Multiple sequence alignment - TraesCS5D01G468400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G468400 chr5D 100.000 2615 0 0 1 2615 509672047 509674661 0.000000e+00 4830.0
1 TraesCS5D01G468400 chr5B 94.796 1614 47 13 657 2259 640560689 640562276 0.000000e+00 2481.0
2 TraesCS5D01G468400 chr5B 95.794 214 8 1 2402 2615 640562311 640562523 6.930000e-91 344.0
3 TraesCS5D01G468400 chr5B 89.474 76 7 1 403 477 439720623 439720698 7.700000e-16 95.3
4 TraesCS5D01G468400 chr5A 95.796 1451 35 13 590 2021 637167176 637168619 0.000000e+00 2318.0
5 TraesCS5D01G468400 chr5A 93.638 613 33 3 2008 2615 637168982 637169593 0.000000e+00 911.0
6 TraesCS5D01G468400 chr5A 89.231 325 24 5 2300 2615 499657049 499657371 1.890000e-106 396.0
7 TraesCS5D01G468400 chr7A 81.034 232 40 4 139 367 93251062 93251292 5.750000e-42 182.0
8 TraesCS5D01G468400 chr3D 80.000 225 40 5 106 327 445041124 445041346 7.490000e-36 161.0
9 TraesCS5D01G468400 chr2D 78.367 245 47 4 65 304 65534911 65535154 1.250000e-33 154.0
10 TraesCS5D01G468400 chr6A 78.541 233 46 4 137 366 494477505 494477274 1.620000e-32 150.0
11 TraesCS5D01G468400 chr6D 77.444 266 49 8 106 367 472273779 472273521 5.830000e-32 148.0
12 TraesCS5D01G468400 chr2B 78.696 230 44 5 106 332 500655835 500655608 5.830000e-32 148.0
13 TraesCS5D01G468400 chr4A 78.603 229 44 5 143 367 120372975 120372748 2.100000e-31 147.0
14 TraesCS5D01G468400 chr7D 76.426 263 58 4 103 362 622606792 622607053 3.510000e-29 139.0
15 TraesCS5D01G468400 chr7D 87.302 63 6 2 395 456 596117773 596117834 1.300000e-08 71.3
16 TraesCS5D01G468400 chr1A 75.646 271 61 5 102 367 285955356 285955086 2.110000e-26 130.0
17 TraesCS5D01G468400 chr1B 81.538 130 18 6 467 593 364291596 364291722 4.600000e-18 102.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G468400 chr5D 509672047 509674661 2614 False 4830.0 4830 100.000 1 2615 1 chr5D.!!$F1 2614
1 TraesCS5D01G468400 chr5B 640560689 640562523 1834 False 1412.5 2481 95.295 657 2615 2 chr5B.!!$F2 1958
2 TraesCS5D01G468400 chr5A 637167176 637169593 2417 False 1614.5 2318 94.717 590 2615 2 chr5A.!!$F2 2025

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
227 228 0.178932 TGGACTATGGAGGCGCCTAT 60.179 55.0 32.97 23.19 37.63 2.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1879 1890 1.888512 TGCTTCATCTCTGGCCAAAAC 59.111 47.619 7.01 0.0 0.0 2.43 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 9.250624 GAGACCTATTGTGACACTGTTATATTC 57.749 37.037 7.20 0.00 0.00 1.75
27 28 8.758829 AGACCTATTGTGACACTGTTATATTCA 58.241 33.333 7.20 0.00 0.00 2.57
28 29 8.948631 ACCTATTGTGACACTGTTATATTCAG 57.051 34.615 7.20 6.19 38.68 3.02
29 30 8.758829 ACCTATTGTGACACTGTTATATTCAGA 58.241 33.333 7.20 0.00 36.81 3.27
30 31 9.599866 CCTATTGTGACACTGTTATATTCAGAA 57.400 33.333 7.20 0.38 36.81 3.02
58 59 9.624697 TTTGACATGTTATATTCAGAAACTTGC 57.375 29.630 0.00 0.00 33.77 4.01
59 60 7.463544 TGACATGTTATATTCAGAAACTTGCG 58.536 34.615 0.00 0.00 33.77 4.85
60 61 7.333174 TGACATGTTATATTCAGAAACTTGCGA 59.667 33.333 0.00 0.00 33.77 5.10
61 62 8.039603 ACATGTTATATTCAGAAACTTGCGAA 57.960 30.769 0.00 0.00 33.77 4.70
62 63 8.677300 ACATGTTATATTCAGAAACTTGCGAAT 58.323 29.630 0.00 0.00 33.77 3.34
63 64 9.507280 CATGTTATATTCAGAAACTTGCGAATT 57.493 29.630 0.00 0.00 30.94 2.17
64 65 8.894409 TGTTATATTCAGAAACTTGCGAATTG 57.106 30.769 0.00 0.00 30.94 2.32
65 66 8.726068 TGTTATATTCAGAAACTTGCGAATTGA 58.274 29.630 0.00 0.00 30.94 2.57
