Multiple sequence alignment - TraesCS5D01G486600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G486600 chr5D 100.000 5254 0 0 1 5254 521717353 521712100 0.000000e+00 9703
1 TraesCS5D01G486600 chr5A 90.007 2922 177 62 903 3766 650130900 650128036 0.000000e+00 3672
2 TraesCS5D01G486600 chr5A 78.520 1541 156 116 3784 5246 650128043 650126600 0.000000e+00 850
3 TraesCS5D01G486600 chr5A 80.872 826 111 32 4 811 650132100 650131304 1.620000e-169 606
4 TraesCS5D01G486600 chr5B 92.328 1877 80 33 1898 3730 658095144 658093288 0.000000e+00 2610
5 TraesCS5D01G486600 chr5B 87.775 818 67 21 4 807 658096524 658095726 0.000000e+00 926
6 TraesCS5D01G486600 chr5B 90.438 502 21 10 3870 4371 658093064 658092590 2.060000e-178 636
7 TraesCS5D01G486600 chr5B 87.640 445 24 14 4393 4822 658092598 658092170 6.120000e-134 488
8 TraesCS5D01G486600 chr5B 90.349 373 15 2 996 1368 658095497 658095146 2.220000e-128 470
9 TraesCS5D01G486600 chr5B 80.918 414 26 23 4849 5253 658092113 658091744 1.440000e-70 278
10 TraesCS5D01G486600 chr5B 93.684 95 3 3 3781 3872 658093281 658093187 7.090000e-29 139


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G486600 chr5D 521712100 521717353 5253 True 9703.000000 9703 100.000000 1 5254 1 chr5D.!!$R1 5253
1 TraesCS5D01G486600 chr5A 650126600 650132100 5500 True 1709.333333 3672 83.133000 4 5246 3 chr5A.!!$R1 5242
2 TraesCS5D01G486600 chr5B 658091744 658096524 4780 True 792.428571 2610 89.018857 4 5253 7 chr5B.!!$R1 5249

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
836 877 0.342313 CCCTCCCCCTACCACTACTT 59.658 60.0 0.00 0.0 0.00 2.24 F
1567 1931 0.753262 TGCTAAAGCTCCGATCTCCC 59.247 55.0 3.26 0.0 42.66 4.30 F
3403 3815 0.734889 ACCCGAACGTACAGGTATCG 59.265 55.0 1.71 0.0 0.00 2.92 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1704 2068 0.604511 GTTCGTGGTCAAATCGGGGT 60.605 55.0 0.0 0.0 0.0 4.95 R
3423 3840 0.106217 CAGAGGAGGAGGAGGAGGAC 60.106 65.0 0.0 0.0 0.0 3.85 R
5213 5916 0.103876 AAAAGAGGGTGGGAGGGAGT 60.104 55.0 0.0 0.0 0.0 3.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 2.893489 ACGTCCGTACTTTACCCTTTCT 59.107 45.455 0.00 0.00 0.00 2.52
103 108 2.541556 GTCCAGAGTCTTCGGCATAAC 58.458 52.381 0.00 0.00 0.00 1.89
114 119 4.222145 TCTTCGGCATAACACCTTTCTAGT 59.778 41.667 0.00 0.00 0.00 2.57
133 138 3.869272 GCAGGCCTGATTCGCACG 61.869 66.667 37.21 6.77 0.00 5.34
153 158 2.616842 CGAGGTGCTACTTGGTTGTTTT 59.383 45.455 0.00 0.00 0.00 2.43
219 224 8.228464 GGACTAAATTACTTAGCAAGTTGACAC 58.772 37.037 7.16 0.00 40.78 3.67
275 280 3.863142 TCGGTGTAAGACCTTTCTAGC 57.137 47.619 0.00 0.00 43.55 3.42
300 305 6.140786 CGCATATCTGATTCAAACAAGATGG 58.859 40.000 0.00 0.00 0.00 3.51
408 413 8.506168 TCTTTAGTTTTGGCATCTAATACCAG 57.494 34.615 0.00 0.00 34.28 4.00
413 418 4.422073 TTGGCATCTAATACCAGACCAG 57.578 45.455 0.00 0.00 34.28 4.00
415 420 3.388024 TGGCATCTAATACCAGACCAGAC 59.612 47.826 0.00 0.00 0.00 3.51
440 445 6.546395 GTCGACATAGAAATGAGTTGCAATT 58.454 36.000 11.55 0.00 36.54 2.32
449 460 7.893658 AGAAATGAGTTGCAATTTCAAGAGAT 58.106 30.769 19.93 4.36 35.96 2.75
464 475 7.439157 TTCAAGAGATAGAACACATGGTTTG 57.561 36.000 0.00 0.00 40.63 2.93
466 477 6.998074 TCAAGAGATAGAACACATGGTTTGTT 59.002 34.615 0.00 0.00 40.63 2.83
473 484 4.754322 GAACACATGGTTTGTTCCAAACT 58.246 39.130 16.70 0.00 44.79 2.66
474 485 4.385358 ACACATGGTTTGTTCCAAACTC 57.615 40.909 16.70 9.46 41.09 3.01
475 486 3.181491 ACACATGGTTTGTTCCAAACTCG 60.181 43.478 16.70 9.65 41.09 4.18
476 487 3.066064 CACATGGTTTGTTCCAAACTCGA 59.934 43.478 16.70 5.05 41.09 4.04
477 488 3.315191 ACATGGTTTGTTCCAAACTCGAG 59.685 43.478 11.84 11.84 41.09 4.04
478 489 1.673920 TGGTTTGTTCCAAACTCGAGC 59.326 47.619 13.61 0.00 34.24 5.03
479 490 1.947456 GGTTTGTTCCAAACTCGAGCT 59.053 47.619 13.61 0.00 0.00 4.09
480 491 2.031944 GGTTTGTTCCAAACTCGAGCTC 60.032 50.000 13.61 2.73 0.00 4.09
481 492 2.872858 GTTTGTTCCAAACTCGAGCTCT 59.127 45.455 13.61 0.00 0.00 4.09
482 493 4.056050 GTTTGTTCCAAACTCGAGCTCTA 58.944 43.478 13.61 0.00 0.00 2.43
483 494 3.577649 TGTTCCAAACTCGAGCTCTAG 57.422 47.619 13.61 13.43 0.00 2.43
484 495 3.154710 TGTTCCAAACTCGAGCTCTAGA 58.845 45.455 21.18 6.70 0.00 2.43
485 496 3.764434 TGTTCCAAACTCGAGCTCTAGAT 59.236 43.478 21.18 7.24 0.00 1.98
486 497 4.142359 TGTTCCAAACTCGAGCTCTAGATC 60.142 45.833 21.18 3.61 0.00 2.75
505 516 2.108168 TCGACCAAACTAGCAGCCTAT 58.892 47.619 0.00 0.00 0.00 2.57
508 519 5.074804 TCGACCAAACTAGCAGCCTATATA 58.925 41.667 0.00 0.00 0.00 0.86
514 525 7.880195 ACCAAACTAGCAGCCTATATATTTCTG 59.120 37.037 0.00 0.00 0.00 3.02
516 527 9.149225 CAAACTAGCAGCCTATATATTTCTGAG 57.851 37.037 10.76 5.10 0.00 3.35
517 528 8.429237 AACTAGCAGCCTATATATTTCTGAGT 57.571 34.615 10.76 5.53 0.00 3.41
519 530 6.924913 AGCAGCCTATATATTTCTGAGTCA 57.075 37.500 10.76 0.00 0.00 3.41
721 758 2.933260 GTCCCATCTCGCTTTCTTTCTC 59.067 50.000 0.00 0.00 0.00 2.87
722 759 2.834549 TCCCATCTCGCTTTCTTTCTCT 59.165 45.455 0.00 0.00 0.00 3.10
723 760 3.118956 TCCCATCTCGCTTTCTTTCTCTC 60.119 47.826 0.00 0.00 0.00 3.20
724 761 3.118811 CCCATCTCGCTTTCTTTCTCTCT 60.119 47.826 0.00 0.00 0.00 3.10
725 762 4.111916 CCATCTCGCTTTCTTTCTCTCTC 58.888 47.826 0.00 0.00 0.00 3.20
807 848 4.299796 ATGGCCACCACCACCACC 62.300 66.667 8.16 0.00 44.17 4.61
815 856 4.394712 CACCACCACCGCCTCCTC 62.395 72.222 0.00 0.00 0.00 3.71
827 868 2.708132 CTCCTCCCCCTCCCCCTA 60.708 72.222 0.00 0.00 0.00 3.53
828 869 3.040814 TCCTCCCCCTCCCCCTAC 61.041 72.222 0.00 0.00 0.00 3.18
829 870 4.188511 CCTCCCCCTCCCCCTACC 62.189 77.778 0.00 0.00 0.00 3.18
