Multiple sequence alignment - TraesCS5D01G479200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G479200 chr5D 100.000 2516 0 0 1 2516 517522752 517520237 0.000000e+00 4647.0
1 TraesCS5D01G479200 chr5D 92.381 210 16 0 1280 1489 517600181 517599972 1.460000e-77 300.0
2 TraesCS5D01G479200 chr5D 81.957 327 26 16 868 1179 517591364 517591056 1.930000e-61 246.0
3 TraesCS5D01G479200 chr5D 83.197 244 26 8 1266 1494 517590918 517590675 2.540000e-50 209.0
4 TraesCS5D01G479200 chr5D 81.250 128 13 8 2273 2391 390550286 390550161 2.660000e-15 93.5
5 TraesCS5D01G479200 chr5D 95.918 49 1 1 826 874 517600652 517600605 7.460000e-11 78.7
6 TraesCS5D01G479200 chr5B 88.722 1197 113 8 1 1180 650047245 650046054 0.000000e+00 1443.0
7 TraesCS5D01G479200 chr5B 93.010 515 15 6 1285 1778 650045971 650045457 0.000000e+00 732.0
8 TraesCS5D01G479200 chr5B 84.404 654 75 12 1 644 650054660 650054024 3.560000e-173 617.0
9 TraesCS5D01G479200 chr5B 85.635 543 49 15 625 1152 650054013 650053485 6.120000e-151 544.0
10 TraesCS5D01G479200 chr5B 90.431 209 19 1 1281 1489 650132541 650132334 8.870000e-70 274.0
11 TraesCS5D01G479200 chr5B 82.847 274 16 16 897 1151 650124772 650124511 1.520000e-52 217.0
12 TraesCS5D01G479200 chr5B 83.333 228 24 6 1281 1494 650124327 650124100 5.490000e-47 198.0
13 TraesCS5D01G479200 chr5B 82.589 224 15 12 970 1178 650132839 650132625 2.570000e-40 176.0
14 TraesCS5D01G479200 chr5B 89.583 96 10 0 2402 2497 606930340 606930245 3.400000e-24 122.0
15 TraesCS5D01G479200 chr5B 100.000 30 0 0 1185 1214 650045998 650045969 3.500000e-04 56.5
16 TraesCS5D01G479200 chr5A 88.889 639 26 18 1186 1780 644910882 644910245 0.000000e+00 745.0
17 TraesCS5D01G479200 chr5A 81.346 713 68 18 496 1180 644911610 644910935 1.030000e-143 520.0
18 TraesCS5D01G479200 chr5A 81.663 409 32 26 798 1178 644923513 644923120 1.460000e-77 300.0
19 TraesCS5D01G479200 chr5A 77.904 439 41 26 780 1180 645001084 645000664 3.260000e-54 222.0
20 TraesCS5D01G479200 chr5A 79.624 319 26 17 869 1179 644920684 644920397 2.550000e-45 193.0
21 TraesCS5D01G479200 chr5A 90.090 111 10 1 2140 2250 644909905 644909796 2.610000e-30 143.0
22 TraesCS5D01G479200 chr5A 92.500 40 1 1 1457 1494 644998570 644998531 3.500000e-04 56.5
23 TraesCS5D01G479200 chr1A 86.885 183 22 2 1783 1963 483198334 483198516 1.180000e-48 204.0
24 TraesCS5D01G479200 chr1A 73.113 755 128 48 869 1592 461351144 461351854 1.530000e-47 200.0
25 TraesCS5D01G479200 chr1A 76.577 333 55 14 1266 1592 461372980 461373295 7.200000e-36 161.0
26 TraesCS5D01G479200 chr3B 87.975 158 12 5 2250 2401 797128511 797128355 1.990000e-41 180.0
27 TraesCS5D01G479200 chr3B 86.111 108 14 1 2408 2515 150614169 150614063 5.690000e-22 115.0
28 TraesCS5D01G479200 chr3B 84.348 115 18 0 2402 2516 501970282 501970168 2.050000e-21 113.0
29 TraesCS5D01G479200 chr3B 79.730 148 22 7 2260 2401 699268328 699268473 1.590000e-17 100.0
30 TraesCS5D01G479200 chr7B 84.270 178 25 3 1784 1959 667215758 667215934 1.200000e-38 171.0
31 TraesCS5D01G479200 chr7B 83.240 179 29 1 1787 1964 535519817 535519995 2.000000e-36 163.0
32 TraesCS5D01G479200 chr7B 84.483 116 18 0 2400 2515 61771495 61771610 5.690000e-22 115.0
33 TraesCS5D01G479200 chr7B 79.874 159 17 8 2250 2401 623810936 623810786 4.430000e-18 102.0
34 TraesCS5D01G479200 chr4D 82.873 181 28 3 1787 1965 466669431 466669252 2.590000e-35 159.0
35 TraesCS5D01G479200 chr2B 83.060 183 22 4 1787 1964 693094874 693095052 9.320000e-35 158.0
36 TraesCS5D01G479200 chr2B 89.655 116 12 0 2401 2516 485455932 485456047 5.610000e-32 148.0
37 TraesCS5D01G479200 chr7D 81.868 182 29 4 1786 1964 513211554 513211734 1.560000e-32 150.0
38 TraesCS5D01G479200 chr3D 81.421 183 31 3 1785 1965 358179765 358179584 2.020000e-31 147.0
39 TraesCS5D01G479200 chr2D 81.667 180 30 3 1787 1964 533780112 533780290 2.020000e-31 147.0
40 TraesCS5D01G479200 chr1D 81.081 185 30 4 1784 1964 441286416 441286233 2.610000e-30 143.0
41 TraesCS5D01G479200 chr1D 80.892 157 30 0 1266 1422 361914733 361914889 9.450000e-25 124.0
42 TraesCS5D01G479200 chr3A 88.496 113 13 0 2402 2514 507755595 507755483 1.210000e-28 137.0
43 TraesCS5D01G479200 chr3A 87.179 117 15 0 2399 2515 706484370 706484486 1.570000e-27 134.0
44 TraesCS5D01G479200 chr4A 90.426 94 9 0 2402 2495 616012895 616012802 9.450000e-25 124.0
45 TraesCS5D01G479200 chr1B 86.726 113 14 1 2402 2514 270891137 270891026 9.450000e-25 124.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G479200 chr5D 517520237 517522752 2515 True 4647.000000 4647 100.000000 1 2516 1 chr5D.!!$R2 2515
1 TraesCS5D01G479200 chr5D 517590675 517591364 689 True 227.500000 246 82.577000 868 1494 2 chr5D.!!$R3 626
2 TraesCS5D01G479200 chr5B 650045457 650047245 1788 True 743.833333 1443 93.910667 1 1778 3 chr5B.!!$R2 1777
3 TraesCS5D01G479200 chr5B 650053485 650054660 1175 True 580.500000 617 85.019500 1 1152 2 chr5B.!!$R3 1151
4 TraesCS5D01G479200 chr5B 650132334 650132839 505 True 225.000000 274 86.510000 970 1489 2 chr5B.!!$R5 519
5 TraesCS5D01G479200 chr5B 650124100 650124772 672 True 207.500000 217 83.090000 897 1494 2 chr5B.!!$R4 597
6 TraesCS5D01G479200 chr5A 644909796 644911610 1814 True 469.333333 745 86.775000 496 2250 3 chr5A.!!$R1 1754
7 TraesCS5D01G479200 chr5A 644920397 644923513 3116 True 246.500000 300 80.643500 798 1179 2 chr5A.!!$R2 381

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
369 373 0.110486 GCAAGACTGTTTGGGGGAGA 59.89 55.0 5.36 0.0 0.0 3.71 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1787 2359 0.037232 GACTGTGACCTAGCCACACC 60.037 60.0 10.85 4.61 39.36 4.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
49 52 7.565450 TGCATTGTATTTTCGTTCATTTCTG 57.435 32.000 0.00 0.00 0.00 3.02
110 113 3.996150 AAGAAAACTCATGCACACTGG 57.004 42.857 0.00 0.00 0.00 4.00
111 114 2.936202 AGAAAACTCATGCACACTGGT 58.064 42.857 0.00 0.00 0.00 4.00
233 237 3.494048 GGAGAACTGGAGATGTATGCCTG 60.494 52.174 0.00 0.00 0.00 4.85
245 249 1.740025 GTATGCCTGACAAGTCCAAGC 59.260 52.381 0.00 0.00 0.00 4.01
246 250 0.403271 ATGCCTGACAAGTCCAAGCT 59.597 50.000 0.00 0.00 0.00 3.74
254 258 3.244561 TGACAAGTCCAAGCTAGGGAAAG 60.245 47.826 8.52 4.94 35.88 2.62
278 282 1.899814 ACAAGACCAAGGTATGCGAGA 59.100 47.619 0.00 0.00 0.00 4.04
286 290 4.396166 ACCAAGGTATGCGAGAAATCAAAG 59.604 41.667 0.00 0.00 0.00 2.77
292 296 6.092807 AGGTATGCGAGAAATCAAAGAAGTTC 59.907 38.462 0.00 0.00 0.00 3.01
303 307 6.729690 ATCAAAGAAGTTCATCCCAAACAA 57.270 33.333 5.50 0.00 0.00 2.83
314 318 3.885976 TCCCAAACAACTATCCACCAA 57.114 42.857 0.00 0.00 0.00 3.67
318 322 4.398319 CCAAACAACTATCCACCAAGACT 58.602 43.478 0.00 0.00 0.00 3.24