66 67 9.214953 GTTATATTCAGAAACTTGCGAATTGAG 57.785 33.333 0.00 0.00 30.94 3.02
67 68 3.542712 TCAGAAACTTGCGAATTGAGC 57.457 42.857 0.00 0.00 0.00 4.26
68 69 2.226437 TCAGAAACTTGCGAATTGAGCC 59.774 45.455 0.00 0.00 0.00 4.70
69 70 2.227388 CAGAAACTTGCGAATTGAGCCT 59.773 45.455 0.00 0.00 0.00 4.58
70 71 3.436704 CAGAAACTTGCGAATTGAGCCTA 59.563 43.478 0.00 0.00 0.00 3.93
71 72 4.095483 CAGAAACTTGCGAATTGAGCCTAT 59.905 41.667 0.00 0.00 0.00 2.57
72 73 4.333926 AGAAACTTGCGAATTGAGCCTATC 59.666 41.667 0.00 0.00 0.00 2.08
73 74 3.550437 ACTTGCGAATTGAGCCTATCT 57.450 42.857 0.00 0.00 0.00 1.98
74 75 3.462021 ACTTGCGAATTGAGCCTATCTC 58.538 45.455 0.00 0.00 42.23 2.75
85 86 4.809193 TGAGCCTATCTCAGATGGTTAGT 58.191 43.478 0.00 0.00 46.34 2.24
86 87 5.211973 TGAGCCTATCTCAGATGGTTAGTT 58.788 41.667 0.00 0.00 46.34 2.24
87 88 5.663106 TGAGCCTATCTCAGATGGTTAGTTT 59.337 40.000 0.00 0.00 46.34 2.66
88 89 6.168270 AGCCTATCTCAGATGGTTAGTTTC 57.832 41.667 0.00 0.00 0.00 2.78
89 90 5.902431 AGCCTATCTCAGATGGTTAGTTTCT 59.098 40.000 0.00 0.00 0.00 2.52
90 91 6.385467 AGCCTATCTCAGATGGTTAGTTTCTT 59.615 38.462 0.00 0.00 0.00 2.52
91 92 7.051000 GCCTATCTCAGATGGTTAGTTTCTTT 58.949 38.462 0.00 0.00 0.00 2.52
92 93 7.011857 GCCTATCTCAGATGGTTAGTTTCTTTG 59.988 40.741 0.00 0.00 0.00 2.77
93 94 8.043710 CCTATCTCAGATGGTTAGTTTCTTTGT 58.956 37.037 0.00 0.00 0.00 2.83
94 95 7.678947 ATCTCAGATGGTTAGTTTCTTTGTG 57.321 36.000 0.00 0.00 0.00 3.33
95 96 5.997746 TCTCAGATGGTTAGTTTCTTTGTGG 59.002 40.000 0.00 0.00 0.00 4.17
96 97 5.690865 TCAGATGGTTAGTTTCTTTGTGGT 58.309 37.500 0.00 0.00 0.00 4.16
97 98 5.530915 TCAGATGGTTAGTTTCTTTGTGGTG 59.469 40.000 0.00 0.00 0.00 4.17
98 99 4.827284 AGATGGTTAGTTTCTTTGTGGTGG 59.173 41.667 0.00 0.00 0.00 4.61
99 100 4.237976 TGGTTAGTTTCTTTGTGGTGGA 57.762 40.909 0.00 0.00 0.00 4.02
100 101 4.601084 TGGTTAGTTTCTTTGTGGTGGAA 58.399 39.130 0.00 0.00 0.00 3.53
101 102 4.399934 TGGTTAGTTTCTTTGTGGTGGAAC 59.600 41.667 0.00 0.00 0.00 3.62
112 113 4.743018 GTGGAACCATCCCACCAG 57.257 61.111 0.00 0.00 46.30 4.00
113 114 1.000896 GTGGAACCATCCCACCAGG 60.001 63.158 0.00 0.00 46.30 4.45
123 124 4.821935 CCACCAGGGTTCAAGTCC 57.178 61.111 0.00 0.00 0.00 3.85
124 125 2.155065 CCACCAGGGTTCAAGTCCT 58.845 57.895 0.00 0.00 0.00 3.85
125 126 1.358152 CCACCAGGGTTCAAGTCCTA 58.642 55.000 0.00 0.00 0.00 2.94
126 127 1.279271 CCACCAGGGTTCAAGTCCTAG 59.721 57.143 0.00 0.00 0.00 3.02
127 128 2.257207 CACCAGGGTTCAAGTCCTAGA 58.743 52.381 0.00 0.00 0.00 2.43
128 129 2.028020 CACCAGGGTTCAAGTCCTAGAC 60.028 54.545 0.00 0.00 0.00 2.59
129 130 2.158143 ACCAGGGTTCAAGTCCTAGACT 60.158 50.000 0.00 0.00 45.64 3.24
140 141 4.543590 AGTCCTAGACTTGACATTGGTG 57.456 45.455 0.00 0.00 40.28 4.17
141 142 3.904339 AGTCCTAGACTTGACATTGGTGT 59.096 43.478 0.00 0.00 40.28 4.16
142 143 4.348168 AGTCCTAGACTTGACATTGGTGTT 59.652 41.667 0.00 0.00 40.28 3.32
143 144 4.691216 GTCCTAGACTTGACATTGGTGTTC 59.309 45.833 0.00 0.00 39.09 3.18
144 145 3.679980 CCTAGACTTGACATTGGTGTTCG 59.320 47.826 0.00 0.00 39.09 3.95
145 146 1.873591 AGACTTGACATTGGTGTTCGC 59.126 47.619 0.00 0.00 39.09 4.70
146 147 1.601903 GACTTGACATTGGTGTTCGCA 59.398 47.619 0.00 0.00 39.09 5.10
147 148 2.226437 GACTTGACATTGGTGTTCGCAT 59.774 45.455 0.00 0.00 39.09 4.73
148 149 2.622942 ACTTGACATTGGTGTTCGCATT 59.377 40.909 0.00 0.00 39.09 3.56
149 150 2.987413 TGACATTGGTGTTCGCATTC 57.013 45.000 0.00 0.00 39.09 2.67
150 151 2.503331 TGACATTGGTGTTCGCATTCT 58.497 42.857 0.00 0.00 39.09 2.40
151 152 2.884012 TGACATTGGTGTTCGCATTCTT 59.116 40.909 0.00 0.00 39.09 2.52
