 0.00 0.00 4.40
756 2772 4.812091 TGTTACGGTATATGTGGATTGCAC 59.188 41.667 0.72 0.72 0.00 4.57
757 2773 5.024785 TGTTACGGTATATGTGGATTGCA 57.975 39.130 0.00 0.00 0.00 4.08
758 2774 5.526111 AGTTGTTACGGTATATGTGGATTGC 59.474 40.000 0.00 0.00 0.00 3.56
759 2775 6.984474 AGAGTTGTTACGGTATATGTGGATTG 59.016 38.462 0.00 0.00 0.00 2.67
760 2776 6.984474 CAGAGTTGTTACGGTATATGTGGATT 59.016 38.462 0.00 0.00 0.00 3.01
761 2777 6.322969 TCAGAGTTGTTACGGTATATGTGGAT 59.677 38.462 0.00 0.00 0.00 3.41
762 2778 5.653330 TCAGAGTTGTTACGGTATATGTGGA 59.347 40.000 0.00 0.00 0.00 4.02
763 2779 5.747197 GTCAGAGTTGTTACGGTATATGTGG 59.253 44.000 0.00 0.00 0.00 4.17
764 2780 6.561614 AGTCAGAGTTGTTACGGTATATGTG 58.438 40.000 0.00 0.00 0.00 3.21
765 2781 6.770746 AGTCAGAGTTGTTACGGTATATGT 57.229 37.500 0.00 0.00 0.00 2.29
766 2782 7.745155 CGATAGTCAGAGTTGTTACGGTATATG 59.255 40.741 0.00 0.00 0.00 1.78
767 2783 7.094890 CCGATAGTCAGAGTTGTTACGGTATAT 60.095 40.741 0.00 0.00 33.44 0.86
768 2784 6.203530 CCGATAGTCAGAGTTGTTACGGTATA 59.796 42.308 0.00 0.00 33.44 1.47
769 2785 5.008415 CCGATAGTCAGAGTTGTTACGGTAT 59.992 44.000 0.00 0.00 33.44 2.73
770 2786 4.333649 CCGATAGTCAGAGTTGTTACGGTA 59.666 45.833 0.00 0.00 33.44 4.02
771 2787 3.128242 CCGATAGTCAGAGTTGTTACGGT 59.872 47.826 0.00 0.00 33.44 4.83
772 2788 3.692576 CCGATAGTCAGAGTTGTTACGG 58.307 50.000 0.00 0.00 0.00 4.02
773 2789 3.106672 GCCGATAGTCAGAGTTGTTACG 58.893 50.000 0.00 0.00 0.00 3.18
774 2790 3.130693 AGGCCGATAGTCAGAGTTGTTAC 59.869 47.826 0.00 0.00 0.00 2.50
775 2791 3.362706 AGGCCGATAGTCAGAGTTGTTA 58.637 45.455 0.00 0.00 0.00 2.41
776 2792 2.180276 AGGCCGATAGTCAGAGTTGTT 58.820 47.619 0.00 0.00 0.00 2.83
777 2793 1.853963 AGGCCGATAGTCAGAGTTGT 58.146 50.000 0.00 0.00 0.00 3.32
778 2794 2.969628 AAGGCCGATAGTCAGAGTTG 57.030 50.000 0.00 0.00 0.00 3.16
779 2795 3.983044 AAAAGGCCGATAGTCAGAGTT 57.017 42.857 0.00 0.00 0.00 3.01
780 2796 3.600388 CAAAAAGGCCGATAGTCAGAGT 58.400 45.455 0.00 0.00 0.00 3.24
781 2797 2.939103 CCAAAAAGGCCGATAGTCAGAG 59.061 50.000 0.00 0.00 0.00 3.35
782 2798 2.355716 CCCAAAAAGGCCGATAGTCAGA 60.356 50.000 0.00 0.00 35.39 3.27
783 2799 2.017049 CCCAAAAAGGCCGATAGTCAG 58.983 52.381 0.00 0.00 35.39 3.51
837 2874 2.045926 AGCAGAATGACACCGCCC 60.046 61.111 0.00 0.00 39.69 6.13
842 2879 1.375908 TCCGCCAGCAGAATGACAC 60.376 57.895 0.00 0.00 39.69 3.67
863 2900 0.177604 AGAGAAGCATCAAGAGCCCG 59.822 55.000 0.00 0.00 0.00 6.13
881 2918 1.808945 CAGGCAAGAAACCAGCAGTAG 59.191 52.381 0.00 0.00 0.00 2.57
883 2920 0.825010 CCAGGCAAGAAACCAGCAGT 60.825 55.000 0.00 0.00 0.00 4.40