320 324 4.706842 AACAACTATCCACCAAGACTGT 57.293 40.909 0.00 0.00 0.00 3.55
324 328 5.721960 ACAACTATCCACCAAGACTGTATCT 59.278 40.000 0.00 0.00 40.46 1.98
331 335 1.414181 CCAAGACTGTATCTGGCCGAT 59.586 52.381 13.38 13.38 37.88 4.18
337 341 2.439507 ACTGTATCTGGCCGATTCCATT 59.560 45.455 13.95 5.24 35.22 3.16
344 348 2.244651 GCCGATTCCATTCCGACGG 61.245 63.158 7.84 7.84 42.63 4.79
365 369 1.654220 CGTGCAAGACTGTTTGGGG 59.346 57.895 0.00 0.00 0.00 4.96
369 373 0.110486 GCAAGACTGTTTGGGGGAGA 59.890 55.000 5.36 0.00 0.00 3.71
377 381 1.363246 GTTTGGGGGAGAAGGTCTCT 58.637 55.000 5.31 0.00 42.95 3.10
387 391 3.517500 GGAGAAGGTCTCTGAAACTCCAT 59.482 47.826 0.00 0.00 42.95 3.41
403 407 1.634973 TCCATCCTTTGTGATCCTGCA 59.365 47.619 0.00 0.00 0.00 4.41
427 431 4.468510 TGGGAAGAAGAGCGATAAGGTTTA 59.531 41.667 0.00 0.00 0.00 2.01
432 436 4.654262 AGAAGAGCGATAAGGTTTATGGGA 59.346 41.667 0.00 0.00 0.00 4.37
469 478 5.220815 CGACTACTCGCTACTGTTTTCCTAT 60.221 44.000 0.00 0.00 31.91 2.57
494 503 2.483106 CACGACTTCGACTACTTCCTCA 59.517 50.000 5.47 0.00 43.02 3.86
587 599 5.478407 CCACAACTTTGTCCTTTTCAACTT 58.522 37.500 0.00 0.00 39.91 2.66
588 600 5.931724 CCACAACTTTGTCCTTTTCAACTTT 59.068 36.000 0.00 0.00 39.91 2.66
692 749 1.060937 CGCGCTCACATGTTTAGCC 59.939 57.895 19.44 13.14 32.50 3.93
731 788 2.521105 TCTCAGCGATGTCATCATGG 57.479 50.000 13.22 1.54 34.06 3.66
733 790 2.958355 TCTCAGCGATGTCATCATGGTA 59.042 45.455 13.22 1.26 34.06 3.25
741 798 5.106594 GCGATGTCATCATGGTATATTTGCA 60.107 40.000 13.22 0.00 34.06 4.08
744 801 7.536281 CGATGTCATCATGGTATATTTGCAAAG 59.464 37.037 18.19 1.24 34.06 2.77
1019 1125 3.678529 GCCAGACACAACCACAACAAAAT 60.679 43.478 0.00 0.00 0.00 1.82
1230 1442 6.362820 GCGTTAAGATCTTAGCCTACATACAC 59.637 42.308 19.90 9.32 0.00 2.90
1243 1457 6.927381 AGCCTACATACACGTGATAATTAACC 59.073 38.462 25.01 3.34 0.00 2.85
1273 1500 6.203530 GCGGTGATAGATTCATCTGATTTCAA 59.796 38.462 0.00 0.00 37.76 2.69
1279 1507 4.940046 AGATTCATCTGATTTCAAGCGTGT 59.060 37.500 0.00 0.00 35.42 4.49
1326 1560 0.546122 ACAACTGCAACTCCTGGTCA 59.454 50.000 0.00 0.00 0.00 4.02
1493 1746 0.179124 AAGAACTGATCGCTCGCTCC 60.179 55.000 0.00 0.00 0.00 4.70
1495 1748 0.458543 GAACTGATCGCTCGCTCCAA 60.459 55.000 0.00 0.00 0.00 3.53
1496 1749 0.737715 AACTGATCGCTCGCTCCAAC 60.738 55.000 0.00 0.00 0.00 3.77
1497 1750 2.202610 TGATCGCTCGCTCCAACG 60.203 61.111 0.00 0.00 0.00 4.10
1498 1751 2.102357 GATCGCTCGCTCCAACGA 59.898 61.111 0.00 0.00 40.36 3.85
1666 2235 5.024555 GCGTCTCTGCTCAATCAAATAAAC 58.975 41.667 0.00 0.00 0.00 2.01
1712 2281 0.037605 GTACTGTCCAGTTCACCGGG 60.038 60.000 6.32 0.00 42.54 5.73
1780 2351 3.181510 GCGGTGCAAGTTGGAATAGTAAG 60.182 47.826 4.75 0.00 0.00 2.34
1783 2355 5.493809 GGTGCAAGTTGGAATAGTAAGGTA 58.506 41.667 4.75 0.00 0.00 3.08
1784 2356 5.941647 GGTGCAAGTTGGAATAGTAAGGTAA 59.058 40.000 4.75 0.00 0.00 2.85
1785 2357 6.431852 GGTGCAAGTTGGAATAGTAAGGTAAA 59.568 38.462 4.75 0.00 0.00 2.01
1786 2358 7.361799 GGTGCAAGTTGGAATAGTAAGGTAAAG 60.362 40.741 4.75 0.00 0.00 1.85
1787 2359 6.657541 TGCAAGTTGGAATAGTAAGGTAAAGG 59.342 38.462 4.75 0.00 0.00 3.11
1788 2360 6.095021 GCAAGTTGGAATAGTAAGGTAAAGGG 59.905 42.308 4.75 0.00 0.00 3.95
1789 2361 6.964876 AGTTGGAATAGTAAGGTAAAGGGT 57.035 37.500 0.00 0.00 0.00 4.34
1790 2362 6.718294 AGTTGGAATAGTAAGGTAAAGGGTG 58.282 40.000 0.00 0.00 0.00 4.61
1791 2363 6.273965 AGTTGGAATAGTAAGGTAAAGGGTGT 59.726 38.462 0.00 0.00 0.00 4.16
1792 2364 6.057321 TGGAATAGTAAGGTAAAGGGTGTG 57.943 41.667 0.00 0.00 0.00 3.82
1793 2365 5.045432 TGGAATAGTAAGGTAAAGGGTGTGG 60.045 44.000 0.00 0.00 0.00 4.17
1794 2366 2.873094 AGTAAGGTAAAGGGTGTGGC 57.127 50.000 0.00 0.00 0.00 5.01
1795 2367 2.345560 AGTAAGGTAAAGGGTGTGGCT 58.654 47.619 0.00 0.00 0.00 4.75
1796 2368 3.523792 AGTAAGGTAAAGGGTGTGGCTA 58.476 45.455 0.00 0.00 0.00 3.93
1797 2369 3.518303 AGTAAGGTAAAGGGTGTGGCTAG 59.482 47.826 0.00 0.00 0.00 3.42
1798 2370 1.286248 AGGTAAAGGGTGTGGCTAGG 58.714 55.000 0.00 0.00 0.00 3.02
1799 2371 0.989602 GGTAAAGGGTGTGGCTAGGT 59.010 55.000 0.00 0.00 0.00 3.08
1800 2372 1.065636 GGTAAAGGGTGTGGCTAGGTC 60.066 57.143 0.00 0.00 0.00 3.85
1801 2373 1.626825 GTAAAGGGTGTGGCTAGGTCA 59.373 52.381 0.00 0.00 0.00 4.02
1802 2374 0.400594 AAAGGGTGTGGCTAGGTCAC 59.599 55.000 0.00 0.00 38.79 3.67
1803 2375 0.766674 AAGGGTGTGGCTAGGTCACA 60.767 55.000 0.59 0.59 46.26 3.58
1807 2379 1.964448 TGTGGCTAGGTCACAGTCG 59.036 57.895 0.59 0.00 43.49 4.18
1808 2380 0.538746 TGTGGCTAGGTCACAGTCGA 60.539 55.000 0.59 0.00 43.49 4.20
1809 2381 0.109226 GTGGCTAGGTCACAGTCGAC 60.109 60.000 7.70 7.70 38.14 4.20
1810 2382 0.251209 TGGCTAGGTCACAGTCGACT 60.251 55.000 13.58 13.58 36.12 4.18
1822 2394 3.251479 CAGTCGACTGGGATTGAATCA 57.749 47.619 33.36 0.00 40.20 2.57
1823 2395 3.599343 CAGTCGACTGGGATTGAATCAA 58.401 45.455 33.36 0.00 40.20 2.57
1824 2396 4.194640 CAGTCGACTGGGATTGAATCAAT 58.805 43.478 33.36 8.39 40.20 2.57
1825 2397 4.637534 CAGTCGACTGGGATTGAATCAATT 59.362 41.667 33.36 0.00 40.20 2.32
1826 2398 4.878397 AGTCGACTGGGATTGAATCAATTC 59.122 41.667 19.30 7.86 33.90 2.17
1827 2399 4.878397 GTCGACTGGGATTGAATCAATTCT 59.122 41.667 13.45 0.00 33.90 2.40
1828 2400 5.007136 GTCGACTGGGATTGAATCAATTCTC 59.993 44.000 13.45 6.34 33.90 2.87
1829 2401 4.877823 CGACTGGGATTGAATCAATTCTCA 59.122 41.667 13.45 10.02 33.90 3.27
1830 2402 5.007430 CGACTGGGATTGAATCAATTCTCAG 59.993 44.000 22.17 22.17 36.51 3.35
1831 2403 5.824421 ACTGGGATTGAATCAATTCTCAGT 58.176 37.500 23.03 23.03 37.60 3.41
1832 2404 5.884792 ACTGGGATTGAATCAATTCTCAGTC 59.115 40.000 23.03 8.00 37.75 3.51
1833 2405 5.818887 TGGGATTGAATCAATTCTCAGTCA 58.181 37.500 13.45 0.83 33.90 3.41
1834 2406 6.247676 TGGGATTGAATCAATTCTCAGTCAA 58.752 36.000 13.45 0.00 33.90 3.18
1835 2407 6.376299 TGGGATTGAATCAATTCTCAGTCAAG 59.624 38.462 13.45 0.00 33.90 3.02
1836 2408 6.376581 GGGATTGAATCAATTCTCAGTCAAGT 59.623 38.462 13.45 0.00 33.90 3.16
1837 2409 7.249147 GGATTGAATCAATTCTCAGTCAAGTG 58.751 38.462 10.09 0.00 33.90 3.16
1838 2410 7.120285 GGATTGAATCAATTCTCAGTCAAGTGA 59.880 37.037 10.09 0.00 33.90 3.41
1839 2411 6.791887 TGAATCAATTCTCAGTCAAGTGAC 57.208 37.500 3.12 3.12 40.04 3.67
1840 2412 6.290605 TGAATCAATTCTCAGTCAAGTGACA 58.709 36.000 13.66 0.00 41.04 3.58
1841 2413 6.938596 TGAATCAATTCTCAGTCAAGTGACAT 59.061 34.615 13.66 0.00 41.04 3.06
1842 2414 8.096414 TGAATCAATTCTCAGTCAAGTGACATA 58.904 33.333 13.66 0.59 41.04 2.29
1843 2415 8.602328 GAATCAATTCTCAGTCAAGTGACATAG 58.398 37.037 13.66 9.75 39.26 2.23
1884 2456 9.787532 AAAGGAAAGCTAAAAAGAAAATTTTGC 57.212 25.926 8.47 3.64 34.51 3.68
1885 2457 8.504812 AGGAAAGCTAAAAAGAAAATTTTGCA 57.495 26.923 8.47 0.00 34.51 4.08