152 153 3.058293 TGACATTGGTGTTCGCATTCTTC 60.058 43.478 0.00 0.00 39.09 2.87
153 154 3.149196 ACATTGGTGTTCGCATTCTTCT 58.851 40.909 0.00 0.00 34.01 2.85
154 155 3.058016 ACATTGGTGTTCGCATTCTTCTG 60.058 43.478 0.00 0.00 34.01 3.02
155 156 1.522668 TGGTGTTCGCATTCTTCTGG 58.477 50.000 0.00 0.00 0.00 3.86
156 157 1.071542 TGGTGTTCGCATTCTTCTGGA 59.928 47.619 0.00 0.00 0.00 3.86
157 158 2.290260 TGGTGTTCGCATTCTTCTGGAT 60.290 45.455 0.00 0.00 0.00 3.41
158 159 2.749621 GGTGTTCGCATTCTTCTGGATT 59.250 45.455 0.00 0.00 0.00 3.01
159 160 3.191371 GGTGTTCGCATTCTTCTGGATTT 59.809 43.478 0.00 0.00 0.00 2.17
160 161 4.394920 GGTGTTCGCATTCTTCTGGATTTA 59.605 41.667 0.00 0.00 0.00 1.40
161 162 5.066505 GGTGTTCGCATTCTTCTGGATTTAT 59.933 40.000 0.00 0.00 0.00 1.40
162 163 6.404734 GGTGTTCGCATTCTTCTGGATTTATT 60.405 38.462 0.00 0.00 0.00 1.40
163 164 6.688813 GTGTTCGCATTCTTCTGGATTTATTC 59.311 38.462 0.00 0.00 0.00 1.75
164 165 6.183360 TGTTCGCATTCTTCTGGATTTATTCC 60.183 38.462 0.00 0.00 45.69 3.01
177 178 5.880341 GGATTTATTCCAGACTTTCCAACG 58.120 41.667 0.00 0.00 44.74 4.10
178 179 5.646360 GGATTTATTCCAGACTTTCCAACGA 59.354 40.000 0.00 0.00 44.74 3.85
179 180 6.318900 GGATTTATTCCAGACTTTCCAACGAT 59.681 38.462 0.00 0.00 44.74 3.73
180 181 7.497909 GGATTTATTCCAGACTTTCCAACGATA 59.502 37.037 0.00 0.00 44.74 2.92
181 182 7.605410 TTTATTCCAGACTTTCCAACGATAC 57.395 36.000 0.00 0.00 0.00 2.24
182 183 4.884668 TTCCAGACTTTCCAACGATACT 57.115 40.909 0.00 0.00 0.00 2.12
183 184 4.451629 TCCAGACTTTCCAACGATACTC 57.548 45.455 0.00 0.00 0.00 2.59
184 185 3.119602 TCCAGACTTTCCAACGATACTCG 60.120 47.826 0.00 0.00 46.93 4.18
203 204 4.713824 TCGTTCAACGAGAGGATACATT 57.286 40.909 9.01 0.00 46.73 2.71
204 205 5.068234 TCGTTCAACGAGAGGATACATTT 57.932 39.130 9.01 0.00 46.73 2.32
205 206 5.100259 TCGTTCAACGAGAGGATACATTTC 58.900 41.667 9.01 0.00 46.73 2.17
206 207 4.267928 CGTTCAACGAGAGGATACATTTCC 59.732 45.833 3.01 0.00 46.05 3.13
207 208 4.041740 TCAACGAGAGGATACATTTCCG 57.958 45.455 0.00 0.00 40.94 4.30
208 209 3.446161 TCAACGAGAGGATACATTTCCGT 59.554 43.478 0.00 0.00 40.94 4.69
209 210 3.438297 ACGAGAGGATACATTTCCGTG 57.562 47.619 0.00 0.00 40.94 4.94
210 211 2.100916 ACGAGAGGATACATTTCCGTGG 59.899 50.000 0.00 0.00 40.94 4.94
211 212 2.361119 CGAGAGGATACATTTCCGTGGA 59.639 50.000 0.00 0.00 40.94 4.02
212 213 3.718815 GAGAGGATACATTTCCGTGGAC 58.281 50.000 0.00 0.00 40.94 4.02
213 214 3.375699 AGAGGATACATTTCCGTGGACT 58.624 45.455 0.00 0.00 40.94 3.85
214 215 4.543689 AGAGGATACATTTCCGTGGACTA 58.456 43.478 0.00 0.00 40.94 2.59
215 216 5.148502 AGAGGATACATTTCCGTGGACTAT 58.851 41.667 0.00 0.00 40.94 2.12
216 217 5.011125 AGAGGATACATTTCCGTGGACTATG 59.989 44.000 8.08 8.08 40.94 2.23
217 218 4.040461 AGGATACATTTCCGTGGACTATGG 59.960 45.833 12.37 0.00 40.94 2.74
218 219 4.039973 GGATACATTTCCGTGGACTATGGA 59.960 45.833 12.37 0.00 42.82 3.41
219 220 3.543680 ACATTTCCGTGGACTATGGAG 57.456 47.619 12.37 0.00 45.11 3.86
220 221 2.170607 ACATTTCCGTGGACTATGGAGG 59.829 50.000 12.37 0.00 45.11 4.30
221 222 0.539986 TTTCCGTGGACTATGGAGGC 59.460 55.000 0.00 0.00 45.11 4.70
222 223 1.672854 TTCCGTGGACTATGGAGGCG 61.673 60.000 0.00 0.00 45.11 5.52
223 224 2.279517 CGTGGACTATGGAGGCGC 60.280 66.667 0.00 0.00 0.00 6.53
224 225 2.109181 GTGGACTATGGAGGCGCC 59.891 66.667 21.89 21.89 37.10 6.53
225 226 2.041922 TGGACTATGGAGGCGCCT 60.042 61.111 33.48 33.48 37.63 5.52
226 227 1.113517 GTGGACTATGGAGGCGCCTA 61.114 60.000 32.97 16.75 37.63 3.93
