>input_sequence_85636
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----------------------------------------------------------------------------ATGG
TCGGCCTCATATTACATTCGACGTGCAAGCACGCAACAGCAAGGTTGCCGATTTTTCGCGCCCCGTTGAGCGAGTATTGG
CCTCCTAGCTTTTTATCAATGACACGAAAGAACCCGCGCTTACTTGTGAGATACGGTCGGACCCATTCAACAAGACTGCG
CTCCGCCTGGGGACGATTCGTGTCAAGTGCGCGACGACCACACATCATCTCTAGAAGCACAACCCCGAAGCCATATACGT
CGCACTTTGCAGTAAGATGA------------------------------------------------------------
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>chr5D_1_TraesCS5D01G494700
CATCATGGCTCTGCACTCTGCAGCGTCCTTGTGCTGCCCCTTGCCGTTACCTGTCTGGCCTGACCTCGTTGCCGTCCGCG
TCGCCGTCGCCGGGTAAGGCAGAAGCGAGTTTGCAGATCGTCGCCGGGCCCGAGT-------CAAACGAACAGGGACAGC
GTTGCTCTCTCTCACCGGTGATATCGGCTGACGCACGGCAGGATCACATGTAGTACCACCTTCGTGTCA-AAGTCAAAAT
GCACGGCAAAAGCCAGTAGGGGACGACGCCACTCA---------------------------------------------
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------------------------------------------GACAGGCCATCGATAGTTGGATACAGTGAAGACCACAC
AGGCAAGGCACGGCAGGGAGTACGCGGCATGAGCTCCACTGCCAAGAATCCAACGACACACACACACACACACACACACA
CACATTCAGGTTGACATGCACAGGACATTTTCAGACCACCACCCTAGCTAGATAACAGGTTCAGACTCTGGGTTGCTCTT
GTTAAGTTTCATGCGCTAACCAACGCAACCATAAGTCCAAACTAATGTAAAAGGCTAGTGCAATCCACACATACATACTG
TAACACCCTCTGACAGGGAAGACAAGTCAACACGTGCAACCGGAAGAGAGCGACGGCGCGCGAAACTCACGTATGATACA
AAGGGGGCAACCATCAATTTTTAACAAATTGCGCAAGCCAGGACTTGAACTCAAGGCCTTAGCTCTGATATCATGTTAAG
CTTCATGCACTAGCCAACGCAGTCAAAAGTCCGAATTAATGGAAAGGGCTAGTGCAATCCACATATACCGTAACAACTCT
GACTATCGGCCTTTTTG---------------------GGGCGACGTACGCGTGCCATGCCAGCATTCGCGCTGGGCGGT
GTCATTCTGCTGGCGGACTCGGGCTCTTGATGCTTCTCTACTGCTGGTTTCTTGCCTGGGTCACTCGAGTCTTGAACCCC
TTCTAGAACAGAGACTACATAATCCATGGATGGCCTCGAGTCTTGAGCCCCTTCTAGAATAGAGACCACGTAATCCATGG
TCGGCCTCATATTACATTCGACGTGCAAGCACGCAACAGCAAGGTTGCCGATTTTTCGCGCCCCGTTGAGCGAGTATTGG
CCTCCTAGCTTTTTATCAATGACACGAAAGAACCCGCGCTTACTTGTGAGATACGGTCGGACCCATTCAACAAGACTGCG
CTCCGCCTGGGGACGATTCGTGTCAAGTGCGCGACGACCACACATCATCTCTAGAAGCACAACCCCGAAGCCATATACGT
CGCACTTTGCAGTAAGATGACCTGAATATGGGTAAATTAGTTGAATGGATGTTGATCACATGCTGAATATGAGCTCCTGG
TAAT---GTAAAAAGTAG--------GTATATGTTCTTTGCCAAGAACGCAGCATATATTGCAACATTTGTTCGGTTAAA
GTACATTCAGCCGAATTCAAAATGTAAGAAGATGAGCTGAAACTACTGACCCGGTTAAATGAATGTTTACCACATGCTGA
ATGTGAGCTCTAGGTAAATTTTACAAAATGTCAATGTATATACTTATTTACCAAAGGGCAGCAGCTTGCAACATTTGAAA
GCAAATTAAATTAAGTGTACTTCGAAAAACATGTCATTTGATGGAACAAATTATGGTTGAAGGTAAAAAACTCATAAAAC
ATTTCCCGATATAGTTTGCGTATTCACAGTTTCACACCATTGTGCATAGTTCACAAAGAAAAGGTATGAATAAATCATAA
ATTTCATGATGGCACTGGGGCATTAGATATTCAGTATCAGATCCTGACACGGAATGCATTTCAACTGCATGCGTAGCAAC
TTCAAGAAAGTAATGTTGTTCCAAAACTGGTATCTGCACAGCAGAAGATTGACAGAAGACGAGACAACTTGTACATTTTT
AATTAACCTGTACTCCCTCTG-----TAAACTAATATAAGATCTTTTAGATCAGTGATCTAAAAGACTGAGCTAAAAGAT
CTTGAGGGAGTACTACCTTAGACCGACTGCTATTAACTAGTGCACTAAAAGCTCACTAACACTCAATTGTTCCAGTCATA