1886 2458 8.397906 AGGAAAGCTAAAAAGAAAATTTTGCAC 58.602 29.630 8.47 0.00 34.51 4.57
1887 2459 7.373180 GGAAAGCTAAAAAGAAAATTTTGCACG 59.627 33.333 8.47 0.00 34.51 5.34
1888 2460 6.285790 AGCTAAAAAGAAAATTTTGCACGG 57.714 33.333 8.47 0.00 34.51 4.94
1889 2461 5.815222 AGCTAAAAAGAAAATTTTGCACGGT 59.185 32.000 8.47 0.00 34.51 4.83
1890 2462 6.315144 AGCTAAAAAGAAAATTTTGCACGGTT 59.685 30.769 8.47 0.00 34.51 4.44
1891 2463 6.627276 GCTAAAAAGAAAATTTTGCACGGTTC 59.373 34.615 8.47 0.00 34.51 3.62
1892 2464 6.735678 AAAAAGAAAATTTTGCACGGTTCT 57.264 29.167 8.47 0.00 31.55 3.01
1893 2465 6.735678 AAAAGAAAATTTTGCACGGTTCTT 57.264 29.167 8.47 0.00 37.01 2.52
1894 2466 5.966636 AAGAAAATTTTGCACGGTTCTTC 57.033 34.783 8.47 0.00 31.40 2.87
1895 2467 5.004922 AGAAAATTTTGCACGGTTCTTCA 57.995 34.783 8.47 0.00 0.00 3.02
1896 2468 5.600696 AGAAAATTTTGCACGGTTCTTCAT 58.399 33.333 8.47 0.00 0.00 2.57
1897 2469 5.463061 AGAAAATTTTGCACGGTTCTTCATG 59.537 36.000 8.47 0.00 0.00 3.07
1898 2470 4.320608 AATTTTGCACGGTTCTTCATGT 57.679 36.364 0.00 0.00 0.00 3.21
1899 2471 5.446143 AATTTTGCACGGTTCTTCATGTA 57.554 34.783 0.00 0.00 0.00 2.29
1900 2472 4.902443 TTTTGCACGGTTCTTCATGTAA 57.098 36.364 0.00 0.00 0.00 2.41
1901 2473 4.481930 TTTGCACGGTTCTTCATGTAAG 57.518 40.909 0.00 0.00 36.45 2.34
1902 2474 3.394674 TGCACGGTTCTTCATGTAAGA 57.605 42.857 0.00 0.00 42.62 2.10
1903 2475 3.937814 TGCACGGTTCTTCATGTAAGAT 58.062 40.909 7.97 0.00 43.75 2.40
1904 2476 3.932710 TGCACGGTTCTTCATGTAAGATC 59.067 43.478 7.97 7.51 43.75 2.75
1905 2477 3.932710 GCACGGTTCTTCATGTAAGATCA 59.067 43.478 7.97 0.00 43.75 2.92
1906 2478 4.391830 GCACGGTTCTTCATGTAAGATCAA 59.608 41.667 7.97 0.00 43.75 2.57
1907 2479 5.671329 GCACGGTTCTTCATGTAAGATCAAC 60.671 44.000 7.97 0.00 43.75 3.18
1908 2480 5.408299 CACGGTTCTTCATGTAAGATCAACA 59.592 40.000 3.68 3.68 43.75 3.33
1909 2481 5.995282 ACGGTTCTTCATGTAAGATCAACAA 59.005 36.000 5.17 0.00 43.75 2.83
1910 2482 6.485313 ACGGTTCTTCATGTAAGATCAACAAA 59.515 34.615 5.17 0.00 43.75 2.83
1911 2483 7.174946 ACGGTTCTTCATGTAAGATCAACAAAT 59.825 33.333 5.17 0.00 43.75 2.32
1912 2484 8.664798 CGGTTCTTCATGTAAGATCAACAAATA 58.335 33.333 5.17 0.00 43.75 1.40
1929 2501 8.817100 TCAACAAATATAGCATTAACTGAGACG 58.183 33.333 0.00 0.00 0.00 4.18
1930 2502 8.604035 CAACAAATATAGCATTAACTGAGACGT 58.396 33.333 0.00 0.00 0.00 4.34
1931 2503 9.811995 AACAAATATAGCATTAACTGAGACGTA 57.188 29.630 0.00 0.00 0.00 3.57
1932 2504 9.811995 ACAAATATAGCATTAACTGAGACGTAA 57.188 29.630 0.00 0.00 0.00 3.18
1937 2509 6.893958 AGCATTAACTGAGACGTAATCAAG 57.106 37.500 4.66 2.58 0.00 3.02
1938 2510 6.398918 AGCATTAACTGAGACGTAATCAAGT 58.601 36.000 4.66 3.09 0.00 3.16
1939 2511 6.531948 AGCATTAACTGAGACGTAATCAAGTC 59.468 38.462 4.66 0.00 37.63 3.01
1946 2518 4.343811 AGACGTAATCAAGTCTCAGTCG 57.656 45.455 0.00 0.00 43.52 4.18
1947 2519 4.001652 AGACGTAATCAAGTCTCAGTCGA 58.998 43.478 0.00 0.00 43.52 4.20
1948 2520 4.080969 ACGTAATCAAGTCTCAGTCGAC 57.919 45.455 7.70 7.70 0.00 4.20
1949 2521 3.752222 ACGTAATCAAGTCTCAGTCGACT 59.248 43.478 13.58 13.58 45.73 4.18
1950 2522 4.092120 CGTAATCAAGTCTCAGTCGACTG 58.908 47.826 34.76 34.76 43.14 3.51
1966 2538 6.946229 GTCGACTGAGACTTAGCAAAATAA 57.054 37.500 8.70 0.00 38.09 1.40
1977 2549 9.959721 AGACTTAGCAAAATAAGATAAACTCCA 57.040 29.630 0.74 0.00 36.46 3.86
1983 2555 9.243105 AGCAAAATAAGATAAACTCCAGCTTTA 57.757 29.630 0.00 0.00 0.00 1.85
1998 2570 8.515414 ACTCCAGCTTTAAATCAAAAGATACAC 58.485 33.333 0.69 0.00 38.50 2.90
2001 2573 8.081633 CCAGCTTTAAATCAAAAGATACACACA 58.918 33.333 0.69 0.00 38.50 3.72
2079 3125 8.690884 TGAAAAGGAAGATCAGATCTACTACTG 58.309 37.037 13.63 0.00 39.08 2.74
2080 3126 8.602472 AAAAGGAAGATCAGATCTACTACTGT 57.398 34.615 13.63 0.00 39.08 3.55
2084 3130 9.702253 AGGAAGATCAGATCTACTACTGTAAAA 57.298 33.333 13.63 0.00 39.08 1.52
2088 3134 8.908903 AGATCAGATCTACTACTGTAAAACAGG 58.091 37.037 11.57 0.00 43.40 4.00
2113 3159 2.544277 CCAGTGACAGGTGCAAAACATG 60.544 50.000 0.00 0.00 46.11 3.21
2130 3327 4.778213 ACATGTATCAGTAACCTGCCAT 57.222 40.909 0.00 0.00 38.66 4.40
2131 3328 4.708177 ACATGTATCAGTAACCTGCCATC 58.292 43.478 0.00 0.00 38.66 3.51
2138 3335 6.605471 ATCAGTAACCTGCCATCGATAATA 57.395 37.500 0.00 0.00 38.66 0.98
2146 3504 6.100004 ACCTGCCATCGATAATATAGTTTCG 58.900 40.000 6.69 6.69 0.00 3.46
2195 4309 2.649034 CTGGCACTGGCAAGCAAG 59.351 61.111 12.79 7.62 43.71 4.01
2213 4327 2.526120 GCCACCGATAGCGTTGCTC 61.526 63.158 0.00 0.00 40.44 4.26
2238 4352 5.406175 GGTTAAAAGAAAATAACGTTGCCCC 59.594 40.000 11.99 0.00 33.74 5.80
2239 4353 4.948341 AAAAGAAAATAACGTTGCCCCT 57.052 36.364 11.99 0.00 0.00 4.79
2240 4354 3.934457 AAGAAAATAACGTTGCCCCTG 57.066 42.857 11.99 0.00 0.00 4.45
2241 4355 2.871453 AGAAAATAACGTTGCCCCTGT 58.129 42.857 11.99 0.00 0.00 4.00
2242 4356 2.556622 AGAAAATAACGTTGCCCCTGTG 59.443 45.455 11.99 0.00 0.00 3.66
2245 4359 1.989706 ATAACGTTGCCCCTGTGTTT 58.010 45.000 11.99 0.00 0.00 2.83
2247 4361 1.314730 AACGTTGCCCCTGTGTTTAG 58.685 50.000 0.00 0.00 0.00 1.85
2249 4363 0.889186 CGTTGCCCCTGTGTTTAGCT 60.889 55.000 0.00 0.00 0.00 3.32
2251 4365 1.686587 GTTGCCCCTGTGTTTAGCTTT 59.313 47.619 0.00 0.00 0.00 3.51
2252 4366 2.080654 TGCCCCTGTGTTTAGCTTTT 57.919 45.000 0.00 0.00 0.00 2.27
2275 4389 5.523438 TTTCTTTGCGAAAAATAGTGGGT 57.477 34.783 0.00 0.00 38.62 4.51
2276 4390 6.636562 TTTCTTTGCGAAAAATAGTGGGTA 57.363 33.333 0.00 0.00 38.62 3.69
2277 4391 6.827586 TTCTTTGCGAAAAATAGTGGGTAT 57.172 33.333 0.00 0.00 0.00 2.73
2278 4392 6.827586 TCTTTGCGAAAAATAGTGGGTATT 57.172 33.333 0.00 0.00 32.21 1.89
2279 4393 7.222000 TCTTTGCGAAAAATAGTGGGTATTT 57.778 32.000 0.00 0.00 42.22 1.40
2281 4395 8.962679 TCTTTGCGAAAAATAGTGGGTATTTAT 58.037 29.630 0.00 0.00 39.95 1.40
2282 4396 9.581099 CTTTGCGAAAAATAGTGGGTATTTATT 57.419 29.630 0.00 0.00 39.95 1.40
2283 4397 9.575783 TTTGCGAAAAATAGTGGGTATTTATTC 57.424 29.630 0.00 0.00 39.95 1.75
2284 4398 7.708998 TGCGAAAAATAGTGGGTATTTATTCC 58.291 34.615 0.00 0.00 39.95 3.01
2285 4399 7.558444 TGCGAAAAATAGTGGGTATTTATTCCT 59.442 33.333 0.00 0.00 39.95 3.36
2286 4400 8.074370 GCGAAAAATAGTGGGTATTTATTCCTC 58.926 37.037 0.00 0.00 39.95 3.71
2287 4401 9.338622 CGAAAAATAGTGGGTATTTATTCCTCT 57.661 33.333 0.00 0.00 39.95 3.69
2295 4409 9.004231 AGTGGGTATTTATTCCTCTGAAATAGT 57.996 33.333 0.00 0.00 33.32 2.12
2324 4438 6.546034 ACTCCTAATACAAAAGTTTGCACTGT 59.454 34.615 3.68 0.00 41.79 3.55
2325 4439 6.966021 TCCTAATACAAAAGTTTGCACTGTC 58.034 36.000 3.68 0.00 41.79 3.51
2326 4440 6.770785 TCCTAATACAAAAGTTTGCACTGTCT 59.229 34.615 3.68 0.00 41.79 3.41
2328 4442 3.508744 ACAAAAGTTTGCACTGTCTGG 57.491 42.857 3.68 0.00 41.79 3.86
2329 4443 3.088532 ACAAAAGTTTGCACTGTCTGGA 58.911 40.909 3.68 0.00 41.79 3.86