227 228 0.178932 TGGACTATGGAGGCGCCTAT 60.179 55.000 32.97 23.19 37.63 2.57
228 229 0.533032 GGACTATGGAGGCGCCTATC 59.467 60.000 32.97 24.68 37.63 2.08
229 230 1.551452 GACTATGGAGGCGCCTATCT 58.449 55.000 32.97 18.88 37.63 1.98
230 231 1.203523 GACTATGGAGGCGCCTATCTG 59.796 57.143 32.97 20.37 37.63 2.90
231 232 1.203063 ACTATGGAGGCGCCTATCTGA 60.203 52.381 32.97 13.18 37.63 3.27
232 233 2.106566 CTATGGAGGCGCCTATCTGAT 58.893 52.381 32.97 18.36 37.63 2.90
233 234 1.356124 ATGGAGGCGCCTATCTGATT 58.644 50.000 32.97 4.00 37.63 2.57
234 235 1.131638 TGGAGGCGCCTATCTGATTT 58.868 50.000 32.97 3.02 37.63 2.17
235 236 1.070758 TGGAGGCGCCTATCTGATTTC 59.929 52.381 32.97 13.92 37.63 2.17
236 237 1.423395 GAGGCGCCTATCTGATTTCG 58.577 55.000 32.97 0.00 0.00 3.46
237 238 0.753262 AGGCGCCTATCTGATTTCGT 59.247 50.000 31.86 0.00 0.00 3.85
238 239 1.140816 GGCGCCTATCTGATTTCGTC 58.859 55.000 22.15 0.00 0.00 4.20
239 240 1.538204 GGCGCCTATCTGATTTCGTCA 60.538 52.381 22.15 0.00 35.05 4.35
240 241 1.523095 GCGCCTATCTGATTTCGTCAC 59.477 52.381 0.00 0.00 32.22 3.67
241 242 2.799917 GCGCCTATCTGATTTCGTCACT 60.800 50.000 0.00 0.00 32.22 3.41
242 243 3.046390 CGCCTATCTGATTTCGTCACTC 58.954 50.000 0.00 0.00 32.22 3.51
243 244 3.243234 CGCCTATCTGATTTCGTCACTCT 60.243 47.826 0.00 0.00 32.22 3.24
244 245 4.295051 GCCTATCTGATTTCGTCACTCTC 58.705 47.826 0.00 0.00 32.22 3.20
245 246 4.202060 GCCTATCTGATTTCGTCACTCTCA 60.202 45.833 0.00 0.00 32.22 3.27
246 247 5.679894 GCCTATCTGATTTCGTCACTCTCAA 60.680 44.000 0.00 0.00 32.22 3.02
247 248 5.976534 CCTATCTGATTTCGTCACTCTCAAG 59.023 44.000 0.00 0.00 32.22 3.02
248 249 5.651387 ATCTGATTTCGTCACTCTCAAGA 57.349 39.130 0.00 0.00 32.22 3.02
249 250 5.651387 TCTGATTTCGTCACTCTCAAGAT 57.349 39.130 0.00 0.00 32.22 2.40
250 251 5.405797 TCTGATTTCGTCACTCTCAAGATG 58.594 41.667 0.00 0.00 32.22 2.90
251 252 5.183904 TCTGATTTCGTCACTCTCAAGATGA 59.816 40.000 0.00 0.00 32.22 2.92
252 253 5.970592 TGATTTCGTCACTCTCAAGATGAT 58.029 37.500 0.00 0.00 30.53 2.45
253 254 5.809051 TGATTTCGTCACTCTCAAGATGATG 59.191 40.000 0.00 0.00 30.53 3.07
254 255 4.790765 TTCGTCACTCTCAAGATGATGT 57.209 40.909 0.00 0.00 32.31 3.06
255 256 4.102035 TCGTCACTCTCAAGATGATGTG 57.898 45.455 7.08 7.08 34.39 3.21
256 257 2.602211 CGTCACTCTCAAGATGATGTGC 59.398 50.000 8.04 0.00 33.68 4.57
257 258 2.935201 GTCACTCTCAAGATGATGTGCC 59.065 50.000 8.04 0.00 33.68 5.01
258 259 2.836372 TCACTCTCAAGATGATGTGCCT 59.164 45.455 8.04 0.00 33.68 4.75
259 260 4.026052 TCACTCTCAAGATGATGTGCCTA 58.974 43.478 8.04 0.00 33.68 3.93
260 261 4.118410 CACTCTCAAGATGATGTGCCTAC 58.882 47.826 0.00 0.00 29.23 3.18
261 262 4.029520 ACTCTCAAGATGATGTGCCTACT 58.970 43.478 0.00 0.00 0.00 2.57
262 263 4.099266 ACTCTCAAGATGATGTGCCTACTC 59.901 45.833 0.00 0.00 0.00 2.59
263 264 4.026052 TCTCAAGATGATGTGCCTACTCA 58.974 43.478 0.00 0.00 0.00 3.41
264 265 4.099113 TCTCAAGATGATGTGCCTACTCAG 59.901 45.833 0.00 0.00 0.00 3.35
265 266 3.771479 TCAAGATGATGTGCCTACTCAGT 59.229 43.478 0.00 0.00 0.00 3.41
266 267 4.118410 CAAGATGATGTGCCTACTCAGTC 58.882 47.826 0.00 0.00 0.00 3.51
267 268 3.641046 AGATGATGTGCCTACTCAGTCT 58.359 45.455 0.00 0.00 0.00 3.24
268 269 3.636300 AGATGATGTGCCTACTCAGTCTC 59.364 47.826 0.00 0.00 0.00 3.36
269 270 3.093057 TGATGTGCCTACTCAGTCTCT 57.907 47.619 0.00 0.00 0.00 3.10
270 271 4.236527 TGATGTGCCTACTCAGTCTCTA 57.763 45.455 0.00 0.00 0.00 2.43
271 272 3.948473 TGATGTGCCTACTCAGTCTCTAC 59.052 47.826 0.00 0.00 0.00 2.59