TGCTAGATGTTTTATATCCAA--GACAAGCAAATGCGCAAAATACTGGCTTAATAAAACACAAAATTGCAAGTCAAAAGT
TACCTGTTGATACATATTCTGGAGCTGCATAACCATATGTTCCCATTACCCTTGTGGTCACATGACTGTCCTCACCAACA
GGACCTTCCTTTGCCAATCCAAAATCAGAGAGTTTTGCAGTATAATCCTGGGCAGTAGAATATGCATTCATTTAAGTA
>chr5B_17
----------------TCTGCAGCGTCCTTGTGCTGCCCCTTGCCGTTACCTGTCTGACCTCATCTCGTCGCCGTCCACA
TC-----CGCGGGGAAAGGCAGAAGCGAGTTTGCAGATCGTCCACATCGGGTCCGAGTCAAACAAACAAACAGGGACAGC
GTTG----CTCTCACCGGTGATATCGGCTGACGCCCGGCAGGATCGCGT---GTGCCCCCTTCGTGTCAAAAGTCAAAAT
GCACGGCAAAAGCCAGTAGGGGACGACGCCCACTCTGAGGCCAACTCCACCGCACGACCCTAAACGGACGTCCGGATTGG
CCGGATTTTATCCGTTTGGGACGCCGATGGGTACGCCCGTGTCCGGCTGTGTCCATTGGGTCGTGCGTGCGCCCACCGCG
CGGCCGCACCCCAAATCACGTCTGTGTCAAGAAAACATAAAAAGATGACTAAAAAGTACAAAAACGCATTTTAATAAAAG
ATAAAACTTAGTTAGGGGGGTCCATGGCCACAAAACGGCCCAGTTTCGTCACATTAATAATTAAACATAAAAAAGAAAAA
AAAACGGTCTCCGCCGGCGCGCTCCTGCTCGTGCCCGTCGTTGCCGTCGCCGTGGCGCTCTTCACTGGCCGCCGGTGTCG
TCGTCGTCCCTGACGAGGTCGACGTAGGCCGGCGGCGTCCACAGGTGGGCCGGCGGTGCGTGCGGTGCCTGGTAGACGGG
GGCGGGCTGGACGGCGGGAGGTGCCTGCAACACCTCCTCCCGTGGCGACCCCTCCCACTCCGGTGACTGCGGCGGAGTGG
CGCGCCAGTCCACGCCCAGGCAGTCGGCCATCTCCGGAGCAGTGCAGGACCAGGCCCACCCCGTGCCCACCAGCTGCTGG
AAGGCGGCCGCCGGCTCCTCCTCCATGGCGTCCTCCCTCCTCTCCTCCGTCAAGGCCGCCATCTGCAGCTCCGGGAAGGC
CACGTCGCCGGCGGCAGACAGTGCCATGGCCTCCTCCAAGCCGTCCCATTGCCGCTCGTCGTGCGTGCGCATGGAGTCCT
CCATGACACGCTGCACGAGACGGGCTTCCTCCTCCACCGTCATGCGAGGAGGTGGTGGTGGCGATGGAGACGGCGACGGC
GTGGGCGTGAGGCCGCGCACCACCCTACGCCCGCGCTCCTGGGGAGCAGCCGCTGGGCGCTCTGGGCGTGGCCGCCGTGG
CCCCGTCGACGTGCTCATCGCGGAACCAGGTGTCCCACAAATGGCGAGTCGGGGGCGTACCTGGGTCGTAGTAGAGGTCG
TTCGGGAGGAGGCGGCGGCGGCGCTCGATCTCCTGGCGGCGCGCACGGCCGGTCACCGGGATCGGCGCGCGGTCGGCCGA
CAAATGCCAGTTGTTGGGGAGGTGGGCGTCGCTCCAGGGGATCGGCGTCCTCATCTCCCAATAACGGTGGCACACCTCAG
AGCGGATGTAGTGCCGGTCGCGCTCGCCGGCGGACGCGGGGGCGATGGAGAACGCGGGCGGCGAGGGGGCCCGGCGTGGT
GGCGATGGCGAGGCTGGCTCCTTCTTCACCGAGCCGCGGCGACGCCCCGACGAGGAGCCAGCCTCGCGGTCGTGCTTGCC
TTTGCGGCCGTAGTTCCAGAGCCCCATGGTTGCGGGGCGGCCGGCCGGCGAGTTCTTGGCTAGGGTTTGGGGCCTGGGGC
TATCGGGTTTCGAGGAGGCCGCGGGGTGGCGTGGGGCAGTGTGGACGACGACCGGTCCACACTTCCCACTTAAAGAAGGA
CGGCGACCCTTCCATGTGTGGATGACAGGTCGGGCCGTCCGCCCGTGCGCATTGATGTGGGCGGGAGGAAGGTAGGTGGC
CGCCTGCCACGCGGCCCCGACGCGGACGAGGGCGCGTCCGTTTGGTGTCCGCCGCGACCCAAACCCAGCGCAAGTTTGCG
CTCGAAATGGGTCGGCCCGGACACAAAACGGACAGGATGGGTCCGGGCTGTCGCGCGCTGGGCCTCCTCCTTTGTCCCTT
TTACCCCAAACGGACCGGGGCGGACAGGATAGGGTCGCGCGGTGGAGTTGGCCTGACATGTGGGGCATGCCCGGACACAG
CGGACGAAGAGGACGCGGAGGCGTCCGTTTTCTGTCCGCTTTTGCCTCAAATCCAGACCAACTTTGGGCCAGAGATGGGG
TGAAACGGACACGAAACGGACGAAAAGGTAAAATGGGGTCTGCCGCTGGATCGCTGCATGTGTCTACTTTTACCCAAACC
GCGTCCGGCGGACAAGATAGGGTAGCGCGGTGGAGATGGCCTGACAGGCCATTGATAGTTGGATACAGTGAAGATCACAC
AG-----GCACGGCAGGGAGTATGCAGCATGAGCTCCACTGCCAAGAACTCAACGG----------------CACACAAA
TACATCCAGGTTGCCATGCACAGGGCATTTTCAGACTACCACCCTAGCTAGATAACAGGTTCAGACTCTTGGTTGCTA--