890 2927 1.239347 GAGTGACCCAGGCAAGAAAC 58.761 55.000 0.00 0.00 0.00 2.78
899 2936 1.248486 TCAAGACTCGAGTGACCCAG 58.752 55.000 25.58 6.74 0.00 4.45
901 2938 1.336980 GGTTCAAGACTCGAGTGACCC 60.337 57.143 25.58 12.53 0.00 4.46
909 2946 3.090037 TCTAGAAGGGGTTCAAGACTCG 58.910 50.000 0.00 0.00 0.00 4.18
910 2947 4.283722 TGTTCTAGAAGGGGTTCAAGACTC 59.716 45.833 5.12 0.00 0.00 3.36
911 2948 4.232091 TGTTCTAGAAGGGGTTCAAGACT 58.768 43.478 5.12 0.00 0.00 3.24
912 2949 4.283722 TCTGTTCTAGAAGGGGTTCAAGAC 59.716 45.833 5.12 0.00 30.84 3.01
913 2950 4.489737 TCTGTTCTAGAAGGGGTTCAAGA 58.510 43.478 5.12 0.00 30.84 3.02
914 2951 4.528596 TCTCTGTTCTAGAAGGGGTTCAAG 59.471 45.833 5.12 1.15 34.32 3.02
915 2952 4.283722 GTCTCTGTTCTAGAAGGGGTTCAA 59.716 45.833 5.12 0.00 34.32 2.69
916 2953 3.833070 GTCTCTGTTCTAGAAGGGGTTCA 59.167 47.826 5.12 0.00 34.32 3.18
917 2954 4.090819 AGTCTCTGTTCTAGAAGGGGTTC 58.909 47.826 5.12 0.00 34.32 3.62
918 2955 4.134933 AGTCTCTGTTCTAGAAGGGGTT 57.865 45.455 5.12 0.00 34.32 4.11
919 2956 3.837399 AGTCTCTGTTCTAGAAGGGGT 57.163 47.619 5.12 0.00 34.32 4.95
920 2957 4.601084 TGTAGTCTCTGTTCTAGAAGGGG 58.399 47.826 5.12 2.16 34.32 4.79
921 2958 7.883391 TTATGTAGTCTCTGTTCTAGAAGGG 57.117 40.000 5.12 1.89 34.32 3.95
922 2959 8.573035 GGATTATGTAGTCTCTGTTCTAGAAGG 58.427 40.741 5.12 2.26 34.32 3.46
923 2960 9.126151 TGGATTATGTAGTCTCTGTTCTAGAAG 57.874 37.037 5.12 0.00 34.32 2.85
924 2961 9.647918 ATGGATTATGTAGTCTCTGTTCTAGAA 57.352 33.333 0.00 0.00 34.32 2.10
925 2962 9.072375 CATGGATTATGTAGTCTCTGTTCTAGA 57.928 37.037 0.00 0.00 31.92 2.43
926 2963 8.303156 CCATGGATTATGTAGTCTCTGTTCTAG 58.697 40.741 5.56 0.00 34.87 2.43
927 2964 8.004801 TCCATGGATTATGTAGTCTCTGTTCTA 58.995 37.037 11.44 0.00 34.87 2.10
928 2965 6.841229 TCCATGGATTATGTAGTCTCTGTTCT 59.159 38.462 11.44 0.00 34.87 3.01
929 2966 7.055667 TCCATGGATTATGTAGTCTCTGTTC 57.944 40.000 11.44 0.00 34.87 3.18
930 2967 7.448420 CATCCATGGATTATGTAGTCTCTGTT 58.552 38.462 25.20 0.00 34.87 3.16
931 2968 7.002250 CATCCATGGATTATGTAGTCTCTGT 57.998 40.000 25.20 0.00 34.87 3.41
948 2985 0.467384 AAGACTCGAGGCCATCCATG 59.533 55.000 16.58 0.00 33.74 3.66
949 2986 0.467384 CAAGACTCGAGGCCATCCAT 59.533 55.000 16.58 0.00 33.74 3.41
950 2987 0.614697 TCAAGACTCGAGGCCATCCA 60.615 55.000 16.58 0.00 33.74 3.41
951 2988 0.103937 CTCAAGACTCGAGGCCATCC 59.896 60.000 16.58 0.00 0.00 3.51
952 2989 0.529555 GCTCAAGACTCGAGGCCATC 60.530 60.000 16.58 3.32 0.00 3.51
953 2990 1.519719 GCTCAAGACTCGAGGCCAT 59.480 57.895 16.58 0.34 0.00 4.40