272 273 2.357075 TGTGCCTACTCAGTCTCTACG 58.643 52.381 0.00 0.00 0.00 3.51
273 274 2.027469 TGTGCCTACTCAGTCTCTACGA 60.027 50.000 0.00 0.00 0.00 3.43
274 275 2.610374 GTGCCTACTCAGTCTCTACGAG 59.390 54.545 0.00 0.00 34.51 4.18
275 276 2.215196 GCCTACTCAGTCTCTACGAGG 58.785 57.143 0.00 0.00 33.40 4.63
276 277 2.420408 GCCTACTCAGTCTCTACGAGGT 60.420 54.545 0.00 0.00 33.40 3.85
277 278 3.199677 CCTACTCAGTCTCTACGAGGTG 58.800 54.545 0.00 0.00 33.40 4.00
278 279 1.455248 ACTCAGTCTCTACGAGGTGC 58.545 55.000 0.00 0.00 33.40 5.01
279 280 1.003812 ACTCAGTCTCTACGAGGTGCT 59.996 52.381 0.00 0.00 33.40 4.40
280 281 1.668751 CTCAGTCTCTACGAGGTGCTC 59.331 57.143 0.00 0.00 0.00 4.26
281 282 1.003233 TCAGTCTCTACGAGGTGCTCA 59.997 52.381 0.00 0.00 0.00 4.26
282 283 2.020720 CAGTCTCTACGAGGTGCTCAT 58.979 52.381 0.00 0.00 0.00 2.90
283 284 3.118371 TCAGTCTCTACGAGGTGCTCATA 60.118 47.826 0.00 0.00 0.00 2.15
284 285 3.249799 CAGTCTCTACGAGGTGCTCATAG 59.750 52.174 0.00 0.00 28.88 2.23
285 286 2.550606 GTCTCTACGAGGTGCTCATAGG 59.449 54.545 0.00 0.00 28.77 2.57
286 287 1.883275 CTCTACGAGGTGCTCATAGGG 59.117 57.143 0.00 0.00 28.77 3.53
287 288 0.962489 CTACGAGGTGCTCATAGGGG 59.038 60.000 0.00 0.00 0.00 4.79
288 289 0.260816 TACGAGGTGCTCATAGGGGT 59.739 55.000 0.00 0.00 0.00 4.95
289 290 0.260816 ACGAGGTGCTCATAGGGGTA 59.739 55.000 0.00 0.00 0.00 3.69
290 291 0.962489 CGAGGTGCTCATAGGGGTAG 59.038 60.000 0.00 0.00 0.00 3.18
291 292 1.343069 GAGGTGCTCATAGGGGTAGG 58.657 60.000 0.00 0.00 0.00 3.18
292 293 0.941963 AGGTGCTCATAGGGGTAGGA 59.058 55.000 0.00 0.00 0.00 2.94
293 294 1.509961 AGGTGCTCATAGGGGTAGGAT 59.490 52.381 0.00 0.00 0.00 3.24
294 295 1.625818 GGTGCTCATAGGGGTAGGATG 59.374 57.143 0.00 0.00 0.00 3.51
295 296 2.330216 GTGCTCATAGGGGTAGGATGT 58.670 52.381 0.00 0.00 0.00 3.06
296 297 2.037772 GTGCTCATAGGGGTAGGATGTG 59.962 54.545 0.00 0.00 0.00 3.21
297 298 1.002544 GCTCATAGGGGTAGGATGTGC 59.997 57.143 0.00 0.00 0.00 4.57
298 299 2.329267 CTCATAGGGGTAGGATGTGCA 58.671 52.381 0.00 0.00 0.00 4.57
299 300 2.909006 CTCATAGGGGTAGGATGTGCAT 59.091 50.000 0.00 0.00 0.00 3.96
300 301 4.096681 CTCATAGGGGTAGGATGTGCATA 58.903 47.826 0.00 0.00 0.00 3.14
301 302 3.838317 TCATAGGGGTAGGATGTGCATAC 59.162 47.826 0.00 0.00 33.15 2.39
302 303 1.048601 AGGGGTAGGATGTGCATACG 58.951 55.000 0.00 0.00 34.69 3.06
303 304 0.756903 GGGGTAGGATGTGCATACGT 59.243 55.000 0.00 0.00 34.69 3.57
304 305 1.540363 GGGGTAGGATGTGCATACGTG 60.540 57.143 0.00 0.00 34.69 4.49
316 317 3.424430 GCATACGTGCGTTCATATGAG 57.576 47.619 5.39 0.00 42.28 2.90
317 318 2.794910 GCATACGTGCGTTCATATGAGT 59.205 45.455 5.39 2.09 42.28 3.41
318 319 3.362014 GCATACGTGCGTTCATATGAGTG 60.362 47.826 5.39 3.86 42.28 3.51
319 320 2.647529 ACGTGCGTTCATATGAGTGA 57.352 45.000 5.39 0.00 0.00 3.41
320 321 2.530177 ACGTGCGTTCATATGAGTGAG 58.470 47.619 5.39 0.59 0.00 3.51
321 322 2.094700 ACGTGCGTTCATATGAGTGAGT 60.095 45.455 5.39 0.84 0.00 3.41
322 323 2.279921 CGTGCGTTCATATGAGTGAGTG 59.720 50.000 5.39 0.00 0.00 3.51
323 324 3.254060 GTGCGTTCATATGAGTGAGTGT 58.746 45.455 5.39 0.00 0.00 3.55
324 325 4.421058 GTGCGTTCATATGAGTGAGTGTA 58.579 43.478 5.39 0.00 0.00 2.90
325 326 5.043903 GTGCGTTCATATGAGTGAGTGTAT 58.956 41.667 5.39 0.00 0.00 2.29
326 327 5.043248 TGCGTTCATATGAGTGAGTGTATG 58.957 41.667 5.39 0.00 0.00 2.39
327 328 5.043903 GCGTTCATATGAGTGAGTGTATGT 58.956 41.667 5.39 0.00 0.00 2.29
328 329 6.183360 TGCGTTCATATGAGTGAGTGTATGTA 60.183 38.462 5.39 0.00 0.00 2.29