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-------------------------------------------------------------------------------T
GACTAGCGGCCTTGTTTCCAAGGTCTCCTGAGCTTTTAGGGCGACGTACGCGTGCCGTGCCAGCATCCGCGCTTGGCGCT
GTCATTCTGCCGGCGGACTTGGGCTCTTGATGCTTCTTTGCTGCTGCTTTCTTGCGTCGGTCACTG--------------
-------------------------------------GAGTCTTGAACCCCTTCTAGAATGGAGACTACGTAATCCATGG
TCGGCCTCATATTACCTTCAACGTGCAAGCACGCGACAGCAAGGTTGGCGATTTTCCGCGCCCCATTGATCGAGTATCGG
CCTCCTAGCTTTTTATCAATGACACGAAAGATCCCGCGCTTACTTGTGAGATTCGGTCGGGCCCATCCAACAAGATTGAG
CTCCGCCGGGGCACGGTTCGTGTCAAGTGCGCGACGACCACACAACATCTCTAGAAGCACAACCCCGAAGCCATATACGT
CGCACTTTGCAGTAAGATGGCCTGAATATGGGTAAATTAGTCGAATGGATGTTAATCACATGCTGAATATGAGCTCCTGG
TAAT---ATAAAAAGCAGGTATATCCGTATATGTTCTTTGCCAAGAACGCAGCAT----TGCAACATTTGTTCAGTTAAA
GTACATTCAGCCGAATTCAAAATGTAAGAAGGTGAGCTGAAACTACTGA-CCGGTTAAATGAATGTTTACCACACGCTGA
ATGTGAGCTCTAGGTAAATTTTACAAAATGTCAATGTATATACTTCTTTACCAAAGGGCAGCAGCTTGCAACACTTGAAA
GCACATTAAATTAAGTGTACTTCAAAAAACATGTCATTTGATGGAACAAATTATGGTTCAAGGTAAAAAACTCATAAAAC
ATTTCCCAATATAGTTTGCATA--------TTCACACCATTGTACATAGTTCACAAAGAAAAGGTATGAATAAATCATAA
ATTTCATGATGGCACTGGGGCATTAGATATTCAGCATCAGATCCTGACAGGGAATGCATTTCAACTGCACGCGTAGCAAC
TTCAAGAAAGTAATGTTGTTACAAAAATGGTATCTGCACAGCAGCAGATTGACAGAAGACGAGACAACTTGTACATTTTT
AATTAATCTTATATTAGTTTATA---------------------------------------------------------
---GAGGGAGTACTGCCTTAGACCGACTGCTATTAACTAGTGCACTAAAAACTCACTAACACTCGATTGTTCCAGTCATA
TGCCAGATGTTTTATATCCAA--GACAAGCAAATGCGCAGAATACTGGCTTAATAAAACACAAAATTGCAACTCAAAAGT
TACCTGTTGACACATATTCTGGAGCTGCATAACCATATGTTCCCATTACCCTTGTGGTCACATGACTGTCTTCACCAACA
GGACCATCCTTTGCCAATCCAAAATCAGAGAGTTTTGCAGTATAATCCTGGGCAGTACAATATGCATTCATTTAAGTA
>chr5A_962
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-------------------------------------GAGTCTTGAACCCCTTCCAGGACAGAGACCACGTAATCCATGG
TCGGCCTCATATTACGTTCGACGTGCAAGCACGCGACAGCAAGGTTGCCGATTTTTCGCGCCCCGTTGAGCGGGTATTGG
CCTCCTAGCTTTATATCAACGACACGAAAGATCTTGCGCTTGCTTGTGAGATACGGCCGGGCCCATTCAACAAGACTGCG
CTCCGCCTGGGGACGGTTCGCGTCAAGTGCGCGACGACCACACATCATCTCTAGAAGCACAACCCCGAAGCCATATACGT
CGCACTTTGCAGTAAGATGGCCTGAATATGGGTAAATTAGTTGAATGGATGTTAATCACATGCTGAATATGAGCTCCTGG
TAATAATATAAAAAGTAG--------GTATATGTTCTTTGCCAAGAACGCAGCAT----TGCAACATTTGTTCGGTTAAA
GTACATTCAGCTGAATTCAAAATGTAAGAAGATGAGCTGAAACTACTGA-CCGGTTAAATGAATGTTTACCACACGCTGA
ATATGAGCTCTAGGTAAATTTTACAAAAATGTCAATG-TATACTTCTTTGCCAAAGGGT---AGCTTGCAACATTTGAAA
GCAAATTAAATTGAGTGTAATTC--AAAACATGTCATTTGATGGAACAAATTATGGTTGAAGGTAAAAAACTCATAAAAC
ATTTCCCGATATAGTCTGCGTA--------TTCACACCATTGTACATAGTTCACAAAGAAAAGGTATGAATAAATCATAA
ATTTCATGATGGCACTGGGGCATTAGATATTCAGTATCAGATCCTGACACTGAATGCATTTCAACTGCATGCGTAGCAAC
TTCAAGAAAGTAATGTTGTTCCAAAAATGGTATCTGCGCAGCAGCAGATTGACAGAAGACGAAACAACTTGTACATTTTT
AATTAACTTGTACTCCCTCTGTAAACTAAACTAATATAAGAT--------------------------------------
-----------------------CGACTGCTATTAACTAGTGCACTAAAAGCTCACTAACACTCAATTGTTCCAGTCATA