2331 4445 3.782889 AAAGTTTGCACTGTCTGGAAC 57.217 42.857 0.00 0.00 31.60 3.62
2332 4446 2.717639 AGTTTGCACTGTCTGGAACT 57.282 45.000 0.00 0.00 28.22 3.01
2334 4448 1.261619 GTTTGCACTGTCTGGAACTCG 59.738 52.381 0.00 0.00 28.22 4.18
2335 4449 0.249868 TTGCACTGTCTGGAACTCGG 60.250 55.000 0.00 0.00 0.00 4.63
2336 4450 1.367840 GCACTGTCTGGAACTCGGT 59.632 57.895 0.00 0.00 0.00 4.69
2337 4451 0.946221 GCACTGTCTGGAACTCGGTG 60.946 60.000 0.00 0.00 0.00 4.94
2339 4453 1.367471 CTGTCTGGAACTCGGTGCA 59.633 57.895 0.00 0.00 0.00 4.57
2340 4454 0.249868 CTGTCTGGAACTCGGTGCAA 60.250 55.000 0.00 0.00 0.00 4.08
2352 4466 2.804856 GTGCAACCAACAAGCGGT 59.195 55.556 0.00 0.00 38.85 5.68
2354 4468 2.658268 GCAACCAACAAGCGGTGC 60.658 61.111 0.00 0.00 36.67 5.01
2356 4470 1.791103 GCAACCAACAAGCGGTGCTA 61.791 55.000 0.00 0.00 38.25 3.49
2357 4471 0.040425 CAACCAACAAGCGGTGCTAC 60.040 55.000 0.00 0.00 38.25 3.58
2358 4472 1.170290 AACCAACAAGCGGTGCTACC 61.170 55.000 0.00 0.00 38.25 3.18
2359 4473 1.302511 CCAACAAGCGGTGCTACCT 60.303 57.895 0.00 0.00 38.25 3.08
2360 4474 1.298859 CCAACAAGCGGTGCTACCTC 61.299 60.000 0.00 0.00 38.25 3.85
2361 4475 1.003718 AACAAGCGGTGCTACCTCC 60.004 57.895 0.00 0.00 38.25 4.30
2363 4477 1.221840 CAAGCGGTGCTACCTCCAT 59.778 57.895 0.00 0.00 38.25 3.41
2364 4478 0.464036 CAAGCGGTGCTACCTCCATA 59.536 55.000 0.00 0.00 38.25 2.74
2365 4479 1.070758 CAAGCGGTGCTACCTCCATAT 59.929 52.381 0.00 0.00 38.25 1.78
2366 4480 0.969894 AGCGGTGCTACCTCCATATC 59.030 55.000 0.00 0.00 36.99 1.63
2367 4481 0.969894 GCGGTGCTACCTCCATATCT 59.030 55.000 4.21 0.00 35.66 1.98
2368 4482 1.067495 GCGGTGCTACCTCCATATCTC 60.067 57.143 4.21 0.00 35.66 2.75
2370 4484 1.903183 GGTGCTACCTCCATATCTCCC 59.097 57.143 0.00 0.00 34.73 4.30
2371 4485 2.493687 GGTGCTACCTCCATATCTCCCT 60.494 54.545 0.00 0.00 34.73 4.20
2373 4487 4.573087 GGTGCTACCTCCATATCTCCCTAT 60.573 50.000 0.00 0.00 34.73 2.57
2374 4488 5.340947 GGTGCTACCTCCATATCTCCCTATA 60.341 48.000 0.00 0.00 34.73 1.31
2375 4489 6.377912 GTGCTACCTCCATATCTCCCTATAT 58.622 44.000 0.00 0.00 0.00 0.86
2376 4490 6.841755 GTGCTACCTCCATATCTCCCTATATT 59.158 42.308 0.00 0.00 0.00 1.28
2377 4491 8.005388 GTGCTACCTCCATATCTCCCTATATTA 58.995 40.741 0.00 0.00 0.00 0.98
2378 4492 8.574853 TGCTACCTCCATATCTCCCTATATTAA 58.425 37.037 0.00 0.00 0.00 1.40
2391 4505 8.550585 TCTCCCTATATTAACTAGACTAGGAGC 58.449 40.741 14.03 0.00 0.00 4.70
2392 4506 8.228353 TCCCTATATTAACTAGACTAGGAGCA 57.772 38.462 14.03 0.00 0.00 4.26
2395 4509 9.523168 CCTATATTAACTAGACTAGGAGCAACT 57.477 37.037 14.03 0.00 0.00 3.16
2400 4514 9.649316 ATTAACTAGACTAGGAGCAACTCTATT 57.351 33.333 14.03 0.00 0.00 1.73
2401 4515 7.576861 AACTAGACTAGGAGCAACTCTATTC 57.423 40.000 14.03 0.00 0.00 1.75
2402 4516 6.664714 ACTAGACTAGGAGCAACTCTATTCA 58.335 40.000 14.03 0.00 0.00 2.57
2403 4517 5.845391 AGACTAGGAGCAACTCTATTCAC 57.155 43.478 0.00 0.00 0.00 3.18
2404 4518 5.515106 AGACTAGGAGCAACTCTATTCACT 58.485 41.667 0.00 0.00 0.00 3.41
2405 4519 6.664714 AGACTAGGAGCAACTCTATTCACTA 58.335 40.000 0.00 0.00 0.00 2.74
2406 4520 6.770785 AGACTAGGAGCAACTCTATTCACTAG 59.229 42.308 0.00 0.00 33.49 2.57
2407 4521 6.428295 ACTAGGAGCAACTCTATTCACTAGT 58.572 40.000 0.00 0.00 35.20 2.57
2408 4522 7.575505 ACTAGGAGCAACTCTATTCACTAGTA 58.424 38.462 0.00 0.00 37.45 1.82
2409 4523 6.952773 AGGAGCAACTCTATTCACTAGTAG 57.047 41.667 0.00 0.00 0.00 2.57
2410 4524 6.664714 AGGAGCAACTCTATTCACTAGTAGA 58.335 40.000 3.59 0.00 0.00 2.59
2411 4525 7.120051 AGGAGCAACTCTATTCACTAGTAGAA 58.880 38.462 3.59 2.62 0.00 2.10
2412 4526 7.616150 AGGAGCAACTCTATTCACTAGTAGAAA 59.384 37.037 3.59 0.00 0.00 2.52
2413 4527 8.251721 GGAGCAACTCTATTCACTAGTAGAAAA 58.748 37.037 3.59 0.00 0.00 2.29
2414 4528 8.989653 AGCAACTCTATTCACTAGTAGAAAAC 57.010 34.615 3.59 0.00 0.00 2.43
2415 4529 8.585881 AGCAACTCTATTCACTAGTAGAAAACA 58.414 33.333 3.59 1.87 0.00 2.83
2416 4530 8.865001 GCAACTCTATTCACTAGTAGAAAACAG 58.135 37.037 3.59 8.95 0.00 3.16
2419 4533 8.741841 ACTCTATTCACTAGTAGAAAACAGACC 58.258 37.037 3.59 0.00 0.00 3.85
2420 4534 8.880991 TCTATTCACTAGTAGAAAACAGACCT 57.119 34.615 3.59 0.00 0.00 3.85
2421 4535 9.310449 TCTATTCACTAGTAGAAAACAGACCTT 57.690 33.333 3.59 0.00 0.00 3.50
2422 4536 9.930693 CTATTCACTAGTAGAAAACAGACCTTT 57.069 33.333 3.59 0.00 0.00 3.11
2423 4537 8.834749 ATTCACTAGTAGAAAACAGACCTTTC 57.165 34.615 3.59 0.00 33.75 2.62
2424 4538 6.444633 TCACTAGTAGAAAACAGACCTTTCG 58.555 40.000 3.59 0.00 37.76 3.46
2425 4539 6.040166 TCACTAGTAGAAAACAGACCTTTCGT 59.960 38.462 3.59 0.00 37.76 3.85
2426 4540 6.362820 CACTAGTAGAAAACAGACCTTTCGTC 59.637 42.308 3.59 0.00 42.32 4.20
2427 4541 4.629092 AGTAGAAAACAGACCTTTCGTCC 58.371 43.478 0.00 0.00 43.08 4.79
2428 4542 3.840124 AGAAAACAGACCTTTCGTCCT 57.160 42.857 0.00 0.00 43.08 3.85
2429 4543 3.729966 AGAAAACAGACCTTTCGTCCTC 58.270 45.455 0.00 0.00 43.08 3.71
2430 4544 2.545537 AAACAGACCTTTCGTCCTCC 57.454 50.000 0.00 0.00 43.08 4.30
2431 4545 0.685660 AACAGACCTTTCGTCCTCCC 59.314 55.000 0.00 0.00 43.08 4.30
2432 4546 1.192803 ACAGACCTTTCGTCCTCCCC 61.193 60.000 0.00 0.00 43.08 4.81
2433 4547 0.905337 CAGACCTTTCGTCCTCCCCT 60.905 60.000 0.00 0.00 43.08 4.79
2434 4548 0.178900 AGACCTTTCGTCCTCCCCTT 60.179 55.000 0.00 0.00 43.08 3.95
2435 4549 0.691332 GACCTTTCGTCCTCCCCTTT 59.309 55.000 0.00 0.00 35.23 3.11
2436 4550 1.904537 GACCTTTCGTCCTCCCCTTTA 59.095 52.381 0.00 0.00 35.23 1.85
2437 4551 1.907255 ACCTTTCGTCCTCCCCTTTAG 59.093 52.381 0.00 0.00 0.00 1.85
2438 4552 1.907255 CCTTTCGTCCTCCCCTTTAGT 59.093 52.381 0.00 0.00 0.00 2.24
2439 4553 2.093606 CCTTTCGTCCTCCCCTTTAGTC 60.094 54.545 0.00 0.00 0.00 2.59
2440 4554 1.565067 TTCGTCCTCCCCTTTAGTCC 58.435 55.000 0.00 0.00 0.00 3.85
2441 4555 0.325016 TCGTCCTCCCCTTTAGTCCC 60.325 60.000 0.00 0.00 0.00 4.46
2442 4556 0.616679 CGTCCTCCCCTTTAGTCCCA 60.617 60.000 0.00 0.00 0.00 4.37
2443 4557 1.205055 GTCCTCCCCTTTAGTCCCAG 58.795 60.000 0.00 0.00 0.00 4.45
2444 4558 0.797579 TCCTCCCCTTTAGTCCCAGT 59.202 55.000 0.00 0.00 0.00 4.00
2445 4559 1.153565 TCCTCCCCTTTAGTCCCAGTT 59.846 52.381 0.00 0.00 0.00 3.16
2446 4560 1.993301 CCTCCCCTTTAGTCCCAGTTT 59.007 52.381 0.00 0.00 0.00 2.66
2447 4561 2.290960 CCTCCCCTTTAGTCCCAGTTTG 60.291 54.545 0.00 0.00 0.00 2.93
2448 4562 2.642807 CTCCCCTTTAGTCCCAGTTTGA 59.357 50.000 0.00 0.00 0.00 2.69
2449 4563 3.265489 TCCCCTTTAGTCCCAGTTTGAT 58.735 45.455 0.00 0.00 0.00 2.57
2450 4564 3.660669 TCCCCTTTAGTCCCAGTTTGATT 59.339 43.478 0.00 0.00 0.00 2.57
2451 4565 4.853276 TCCCCTTTAGTCCCAGTTTGATTA 59.147 41.667 0.00 0.00 0.00 1.75
2452 4566 4.948004 CCCCTTTAGTCCCAGTTTGATTAC 59.052 45.833 0.00 0.00 0.00 1.89