329 330 6.142480 GCGTTCATATGAGTGAGTGTATGTAC 59.858 42.308 5.39 0.00 0.00 2.90
330 331 6.357240 CGTTCATATGAGTGAGTGTATGTACG 59.643 42.308 5.39 4.61 39.81 3.67
331 332 6.937436 TCATATGAGTGAGTGTATGTACGT 57.063 37.500 0.00 0.00 0.00 3.57
332 333 8.340443 GTTCATATGAGTGAGTGTATGTACGTA 58.660 37.037 5.39 0.00 0.00 3.57
333 334 8.617290 TCATATGAGTGAGTGTATGTACGTAT 57.383 34.615 0.00 0.00 0.00 3.06
334 335 8.504005 TCATATGAGTGAGTGTATGTACGTATG 58.496 37.037 0.00 0.00 0.00 2.39
335 336 6.694877 ATGAGTGAGTGTATGTACGTATGT 57.305 37.500 0.00 0.00 0.00 2.29
336 337 7.797038 ATGAGTGAGTGTATGTACGTATGTA 57.203 36.000 0.00 0.00 0.00 2.29
337 338 7.797038 TGAGTGAGTGTATGTACGTATGTAT 57.203 36.000 0.00 0.00 32.11 2.29
338 339 7.636326 TGAGTGAGTGTATGTACGTATGTATG 58.364 38.462 0.00 0.00 32.11 2.39
339 340 7.496591 TGAGTGAGTGTATGTACGTATGTATGA 59.503 37.037 0.00 0.00 32.11 2.15
340 341 8.217131 AGTGAGTGTATGTACGTATGTATGAA 57.783 34.615 0.00 0.00 32.11 2.57
341 342 8.127327 AGTGAGTGTATGTACGTATGTATGAAC 58.873 37.037 0.00 0.00 32.11 3.18
342 343 7.911727 GTGAGTGTATGTACGTATGTATGAACA 59.088 37.037 0.00 0.94 40.69 3.18
344 345 9.459640 GAGTGTATGTACGTATGTATGAACATT 57.540 33.333 0.00 4.65 44.07 2.71
345 346 9.811995 AGTGTATGTACGTATGTATGAACATTT 57.188 29.630 0.00 0.07 44.07 2.32
346 347 9.843874 GTGTATGTACGTATGTATGAACATTTG 57.156 33.333 0.00 0.00 44.07 2.32
347 348 8.544597 TGTATGTACGTATGTATGAACATTTGC 58.455 33.333 0.00 0.98 44.07 3.68
348 349 6.026873 TGTACGTATGTATGAACATTTGCG 57.973 37.500 0.00 3.13 44.07 4.85
349 350 5.577554 TGTACGTATGTATGAACATTTGCGT 59.422 36.000 0.00 14.68 44.07 5.24
350 351 5.138800 ACGTATGTATGAACATTTGCGTC 57.861 39.130 0.00 0.00 44.07 5.19
351 352 4.868171 ACGTATGTATGAACATTTGCGTCT 59.132 37.500 0.00 0.00 44.07 4.18
352 353 5.190342 CGTATGTATGAACATTTGCGTCTG 58.810 41.667 0.00 0.00 44.07 3.51
353 354 5.220397 CGTATGTATGAACATTTGCGTCTGT 60.220 40.000 0.00 0.00 44.07 3.41
354 355 6.020201 CGTATGTATGAACATTTGCGTCTGTA 60.020 38.462 0.00 0.00 44.07 2.74
355 356 5.524511 TGTATGAACATTTGCGTCTGTAC 57.475 39.130 0.00 0.00 0.00 2.90
356 357 5.234752 TGTATGAACATTTGCGTCTGTACT 58.765 37.500 0.00 0.00 0.00 2.73
357 358 6.391537 TGTATGAACATTTGCGTCTGTACTA 58.608 36.000 0.00 0.00 0.00 1.82
358 359 7.039270 TGTATGAACATTTGCGTCTGTACTAT 58.961 34.615 0.00 0.00 0.00 2.12
359 360 5.778161 TGAACATTTGCGTCTGTACTATG 57.222 39.130 0.00 0.00 0.00 2.23
360 361 5.234752 TGAACATTTGCGTCTGTACTATGT 58.765 37.500 0.00 0.00 0.00 2.29
361 362 5.699001 TGAACATTTGCGTCTGTACTATGTT 59.301 36.000 0.00 0.00 37.42 2.71
362 363 6.869388 TGAACATTTGCGTCTGTACTATGTTA 59.131 34.615 0.00 0.00 35.55 2.41
363 364 7.385478 TGAACATTTGCGTCTGTACTATGTTAA 59.615 33.333 0.00 0.00 35.55 2.01
364 365 7.661127 ACATTTGCGTCTGTACTATGTTAAA 57.339 32.000 0.00 0.00 0.00 1.52
365 366 8.090250 ACATTTGCGTCTGTACTATGTTAAAA 57.910 30.769 0.00 0.00 0.00 1.52
366 367 8.561212 ACATTTGCGTCTGTACTATGTTAAAAA 58.439 29.630 0.00 0.00 0.00 1.94
367 368 9.051027 CATTTGCGTCTGTACTATGTTAAAAAG 57.949 33.333 0.00 0.00 0.00 2.27
368 369 6.715344 TGCGTCTGTACTATGTTAAAAAGG 57.285 37.500 0.00 0.00 0.00 3.11
369 370 6.457355 TGCGTCTGTACTATGTTAAAAAGGA 58.543 36.000 0.00 0.00 0.00 3.36
370 371 6.366877 TGCGTCTGTACTATGTTAAAAAGGAC 59.633 38.462 0.00 0.00 0.00 3.85
371 372 6.183360 GCGTCTGTACTATGTTAAAAAGGACC 60.183 42.308 0.00 0.00 0.00 4.46
372 373 6.312180 CGTCTGTACTATGTTAAAAAGGACCC 59.688 42.308 0.00 0.00 0.00 4.46
373 374 6.596888 GTCTGTACTATGTTAAAAAGGACCCC 59.403 42.308 0.00 0.00 0.00 4.95