830 871 3.373846 CTCCCCCTCCCCCTACCA 61.374 72.222 0.00 0.00 0.00 3.25
831 872 3.702623 TCCCCCTCCCCCTACCAC 61.703 72.222 0.00 0.00 0.00 4.16
832 873 3.707189 CCCCCTCCCCCTACCACT 61.707 72.222 0.00 0.00 0.00 4.00
833 874 2.338377 CCCCCTCCCCCTACCACTA 61.338 68.421 0.00 0.00 0.00 2.74
834 875 1.074699 CCCCTCCCCCTACCACTAC 60.075 68.421 0.00 0.00 0.00 2.73
835 876 1.600763 CCCCTCCCCCTACCACTACT 61.601 65.000 0.00 0.00 0.00 2.57
836 877 0.342313 CCCTCCCCCTACCACTACTT 59.658 60.000 0.00 0.00 0.00 2.24
837 878 1.691801 CCCTCCCCCTACCACTACTTC 60.692 61.905 0.00 0.00 0.00 3.01
838 879 1.291335 CCTCCCCCTACCACTACTTCT 59.709 57.143 0.00 0.00 0.00 2.85
839 880 2.517127 CCTCCCCCTACCACTACTTCTA 59.483 54.545 0.00 0.00 0.00 2.10
840 881 3.564264 CTCCCCCTACCACTACTTCTAC 58.436 54.545 0.00 0.00 0.00 2.59
841 882 3.204760 TCCCCCTACCACTACTTCTACT 58.795 50.000 0.00 0.00 0.00 2.57
842 883 3.203934 TCCCCCTACCACTACTTCTACTC 59.796 52.174 0.00 0.00 0.00 2.59
843 884 3.564264 CCCCTACCACTACTTCTACTCC 58.436 54.545 0.00 0.00 0.00 3.85
844 885 3.564264 CCCTACCACTACTTCTACTCCC 58.436 54.545 0.00 0.00 0.00 4.30
845 886 3.564264 CCTACCACTACTTCTACTCCCC 58.436 54.545 0.00 0.00 0.00 4.81
846 887 2.546652 ACCACTACTTCTACTCCCCC 57.453 55.000 0.00 0.00 0.00 5.40
890 931 4.624364 CCGCGCTCCCATGCCATA 62.624 66.667 5.56 0.00 0.00 2.74
891 932 3.046087 CGCGCTCCCATGCCATAG 61.046 66.667 5.56 0.00 0.00 2.23
892 933 2.427320 GCGCTCCCATGCCATAGA 59.573 61.111 0.00 0.00 0.00 1.98
893 934 1.963338 GCGCTCCCATGCCATAGAC 60.963 63.158 0.00 0.00 0.00 2.59
894 935 1.665916 CGCTCCCATGCCATAGACG 60.666 63.158 0.00 0.00 0.00 4.18
895 936 1.963338 GCTCCCATGCCATAGACGC 60.963 63.158 0.00 0.00 0.00 5.19
896 937 1.665916 CTCCCATGCCATAGACGCG 60.666 63.158 3.53 3.53 0.00 6.01
897 938 2.087462 CTCCCATGCCATAGACGCGA 62.087 60.000 15.93 0.00 0.00 5.87
898 939 1.956170 CCCATGCCATAGACGCGAC 60.956 63.158 15.93 6.86 0.00 5.19
899 940 1.956170 CCATGCCATAGACGCGACC 60.956 63.158 15.93 3.72 0.00 4.79
900 941 1.956170 CATGCCATAGACGCGACCC 60.956 63.158 15.93 0.66 0.00 4.46
901 942 3.165160 ATGCCATAGACGCGACCCC 62.165 63.158 15.93 0.00 0.00 4.95
913 1266 2.494918 GACCCCACTCATCGGTCG 59.505 66.667 0.00 0.00 36.97 4.79
927 1280 4.176851 GTCGAGGTCGGTCGCTCC 62.177 72.222 0.00 0.00 39.90 4.70
961 1314 3.319198 GGAGAGGCGGTGGGTCAA 61.319 66.667 0.00 0.00 0.00 3.18
962 1315 2.266055 GAGAGGCGGTGGGTCAAG 59.734 66.667 0.00 0.00 0.00 3.02
963 1316 3.959991 GAGAGGCGGTGGGTCAAGC 62.960 68.421 0.00 0.00 0.00 4.01
968 1321 2.030562 CGGTGGGTCAAGCGAGTT 59.969 61.111 0.00 0.00 43.52 3.01
969 1322 1.597027 CGGTGGGTCAAGCGAGTTT 60.597 57.895 0.00 0.00 43.52 2.66
970 1323 1.566018 CGGTGGGTCAAGCGAGTTTC 61.566 60.000 0.00 0.00 43.52 2.78
971 1324 1.566018 GGTGGGTCAAGCGAGTTTCG 61.566 60.000 0.00 0.00 43.89 3.46
972 1325 1.301401 TGGGTCAAGCGAGTTTCGG 60.301 57.895 0.34 0.00 40.84 4.30
973 1326 1.005394 GGGTCAAGCGAGTTTCGGA 60.005 57.895 0.34 0.00 40.84 4.55
974 1327 1.014564 GGGTCAAGCGAGTTTCGGAG 61.015 60.000 0.34 0.00 40.84 4.63
975 1328 1.014564 GGTCAAGCGAGTTTCGGAGG 61.015 60.000 0.34 0.00 40.84 4.30
976 1329 1.374252 TCAAGCGAGTTTCGGAGGC 60.374 57.895 0.34 0.00 40.84 4.70
977 1330 2.432628 AAGCGAGTTTCGGAGGCG 60.433 61.111 0.34 0.00 40.84 5.52
1238 1591 2.507944 GATGATGACGGGGCAGCT 59.492 61.111 0.00 0.00 0.00 4.24
1415 1771 1.296715 GGGAGTCGCACATCTGGTT 59.703 57.895 1.64 0.00 0.00 3.67
1425 1784 1.833630 CACATCTGGTTAGCCCTCTCA 59.166 52.381 0.00 0.00 0.00 3.27
1437 1796 1.133325 GCCCTCTCATCTCCCTACTCA 60.133 57.143 0.00 0.00 0.00 3.41
1453 1812 5.654650 CCCTACTCATCCTCCATGACTATAC 59.345 48.000 0.00 0.00 36.51 1.47
1465 1828 8.378565 CCTCCATGACTATACTTACCAAATCAT 58.621 37.037 0.00 0.00 0.00 2.45
1493 1856 1.295423 GCTGGCCTTTGTCCGTCTA 59.705 57.895 3.32 0.00 0.00 2.59
1538 1901 2.691011 CAGGTCTACTTAGGTGAGCTCC 59.309 54.545 12.15 2.19 36.57 4.70
1548 1912 3.965888 GTGAGCTCCACAAATCCCT 57.034 52.632 12.15 0.00 45.03 4.20
1552 1916 1.210478 GAGCTCCACAAATCCCTGCTA 59.790 52.381 0.87 0.00 0.00 3.49
1553 1917 1.635487 AGCTCCACAAATCCCTGCTAA 59.365 47.619 0.00 0.00 0.00 3.09
1567 1931 0.753262 TGCTAAAGCTCCGATCTCCC 59.247 55.000 3.26 0.00 42.66 4.30
1594 1958 7.148787 CGGTGTCTAATTTCGATTATCTTAGCC 60.149 40.741 0.00 0.00 0.00 3.93
1595 1959 7.656137 GGTGTCTAATTTCGATTATCTTAGCCA 59.344 37.037 0.00 0.00 0.00 4.75
1597 1961 9.208022 TGTCTAATTTCGATTATCTTAGCCATG 57.792 33.333 0.00 0.00 0.00 3.66
1600 1964 7.807977 AATTTCGATTATCTTAGCCATGTGT 57.192 32.000 0.00 0.00 0.00 3.72
1601 1965 8.902540 AATTTCGATTATCTTAGCCATGTGTA 57.097 30.769 0.00 0.00 0.00 2.90
1606 1970 2.579207 TCTTAGCCATGTGTACTCGC 57.421 50.000 0.00 0.00 0.00 5.03
1607 1971 1.822371 TCTTAGCCATGTGTACTCGCA 59.178 47.619 0.00 0.00 38.47 5.10
1619 1983 3.744426 GTGTACTCGCAATTAACACTGGT 59.256 43.478 0.00 0.00 37.92 4.00
1697 2061 9.822185 ATTAATTAATCAGGCCTTGTTTGAATC 57.178 29.630 0.00 0.00 0.00 2.52
1704 2068 4.283212 CAGGCCTTGTTTGAATCCCTTTTA 59.717 41.667 0.00 0.00 0.00 1.52
1715 2079 4.263994 TGAATCCCTTTTACCCCGATTTGA 60.264 41.667 0.00 0.00 0.00 2.69
1745 2109 2.747989 TGTGTACTGAGATGAGACGGTC 59.252 50.000 0.00 0.00 0.00 4.79
1746 2110 2.097791 GTGTACTGAGATGAGACGGTCC 59.902 54.545 4.14 0.00 0.00 4.46
1750 2114 2.362503 AGATGAGACGGTCCGGCA 60.363 61.111 21.82 12.89 37.34 5.69
1825 2189 4.511527 ACATCAACTTCAATCTGAGCGAT 58.488 39.130 0.00 0.00 0.00 4.58
1828 2192 6.765036 ACATCAACTTCAATCTGAGCGATTAT 59.235 34.615 0.00 0.00 40.33 1.28
1853 2217 4.228210 AGGAGGATTTGAAGCAGGTAATCA 59.772 41.667 0.00 0.00 0.00 2.57