2453 4567 4.634443 CCCTTTAGTCCCAGTTTGATTACG 59.366 45.833 0.00 0.00 0.00 3.18
2454 4568 4.634443 CCTTTAGTCCCAGTTTGATTACGG 59.366 45.833 0.00 0.00 0.00 4.02
2455 4569 2.109425 AGTCCCAGTTTGATTACGGC 57.891 50.000 0.00 0.00 0.00 5.68
2456 4570 1.092348 GTCCCAGTTTGATTACGGCC 58.908 55.000 0.00 0.00 0.00 6.13
2457 4571 0.034863 TCCCAGTTTGATTACGGCCC 60.035 55.000 0.00 0.00 0.00 5.80
2458 4572 1.373590 CCCAGTTTGATTACGGCCCG 61.374 60.000 0.00 0.00 0.00 6.13
2459 4573 0.391927 CCAGTTTGATTACGGCCCGA 60.392 55.000 11.71 0.00 0.00 5.14
2460 4574 1.444836 CAGTTTGATTACGGCCCGAA 58.555 50.000 11.71 0.00 0.00 4.30
2461 4575 1.807742 CAGTTTGATTACGGCCCGAAA 59.192 47.619 11.71 0.00 0.00 3.46
2462 4576 1.808343 AGTTTGATTACGGCCCGAAAC 59.192 47.619 11.71 9.85 0.00 2.78
2463 4577 1.808343 GTTTGATTACGGCCCGAAACT 59.192 47.619 11.71 0.00 0.00 2.66
2464 4578 3.002102 GTTTGATTACGGCCCGAAACTA 58.998 45.455 11.71 0.00 0.00 2.24
2465 4579 3.331478 TTGATTACGGCCCGAAACTAA 57.669 42.857 11.71 0.00 0.00 2.24
2466 4580 3.547054 TGATTACGGCCCGAAACTAAT 57.453 42.857 11.71 2.83 0.00 1.73
2467 4581 3.199677 TGATTACGGCCCGAAACTAATG 58.800 45.455 11.71 0.00 0.00 1.90
2468 4582 2.766345 TTACGGCCCGAAACTAATGT 57.234 45.000 11.71 0.00 0.00 2.71
2469 4583 2.012937 TACGGCCCGAAACTAATGTG 57.987 50.000 11.71 0.00 0.00 3.21
2470 4584 0.322322 ACGGCCCGAAACTAATGTGA 59.678 50.000 11.71 0.00 0.00 3.58
2471 4585 0.725117 CGGCCCGAAACTAATGTGAC 59.275 55.000 0.00 0.00 0.00 3.67
2472 4586 1.092348 GGCCCGAAACTAATGTGACC 58.908 55.000 0.00 0.00 0.00 4.02
2473 4587 1.612199 GGCCCGAAACTAATGTGACCA 60.612 52.381 0.00 0.00 0.00 4.02
2474 4588 2.365582 GCCCGAAACTAATGTGACCAT 58.634 47.619 0.00 0.00 0.00 3.55
2475 4589 2.752903 GCCCGAAACTAATGTGACCATT 59.247 45.455 0.00 0.00 43.62 3.16
2476 4590 3.942748 GCCCGAAACTAATGTGACCATTA 59.057 43.478 0.00 0.00 41.50 1.90
2483 4597 2.710096 AATGTGACCATTAGTCCCGG 57.290 50.000 0.00 0.00 45.68 5.73
2484 4598 1.580059 ATGTGACCATTAGTCCCGGT 58.420 50.000 0.00 0.00 45.68 5.28
2485 4599 1.354101 TGTGACCATTAGTCCCGGTT 58.646 50.000 0.00 0.00 45.68 4.44
2486 4600 1.276989 TGTGACCATTAGTCCCGGTTC 59.723 52.381 0.00 0.00 45.68 3.62
2487 4601 0.906775 TGACCATTAGTCCCGGTTCC 59.093 55.000 0.00 0.00 45.68 3.62
2488 4602 0.906775 GACCATTAGTCCCGGTTCCA 59.093 55.000 0.00 0.00 39.84 3.53
2489 4603 1.279846 GACCATTAGTCCCGGTTCCAA 59.720 52.381 0.00 0.00 39.84 3.53
2490 4604 1.003928 ACCATTAGTCCCGGTTCCAAC 59.996 52.381 0.00 0.00 0.00 3.77
2491 4605 1.365699 CATTAGTCCCGGTTCCAACG 58.634 55.000 0.00 0.00 0.00 4.10
2497 4611 2.975536 CCGGTTCCAACGGCTAGA 59.024 61.111 0.00 0.00 45.34 2.43
2498 4612 1.294138 CCGGTTCCAACGGCTAGAA 59.706 57.895 0.00 0.00 45.34 2.10
2499 4613 1.017701 CCGGTTCCAACGGCTAGAAC 61.018 60.000 0.00 0.00 45.34 3.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
49 52 9.503427 GTTAATAATGTCATCTTGCCACTTAAC 57.497 33.333 0.00 0.00 0.00 2.01
84 87 5.357878 AGTGTGCATGAGTTTTCTTTTCTCA 59.642 36.000 0.00 0.00 41.43 3.27
110 113 7.102401 GCTTTGTCGCGCTATTTTATTTTTAC 58.898 34.615 5.56 0.00 0.00 2.01
111 114 6.802348 TGCTTTGTCGCGCTATTTTATTTTTA 59.198 30.769 5.56 0.00 0.00 1.52
172 176 4.114794 GCATGCACCCATTTTCTCATAAC 58.885 43.478 14.21 0.00 0.00 1.89
199 203 4.033009 TCCAGTTCTCCATCTTCTATGCA 58.967 43.478 0.00 0.00 0.00 3.96
204 208 4.360889 ACATCTCCAGTTCTCCATCTTCT 58.639 43.478 0.00 0.00 0.00 2.85
233 237 3.339141 CTTTCCCTAGCTTGGACTTGTC 58.661 50.000 16.43 0.00 0.00 3.18
245 249 2.637872 TGGTCTTGTGTCCTTTCCCTAG 59.362 50.000 0.00 0.00 0.00 3.02
246 250 2.696775 TGGTCTTGTGTCCTTTCCCTA 58.303 47.619 0.00 0.00 0.00 3.53
254 258 2.084546 GCATACCTTGGTCTTGTGTCC 58.915 52.381 0.00 0.00 0.00 4.02
278 282 7.123355 TGTTTGGGATGAACTTCTTTGATTT 57.877 32.000 0.00 0.00 0.00 2.17
286 290 5.710099 TGGATAGTTGTTTGGGATGAACTTC 59.290 40.000 0.00 0.00 31.25 3.01
292 296 3.696045 TGGTGGATAGTTGTTTGGGATG 58.304 45.455 0.00 0.00 0.00 3.51
303 307 4.651503 CCAGATACAGTCTTGGTGGATAGT 59.348 45.833 0.00 0.00 34.00 2.12
314 318 1.689273 GGAATCGGCCAGATACAGTCT 59.311 52.381 2.24 0.00 38.98 3.24
318 322 2.224523 GGAATGGAATCGGCCAGATACA 60.225 50.000 2.24 9.91 42.15 2.29
320 324 1.001974 CGGAATGGAATCGGCCAGATA 59.998 52.381 2.24 0.00 42.15 1.98
324 328 1.153249 GTCGGAATGGAATCGGCCA 60.153 57.895 2.24 0.00 43.23 5.36
344 348 2.005537 CAAACAGTCTTGCACGCGC 61.006 57.895 5.73 0.00 39.24 6.86
353 357 1.068121 CCTTCTCCCCCAAACAGTCT 58.932 55.000 0.00 0.00 0.00 3.24
365 369 2.900546 TGGAGTTTCAGAGACCTTCTCC 59.099 50.000 0.00 0.00 44.42 3.71
369 373 3.525862 AGGATGGAGTTTCAGAGACCTT 58.474 45.455 0.00 0.00 0.00 3.50
377 381 4.043310 AGGATCACAAAGGATGGAGTTTCA 59.957 41.667 0.00 0.00 0.00 2.69
387 391 1.341285 CCCATGCAGGATCACAAAGGA 60.341 52.381 0.00 0.00 41.22 3.36
403 407 3.041946 ACCTTATCGCTCTTCTTCCCAT 58.958 45.455 0.00 0.00 0.00 4.00
427 431 4.514577 CGCCGAGACGCTTCCCAT 62.515 66.667 0.00 0.00 0.00 4.00
464 473 1.741706 GTCGAAGTCGTGGACATAGGA 59.258 52.381 0.00 0.00 40.80 2.94
469 478 1.888215 AGTAGTCGAAGTCGTGGACA 58.112 50.000 3.98 0.00 37.43 4.02
494 503 0.398098 ATATCGTCGGTGGGGAGGTT 60.398 55.000 0.00 0.00 0.00 3.50
532 544 4.354587 CTTCAACAGCCTTCTTGTTTGAC 58.645 43.478 0.00 0.00 0.00 3.18
560 572 0.395173 AAGGACAAAGTTGTGGCGGT 60.395 50.000 0.42 0.00 42.43 5.68
587 599 6.222718 AGAGGGATGGATAGATCATACCCTAA 59.777 42.308 15.00 0.00 44.74 2.69
588 600 5.743619 AGAGGGATGGATAGATCATACCCTA 59.256 44.000 15.00 0.00 44.74 3.53
603 620 2.965831 TGAACGGATAAGAGAGGGATGG 59.034 50.000 0.00 0.00 0.00 3.51
653 709 6.197842 GCGCGTACTAAGTATAGAACACAAAT 59.802 38.462 8.43 0.00 33.15 2.32
666 723 1.201647 ACATGTGAGCGCGTACTAAGT 59.798 47.619 8.43 9.91 0.00 2.24
676 733 1.009829 GAGGGCTAAACATGTGAGCG 58.990 55.000 20.85 4.20 37.07 5.03
692 749 7.384660 GCTGAGAATATTAATCTCACACTGAGG 59.615 40.741 7.26 0.00 46.23 3.86
715 772 6.540205 CAAATATACCATGATGACATCGCTG 58.460 40.000 10.79 10.17 34.15 5.18
798 856 1.078426 GTCCAGTGCACGCCCTATT 60.078 57.895 12.01 0.00 0.00 1.73
799 857 2.584608 GTCCAGTGCACGCCCTAT 59.415 61.111 12.01 0.00 0.00 2.57
930 1027 6.082338 GCCAATTTTCTGCGTCATATATCAG 58.918 40.000 0.00 0.00 0.00 2.90
1019 1125 0.528017 GTCTGCTCGTGGAGTGATGA 59.472 55.000 5.89 0.00 33.13 2.92
1180 1320 5.151297 TCACAAAGATGCAGTCAGATGTA 57.849 39.130 0.00 0.00 0.00 2.29
1230 1442 3.433709 CGCCATCGGTTAATTATCACG 57.566 47.619 0.00 0.00 0.00 4.35
1243 1457 2.438868 TGAATCTATCACCGCCATCG 57.561 50.000 0.00 0.00 31.50 3.84
1261 1488 3.485633 CACACACGCTTGAAATCAGATG 58.514 45.455 0.00 0.00 0.00 2.90
1273 1500 1.002468 GAAATTGTCTGCACACACGCT 60.002 47.619 0.00 0.00 29.76 5.07
1279 1507 1.879380 CTTCGGGAAATTGTCTGCACA 59.121 47.619 0.00 0.00 0.00 4.57