954 2991 2.973899 GCTCAAGACTCGAGGCCA 59.026 61.111 16.58 0.00 0.00 5.36
957 2994 1.261238 AAGGGGCTCAAGACTCGAGG 61.261 60.000 18.41 0.00 0.00 4.63
958 2995 0.174617 GAAGGGGCTCAAGACTCGAG 59.825 60.000 11.84 11.84 0.00 4.04
959 2996 0.251832 AGAAGGGGCTCAAGACTCGA 60.252 55.000 0.00 0.00 0.00 4.04
960 2997 1.407258 CTAGAAGGGGCTCAAGACTCG 59.593 57.143 0.00 0.00 0.00 4.18
970 3007 3.322541 GTGGTCTCTATTCTAGAAGGGGC 59.677 52.174 11.53 0.00 33.75 5.80
1019 3056 2.853210 CGTGCTTGCACGTCGAAT 59.147 55.556 31.79 0.00 42.91 3.34
1115 3152 1.374252 CTCACAAGTAAGCGCGGGT 60.374 57.895 8.83 0.00 0.00 5.28
1144 3181 1.238439 CGCAGTCTTGTTGAATGGGT 58.762 50.000 0.00 0.00 44.84 4.51
1179 3216 1.663388 TCGCGCACTTGACACGAAT 60.663 52.632 8.75 0.00 0.00 3.34
1263 3300 9.936329 ATTCAACTAATTTACCCATATTCAGGT 57.064 29.630 0.00 0.00 40.31 4.00
1297 3334 4.392445 GGAGCTCATATTCAGCATGTGATC 59.608 45.833 17.19 0.00 39.56 2.92
1328 3368 9.999009 GGCAAAGAACATATACCTACTTTTTAC 57.001 33.333 0.00 0.00 0.00 2.01
1368 3416 7.870445 ACTTTAACCGAACAAATGTTGCAATAT 59.130 29.630 0.59 1.59 38.56 1.28
1369 3417 7.203910 ACTTTAACCGAACAAATGTTGCAATA 58.796 30.769 0.59 0.00 38.56 1.90
1370 3418 6.045955 ACTTTAACCGAACAAATGTTGCAAT 58.954 32.000 0.59 0.00 38.56 3.56
1371 3419 5.411781 ACTTTAACCGAACAAATGTTGCAA 58.588 33.333 3.05 0.00 38.56 4.08
1442 3490 5.047943 TGTGGTAAACATTCATTTAACCGGG 60.048 40.000 6.32 0.00 31.78 5.73
1467 3515 2.182827 ACCTAGAGCTCACATTCAGCA 58.817 47.619 17.77 0.00 39.56 4.41
1518 3566 0.897621 GCTGCTGCCCTTTGGTAAAT 59.102 50.000 3.85 0.00 0.00 1.40
1576 3624 7.712264 TGTTCCATCAAATGACATGTTTTTC 57.288 32.000 0.00 0.00 0.00 2.29
1676 3724 7.816640 TCATACCTTTTCTTTGTGAACTATGC 58.183 34.615 0.00 0.00 33.88 3.14
1837 3885 4.855715 TGTCTCGTCTTCTGTCAATCTT 57.144 40.909 0.00 0.00 0.00 2.40
1914 3967 7.559533 AGCTCAGTCTTTTAGATCACTGATCTA 59.440 37.037 20.57 20.57 46.15 1.98
1916 3969 6.572519 AGCTCAGTCTTTTAGATCACTGATC 58.427 40.000 10.65 10.65 43.30 2.92
1917 3970 6.543430 AGCTCAGTCTTTTAGATCACTGAT 57.457 37.500 10.68 0.00 43.30 2.90
1918 3971 5.991933 AGCTCAGTCTTTTAGATCACTGA 57.008 39.130 10.03 10.03 42.34 3.41
1919 3972 8.539770 TTTTAGCTCAGTCTTTTAGATCACTG 57.460 34.615 0.00 0.00 38.09 3.66
1920 3973 8.589338 TCTTTTAGCTCAGTCTTTTAGATCACT 58.411 33.333 0.00 0.00 0.00 3.41
1921 3974 8.764524 TCTTTTAGCTCAGTCTTTTAGATCAC 57.235 34.615 0.00 0.00 0.00 3.06
1922 3975 9.593134 GATCTTTTAGCTCAGTCTTTTAGATCA 57.407 33.333 0.00 0.00 36.15 2.92
1923 3976 9.816354 AGATCTTTTAGCTCAGTCTTTTAGATC 57.184 33.333 0.00 0.00 36.28 2.75