1855 2219 5.240403 GGAGGATTTGAAGCAGGTAATCATC 59.760 44.000 0.00 0.00 37.19 2.92
1857 2221 7.141758 AGGATTTGAAGCAGGTAATCATCTA 57.858 36.000 0.00 0.00 0.00 1.98
1858 2222 7.577303 AGGATTTGAAGCAGGTAATCATCTAA 58.423 34.615 0.00 0.00 0.00 2.10
1859 2223 7.718753 AGGATTTGAAGCAGGTAATCATCTAAG 59.281 37.037 0.00 0.00 0.00 2.18
1860 2224 6.683974 TTTGAAGCAGGTAATCATCTAAGC 57.316 37.500 0.00 0.00 0.00 3.09
1861 2225 5.620738 TGAAGCAGGTAATCATCTAAGCT 57.379 39.130 0.00 0.00 0.00 3.74
1862 2226 5.363101 TGAAGCAGGTAATCATCTAAGCTG 58.637 41.667 0.00 0.00 40.74 4.24
1863 2227 5.104776 TGAAGCAGGTAATCATCTAAGCTGT 60.105 40.000 0.00 0.00 40.11 4.40
1864 2228 6.098266 TGAAGCAGGTAATCATCTAAGCTGTA 59.902 38.462 0.00 0.00 40.11 2.74
1953 2320 1.291109 TGGTTGATATCCGGTGGGTT 58.709 50.000 0.00 0.00 33.83 4.11
1955 2322 1.675552 GTTGATATCCGGTGGGTTGG 58.324 55.000 0.00 0.00 33.83 3.77
1957 2324 1.228154 GATATCCGGTGGGTTGGGC 60.228 63.158 0.00 0.00 33.83 5.36
1959 2326 1.286305 ATATCCGGTGGGTTGGGCTT 61.286 55.000 0.00 0.00 33.83 4.35
2169 2536 6.190333 CGCACTAAAATTAATTCACTTCGTCG 59.810 38.462 0.10 0.00 0.00 5.12
2254 2625 3.988379 TTCACAAGCTGTTCATGAACC 57.012 42.857 30.66 18.74 40.46 3.62
2262 2633 2.880890 GCTGTTCATGAACCTGACACTT 59.119 45.455 30.66 0.00 40.46 3.16
2312 2683 4.158384 GTTCATGCTGTGGACGTTTAATG 58.842 43.478 0.00 0.00 0.00 1.90
2339 2710 7.273320 CCTGTCGTAGGTAATCAATCTTAGA 57.727 40.000 1.06 0.00 42.00 2.10
2341 2712 7.810282 CCTGTCGTAGGTAATCAATCTTAGATG 59.190 40.741 0.00 0.00 42.00 2.90
2342 2713 8.459911 TGTCGTAGGTAATCAATCTTAGATGA 57.540 34.615 0.00 0.00 0.00 2.92
2343 2714 9.078990 TGTCGTAGGTAATCAATCTTAGATGAT 57.921 33.333 0.00 0.00 37.88 2.45
2467 2844 2.885644 CCCCGACACTCGATTGCG 60.886 66.667 2.19 7.51 43.74 4.85
2494 2871 5.499004 TCTATTTGGAGCAACTGTTAGGT 57.501 39.130 0.00 0.00 0.00 3.08
2507 2892 3.260884 ACTGTTAGGTTCCACATGATCGT 59.739 43.478 0.00 0.00 0.00 3.73
2518 2903 3.004210 CCACATGATCGTGTTGTCCAAAA 59.996 43.478 18.05 0.00 34.98 2.44
2601 2991 1.123928 CCCCTATCTCCGTTGAGCTT 58.876 55.000 0.00 0.00 38.58 3.74
2606 3001 3.806521 CCTATCTCCGTTGAGCTTTGATG 59.193 47.826 0.00 0.00 38.58 3.07
2717 3114 8.625786 TGTGATTATCCCTGATCATTAACATG 57.374 34.615 0.00 0.00 35.01 3.21
2718 3115 7.175467 TGTGATTATCCCTGATCATTAACATGC 59.825 37.037 0.00 0.00 35.01 4.06
2721 3120 2.437651 TCCCTGATCATTAACATGCGGA 59.562 45.455 0.00 0.00 0.00 5.54
2752 3151 4.003648 ACTTCCTTAATTTCCGCTCACTG 58.996 43.478 0.00 0.00 0.00 3.66
2907 3308 5.067544 GGTACTACTACAATCAGTCTCACCC 59.932 48.000 0.00 0.00 0.00 4.61
2942 3344 4.568359 CCAATCACACCAAGTCTTATCTCG 59.432 45.833 0.00 0.00 0.00 4.04
2963 3365 6.201234 TCTCGTTGATATCGTTGTTGTTTTCA 59.799 34.615 0.00 0.00 0.00 2.69
3001 3403 4.442612 GCTGATGCTCTTGACTTGGATCTA 60.443 45.833 0.00 0.00 36.03 1.98
3115 3517 5.702670 CACAATGCTCTCTTCTCAGGTAAAA 59.297 40.000 0.00 0.00 0.00 1.52
3152 3559 2.882324 GCACTAGCTAACTCAGTGGTC 58.118 52.381 13.97 0.00 40.03 4.02
3163 3570 2.289945 ACTCAGTGGTCAGATTTGCTCC 60.290 50.000 0.00 0.00 0.00 4.70
3214 3621 6.455647 TGTGTCGGTGGATGAGATATTATTC 58.544 40.000 0.00 0.00 0.00 1.75
3226 3633 6.925211 TGAGATATTATTCATCCAGGTCGTC 58.075 40.000 0.00 0.00 0.00 4.20
3403 3815 0.734889 ACCCGAACGTACAGGTATCG 59.265 55.000 1.71 0.00 0.00 2.92
3423 3840 1.136147 CACTACGAGAACGACCCCG 59.864 63.158 0.00 0.00 42.66 5.73
3489 3909 4.058817 ACTGAAACTGTTGCTACTACTGC 58.941 43.478 0.00 0.00 0.00 4.40
3501 3921 6.662414 TGCTACTACTGCATAATGTTTCAC 57.338 37.500 0.00 0.00 35.31 3.18
3573 3994 9.772973 AAATTAAGGTTTACATGTTTCTTTCCC 57.227 29.630 2.30 0.00 0.00 3.97
3574 3995 8.721133 ATTAAGGTTTACATGTTTCTTTCCCT 57.279 30.769 2.30 0.00 0.00 4.20
3576 3997 4.832823 AGGTTTACATGTTTCTTTCCCTGG 59.167 41.667 2.30 0.00 0.00 4.45
3608 4029 2.949177 TGCCTGCTCTCCTAAAAACA 57.051 45.000 0.00 0.00 0.00 2.83
3610 4031 3.347216 TGCCTGCTCTCCTAAAAACATC 58.653 45.455 0.00 0.00 0.00 3.06
3618 4039 7.903145 TGCTCTCCTAAAAACATCTACAAGTA 58.097 34.615 0.00 0.00 0.00 2.24
3632 4053 9.809096 ACATCTACAAGTACTAATCATTGACTG 57.191 33.333 0.00 0.00 0.00 3.51
3674 4112 3.246619 TGAAACGAAACGCAAGCTTTTT 58.753 36.364 0.00 0.00 45.62 1.94
3675 4113 3.302170 TGAAACGAAACGCAAGCTTTTTC 59.698 39.130 10.73 10.73 45.62 2.29
3676 4114 2.553079 ACGAAACGCAAGCTTTTTCA 57.447 40.000 17.81 0.00 45.62 2.69
3725 4167 4.296621 TGCTGTGTAGTAGTACCAGAGA 57.703 45.455 21.15 10.10 32.96 3.10
3742 4184 4.712337 CCAGAGAACTTACTAGATGTGGGT 59.288 45.833 0.00 0.00 0.00 4.51
3743 4185 5.394663 CCAGAGAACTTACTAGATGTGGGTG 60.395 48.000 0.00 0.00 0.00 4.61
3766 4208 0.689623 CTGTTTCCCCTGTGAGCTCT 59.310 55.000 16.19 0.00 0.00 4.09
3767 4209 0.687354 TGTTTCCCCTGTGAGCTCTC 59.313 55.000 16.19 12.36 0.00 3.20
3768 4210 0.035915 GTTTCCCCTGTGAGCTCTCC 60.036 60.000 16.19 6.15 0.00 3.71
3769 4211 0.178891 TTTCCCCTGTGAGCTCTCCT 60.179 55.000 16.19 0.00 0.00 3.69
3770 4212 0.906756 TTCCCCTGTGAGCTCTCCTG 60.907 60.000 16.19 9.24 0.00 3.86
3771 4213 1.305633 CCCCTGTGAGCTCTCCTGA 60.306 63.158 16.19 0.00 0.00 3.86
3772 4214 0.690411 CCCCTGTGAGCTCTCCTGAT 60.690 60.000 16.19 0.00 0.00 2.90
3773 4215 1.202330 CCCTGTGAGCTCTCCTGATT 58.798 55.000 16.19 0.00 0.00 2.57
3774 4216 1.134461 CCCTGTGAGCTCTCCTGATTG 60.134 57.143 16.19 0.00 0.00 2.67
3775 4217 1.829849 CCTGTGAGCTCTCCTGATTGA 59.170 52.381 16.19 0.00 0.00 2.57
3776 4218 2.435069 CCTGTGAGCTCTCCTGATTGAT 59.565 50.000 16.19 0.00 0.00 2.57
3777 4219 3.459145 CTGTGAGCTCTCCTGATTGATG 58.541 50.000 16.19 0.00 0.00 3.07