1326 1560 1.384191 GTCACAGAATTGGGCCCCT 59.616 57.895 22.27 5.74 0.00 4.79
1493 1746 9.430838 CTTATTTATTTTCTGCTCATCTCGTTG 57.569 33.333 0.00 0.00 0.00 4.10
1495 1748 8.948631 TCTTATTTATTTTCTGCTCATCTCGT 57.051 30.769 0.00 0.00 0.00 4.18
1503 1780 7.336931 TCGGAGCTTTCTTATTTATTTTCTGCT 59.663 33.333 0.00 0.00 0.00 4.24
1506 1783 7.548075 TCGTCGGAGCTTTCTTATTTATTTTCT 59.452 33.333 0.00 0.00 0.00 2.52
1666 2235 6.519353 TGTATCGTACAAACAAACTGACTG 57.481 37.500 0.00 0.00 35.38 3.51
1682 2251 5.401531 ACTGGACAGTACAAATGTATCGT 57.598 39.130 2.58 0.00 40.43 3.73
1712 2281 1.870167 GCATCGAGAAGGATCCGTTCC 60.870 57.143 5.98 0.00 45.85 3.62
1765 2336 7.173032 CACCCTTTACCTTACTATTCCAACTT 58.827 38.462 0.00 0.00 0.00 2.66
1769 2340 5.045432 CCACACCCTTTACCTTACTATTCCA 60.045 44.000 0.00 0.00 0.00 3.53
1780 2351 0.989602 ACCTAGCCACACCCTTTACC 59.010 55.000 0.00 0.00 0.00 2.85
1783 2355 0.400594 GTGACCTAGCCACACCCTTT 59.599 55.000 8.16 0.00 34.81 3.11
1784 2356 0.766674 TGTGACCTAGCCACACCCTT 60.767 55.000 10.85 0.00 39.36 3.95
1785 2357 1.152118 TGTGACCTAGCCACACCCT 60.152 57.895 10.85 0.00 39.36 4.34
1786 2358 1.296715 CTGTGACCTAGCCACACCC 59.703 63.158 10.85 0.00 39.36 4.61
1787 2359 0.037232 GACTGTGACCTAGCCACACC 60.037 60.000 10.85 4.61 39.36 4.16
1788 2360 0.388649 CGACTGTGACCTAGCCACAC 60.389 60.000 10.85 8.15 39.36 3.82
1789 2361 0.538746 TCGACTGTGACCTAGCCACA 60.539 55.000 13.31 13.31 41.68 4.17
1790 2362 0.109226 GTCGACTGTGACCTAGCCAC 60.109 60.000 8.70 6.56 32.61 5.01
1791 2363 0.251209 AGTCGACTGTGACCTAGCCA 60.251 55.000 19.30 0.00 39.77 4.75
1792 2364 0.171455 CAGTCGACTGTGACCTAGCC 59.829 60.000 32.77 0.00 39.77 3.93
1793 2365 0.171455 CCAGTCGACTGTGACCTAGC 59.829 60.000 36.37 0.00 42.27 3.42
1794 2366 0.811915 CCCAGTCGACTGTGACCTAG 59.188 60.000 36.37 22.35 42.27 3.02
1795 2367 0.402887 TCCCAGTCGACTGTGACCTA 59.597 55.000 36.37 13.11 42.27 3.08
1796 2368 0.251832 ATCCCAGTCGACTGTGACCT 60.252 55.000 36.37 19.17 42.27 3.85
1797 2369 0.608640 AATCCCAGTCGACTGTGACC 59.391 55.000 36.37 1.59 42.27 4.02
1798 2370 1.272490 TCAATCCCAGTCGACTGTGAC 59.728 52.381 36.37 3.02 42.27 3.67
1799 2371 1.627864 TCAATCCCAGTCGACTGTGA 58.372 50.000 36.37 32.74 42.27 3.58
1800 2372 2.455674 TTCAATCCCAGTCGACTGTG 57.544 50.000 36.37 29.08 42.27 3.66
1801 2373 2.567169 TGATTCAATCCCAGTCGACTGT 59.433 45.455 36.37 20.79 42.27 3.55
1802 2374 3.251479 TGATTCAATCCCAGTCGACTG 57.749 47.619 33.87 33.87 43.40 3.51
1803 2375 3.981071 TTGATTCAATCCCAGTCGACT 57.019 42.857 13.58 13.58 0.00 4.18
1804 2376 4.878397 AGAATTGATTCAATCCCAGTCGAC 59.122 41.667 12.15 7.70 39.23 4.20
1805 2377 5.102953 AGAATTGATTCAATCCCAGTCGA 57.897 39.130 12.15 0.00 39.23 4.20
1806 2378 4.877823 TGAGAATTGATTCAATCCCAGTCG 59.122 41.667 12.15 0.00 39.23 4.18
1807 2379 5.884792 ACTGAGAATTGATTCAATCCCAGTC 59.115 40.000 22.17 13.65 35.22 3.51
1808 2380 5.824421 ACTGAGAATTGATTCAATCCCAGT 58.176 37.500 22.17 22.17 39.23 4.00
1809 2381 5.884232 TGACTGAGAATTGATTCAATCCCAG 59.116 40.000 21.37 21.37 39.23 4.45
1810 2382 5.818887 TGACTGAGAATTGATTCAATCCCA 58.181 37.500 12.15 9.39 39.23 4.37
1811 2383 6.376581 ACTTGACTGAGAATTGATTCAATCCC 59.623 38.462 12.15 7.74 39.23 3.85
1812 2384 7.120285 TCACTTGACTGAGAATTGATTCAATCC 59.880 37.037 12.15 0.00 39.23 3.01
1813 2385 7.961827 GTCACTTGACTGAGAATTGATTCAATC 59.038 37.037 12.15 6.55 41.65 2.67
1814 2386 7.446319 TGTCACTTGACTGAGAATTGATTCAAT 59.554 33.333 10.63 6.06 44.99 2.57
1815 2387 6.767423 TGTCACTTGACTGAGAATTGATTCAA 59.233 34.615 10.63 0.75 44.99 2.69
1816 2388 6.290605 TGTCACTTGACTGAGAATTGATTCA 58.709 36.000 10.63 0.00 44.99 2.57
1817 2389 6.791887 TGTCACTTGACTGAGAATTGATTC 57.208 37.500 10.63 0.00 44.99 2.52
1818 2390 8.099537 ACTATGTCACTTGACTGAGAATTGATT 58.900 33.333 10.63 0.00 44.99 2.57
1819 2391 7.619050 ACTATGTCACTTGACTGAGAATTGAT 58.381 34.615 10.63 0.00 44.99 2.57
1820 2392 6.997655 ACTATGTCACTTGACTGAGAATTGA 58.002 36.000 10.63 0.00 44.99 2.57
1821 2393 8.939201 ATACTATGTCACTTGACTGAGAATTG 57.061 34.615 10.63 0.09 44.99 2.32
1858 2430 9.787532 GCAAAATTTTCTTTTTAGCTTTCCTTT 57.212 25.926 0.00 0.00 0.00 3.11
1859 2431 8.955388 TGCAAAATTTTCTTTTTAGCTTTCCTT 58.045 25.926 0.00 0.00 0.00 3.36
1860 2432 8.397906 GTGCAAAATTTTCTTTTTAGCTTTCCT 58.602 29.630 0.00 0.00 0.00 3.36
1861 2433 7.373180 CGTGCAAAATTTTCTTTTTAGCTTTCC 59.627 33.333 0.00 0.00 0.00 3.13
1862 2434 7.373180 CCGTGCAAAATTTTCTTTTTAGCTTTC 59.627 33.333 0.00 0.00 0.00 2.62
1863 2435 7.148323 ACCGTGCAAAATTTTCTTTTTAGCTTT 60.148 29.630 0.00 0.00 0.00 3.51
1864 2436 6.315144 ACCGTGCAAAATTTTCTTTTTAGCTT 59.685 30.769 0.00 0.00 0.00 3.74
1865 2437 5.815222 ACCGTGCAAAATTTTCTTTTTAGCT 59.185 32.000 0.00 0.00 0.00 3.32
1866 2438 6.043327 ACCGTGCAAAATTTTCTTTTTAGC 57.957 33.333 0.00 0.41 0.00 3.09
1867 2439 7.905126 AGAACCGTGCAAAATTTTCTTTTTAG 58.095 30.769 0.00 0.00 0.00 1.85
1868 2440 7.835634 AGAACCGTGCAAAATTTTCTTTTTA 57.164 28.000 0.00 0.00 0.00 1.52
1869 2441 6.735678 AGAACCGTGCAAAATTTTCTTTTT 57.264 29.167 0.00 0.00 0.00 1.94
1870 2442 6.370166 TGAAGAACCGTGCAAAATTTTCTTTT 59.630 30.769 0.00 0.00 34.29 2.27
1871 2443 5.872070 TGAAGAACCGTGCAAAATTTTCTTT 59.128 32.000 0.00 0.00 34.29 2.52
1872 2444 5.415221 TGAAGAACCGTGCAAAATTTTCTT 58.585 33.333 0.00 8.84 36.30 2.52
1873 2445 5.004922 TGAAGAACCGTGCAAAATTTTCT 57.995 34.783 0.00 0.00 0.00 2.52
1874 2446 5.234116 ACATGAAGAACCGTGCAAAATTTTC 59.766 36.000 0.00 0.00 0.00 2.29
1875 2447 5.115480 ACATGAAGAACCGTGCAAAATTTT 58.885 33.333 0.00 0.00 0.00 1.82
1876 2448 4.692228 ACATGAAGAACCGTGCAAAATTT 58.308 34.783 0.00 0.00 0.00 1.82
1877 2449 4.320608 ACATGAAGAACCGTGCAAAATT 57.679 36.364 0.00 0.00 0.00 1.82
1878 2450 5.240623 TCTTACATGAAGAACCGTGCAAAAT 59.759 36.000 0.00 0.00 41.39 1.82
1879 2451 4.576873 TCTTACATGAAGAACCGTGCAAAA 59.423 37.500 0.00 0.00 41.39 2.44
1880 2452 4.130857 TCTTACATGAAGAACCGTGCAAA 58.869 39.130 0.00 0.00 41.39 3.68
1881 2453 3.734463 TCTTACATGAAGAACCGTGCAA 58.266 40.909 0.00 0.00 41.39 4.08
1882 2454 3.394674 TCTTACATGAAGAACCGTGCA 57.605 42.857 0.00 0.00 41.39 4.57
1903 2475 8.817100 CGTCTCAGTTAATGCTATATTTGTTGA 58.183 33.333 0.00 0.00 0.00 3.18
1904 2476 8.604035 ACGTCTCAGTTAATGCTATATTTGTTG 58.396 33.333 0.00 0.00 0.00 3.33
1905 2477 8.718102 ACGTCTCAGTTAATGCTATATTTGTT 57.282 30.769 0.00 0.00 0.00 2.83
1906 2478 9.811995 TTACGTCTCAGTTAATGCTATATTTGT 57.188 29.630 0.00 0.00 0.00 2.83
1911 2483 9.678941 CTTGATTACGTCTCAGTTAATGCTATA 57.321 33.333 0.00 0.00 0.00 1.31
1912 2484 8.198109 ACTTGATTACGTCTCAGTTAATGCTAT 58.802 33.333 0.00 0.00 0.00 2.97
1913 2485 7.544622 ACTTGATTACGTCTCAGTTAATGCTA 58.455 34.615 0.00 0.00 0.00 3.49
1914 2486 6.398918 ACTTGATTACGTCTCAGTTAATGCT 58.601 36.000 0.00 0.00 0.00 3.79