TGCCAGATGTTTTATATCCAAAAGACAAGCAAATGCGCAGAATACTGGCTTCATGAAACACAAAATTGCAAGTCAAAAGT
TACCTGTTGACACATATTCTGGAGCTGCATAACCATATGTTCCCATTACCCTTGTGGTCACATGACTGTCTTCACCAACA
GGACCATCCTTTGCCAATCCAAAATCAGAGAGTTTTGCAGTATAATCCTGGGCAGTACAATATGCATTCATTTAAGTA
>SNPs
SSSSSSSSSSSSSSSS-----------------------------------------S---S-S-----S-------S-S
--SSSSS---S---S---------------------------SS-SSSSSSSSSS------------S------------
----SSSS--------------------------S----------S-S-SSS--S--S----------------------
------------------------------SSSSS---------------------------------------------
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----------------------------------------------------S---------------------S-----
--SSSSS---------------S--S----------------------SS-----SSSSSSSSSSSSSSSSS------S-
S----S-------S----------S-----------S--------------------------------S-------SSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-
-----S-------S--S---------------------------------------S---------S------S----S-
----------S--------S-----------------S-S------S--------S-S-------SSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---------S---------------------------------
---------------S------------------S---------------------------------------------
-------------------------------S----------------------------S-------------------
---------------S----------------------------------------------------------------
-------------------S---------------------------------S--------------------------
-------S-----------------------------------------------SSSS---------------------
-------------------------------------------------S------------------------S-----
---------------------------------------------S----------------------------------
-----------------------S--------------------------------------------------------
----------------------SSSSSSSS-------------S------------------------------------
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--------------------------S-----------------S-----------------------------------
------------------------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSS-----------S-----------------------------------------------------------------
---S-----------------------------------S----------------------------------------
----------S-----------------------------------------------------------S---------
-----S---------------------------------------------------S--------------------
>forward_2388
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------------------------------------------------TCCAACGACACACACACACA------------
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>reverse_3566
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---------------------------------------------ATTTACCAAAGGGCAGCAGC---------------
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