3778 4220 2.169978 TGTGAGCTCTCCTGATTGATGG 59.830 50.000 16.19 0.00 0.00 3.51
3779 4221 2.170187 GTGAGCTCTCCTGATTGATGGT 59.830 50.000 16.19 0.00 0.00 3.55
3780 4222 2.842496 TGAGCTCTCCTGATTGATGGTT 59.158 45.455 16.19 0.00 0.00 3.67
3781 4223 3.118482 TGAGCTCTCCTGATTGATGGTTC 60.118 47.826 16.19 0.00 0.00 3.62
3782 4224 2.172293 AGCTCTCCTGATTGATGGTTCC 59.828 50.000 0.00 0.00 0.00 3.62
3783 4225 2.831333 CTCTCCTGATTGATGGTTCCG 58.169 52.381 0.00 0.00 0.00 4.30
3784 4226 2.169352 CTCTCCTGATTGATGGTTCCGT 59.831 50.000 0.00 0.00 0.00 4.69
3785 4227 2.093500 TCTCCTGATTGATGGTTCCGTG 60.093 50.000 0.00 0.00 0.00 4.94
3786 4228 1.905894 TCCTGATTGATGGTTCCGTGA 59.094 47.619 0.00 0.00 0.00 4.35
3787 4229 2.093500 TCCTGATTGATGGTTCCGTGAG 60.093 50.000 0.00 0.00 0.00 3.51
3788 4230 1.667724 CTGATTGATGGTTCCGTGAGC 59.332 52.381 0.00 0.00 0.00 4.26
3789 4231 1.278985 TGATTGATGGTTCCGTGAGCT 59.721 47.619 0.00 0.00 0.00 4.09
3790 4232 2.290260 TGATTGATGGTTCCGTGAGCTT 60.290 45.455 0.00 0.00 0.00 3.74
3838 4282 1.135460 CGTCCTCCGGTTCTTACAGTC 60.135 57.143 0.00 0.00 0.00 3.51
3882 4451 5.814705 CAGCTTTAGATGTAGCTTGCTTAGT 59.185 40.000 0.00 0.00 45.03 2.24
3895 4467 5.479375 AGCTTGCTTAGTTGTAGTAGTACCA 59.521 40.000 5.26 0.00 0.00 3.25
3958 4530 3.744426 ATTCACATGAAAGCAAGCTTTGC 59.256 39.130 23.29 8.08 45.16 3.68
3986 4558 1.965930 GCACGGCCATGACTTGACA 60.966 57.895 1.12 0.00 0.00 3.58
3996 4568 3.427368 CCATGACTTGACACTCTCTCTCG 60.427 52.174 0.00 0.00 0.00 4.04
3998 4570 0.519519 ACTTGACACTCTCTCTCGCG 59.480 55.000 0.00 0.00 0.00 5.87
3999 4571 0.519519 CTTGACACTCTCTCTCGCGT 59.480 55.000 5.77 0.00 0.00 6.01
4000 4572 0.952280 TTGACACTCTCTCTCGCGTT 59.048 50.000 5.77 0.00 0.00 4.84
4001 4573 0.238553 TGACACTCTCTCTCGCGTTG 59.761 55.000 5.77 0.00 0.00 4.10
4002 4574 0.238817 GACACTCTCTCTCGCGTTGT 59.761 55.000 5.77 0.00 0.00 3.32
4003 4575 0.669077 ACACTCTCTCTCGCGTTGTT 59.331 50.000 5.77 0.00 0.00 2.83
4004 4576 1.056103 CACTCTCTCTCGCGTTGTTG 58.944 55.000 5.77 0.00 0.00 3.33
4005 4577 0.664767 ACTCTCTCTCGCGTTGTTGC 60.665 55.000 5.77 0.00 0.00 4.17
4006 4578 1.347817 CTCTCTCTCGCGTTGTTGCC 61.348 60.000 5.77 0.00 0.00 4.52
4007 4579 1.664649 CTCTCTCGCGTTGTTGCCA 60.665 57.895 5.77 0.00 0.00 4.92
4008 4580 1.891060 CTCTCTCGCGTTGTTGCCAC 61.891 60.000 5.77 0.00 0.00 5.01
4047 4619 2.771762 AGGAGAGGCCCATGGAGC 60.772 66.667 15.22 14.96 37.37 4.70
4272 4847 4.586841 ACTAGCTCTCTCTCTCTCTCTCTC 59.413 50.000 0.00 0.00 0.00 3.20
4273 4848 3.652055 AGCTCTCTCTCTCTCTCTCTCT 58.348 50.000 0.00 0.00 0.00 3.10
4287 4862 2.124819 CTCTGCTTGCTCGGCCAT 60.125 61.111 2.24 0.00 0.00 4.40
4314 4889 2.943345 GCCGACGAGCTTGTGTGTG 61.943 63.158 12.53 0.00 0.00 3.82
4315 4890 1.591594 CCGACGAGCTTGTGTGTGT 60.592 57.895 12.53 0.00 0.00 3.72
4370 4948 6.100004 TGTTGTGAATTAATCGGAGAGAGAC 58.900 40.000 0.00 0.00 43.63 3.36
4371 4949 5.914898 TGTGAATTAATCGGAGAGAGACA 57.085 39.130 0.00 0.00 43.63 3.41
4372 4950 5.651530 TGTGAATTAATCGGAGAGAGACAC 58.348 41.667 0.00 0.00 43.63 3.67
4375 4953 3.759527 TTAATCGGAGAGAGACACACG 57.240 47.619 0.00 0.00 43.63 4.49
4405 4983 0.761187 ATGTGTGAGTGTGACTGGCT 59.239 50.000 0.00 0.00 0.00 4.75
4406 4984 0.179076 TGTGTGAGTGTGACTGGCTG 60.179 55.000 0.00 0.00 0.00 4.85
4423 5001 0.108424 CTGAGGCTGGTTTCTCTCCG 60.108 60.000 0.00 0.00 0.00 4.63
4424 5002 1.448717 GAGGCTGGTTTCTCTCCGC 60.449 63.158 0.00 0.00 0.00 5.54
4425 5003 2.815647 GGCTGGTTTCTCTCCGCG 60.816 66.667 0.00 0.00 0.00 6.46
4426 5004 2.048127 GCTGGTTTCTCTCCGCGT 60.048 61.111 4.92 0.00 0.00 6.01
4427 5005 2.095252 GCTGGTTTCTCTCCGCGTC 61.095 63.158 4.92 0.00 0.00 5.19
4428 5006 1.801913 CTGGTTTCTCTCCGCGTCG 60.802 63.158 4.92 0.00 0.00 5.12
4498 5076 5.996513 AGATTCTCATGTATCCATTGCTCAC 59.003 40.000 0.00 0.00 0.00 3.51
4503 5081 4.699735 TCATGTATCCATTGCTCACGTTTT 59.300 37.500 0.00 0.00 0.00 2.43
4558 5140 1.752498 GCAAGTTCATGCATGGATGGA 59.248 47.619 25.97 15.76 45.70 3.41
4564 5146 2.578786 TCATGCATGGATGGATCACAC 58.421 47.619 25.97 0.00 36.67 3.82
4567 5149 1.315690 GCATGGATGGATCACACTGG 58.684 55.000 0.00 0.00 0.00 4.00
4568 5150 1.409241 GCATGGATGGATCACACTGGT 60.409 52.381 0.00 0.00 0.00 4.00
4595 5177 2.217038 AGAAGAGCGGGGAAGCACA 61.217 57.895 0.00 0.00 40.15 4.57
4670 5262 2.351276 GGCGATTGACAGGTGGGT 59.649 61.111 0.00 0.00 0.00 4.51
4673 5265 1.078426 CGATTGACAGGTGGGTCCC 60.078 63.158 0.00 0.00 36.97 4.46
4713 5305 3.768922 GTGAGGAGGCAGCGAGCT 61.769 66.667 4.24 0.00 44.79 4.09
4768 5370 1.464608 AGTGATTGTTCGTTGCCATCG 59.535 47.619 0.00 0.00 0.00 3.84
4807 5414 1.837439 TCTGATTGATGGGCCGTAACT 59.163 47.619 0.00 0.00 0.00 2.24
4810 5417 1.095228 ATTGATGGGCCGTAACTGCG 61.095 55.000 0.00 0.00 0.00 5.18
4834 5450 0.181350 GAGTGGTAGCCAATCCCCTG 59.819 60.000 4.46 0.00 42.03 4.45
4835 5451 1.227383 GTGGTAGCCAATCCCCTGG 59.773 63.158 0.00 0.00 39.71 4.45
4836 5452 1.230149 TGGTAGCCAATCCCCTGGT 60.230 57.895 0.00 0.00 38.86 4.00
4837 5453 1.227383 GGTAGCCAATCCCCTGGTG 59.773 63.158 0.00 0.00 38.86 4.17
4838 5454 1.279025 GGTAGCCAATCCCCTGGTGA 61.279 60.000 0.00 0.00 38.86 4.02
4839 5455 0.181350 GTAGCCAATCCCCTGGTGAG 59.819 60.000 0.00 0.00 38.86 3.51
4840 5456 0.988145 TAGCCAATCCCCTGGTGAGG 60.988 60.000 0.00 0.00 38.86 3.86
4842 5458 1.304282 CCAATCCCCTGGTGAGGTG 59.696 63.158 0.00 0.00 37.73 4.00
4843 5459 1.207488 CCAATCCCCTGGTGAGGTGA 61.207 60.000 0.00 0.00 37.73 4.02
4844 5460 0.254178 CAATCCCCTGGTGAGGTGAG 59.746 60.000 0.00 0.00 37.73 3.51
4846 5462 0.716591 ATCCCCTGGTGAGGTGAGTA 59.283 55.000 0.00 0.00 37.73 2.59