1915 2487 6.531948 AGACTTGATTACGTCTCAGTTAATGC 59.468 38.462 0.00 0.00 35.72 3.56
1925 2497 4.001652 TCGACTGAGACTTGATTACGTCT 58.998 43.478 0.00 0.00 42.79 4.18
1926 2498 4.090034 GTCGACTGAGACTTGATTACGTC 58.910 47.826 8.70 0.00 38.09 4.34
1927 2499 4.080969 GTCGACTGAGACTTGATTACGT 57.919 45.455 8.70 0.00 38.09 3.57
1941 2513 3.560902 TTGCTAAGTCTCAGTCGACTG 57.439 47.619 34.76 34.76 43.14 3.51
1942 2514 4.585955 TTTTGCTAAGTCTCAGTCGACT 57.414 40.909 13.58 13.58 45.73 4.18
1943 2515 6.807230 TCTTATTTTGCTAAGTCTCAGTCGAC 59.193 38.462 7.70 7.70 31.85 4.20
1944 2516 6.920817 TCTTATTTTGCTAAGTCTCAGTCGA 58.079 36.000 0.00 0.00 31.85 4.20
1945 2517 7.763172 ATCTTATTTTGCTAAGTCTCAGTCG 57.237 36.000 0.00 0.00 31.85 4.18
1951 2523 9.959721 TGGAGTTTATCTTATTTTGCTAAGTCT 57.040 29.630 0.00 0.00 31.85 3.24
1953 2525 8.678199 GCTGGAGTTTATCTTATTTTGCTAAGT 58.322 33.333 0.00 0.00 31.85 2.24
1954 2526 8.897752 AGCTGGAGTTTATCTTATTTTGCTAAG 58.102 33.333 0.00 0.00 0.00 2.18
1955 2527 8.807948 AGCTGGAGTTTATCTTATTTTGCTAA 57.192 30.769 0.00 0.00 0.00 3.09
1956 2528 8.807948 AAGCTGGAGTTTATCTTATTTTGCTA 57.192 30.769 0.00 0.00 0.00 3.49
1957 2529 7.709149 AAGCTGGAGTTTATCTTATTTTGCT 57.291 32.000 0.00 0.00 0.00 3.91
1958 2530 9.855021 TTAAAGCTGGAGTTTATCTTATTTTGC 57.145 29.630 0.00 0.00 0.00 3.68
1977 2549 9.463443 GTTGTGTGTATCTTTTGATTTAAAGCT 57.537 29.630 4.90 0.00 40.19 3.74
2053 3099 8.690884 CAGTAGTAGATCTGATCTTCCTTTTCA 58.309 37.037 23.98 2.14 40.76 2.69
2054 3100 8.691797 ACAGTAGTAGATCTGATCTTCCTTTTC 58.308 37.037 23.98 13.43 40.76 2.29
2076 3122 3.389983 TCACTGGTAGCCTGTTTTACAGT 59.610 43.478 6.13 0.00 44.50 3.55
2079 3125 3.735591 TGTCACTGGTAGCCTGTTTTAC 58.264 45.455 0.00 0.00 33.44 2.01
2080 3126 3.244422 CCTGTCACTGGTAGCCTGTTTTA 60.244 47.826 0.00 0.00 33.44 1.52
2084 3130 0.471971 ACCTGTCACTGGTAGCCTGT 60.472 55.000 4.15 0.00 33.97 4.00
2087 3133 1.376037 GCACCTGTCACTGGTAGCC 60.376 63.158 5.96 0.00 33.97 3.93
2088 3134 0.250295 TTGCACCTGTCACTGGTAGC 60.250 55.000 5.96 12.54 33.97 3.58
2089 3135 2.254546 TTTGCACCTGTCACTGGTAG 57.745 50.000 5.96 2.82 33.97 3.18
2130 3327 6.861572 CCTGCAGTTCGAAACTATATTATCGA 59.138 38.462 13.81 0.00 40.46 3.59
2131 3328 6.400091 GCCTGCAGTTCGAAACTATATTATCG 60.400 42.308 13.81 0.00 40.46 2.92
2138 3335 1.359848 CGCCTGCAGTTCGAAACTAT 58.640 50.000 17.43 0.00 40.46 2.12
2161 3519 1.339151 CCAGGGTCTTTCACTAGTGGC 60.339 57.143 22.48 8.10 0.00 5.01
2213 4327 5.117440 GGGCAACGTTATTTTCTTTTAACCG 59.883 40.000 0.00 0.00 37.60 4.44
2254 4368 6.827586 ATACCCACTATTTTTCGCAAAGAA 57.172 33.333 0.00 0.00 37.01 2.52
2255 4369 6.827586 AATACCCACTATTTTTCGCAAAGA 57.172 33.333 0.00 0.00 0.00 2.52
2257 4371 9.575783 GAATAAATACCCACTATTTTTCGCAAA 57.424 29.630 0.00 0.00 36.58 3.68
2258 4372 8.192110 GGAATAAATACCCACTATTTTTCGCAA 58.808 33.333 0.00 0.00 36.58 4.85
2259 4373 7.558444 AGGAATAAATACCCACTATTTTTCGCA 59.442 33.333 0.00 0.00 36.58 5.10
2260 4374 7.937649 AGGAATAAATACCCACTATTTTTCGC 58.062 34.615 0.00 0.00 36.58 4.70
2261 4375 9.338622 AGAGGAATAAATACCCACTATTTTTCG 57.661 33.333 0.00 0.00 36.58 3.46
2296 4410 9.297037 AGTGCAAACTTTTGTATTAGGAGTAAT 57.703 29.630 3.74 0.00 40.24 1.89
2297 4411 8.564574 CAGTGCAAACTTTTGTATTAGGAGTAA 58.435 33.333 3.74 0.00 40.24 2.24
2298 4412 7.717875 ACAGTGCAAACTTTTGTATTAGGAGTA 59.282 33.333 3.74 0.00 40.24 2.59
2301 4415 6.770785 AGACAGTGCAAACTTTTGTATTAGGA 59.229 34.615 3.74 0.00 40.24 2.94
2302 4416 6.857964 CAGACAGTGCAAACTTTTGTATTAGG 59.142 38.462 3.74 0.00 40.24 2.69
2303 4417 6.857964 CCAGACAGTGCAAACTTTTGTATTAG 59.142 38.462 3.74 0.00 40.24 1.73
2304 4418 6.544197 TCCAGACAGTGCAAACTTTTGTATTA 59.456 34.615 3.74 0.00 40.24 0.98
2305 4419 5.359576 TCCAGACAGTGCAAACTTTTGTATT 59.640 36.000 3.74 0.00 40.24 1.89
2308 4422 3.088532 TCCAGACAGTGCAAACTTTTGT 58.911 40.909 3.74 0.00 40.24 2.83
2309 4423 3.781079 TCCAGACAGTGCAAACTTTTG 57.219 42.857 0.00 0.00 41.03 2.44
2311 4425 3.356290 AGTTCCAGACAGTGCAAACTTT 58.644 40.909 0.00 0.00 30.44 2.66
2313 4427 2.565841 GAGTTCCAGACAGTGCAAACT 58.434 47.619 0.00 0.00 34.83 2.66
2314 4428 1.261619 CGAGTTCCAGACAGTGCAAAC 59.738 52.381 0.00 0.00 0.00 2.93
2315 4429 1.581934 CGAGTTCCAGACAGTGCAAA 58.418 50.000 0.00 0.00 0.00 3.68
2316 4430 0.249868 CCGAGTTCCAGACAGTGCAA 60.250 55.000 0.00 0.00 0.00 4.08
2317 4431 1.367471 CCGAGTTCCAGACAGTGCA 59.633 57.895 0.00 0.00 0.00 4.57
2318 4432 0.946221 CACCGAGTTCCAGACAGTGC 60.946 60.000 0.00 0.00 0.00 4.40
2320 4434 1.367840 GCACCGAGTTCCAGACAGT 59.632 57.895 0.00 0.00 0.00 3.55
2324 4438 1.070786 GGTTGCACCGAGTTCCAGA 59.929 57.895 0.00 0.00 0.00 3.86
2325 4439 0.817634 TTGGTTGCACCGAGTTCCAG 60.818 55.000 0.00 0.00 42.58 3.86
2326 4440 1.098712 GTTGGTTGCACCGAGTTCCA 61.099 55.000 0.00 0.00 42.58 3.53
2328 4442 0.736053 TTGTTGGTTGCACCGAGTTC 59.264 50.000 0.00 0.00 42.58 3.01
2329 4443 0.738389 CTTGTTGGTTGCACCGAGTT 59.262 50.000 0.00 0.00 42.58 3.01
2331 4445 1.008538 GCTTGTTGGTTGCACCGAG 60.009 57.895 0.00 0.00 42.58 4.63
2332 4446 2.829206 CGCTTGTTGGTTGCACCGA 61.829 57.895 0.00 0.00 42.58 4.69
2334 4448 2.027460 CCGCTTGTTGGTTGCACC 59.973 61.111 0.00 0.00 39.22 5.01
2335 4449 1.588667 CACCGCTTGTTGGTTGCAC 60.589 57.895 0.00 0.00 37.72 4.57
2336 4450 2.804167 CACCGCTTGTTGGTTGCA 59.196 55.556 0.00 0.00 37.72 4.08
2337 4451 1.791103 TAGCACCGCTTGTTGGTTGC 61.791 55.000 0.00 0.00 40.44 4.17
2339 4453 1.170290 GGTAGCACCGCTTGTTGGTT 61.170 55.000 0.00 0.00 40.44 3.67
2340 4454 1.599797 GGTAGCACCGCTTGTTGGT 60.600 57.895 0.00 0.00 40.44 3.67
2344 4458 1.553690 ATGGAGGTAGCACCGCTTGT 61.554 55.000 3.89 0.00 44.90 3.16
2345 4459 0.464036 TATGGAGGTAGCACCGCTTG 59.536 55.000 3.89 0.00 44.90 4.01
2346 4460 1.344763 GATATGGAGGTAGCACCGCTT 59.655 52.381 3.89 0.00 44.90 4.68
2347 4461 0.969894 GATATGGAGGTAGCACCGCT 59.030 55.000 3.89 0.00 44.90 5.52
2348 4462 0.969894 AGATATGGAGGTAGCACCGC 59.030 55.000 3.89 1.44 44.90 5.68
2349 4463 1.546476 GGAGATATGGAGGTAGCACCG 59.454 57.143 3.89 0.00 44.90 4.94
2351 4465 2.896039 AGGGAGATATGGAGGTAGCAC 58.104 52.381 0.00 0.00 0.00 4.40
2352 4466 4.974933 ATAGGGAGATATGGAGGTAGCA 57.025 45.455 0.00 0.00 0.00 3.49
2365 4479 8.550585 GCTCCTAGTCTAGTTAATATAGGGAGA 58.449 40.741 16.43 0.00 32.38 3.71
2366 4480 8.330247 TGCTCCTAGTCTAGTTAATATAGGGAG 58.670 40.741 6.15 0.00 32.38 4.30
2367 4481 8.228353 TGCTCCTAGTCTAGTTAATATAGGGA 57.772 38.462 6.15 0.00 32.38 4.20
2368 4482 8.741841 GTTGCTCCTAGTCTAGTTAATATAGGG 58.258 40.741 6.15 0.00 32.38 3.53
2374 4488 9.649316 AATAGAGTTGCTCCTAGTCTAGTTAAT 57.351 33.333 6.15 0.00 32.60 1.40
2375 4489 9.122779 GAATAGAGTTGCTCCTAGTCTAGTTAA 57.877 37.037 6.15 0.00 32.60 2.01
2376 4490 8.272889 TGAATAGAGTTGCTCCTAGTCTAGTTA 58.727 37.037 6.15 0.00 32.60 2.24