374 375 5.490159 TGTACTATGTTAAAAAGGACCCCG 58.510 41.667 0.00 0.00 0.00 5.73
375 376 4.914177 ACTATGTTAAAAAGGACCCCGA 57.086 40.909 0.00 0.00 0.00 5.14
376 377 5.446260 ACTATGTTAAAAAGGACCCCGAT 57.554 39.130 0.00 0.00 0.00 4.18
377 378 6.564557 ACTATGTTAAAAAGGACCCCGATA 57.435 37.500 0.00 0.00 0.00 2.92
378 379 6.961042 ACTATGTTAAAAAGGACCCCGATAA 58.039 36.000 0.00 0.00 0.00 1.75
379 380 6.825213 ACTATGTTAAAAAGGACCCCGATAAC 59.175 38.462 0.00 0.00 0.00 1.89
380 381 4.002316 TGTTAAAAAGGACCCCGATAACG 58.998 43.478 0.00 0.00 39.43 3.18
381 382 1.456296 AAAAAGGACCCCGATAACGC 58.544 50.000 0.00 0.00 38.29 4.84
382 383 0.393402 AAAAGGACCCCGATAACGCC 60.393 55.000 0.00 0.00 38.29 5.68
383 384 2.261430 AAAGGACCCCGATAACGCCC 62.261 60.000 0.00 0.00 38.29 6.13
384 385 3.472726 GGACCCCGATAACGCCCA 61.473 66.667 0.00 0.00 38.29 5.36
385 386 2.585698 GACCCCGATAACGCCCAA 59.414 61.111 0.00 0.00 38.29 4.12
386 387 1.078285 GACCCCGATAACGCCCAAA 60.078 57.895 0.00 0.00 38.29 3.28
387 388 1.371337 GACCCCGATAACGCCCAAAC 61.371 60.000 0.00 0.00 38.29 2.93
388 389 2.466140 CCCCGATAACGCCCAAACG 61.466 63.158 0.00 0.00 38.29 3.60
427 428 9.332301 CAATGACAAATCAAACATTTTTATGGC 57.668 29.630 0.00 0.00 38.69 4.40
428 429 8.618702 ATGACAAATCAAACATTTTTATGGCA 57.381 26.923 0.00 0.00 38.69 4.92
429 430 8.442632 TGACAAATCAAACATTTTTATGGCAA 57.557 26.923 0.00 0.00 0.00 4.52
430 431 9.064706 TGACAAATCAAACATTTTTATGGCAAT 57.935 25.926 0.00 0.00 0.00 3.56
431 432 9.896263 GACAAATCAAACATTTTTATGGCAATT 57.104 25.926 0.00 0.00 0.00 2.32
445 446 8.918961 TTTATGGCAATTTTAATAACGTGAGG 57.081 30.769 0.00 0.00 0.00 3.86
446 447 6.767524 ATGGCAATTTTAATAACGTGAGGA 57.232 33.333 0.00 0.00 0.00 3.71
447 448 6.767524 TGGCAATTTTAATAACGTGAGGAT 57.232 33.333 0.00 0.00 0.00 3.24
448 449 6.559810 TGGCAATTTTAATAACGTGAGGATG 58.440 36.000 0.00 0.00 0.00 3.51
449 450 5.458779 GGCAATTTTAATAACGTGAGGATGC 59.541 40.000 0.00 0.00 0.00 3.91
450 451 5.458779 GCAATTTTAATAACGTGAGGATGCC 59.541 40.000 0.00 0.00 0.00 4.40
451 452 6.559810 CAATTTTAATAACGTGAGGATGCCA 58.440 36.000 0.00 0.00 0.00 4.92
452 453 6.767524 ATTTTAATAACGTGAGGATGCCAA 57.232 33.333 0.00 0.00 0.00 4.52
453 454 5.811399 TTTAATAACGTGAGGATGCCAAG 57.189 39.130 0.00 0.00 0.00 3.61
454 455 3.350219 AATAACGTGAGGATGCCAAGT 57.650 42.857 0.00 0.00 0.00 3.16
455 456 2.851263 TAACGTGAGGATGCCAAGTT 57.149 45.000 10.38 10.38 39.06 2.66
456 457 1.981256 AACGTGAGGATGCCAAGTTT 58.019 45.000 0.00 0.00 33.65 2.66
457 458 2.851263 ACGTGAGGATGCCAAGTTTA 57.149 45.000 0.00 0.00 0.00 2.01
458 459 3.134574 ACGTGAGGATGCCAAGTTTAA 57.865 42.857 0.00 0.00 0.00 1.52
459 460 3.686016 ACGTGAGGATGCCAAGTTTAAT 58.314 40.909 0.00 0.00 0.00 1.40
460 461 4.079253 ACGTGAGGATGCCAAGTTTAATT 58.921 39.130 0.00 0.00 0.00 1.40
461 462 4.082787 ACGTGAGGATGCCAAGTTTAATTG 60.083 41.667 0.00 0.00 0.00 2.32
470 471 4.932268 CCAAGTTTAATTGGCAAGCATG 57.068 40.909 5.96 0.00 43.12 4.06
471 472 3.685756 CCAAGTTTAATTGGCAAGCATGG 59.314 43.478 5.96 3.61 43.12 3.66
489 490 4.751060 CATGGCAAATTCATGCTTAGTGT 58.249 39.130 0.00 0.00 45.68 3.55
490 491 5.893687 CATGGCAAATTCATGCTTAGTGTA 58.106 37.500 0.00 0.00 45.68 2.90
491 492 6.509656 CATGGCAAATTCATGCTTAGTGTAT 58.490 36.000 0.00 0.00 45.68 2.29
492 493 6.528537 TGGCAAATTCATGCTTAGTGTATT 57.471 33.333 2.32 0.00 45.68 1.89
493 494 6.934056 TGGCAAATTCATGCTTAGTGTATTT 58.066 32.000 2.32 0.00 45.68 1.40
494 495 7.385267 TGGCAAATTCATGCTTAGTGTATTTT 58.615 30.769 2.32 0.00 45.68 1.82