4896 5533 4.643387 AGGCTGTTCGGGTGTGCC 62.643 66.667 0.00 0.00 43.52 5.01
4949 5613 0.039035 TATCTTTGCCACCCACCCAC 59.961 55.000 0.00 0.00 0.00 4.61
4978 5642 6.000219 CCATCCACAATAGCAAAGCTAGTAT 59.000 40.000 4.92 0.00 44.66 2.12
4979 5643 6.072838 CCATCCACAATAGCAAAGCTAGTATG 60.073 42.308 4.92 1.59 44.66 2.39
4980 5644 5.989477 TCCACAATAGCAAAGCTAGTATGT 58.011 37.500 4.92 6.90 44.66 2.29
4981 5645 7.119709 TCCACAATAGCAAAGCTAGTATGTA 57.880 36.000 4.92 0.00 44.66 2.29
4982 5646 6.984474 TCCACAATAGCAAAGCTAGTATGTAC 59.016 38.462 4.92 0.00 44.66 2.90
4983 5647 6.986817 CCACAATAGCAAAGCTAGTATGTACT 59.013 38.462 4.92 0.00 44.66 2.73
4984 5648 7.042456 CCACAATAGCAAAGCTAGTATGTACTG 60.042 40.741 4.92 0.35 44.66 2.74
4991 5655 7.201803 AGCAAAGCTAGTATGTACTGTAGTACC 60.202 40.741 17.03 4.75 42.77 3.34
5010 5684 3.090037 ACCAGTACTGTGCCAGTAGTAG 58.910 50.000 21.18 14.17 45.42 2.57
5028 5702 4.522971 GCTGTAGCCTGTAGGTGC 57.477 61.111 0.00 0.00 37.57 5.01
5089 5784 1.375652 CACTGGAGCAGAGCAGTGG 60.376 63.158 0.00 0.00 40.75 4.00
5214 5917 4.899687 CGCCGCTGCATGCATCAC 62.900 66.667 22.97 12.89 43.06 3.06
5215 5918 3.515286 GCCGCTGCATGCATCACT 61.515 61.111 22.97 0.00 43.06 3.41
5217 5920 2.713770 CGCTGCATGCATCACTCC 59.286 61.111 22.97 4.83 43.06 3.85
5218 5921 2.831366 CGCTGCATGCATCACTCCC 61.831 63.158 22.97 3.09 43.06 4.30
5239 5943 1.971695 CCACCCTCTTTTGGCGACC 60.972 63.158 0.00 0.00 0.00 4.79
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.893489 AGAAAGGGTAAAGTACGGACGT 59.107 45.455 1.98 1.98 0.00 4.34
1 2 3.582714 AGAAAGGGTAAAGTACGGACG 57.417 47.619 0.00 0.00 0.00 4.79
2 3 4.083643 GCAAAGAAAGGGTAAAGTACGGAC 60.084 45.833 0.00 0.00 0.00 4.79
15 16 7.910441 AATATGTTTCCAATGCAAAGAAAGG 57.090 32.000 8.82 0.00 30.54 3.11
103 108 1.168714 GGCCTGCAACTAGAAAGGTG 58.831 55.000 0.00 0.00 43.84 4.00
114 119 2.033911 TGCGAATCAGGCCTGCAA 59.966 55.556 28.91 12.78 31.69 4.08
133 138 5.959618 ATAAAACAACCAAGTAGCACCTC 57.040 39.130 0.00 0.00 0.00 3.85
187 192 8.107095 ACTTGCTAAGTAATTTAGTCCCATCAA 58.893 33.333 0.44 0.00 40.69 2.57
219 224 8.665685 ACGTTCCTCAAGCTAAACATAAATAAG 58.334 33.333 0.00 0.00 0.00 1.73
275 280 5.739752 TCTTGTTTGAATCAGATATGCGG 57.260 39.130 0.00 0.00 0.00 5.69
324 329 9.587772 GTTGCGGAGATGAGTATTATAATACAT 57.412 33.333 28.82 18.56 42.87 2.29
325 330 8.581578 TGTTGCGGAGATGAGTATTATAATACA 58.418 33.333 28.82 15.37 42.87 2.29
344 349 8.234546 AGTTACAGAGTAATTTAATTGTTGCGG 58.765 33.333 0.00 0.00 0.00 5.69
390 395 5.045213 TCTGGTCTGGTATTAGATGCCAAAA 60.045 40.000 0.00 0.00 44.60 2.44
408 413 3.482722 TTTCTATGTCGACGTCTGGTC 57.517 47.619 14.83 1.89 42.48 4.02
413 418 4.259451 GCAACTCATTTCTATGTCGACGTC 60.259 45.833 14.83 5.18 33.34 4.34
415 420 3.612423 TGCAACTCATTTCTATGTCGACG 59.388 43.478 11.62 0.00 33.34 5.12
440 445 6.998074 ACAAACCATGTGTTCTATCTCTTGAA 59.002 34.615 0.00 0.00 41.93 2.69
464 475 3.851976 TCTAGAGCTCGAGTTTGGAAC 57.148 47.619 21.38 0.00 0.00 3.62
466 477 2.614520 CGATCTAGAGCTCGAGTTTGGA 59.385 50.000 21.38 6.12 35.92 3.53
467 478 2.614520 TCGATCTAGAGCTCGAGTTTGG 59.385 50.000 21.38 12.55 37.71 3.28
468 479 3.547214 GGTCGATCTAGAGCTCGAGTTTG 60.547 52.174 21.38 17.04 42.29 2.93
469 480 2.614983 GGTCGATCTAGAGCTCGAGTTT 59.385 50.000 21.38 11.71 42.29 2.66
470 481 2.215196 GGTCGATCTAGAGCTCGAGTT 58.785 52.381 21.38 14.49 42.29 3.01
471 482 1.139256 TGGTCGATCTAGAGCTCGAGT 59.861 52.381 21.38 10.47 42.29 4.18
472 483 1.872388 TGGTCGATCTAGAGCTCGAG 58.128 55.000 16.69 17.01 42.29 4.04
473 484 2.327200 TTGGTCGATCTAGAGCTCGA 57.673 50.000 13.16 13.16 39.89 4.04
474 485 2.356382 AGTTTGGTCGATCTAGAGCTCG 59.644 50.000 8.37 7.89 39.21 5.03
475 486 4.555906 GCTAGTTTGGTCGATCTAGAGCTC 60.556 50.000 5.27 5.27 39.21 4.09
476 487 3.316868 GCTAGTTTGGTCGATCTAGAGCT 59.683 47.826 6.41 0.00 39.21 4.09
477 488 3.066900 TGCTAGTTTGGTCGATCTAGAGC 59.933 47.826 0.00 0.00 38.95 4.09
478 489 4.791411 GCTGCTAGTTTGGTCGATCTAGAG 60.791 50.000 0.00 3.26 33.81 2.43
479 490 3.066900 GCTGCTAGTTTGGTCGATCTAGA 59.933 47.826 0.00 0.00 33.81 2.43
480 491 3.376540 GCTGCTAGTTTGGTCGATCTAG 58.623 50.000 0.00 2.79 34.71 2.43
481 492 2.100916 GGCTGCTAGTTTGGTCGATCTA 59.899 50.000 0.00 0.00 0.00 1.98
482 493 1.134670 GGCTGCTAGTTTGGTCGATCT 60.135 52.381 0.00 0.00 0.00 2.75
483 494 1.134670 AGGCTGCTAGTTTGGTCGATC 60.135 52.381 0.00 0.00 0.00 3.69
484 495 0.905357 AGGCTGCTAGTTTGGTCGAT 59.095 50.000 0.00 0.00 0.00 3.59
485 496 1.552578 TAGGCTGCTAGTTTGGTCGA 58.447 50.000 0.00 0.00 0.00 4.20
486 497 2.604046 ATAGGCTGCTAGTTTGGTCG 57.396 50.000 0.00 0.00 0.00 4.79
487 498 8.097662 AGAAATATATAGGCTGCTAGTTTGGTC 58.902 37.037 0.00 0.00 0.00 4.02
539 556 1.412343 ACAGCCGCCTTCAACATTTTT 59.588 42.857 0.00 0.00 0.00 1.94
721 758 2.760092 CCAGTGGGAGAAAGAGAGAGAG 59.240 54.545 0.00 0.00 35.59 3.20
722 759 2.813907 CCAGTGGGAGAAAGAGAGAGA 58.186 52.381 0.00 0.00 35.59 3.10
723 760 1.206849 GCCAGTGGGAGAAAGAGAGAG 59.793 57.143 12.15 0.00 35.59 3.20
724 761 1.270907 GCCAGTGGGAGAAAGAGAGA 58.729 55.000 12.15 0.00 35.59 3.10
725 762 0.251634 GGCCAGTGGGAGAAAGAGAG 59.748 60.000 12.15 0.00 35.59 3.20
811 852 3.040814 GTAGGGGGAGGGGGAGGA 61.041 72.222 0.00 0.00 0.00 3.71
812 853 4.188511 GGTAGGGGGAGGGGGAGG 62.189 77.778 0.00 0.00 0.00 4.30
813 854 3.373846 TGGTAGGGGGAGGGGGAG 61.374 72.222 0.00 0.00 0.00 4.30
814 855 2.847215 TAGTGGTAGGGGGAGGGGGA 62.847 65.000 0.00 0.00 0.00 4.81
815 856 2.338377 TAGTGGTAGGGGGAGGGGG 61.338 68.421 0.00 0.00 0.00 5.40
816 857 1.074699 GTAGTGGTAGGGGGAGGGG 60.075 68.421 0.00 0.00 0.00 4.79