2377 4491 7.067737 GTGAATAGAGTTGCTCCTAGTCTAGTT 59.932 40.741 6.15 0.00 32.60 2.24
2378 4492 6.544564 GTGAATAGAGTTGCTCCTAGTCTAGT 59.455 42.308 6.15 0.00 32.60 2.57
2380 4494 6.664714 AGTGAATAGAGTTGCTCCTAGTCTA 58.335 40.000 0.00 0.00 33.38 2.59
2381 4495 5.515106 AGTGAATAGAGTTGCTCCTAGTCT 58.485 41.667 0.00 0.00 0.00 3.24
2382 4496 5.845391 AGTGAATAGAGTTGCTCCTAGTC 57.155 43.478 0.00 0.00 0.00 2.59
2384 4498 6.952773 ACTAGTGAATAGAGTTGCTCCTAG 57.047 41.667 0.00 0.00 35.30 3.02
2385 4499 7.803131 TCTACTAGTGAATAGAGTTGCTCCTA 58.197 38.462 5.39 0.00 35.30 2.94
2386 4500 6.664714 TCTACTAGTGAATAGAGTTGCTCCT 58.335 40.000 5.39 0.00 35.30 3.69
2388 4502 9.078753 GTTTTCTACTAGTGAATAGAGTTGCTC 57.921 37.037 5.39 0.00 35.30 4.26
2390 4504 8.758633 TGTTTTCTACTAGTGAATAGAGTTGC 57.241 34.615 5.39 0.00 35.30 4.17
2395 4509 8.880991 AGGTCTGTTTTCTACTAGTGAATAGA 57.119 34.615 5.39 5.72 35.30 1.98
2396 4510 9.930693 AAAGGTCTGTTTTCTACTAGTGAATAG 57.069 33.333 5.39 3.56 37.53 1.73
2398 4512 7.599245 CGAAAGGTCTGTTTTCTACTAGTGAAT 59.401 37.037 5.39 0.00 33.44 2.57
2399 4513 6.921857 CGAAAGGTCTGTTTTCTACTAGTGAA 59.078 38.462 5.39 4.72 33.44 3.18
2400 4514 6.040166 ACGAAAGGTCTGTTTTCTACTAGTGA 59.960 38.462 5.39 0.00 33.44 3.41
2401 4515 6.214399 ACGAAAGGTCTGTTTTCTACTAGTG 58.786 40.000 5.39 0.00 33.44 2.74
2402 4516 6.402456 ACGAAAGGTCTGTTTTCTACTAGT 57.598 37.500 0.00 0.00 33.44 2.57
2403 4517 5.862860 GGACGAAAGGTCTGTTTTCTACTAG 59.137 44.000 0.00 0.00 45.35 2.57
2404 4518 5.537674 AGGACGAAAGGTCTGTTTTCTACTA 59.462 40.000 0.00 0.00 45.35 1.82
2405 4519 4.344390 AGGACGAAAGGTCTGTTTTCTACT 59.656 41.667 0.00 0.00 45.35 2.57
2406 4520 4.629092 AGGACGAAAGGTCTGTTTTCTAC 58.371 43.478 0.00 0.00 45.35 2.59
2407 4521 4.262335 GGAGGACGAAAGGTCTGTTTTCTA 60.262 45.833 0.00 0.00 45.35 2.10
2408 4522 3.494573 GGAGGACGAAAGGTCTGTTTTCT 60.495 47.826 0.00 0.00 45.35 2.52
2409 4523 2.806818 GGAGGACGAAAGGTCTGTTTTC 59.193 50.000 0.00 0.00 45.35 2.29
2410 4524 2.486727 GGGAGGACGAAAGGTCTGTTTT 60.487 50.000 0.00 0.00 45.35 2.43
2411 4525 1.071857 GGGAGGACGAAAGGTCTGTTT 59.928 52.381 0.00 0.00 45.35 2.83
2412 4526 0.685660 GGGAGGACGAAAGGTCTGTT 59.314 55.000 0.00 0.00 45.35 3.16
2413 4527 1.192803 GGGGAGGACGAAAGGTCTGT 61.193 60.000 0.00 0.00 45.35 3.41
2414 4528 0.905337 AGGGGAGGACGAAAGGTCTG 60.905 60.000 0.00 0.00 45.35 3.51
2415 4529 0.178900 AAGGGGAGGACGAAAGGTCT 60.179 55.000 0.00 0.00 45.35 3.85
2416 4530 0.691332 AAAGGGGAGGACGAAAGGTC 59.309 55.000 0.00 0.00 45.31 3.85
2417 4531 1.907255 CTAAAGGGGAGGACGAAAGGT 59.093 52.381 0.00 0.00 0.00 3.50
2418 4532 1.907255 ACTAAAGGGGAGGACGAAAGG 59.093 52.381 0.00 0.00 0.00 3.11
2419 4533 2.093606 GGACTAAAGGGGAGGACGAAAG 60.094 54.545 0.00 0.00 0.00 2.62
2420 4534 1.904537 GGACTAAAGGGGAGGACGAAA 59.095 52.381 0.00 0.00 0.00 3.46
2421 4535 1.565067 GGACTAAAGGGGAGGACGAA 58.435 55.000 0.00 0.00 0.00 3.85
2422 4536 0.325016 GGGACTAAAGGGGAGGACGA 60.325 60.000 0.00 0.00 0.00 4.20
2423 4537 0.616679 TGGGACTAAAGGGGAGGACG 60.617 60.000 0.00 0.00 0.00 4.79
2424 4538 1.205055 CTGGGACTAAAGGGGAGGAC 58.795 60.000 0.00 0.00 0.00 3.85
2425 4539 0.797579 ACTGGGACTAAAGGGGAGGA 59.202 55.000 0.00 0.00 0.00 3.71
2426 4540 1.670059 AACTGGGACTAAAGGGGAGG 58.330 55.000 0.00 0.00 0.00 4.30
2427 4541 2.642807 TCAAACTGGGACTAAAGGGGAG 59.357 50.000 0.00 0.00 0.00 4.30
2428 4542 2.708759 TCAAACTGGGACTAAAGGGGA 58.291 47.619 0.00 0.00 0.00 4.81
2429 4543 3.739401 ATCAAACTGGGACTAAAGGGG 57.261 47.619 0.00 0.00 0.00 4.79
2430 4544 4.634443 CGTAATCAAACTGGGACTAAAGGG 59.366 45.833 0.00 0.00 0.00 3.95
2431 4545 4.634443 CCGTAATCAAACTGGGACTAAAGG 59.366 45.833 0.00 0.00 0.00 3.11
2432 4546 4.094442 GCCGTAATCAAACTGGGACTAAAG 59.906 45.833 0.00 0.00 0.00 1.85
2433 4547 4.004982 GCCGTAATCAAACTGGGACTAAA 58.995 43.478 0.00 0.00 0.00 1.85
2434 4548 3.602483 GCCGTAATCAAACTGGGACTAA 58.398 45.455 0.00 0.00 0.00 2.24
2435 4549 2.093341 GGCCGTAATCAAACTGGGACTA 60.093 50.000 0.00 0.00 0.00 2.59
2436 4550 1.339727 GGCCGTAATCAAACTGGGACT 60.340 52.381 0.00 0.00 0.00 3.85
2437 4551 1.092348 GGCCGTAATCAAACTGGGAC 58.908 55.000 0.00 0.00 0.00 4.46
2438 4552 0.034863 GGGCCGTAATCAAACTGGGA 60.035 55.000 0.00 0.00 0.00 4.37
2439 4553 1.373590 CGGGCCGTAATCAAACTGGG 61.374 60.000 19.97 0.00 0.00 4.45
2440 4554 0.391927 TCGGGCCGTAATCAAACTGG 60.392 55.000 27.32 0.00 0.00 4.00
2441 4555 1.444836 TTCGGGCCGTAATCAAACTG 58.555 50.000 27.32 0.00 0.00 3.16
2442 4556 1.808343 GTTTCGGGCCGTAATCAAACT 59.192 47.619 27.32 0.00 0.00 2.66
2443 4557 1.808343 AGTTTCGGGCCGTAATCAAAC 59.192 47.619 27.32 25.56 0.00 2.93
2444 4558 2.188062 AGTTTCGGGCCGTAATCAAA 57.812 45.000 27.32 15.65 0.00 2.69
2445 4559 3.331478 TTAGTTTCGGGCCGTAATCAA 57.669 42.857 27.32 16.61 0.00 2.57
2446 4560 3.199677 CATTAGTTTCGGGCCGTAATCA 58.800 45.455 27.32 11.49 0.00 2.57
2447 4561 3.001939 CACATTAGTTTCGGGCCGTAATC 59.998 47.826 27.32 16.23 0.00 1.75
2448 4562 2.940410 CACATTAGTTTCGGGCCGTAAT 59.060 45.455 27.32 18.64 0.00 1.89
2449 4563 2.028294 TCACATTAGTTTCGGGCCGTAA 60.028 45.455 27.32 20.73 0.00 3.18
2450 4564 1.549620 TCACATTAGTTTCGGGCCGTA 59.450 47.619 27.32 14.78 0.00 4.02
2451 4565 0.322322 TCACATTAGTTTCGGGCCGT 59.678 50.000 27.32 9.18 0.00 5.68
2452 4566 0.725117 GTCACATTAGTTTCGGGCCG 59.275 55.000 22.51 22.51 0.00 6.13
2453 4567 1.092348 GGTCACATTAGTTTCGGGCC 58.908 55.000 0.00 0.00 0.00 5.80
2454 4568 1.816074 TGGTCACATTAGTTTCGGGC 58.184 50.000 0.00 0.00 0.00 6.13
2467 4581 1.406477 GGAACCGGGACTAATGGTCAC 60.406 57.143 6.32 0.00 46.16 3.67
2468 4582 0.906775 GGAACCGGGACTAATGGTCA 59.093 55.000 6.32 0.00 46.16 4.02
2469 4583 0.906775 TGGAACCGGGACTAATGGTC 59.093 55.000 6.32 0.00 43.79 4.02
2470 4584 1.003928 GTTGGAACCGGGACTAATGGT 59.996 52.381 6.32 0.00 37.68 3.55
2471 4585 1.746470 GTTGGAACCGGGACTAATGG 58.254 55.000 6.32 0.00 0.00 3.16
2472 4586 1.365699 CGTTGGAACCGGGACTAATG 58.634 55.000 6.32 5.25 0.00 1.90
2473 4587 0.251073 CCGTTGGAACCGGGACTAAT 59.749 55.000 6.32 0.00 41.78 1.73
2474 4588 1.672898 CCGTTGGAACCGGGACTAA 59.327 57.895 6.32 0.00 41.78 2.24
2475 4589 2.946346 GCCGTTGGAACCGGGACTA 61.946 63.158 6.32 0.00 45.57 2.59
2476 4590 4.324991 GCCGTTGGAACCGGGACT 62.325 66.667 6.32 0.00 45.57 3.85
2477 4591 2.847435 CTAGCCGTTGGAACCGGGAC 62.847 65.000 6.32 0.00 45.57 4.46
2478 4592 2.604079 TAGCCGTTGGAACCGGGA 60.604 61.111 6.32 0.00 45.57 5.14
2479 4593 2.125269 CTAGCCGTTGGAACCGGG 60.125 66.667 6.32 0.00 45.57 5.73
2481 4595 2.452767 GTTCTAGCCGTTGGAACCG 58.547 57.895 0.67 0.00 40.35 4.44
2483 4597 2.452767 CGGTTCTAGCCGTTGGAAC 58.547 57.895 3.28 3.28 46.11 3.62


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.