1925 3978 9.429359 CAAGATCTTTTAGCTCAGTCTTTTAGA 57.571 33.333 4.86 0.00 0.00 2.10
1926 3979 9.429359 TCAAGATCTTTTAGCTCAGTCTTTTAG 57.571 33.333 4.86 0.00 0.00 1.85
1927 3980 9.429359 CTCAAGATCTTTTAGCTCAGTCTTTTA 57.571 33.333 4.86 0.00 0.00 1.52
1928 3981 7.390162 CCTCAAGATCTTTTAGCTCAGTCTTTT 59.610 37.037 4.86 0.00 0.00 2.27
1929 3982 6.878389 CCTCAAGATCTTTTAGCTCAGTCTTT 59.122 38.462 4.86 0.00 0.00 2.52
1930 3983 6.405538 CCTCAAGATCTTTTAGCTCAGTCTT 58.594 40.000 4.86 0.00 0.00 3.01
1931 3984 5.104982 CCCTCAAGATCTTTTAGCTCAGTCT 60.105 44.000 4.86 0.00 0.00 3.24
1932 3985 5.105146 TCCCTCAAGATCTTTTAGCTCAGTC 60.105 44.000 4.86 0.00 0.00 3.51
1933 3986 4.780021 TCCCTCAAGATCTTTTAGCTCAGT 59.220 41.667 4.86 0.00 0.00 3.41
1934 3987 5.104982 ACTCCCTCAAGATCTTTTAGCTCAG 60.105 44.000 4.86 5.08 0.00 3.35
1935 3988 4.780021 ACTCCCTCAAGATCTTTTAGCTCA 59.220 41.667 4.86 0.00 0.00 4.26
1936 3989 5.351948 ACTCCCTCAAGATCTTTTAGCTC 57.648 43.478 4.86 0.00 0.00 4.09
1937 3990 5.961421 AGTACTCCCTCAAGATCTTTTAGCT 59.039 40.000 4.86 0.00 0.00 3.32
1938 3991 6.228616 AGTACTCCCTCAAGATCTTTTAGC 57.771 41.667 4.86 0.00 0.00 3.09
1939 3992 7.562088 AGGTAGTACTCCCTCAAGATCTTTTAG 59.438 40.741 4.86 6.42 0.00 1.85
1940 3993 7.420029 AGGTAGTACTCCCTCAAGATCTTTTA 58.580 38.462 4.86 0.00 0.00 1.52
1941 3994 6.265304 AGGTAGTACTCCCTCAAGATCTTTT 58.735 40.000 4.86 0.00 0.00 2.27
1942 3995 5.844601 AGGTAGTACTCCCTCAAGATCTTT 58.155 41.667 4.86 0.00 0.00 2.52
1943 3996 5.475398 AGGTAGTACTCCCTCAAGATCTT 57.525 43.478 0.11 0.88 0.00 2.40
1944 3997 5.475398 AAGGTAGTACTCCCTCAAGATCT 57.525 43.478 7.57 0.00 0.00 2.75
1945 3998 6.487668 GTCTAAGGTAGTACTCCCTCAAGATC 59.512 46.154 17.36 10.62 30.16 2.75
1946 3999 6.367161 GTCTAAGGTAGTACTCCCTCAAGAT 58.633 44.000 17.36 2.77 30.16 2.40
1947 4000 5.339861 GGTCTAAGGTAGTACTCCCTCAAGA 60.340 48.000 7.57 10.78 0.00 3.02
1948 4001 4.888823 GGTCTAAGGTAGTACTCCCTCAAG 59.111 50.000 7.57 8.69 0.00 3.02
1949 4002 4.627255 CGGTCTAAGGTAGTACTCCCTCAA 60.627 50.000 7.57 0.00 0.00 3.02
1950 4003 3.118112 CGGTCTAAGGTAGTACTCCCTCA 60.118 52.174 7.57 0.00 0.00 3.86
1962 4015 4.954826 AGTTAATAGCAGTCGGTCTAAGGT 59.045 41.667 0.00 0.00 0.00 3.50
2031 4084 9.679661 TTGCTTGTCTTGGATATAAAACATCTA 57.320 29.630 0.00 0.00 0.00 1.98
2116 4171 5.071653 TGGTTATGCAGCTCCAGAATATGTA 59.928 40.000 0.00 0.00 0.00 2.29
2176 4231 3.633361 GGAAGGTCCTGTTGGTGAG 57.367 57.895 0.00 0.00 32.53 3.51
2191 4246 4.592351 TCTGATTTTGGATTGGCAAAGGAA 59.408 37.500 3.01 0.00 0.00 3.36


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.