817 858 0.342313 AAGTAGTGGTAGGGGGAGGG 59.658 60.000 0.00 0.00 0.00 4.30
818 859 1.291335 AGAAGTAGTGGTAGGGGGAGG 59.709 57.143 0.00 0.00 0.00 4.30
819 860 2.850695 AGAAGTAGTGGTAGGGGGAG 57.149 55.000 0.00 0.00 0.00 4.30
820 861 3.203934 GAGTAGAAGTAGTGGTAGGGGGA 59.796 52.174 0.00 0.00 0.00 4.81
821 862 3.564264 GAGTAGAAGTAGTGGTAGGGGG 58.436 54.545 0.00 0.00 0.00 5.40
822 863 3.564264 GGAGTAGAAGTAGTGGTAGGGG 58.436 54.545 0.00 0.00 0.00 4.79
823 864 3.564264 GGGAGTAGAAGTAGTGGTAGGG 58.436 54.545 0.00 0.00 0.00 3.53
824 865 3.564264 GGGGAGTAGAAGTAGTGGTAGG 58.436 54.545 0.00 0.00 0.00 3.18
825 866 3.564264 GGGGGAGTAGAAGTAGTGGTAG 58.436 54.545 0.00 0.00 0.00 3.18
826 867 3.677156 GGGGGAGTAGAAGTAGTGGTA 57.323 52.381 0.00 0.00 0.00 3.25
827 868 2.546652 GGGGGAGTAGAAGTAGTGGT 57.453 55.000 0.00 0.00 0.00 4.16
873 914 4.624364 TATGGCATGGGAGCGCGG 62.624 66.667 10.98 0.00 34.64 6.46
874 915 3.046087 CTATGGCATGGGAGCGCG 61.046 66.667 10.98 0.00 34.64 6.86
875 916 1.963338 GTCTATGGCATGGGAGCGC 60.963 63.158 10.98 0.00 34.64 5.92
876 917 1.665916 CGTCTATGGCATGGGAGCG 60.666 63.158 10.98 9.30 34.64 5.03
877 918 1.963338 GCGTCTATGGCATGGGAGC 60.963 63.158 10.98 12.41 0.00 4.70
878 919 1.665916 CGCGTCTATGGCATGGGAG 60.666 63.158 10.98 6.20 0.00 4.30
879 920 2.131067 TCGCGTCTATGGCATGGGA 61.131 57.895 10.98 4.17 0.00 4.37
880 921 1.956170 GTCGCGTCTATGGCATGGG 60.956 63.158 10.98 1.55 0.00 4.00
881 922 1.956170 GGTCGCGTCTATGGCATGG 60.956 63.158 10.98 7.51 0.00 3.66
882 923 1.956170 GGGTCGCGTCTATGGCATG 60.956 63.158 10.98 0.16 0.00 4.06
883 924 2.421739 GGGTCGCGTCTATGGCAT 59.578 61.111 5.77 4.88 0.00 4.40
884 925 3.845259 GGGGTCGCGTCTATGGCA 61.845 66.667 5.77 0.00 0.00 4.92
885 926 3.845259 TGGGGTCGCGTCTATGGC 61.845 66.667 5.77 0.00 0.00 4.40
886 927 2.106332 GTGGGGTCGCGTCTATGG 59.894 66.667 5.77 0.00 0.00 2.74
887 928 1.065928 GAGTGGGGTCGCGTCTATG 59.934 63.158 5.77 0.00 0.00 2.23
888 929 0.755698 ATGAGTGGGGTCGCGTCTAT 60.756 55.000 5.77 0.00 0.00 1.98
889 930 1.379443 ATGAGTGGGGTCGCGTCTA 60.379 57.895 5.77 0.00 0.00 2.59
890 931 2.680352 ATGAGTGGGGTCGCGTCT 60.680 61.111 5.77 0.00 0.00 4.18
891 932 2.202756 GATGAGTGGGGTCGCGTC 60.203 66.667 5.77 0.00 0.00 5.19
892 933 4.129737 CGATGAGTGGGGTCGCGT 62.130 66.667 5.77 0.00 0.00 6.01
893 934 4.873129 CCGATGAGTGGGGTCGCG 62.873 72.222 0.00 0.00 34.25 5.87
894 935 3.718210 GACCGATGAGTGGGGTCGC 62.718 68.421 0.00 0.00 40.67 5.19
895 936 2.494918 GACCGATGAGTGGGGTCG 59.505 66.667 0.00 0.00 40.67 4.79
896 937 2.005960 CTCGACCGATGAGTGGGGTC 62.006 65.000 0.00 0.00 45.34 4.46
897 938 2.036731 TCGACCGATGAGTGGGGT 59.963 61.111 0.00 0.00 36.58 4.95
898 939 2.786495 CCTCGACCGATGAGTGGGG 61.786 68.421 0.00 0.00 0.00 4.96
899 940 2.005960 GACCTCGACCGATGAGTGGG 62.006 65.000 1.94 0.00 0.00 4.61
900 941 1.433879 GACCTCGACCGATGAGTGG 59.566 63.158 1.94 0.00 0.00 4.00
901 942 1.062685 CGACCTCGACCGATGAGTG 59.937 63.158 1.94 0.00 43.02 3.51
946 1299 4.021925 GCTTGACCCACCGCCTCT 62.022 66.667 0.00 0.00 0.00 3.69
950 1303 4.681978 ACTCGCTTGACCCACCGC 62.682 66.667 0.00 0.00 0.00 5.68
951 1304 1.566018 GAAACTCGCTTGACCCACCG 61.566 60.000 0.00 0.00 0.00 4.94
952 1305 1.566018 CGAAACTCGCTTGACCCACC 61.566 60.000 0.00 0.00 31.14 4.61
954 1307 1.301401 CCGAAACTCGCTTGACCCA 60.301 57.895 0.00 0.00 38.82 4.51
955 1308 1.005394 TCCGAAACTCGCTTGACCC 60.005 57.895 0.00 0.00 38.82 4.46
957 1310 1.627550 GCCTCCGAAACTCGCTTGAC 61.628 60.000 0.00 0.00 38.82 3.18
958 1311 1.374252 GCCTCCGAAACTCGCTTGA 60.374 57.895 0.00 0.00 38.82 3.02
960 1313 2.432628 CGCCTCCGAAACTCGCTT 60.433 61.111 0.00 0.00 38.82 4.68
1415 1771 2.377193 GAGTAGGGAGATGAGAGGGCTA 59.623 54.545 0.00 0.00 0.00 3.93
1425 1784 3.404081 TCATGGAGGATGAGTAGGGAGAT 59.596 47.826 0.00 0.00 36.06 2.75
1437 1796 7.931015 TTTGGTAAGTATAGTCATGGAGGAT 57.069 36.000 0.00 0.00 0.00 3.24
1453 1812 7.592533 CCAGCGATTGATTAATGATTTGGTAAG 59.407 37.037 0.00 0.00 0.00 2.34
1465 1828 3.088532 ACAAAGGCCAGCGATTGATTAA 58.911 40.909 5.01 0.00 0.00 1.40
1528 1891 0.329596 GGGATTTGTGGAGCTCACCT 59.670 55.000 17.19 0.25 45.48 4.00
1538 1901 2.424956 GGAGCTTTAGCAGGGATTTGTG 59.575 50.000 4.33 0.00 45.16 3.33
1548 1912 0.753262 GGGAGATCGGAGCTTTAGCA 59.247 55.000 4.33 0.00 45.16 3.49
1552 1916 3.221222 CGGGGAGATCGGAGCTTT 58.779 61.111 0.00 0.00 0.00 3.51
1567 1931 7.148787 GCTAAGATAATCGAAATTAGACACCGG 60.149 40.741 0.00 0.00 31.02 5.28
1594 1958 5.315982 CAGTGTTAATTGCGAGTACACATG 58.684 41.667 14.75 0.00 0.00 3.21
1595 1959 4.391830 CCAGTGTTAATTGCGAGTACACAT 59.608 41.667 14.75 2.51 0.00 3.21
1597 1961 3.744426 ACCAGTGTTAATTGCGAGTACAC 59.256 43.478 0.00 7.56 0.00 2.90
1619 1983 5.221561 TGTCGAAACCACCTGAAGAGATTAA 60.222 40.000 0.00 0.00 0.00 1.40
1624 1988 2.135933 GTGTCGAAACCACCTGAAGAG 58.864 52.381 0.00 0.00 0.00 2.85
1680 2044 1.428912 AGGGATTCAAACAAGGCCTGA 59.571 47.619 5.69 0.00 0.00 3.86
1688 2052 3.158676 CGGGGTAAAAGGGATTCAAACA 58.841 45.455 0.00 0.00 0.00 2.83
1697 2061 2.097036 GGTCAAATCGGGGTAAAAGGG 58.903 52.381 0.00 0.00 0.00 3.95
1704 2068 0.604511 GTTCGTGGTCAAATCGGGGT 60.605 55.000 0.00 0.00 0.00 4.95
1825 2189 4.228210 ACCTGCTTCAAATCCTCCTCATAA 59.772 41.667 0.00 0.00 0.00 1.90
1828 2192 1.988107 ACCTGCTTCAAATCCTCCTCA 59.012 47.619 0.00 0.00 0.00 3.86
1859 2223 8.788806 TCTTCTACTCAGATTATAGCTTACAGC 58.211 37.037 0.00 0.00 42.84 4.40
1870 2234 9.916360 TGGTAGTACAATCTTCTACTCAGATTA 57.084 33.333 2.06 0.00 38.67 1.75
1871 2235 8.824756 TGGTAGTACAATCTTCTACTCAGATT 57.175 34.615 2.06 0.00 40.92 2.40
1872 2236 8.824756 TTGGTAGTACAATCTTCTACTCAGAT 57.175 34.615 2.06 0.00 35.69 2.90
1873 2237 7.889073 ACTTGGTAGTACAATCTTCTACTCAGA 59.111 37.037 2.06 0.00 35.69 3.27
1875 2239 9.175312 CTACTTGGTAGTACAATCTTCTACTCA 57.825 37.037 2.06 0.00 35.78 3.41
1876 2240 9.176460 ACTACTTGGTAGTACAATCTTCTACTC 57.824 37.037 8.38 0.00 45.99 2.59
1877 2241 8.958506 CACTACTTGGTAGTACAATCTTCTACT 58.041 37.037 9.58 0.00 46.08 2.57
1878 2242 7.701501 GCACTACTTGGTAGTACAATCTTCTAC 59.298 40.741 9.58 0.00 46.08 2.59
1879 2243 7.414873 CGCACTACTTGGTAGTACAATCTTCTA 60.415 40.741 9.58 0.00 46.08 2.10
1880 2244 6.625300 CGCACTACTTGGTAGTACAATCTTCT 60.625 42.308 9.58 0.00 46.08 2.85
1881 2245 5.515626 CGCACTACTTGGTAGTACAATCTTC 59.484 44.000 9.58 0.00 46.08 2.87
1882 2246 5.408356 CGCACTACTTGGTAGTACAATCTT 58.592 41.667 9.58 0.00 46.08 2.40
1883 2247 4.677250 GCGCACTACTTGGTAGTACAATCT 60.677 45.833 0.30 0.00 46.08 2.40
1884 2248 3.550678 GCGCACTACTTGGTAGTACAATC 59.449 47.826 0.30 0.00 46.08 2.67
1885 2249 3.518590 GCGCACTACTTGGTAGTACAAT 58.481 45.455 0.30 0.00 46.08 2.71
1886 2250 2.353011 GGCGCACTACTTGGTAGTACAA 60.353 50.000 10.83 0.00 46.08 2.41
2254 2625 9.938670 GTCACATCTACTACTAATAAGTGTCAG 57.061 37.037 0.00 0.00 36.36 3.51
2262 2633 7.523873 GCTGCCATGTCACATCTACTACTAATA 60.524 40.741 0.00 0.00 0.00 0.98
2360 2731 3.974642 ACCCTACCCTAAATCAGCTAAGG 59.025 47.826 0.00 0.00 0.00 2.69
2369 2740 7.519347 TTAACTTGATGACCCTACCCTAAAT 57.481 36.000 0.00 0.00 0.00 1.40
2467 2844 4.265073 ACAGTTGCTCCAAATAGATGTCC 58.735 43.478 0.00 0.00 0.00 4.02
2494 2871 2.224402 TGGACAACACGATCATGTGGAA 60.224 45.455 2.70 0.00 44.21 3.53
2518 2903 9.295825 TGCACGGATTGGATTAGATTATTATTT 57.704 29.630 0.00 0.00 0.00 1.40
2521 2906 7.220740 TGTGCACGGATTGGATTAGATTATTA 58.779 34.615 13.13 0.00 0.00 0.98
2523 2908 5.620206 TGTGCACGGATTGGATTAGATTAT 58.380 37.500 13.13 0.00 0.00 1.28
2561 2946 2.224670 GGTGTGTAGGGTGACAATTCCA 60.225 50.000 0.00 0.00 0.00 3.53
2601 2991 8.434589 TGTGGATATCAGGTATATGACATCAA 57.565 34.615 4.83 0.00 35.28 2.57
2717 3114 1.594331 AGGAAGTTTTGTGAGTCCGC 58.406 50.000 0.00 0.00 33.38 5.54
2718 3115 5.941948 ATTAAGGAAGTTTTGTGAGTCCG 57.058 39.130 0.00 0.00 33.38 4.79
2721 3120 6.734871 GCGGAAATTAAGGAAGTTTTGTGAGT 60.735 38.462 0.00 0.00 0.00 3.41
2752 3151 5.352569 CCAAATCCAACATGACACTAGAGTC 59.647 44.000 12.84 12.84 38.99 3.36
2907 3308 3.181520 GGTGTGATTGGAGAAAATCGACG 60.182 47.826 0.00 0.00 39.06 5.12
2942 3344 7.748683 TGCTATGAAAACAACAACGATATCAAC 59.251 33.333 3.12 0.00 0.00 3.18
3001 3403 1.217244 GGTAGGTTGCGACATCCGT 59.783 57.895 6.39 0.00 41.15 4.69
3152 3559 8.255905 AGGAAATTTTCTATTGGAGCAAATCTG 58.744 33.333 8.93 0.00 0.00 2.90
3163 3570 5.178061 GGGCCAACAGGAAATTTTCTATTG 58.822 41.667 10.12 10.12 0.00 1.90
3226 3633 6.426646 AAGTTTAGGAGGAGTATATGCCAG 57.573 41.667 0.00 0.00 0.00 4.85
3403 3815 0.169894 GGGGTCGTTCTCGTAGTGAC 59.830 60.000 0.00 0.00 38.33 3.67
3423 3840 0.106217 CAGAGGAGGAGGAGGAGGAC 60.106 65.000 0.00 0.00 0.00 3.85
3525 3946 8.652810 ATTTCAGGAATGAACTTGTCAAAAAG 57.347 30.769 0.00 0.00 40.50 2.27
3559 3980 5.897250 AGTTTTACCAGGGAAAGAAACATGT 59.103 36.000 0.00 0.00 31.36 3.21
3573 3994 4.641989 AGCAGGCATGATTAGTTTTACCAG 59.358 41.667 0.62 0.00 0.00 4.00
3574 3995 4.599041 AGCAGGCATGATTAGTTTTACCA 58.401 39.130 0.62 0.00 0.00 3.25
3576 3997 5.008118 GGAGAGCAGGCATGATTAGTTTTAC 59.992 44.000 0.62 0.00 0.00 2.01
3610 4031 8.194104 AGCTCAGTCAATGATTAGTACTTGTAG 58.806 37.037 0.00 0.00 37.28 2.74
3618 4039 4.161942 AGCTCAGCTCAGTCAATGATTAGT 59.838 41.667 0.00 0.00 37.28 2.24
3622 4043 2.907634 CAGCTCAGCTCAGTCAATGAT 58.092 47.619 0.00 0.00 36.40 2.45
3623 4044 1.675116 GCAGCTCAGCTCAGTCAATGA 60.675 52.381 0.00 0.00 36.40 2.57
3624 4045 0.727970 GCAGCTCAGCTCAGTCAATG 59.272 55.000 0.00 0.00 36.40 2.82
3625 4046 0.614294 AGCAGCTCAGCTCAGTCAAT 59.386 50.000 0.00 0.00 42.18 2.57
3628 4049 1.637478 GCAAGCAGCTCAGCTCAGTC 61.637 60.000 0.00 0.00 45.89 3.51
3629 4050 1.671704 GCAAGCAGCTCAGCTCAGT 60.672 57.895 0.00 0.00 45.89 3.41
3630 4051 3.179481 GCAAGCAGCTCAGCTCAG 58.821 61.111 0.00 0.00 45.89 3.35
3674 4112 2.484241 CCATGAGACGAGATGCCAATGA 60.484 50.000 0.00 0.00 0.00 2.57
3675 4113 1.871676 CCATGAGACGAGATGCCAATG 59.128 52.381 0.00 0.00 0.00 2.82
3676 4114 1.764723 TCCATGAGACGAGATGCCAAT 59.235 47.619 0.00 0.00 0.00 3.16
3725 4167 5.024118 AGTAGCACCCACATCTAGTAAGTT 58.976 41.667 0.00 0.00 0.00 2.66
3742 4184 1.347707 CTCACAGGGGAAACAGTAGCA 59.652 52.381 0.00 0.00 0.00 3.49
3743 4185 1.946283 GCTCACAGGGGAAACAGTAGC 60.946 57.143 0.00 0.00 0.00 3.58
3766 4208 1.905894 TCACGGAACCATCAATCAGGA 59.094 47.619 0.00 0.00 0.00 3.86
3767 4209 2.283298 CTCACGGAACCATCAATCAGG 58.717 52.381 0.00 0.00 0.00 3.86
3768 4210 1.667724 GCTCACGGAACCATCAATCAG 59.332 52.381 0.00 0.00 0.00 2.90
3769 4211 1.278985 AGCTCACGGAACCATCAATCA 59.721 47.619 0.00 0.00 0.00 2.57
3770 4212 2.029838 AGCTCACGGAACCATCAATC 57.970 50.000 0.00 0.00 0.00 2.67
3771 4213 2.086869 CAAGCTCACGGAACCATCAAT 58.913 47.619 0.00 0.00 0.00 2.57
3772 4214 1.522668 CAAGCTCACGGAACCATCAA 58.477 50.000 0.00 0.00 0.00 2.57
3773 4215 0.955428 GCAAGCTCACGGAACCATCA 60.955 55.000 0.00 0.00 0.00 3.07
3774 4216 0.955428 TGCAAGCTCACGGAACCATC 60.955 55.000 0.00 0.00 0.00 3.51
3775 4217 1.073025 TGCAAGCTCACGGAACCAT 59.927 52.632 0.00 0.00 0.00 3.55
3776 4218 1.891919 GTGCAAGCTCACGGAACCA 60.892 57.895 0.00 0.00 0.00 3.67
3777 4219 2.617274 GGTGCAAGCTCACGGAACC 61.617 63.158 0.00 0.00 37.83 3.62
3778 4220 1.891919 TGGTGCAAGCTCACGGAAC 60.892 57.895 0.00 0.00 37.83 3.62
3779 4221 1.891919 GTGGTGCAAGCTCACGGAA 60.892 57.895 0.00 0.00 37.83 4.30
3780 4222 2.280797 GTGGTGCAAGCTCACGGA 60.281 61.111 0.00 0.00 37.83 4.69
3781 4223 3.357079 GGTGGTGCAAGCTCACGG 61.357 66.667 0.00 0.00 37.83 4.94
3782 4224 1.447317 AAAGGTGGTGCAAGCTCACG 61.447 55.000 0.00 0.00 37.83 4.35
3783 4225 0.312102 GAAAGGTGGTGCAAGCTCAC 59.688 55.000 0.00 9.44 36.28 3.51
3784 4226 1.165907 CGAAAGGTGGTGCAAGCTCA 61.166 55.000 0.00 0.00 33.76 4.26
3785 4227 0.884704 TCGAAAGGTGGTGCAAGCTC 60.885 55.000 0.00 0.00 33.76 4.09
3786 4228 0.465460 TTCGAAAGGTGGTGCAAGCT 60.465 50.000 0.00 0.00 33.76 3.74
3787 4229 0.383949 TTTCGAAAGGTGGTGCAAGC 59.616 50.000 6.47 0.00 0.00 4.01
3788 4230 2.861462 TTTTCGAAAGGTGGTGCAAG 57.139 45.000 10.98 0.00 0.00 4.01
3838 4282 1.337384 TGTCATGGAGGACGGATGGG 61.337 60.000 0.00 0.00 40.72 4.00
3895 4467 0.750546 AAGCTGCGCCATGTGATCAT 60.751 50.000 4.18 0.00 34.21 2.45
3986 4558 0.664767 GCAACAACGCGAGAGAGAGT 60.665 55.000 15.93 0.00 33.96 3.24
4201 4776 2.409055 TGGTGATCCGGGTACGACG 61.409 63.158 0.00 0.00 44.60 5.12
4202 4777 1.140375 GTGGTGATCCGGGTACGAC 59.860 63.158 0.00 2.26 44.60 4.34
4272 4847 3.515286 CCATGGCCGAGCAAGCAG 61.515 66.667 0.00 0.00 0.00 4.24
4273 4848 4.032452 TCCATGGCCGAGCAAGCA 62.032 61.111 6.96 0.00 0.00 3.91
4303 4878 0.255890 ACCTCCAACACACACAAGCT 59.744 50.000 0.00 0.00 0.00 3.74
4343 4918 6.464222 TCTCTCCGATTAATTCACAACAACT 58.536 36.000 0.00 0.00 0.00 3.16
4370 4948 2.985282 ATGGCCTGGCAACGTGTG 60.985 61.111 22.05 0.00 42.51 3.82
4371 4949 2.985282 CATGGCCTGGCAACGTGT 60.985 61.111 22.05 0.00 42.51 4.49
4372 4950 2.985282 ACATGGCCTGGCAACGTG 60.985 61.111 22.05 17.07 42.51 4.49
4375 4953 1.870055 CTCACACATGGCCTGGCAAC 61.870 60.000 22.05 4.31 0.00 4.17
4405 4983 1.975327 CGGAGAGAAACCAGCCTCA 59.025 57.895 0.00 0.00 32.07 3.86
4406 4984 1.448717 GCGGAGAGAAACCAGCCTC 60.449 63.158 0.00 0.00 0.00 4.70
4452 5030 0.815213 TAACGAGCAGCCATGATGCC 60.815 55.000 16.40 9.20 46.90 4.40
4595 5177 3.375922 CACCAACGGTAAAACAACAGACT 59.624 43.478 0.00 0.00 32.11 3.24
4713 5305 1.618888 GCCTACTCACCTCACCCAGTA 60.619 57.143 0.00 0.00 0.00 2.74
4807 5414 4.082523 GCTACCACTCCAGCCGCA 62.083 66.667 0.00 0.00 0.00 5.69
4819 5426 1.227383 CACCAGGGGATTGGCTACC 59.773 63.158 0.00 0.00 42.18 3.18
4834 5450 2.168728 GGGATTGAGTACTCACCTCACC 59.831 54.545 25.13 20.22 38.62 4.02
4835 5451 2.159226 CGGGATTGAGTACTCACCTCAC 60.159 54.545 25.13 22.08 38.62 3.51
4836 5452 2.100197 CGGGATTGAGTACTCACCTCA 58.900 52.381 25.13 11.21 39.66 3.86
4837 5453 1.202428 GCGGGATTGAGTACTCACCTC 60.202 57.143 25.13 21.83 39.66 3.85
4838 5454 0.824759 GCGGGATTGAGTACTCACCT 59.175 55.000 25.13 15.26 39.66 4.00
4839 5455 0.535335 TGCGGGATTGAGTACTCACC 59.465 55.000 25.13 21.98 39.66 4.02
4840 5456 1.067142 TGTGCGGGATTGAGTACTCAC 60.067 52.381 25.13 14.40 39.66 3.51
4842 5458 1.204941 ACTGTGCGGGATTGAGTACTC 59.795 52.381 16.32 16.32 0.00 2.59
4843 5459 1.066858 CACTGTGCGGGATTGAGTACT 60.067 52.381 0.00 0.00 0.00 2.73
4844 5460 1.067142 TCACTGTGCGGGATTGAGTAC 60.067 52.381 2.12 0.00 0.00 2.73
4846 5462 0.396435 TTCACTGTGCGGGATTGAGT 59.604 50.000 2.12 0.00 0.00 3.41
4896 5533 4.748798 AGGTCAGGGGAGGGCAGG 62.749 72.222 0.00 0.00 0.00 4.85
4897 5534 2.612115 AAGGTCAGGGGAGGGCAG 60.612 66.667 0.00 0.00 0.00 4.85
4898 5535 2.935481 CAAGGTCAGGGGAGGGCA 60.935 66.667 0.00 0.00 0.00 5.36
4899 5536 2.936032 ACAAGGTCAGGGGAGGGC 60.936 66.667 0.00 0.00 0.00 5.19
4900 5537 2.606587 CCACAAGGTCAGGGGAGGG 61.607 68.421 0.00 0.00 0.00 4.30
4901 5538 3.081554 CCACAAGGTCAGGGGAGG 58.918 66.667 0.00 0.00 0.00 4.30
4902 5539 2.352805 GCCACAAGGTCAGGGGAG 59.647 66.667 0.00 0.00 37.19 4.30
4903 5540 3.636231 CGCCACAAGGTCAGGGGA 61.636 66.667 0.00 0.00 37.54 4.81
4908 5545 2.047274 GCTAGCGCCACAAGGTCA 60.047 61.111 2.29 0.00 37.19 4.02
4949 5613 2.662535 TGCTATTGTGGATGGATGGG 57.337 50.000 0.00 0.00 0.00 4.00
4982 5646 2.823747 TGGCACAGTACTGGTACTACAG 59.176 50.000 26.12 7.05 43.98 2.74
4983 5647 2.879154 TGGCACAGTACTGGTACTACA 58.121 47.619 26.12 12.97 43.98 2.74
5108 5803 1.009389 CAACGGACGAGAAGCCACTC 61.009 60.000 0.00 0.00 0.00 3.51
5109 5804 1.006102 CAACGGACGAGAAGCCACT 60.006 57.895 0.00 0.00 0.00 4.00
5110 5805 2.668280 GCAACGGACGAGAAGCCAC 61.668 63.158 0.00 0.00 0.00 5.01
5111 5806 2.357034 GCAACGGACGAGAAGCCA 60.357 61.111 0.00 0.00 0.00 4.75
5112 5807 3.119096 GGCAACGGACGAGAAGCC 61.119 66.667 0.00 2.45 34.71 4.35
5165 5860 3.182472 GATGCATGCTCTGGCGCTG 62.182 63.158 20.33 0.11 42.25 5.18
5169 5864 1.445716 GGAGTGATGCATGCTCTGGC 61.446 60.000 20.33 5.55 39.26 4.85
5170 5865 0.818445 GGGAGTGATGCATGCTCTGG 60.818 60.000 20.33 0.00 0.00 3.86
5171 5866 0.180642 AGGGAGTGATGCATGCTCTG 59.819 55.000 20.33 0.00 0.00 3.35
5172 5867 0.469070 GAGGGAGTGATGCATGCTCT 59.531 55.000 20.33 11.61 0.00 4.09
5173 5868 0.534652 GGAGGGAGTGATGCATGCTC 60.535 60.000 20.33 11.54 0.00 4.26
5174 5869 1.530771 GGAGGGAGTGATGCATGCT 59.469 57.895 20.33 1.21 0.00 3.79
5211 5914 1.751143 AAGAGGGTGGGAGGGAGTGA 61.751 60.000 0.00 0.00 0.00 3.41
5212 5915 0.842467 AAAGAGGGTGGGAGGGAGTG 60.842 60.000 0.00 0.00 0.00 3.51
5213 5916 0.103876 AAAAGAGGGTGGGAGGGAGT 60.104 55.000 0.00 0.00 0.00 3.85
5214 5917 0.329596 CAAAAGAGGGTGGGAGGGAG 59.670 60.000 0.00 0.00 0.00 4.30
5215 5918 1.140134 CCAAAAGAGGGTGGGAGGGA 61.140 60.000 0.00 0.00 0.00 4.20
5217 5920 1.304464 GCCAAAAGAGGGTGGGAGG 60.304 63.158 0.00 0.00 35.28 4.30
5218 5921 1.675641 CGCCAAAAGAGGGTGGGAG 60.676 63.158 0.00 0.00 35.28 4.30


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.