495 496 7.877097 TGGCAAATTCATGCTTAGTGTATTTTT 59.123 29.630 2.32 0.00 45.68 1.94
515 516 2.237393 TTGCCAGGAAATTGTTGTGC 57.763 45.000 0.00 0.00 0.00 4.57
516 517 1.117994 TGCCAGGAAATTGTTGTGCA 58.882 45.000 0.00 0.00 0.00 4.57
517 518 1.693062 TGCCAGGAAATTGTTGTGCAT 59.307 42.857 0.00 0.00 0.00 3.96
518 519 2.070783 GCCAGGAAATTGTTGTGCATG 58.929 47.619 0.00 0.00 0.00 4.06
519 520 2.548493 GCCAGGAAATTGTTGTGCATGT 60.548 45.455 0.00 0.00 0.00 3.21
520 521 3.319755 CCAGGAAATTGTTGTGCATGTC 58.680 45.455 0.00 0.00 0.00 3.06
521 522 3.006110 CCAGGAAATTGTTGTGCATGTCT 59.994 43.478 0.00 0.00 0.00 3.41
522 523 4.218200 CCAGGAAATTGTTGTGCATGTCTA 59.782 41.667 0.00 0.00 0.00 2.59
523 524 5.278907 CCAGGAAATTGTTGTGCATGTCTAA 60.279 40.000 0.00 0.00 0.00 2.10
524 525 5.630680 CAGGAAATTGTTGTGCATGTCTAAC 59.369 40.000 0.00 0.00 0.00 2.34
525 526 5.536161 AGGAAATTGTTGTGCATGTCTAACT 59.464 36.000 0.00 0.00 0.00 2.24
526 527 6.714810 AGGAAATTGTTGTGCATGTCTAACTA 59.285 34.615 0.00 0.00 0.00 2.24
527 528 7.230510 AGGAAATTGTTGTGCATGTCTAACTAA 59.769 33.333 0.00 0.00 0.00 2.24
528 529 7.865385 GGAAATTGTTGTGCATGTCTAACTAAA 59.135 33.333 0.00 0.00 0.00 1.85
529 530 8.574196 AAATTGTTGTGCATGTCTAACTAAAC 57.426 30.769 0.00 0.00 0.00 2.01
530 531 6.935741 TTGTTGTGCATGTCTAACTAAACT 57.064 33.333 0.00 0.00 0.00 2.66
531 532 6.935741 TGTTGTGCATGTCTAACTAAACTT 57.064 33.333 0.00 0.00 0.00 2.66
532 533 6.724263 TGTTGTGCATGTCTAACTAAACTTG 58.276 36.000 0.00 0.00 0.00 3.16
533 534 5.356882 TGTGCATGTCTAACTAAACTTGC 57.643 39.130 0.00 6.46 43.22 4.01
534 535 4.215399 TGTGCATGTCTAACTAAACTTGCC 59.785 41.667 9.84 4.04 42.62 4.52
535 536 4.215399 GTGCATGTCTAACTAAACTTGCCA 59.785 41.667 9.84 0.00 42.62 4.92
536 537 4.824537 TGCATGTCTAACTAAACTTGCCAA 59.175 37.500 9.84 0.00 42.62 4.52
537 538 5.154222 GCATGTCTAACTAAACTTGCCAAC 58.846 41.667 0.00 0.00 39.39 3.77
538 539 5.699839 CATGTCTAACTAAACTTGCCAACC 58.300 41.667 0.00 0.00 0.00 3.77
539 540 5.043737 TGTCTAACTAAACTTGCCAACCT 57.956 39.130 0.00 0.00 0.00 3.50
540 541 5.061179 TGTCTAACTAAACTTGCCAACCTC 58.939 41.667 0.00 0.00 0.00 3.85
541 542 4.151867 GTCTAACTAAACTTGCCAACCTCG 59.848 45.833 0.00 0.00 0.00 4.63
542 543 1.235724 ACTAAACTTGCCAACCTCGC 58.764 50.000 0.00 0.00 0.00 5.03
543 544 1.234821 CTAAACTTGCCAACCTCGCA 58.765 50.000 0.00 0.00 0.00 5.10
544 545 1.812571 CTAAACTTGCCAACCTCGCAT 59.187 47.619 0.00 0.00 35.83 4.73
545 546 0.598065 AAACTTGCCAACCTCGCATC 59.402 50.000 0.00 0.00 35.83 3.91
546 547 0.537143 AACTTGCCAACCTCGCATCA 60.537 50.000 0.00 0.00 35.83 3.07
547 548 1.237285 ACTTGCCAACCTCGCATCAC 61.237 55.000 0.00 0.00 35.83 3.06
548 549 0.957395 CTTGCCAACCTCGCATCACT 60.957 55.000 0.00 0.00 35.83 3.41
549 550 0.323302 TTGCCAACCTCGCATCACTA 59.677 50.000 0.00 0.00 35.83 2.74
550 551 0.323302 TGCCAACCTCGCATCACTAA 59.677 50.000 0.00 0.00 0.00 2.24
551 552 1.271108 TGCCAACCTCGCATCACTAAA 60.271 47.619 0.00 0.00 0.00 1.85
552 553 1.810151 GCCAACCTCGCATCACTAAAA 59.190 47.619 0.00 0.00 0.00 1.52
553 554 2.423538 GCCAACCTCGCATCACTAAAAT 59.576 45.455 0.00 0.00 0.00 1.82
554 555 3.119495 GCCAACCTCGCATCACTAAAATT 60.119 43.478 0.00 0.00 0.00 1.82
555 556 4.414852 CCAACCTCGCATCACTAAAATTG 58.585 43.478 0.00 0.00 0.00 2.32
556 557 4.082787 CCAACCTCGCATCACTAAAATTGT 60.083 41.667 0.00 0.00 0.00 2.71
557 558 4.946784 ACCTCGCATCACTAAAATTGTC 57.053 40.909 0.00 0.00 0.00 3.18
558 559 4.323417 ACCTCGCATCACTAAAATTGTCA 58.677 39.130 0.00 0.00 0.00 3.58
559 560 4.943705 ACCTCGCATCACTAAAATTGTCAT 59.056 37.500 0.00 0.00 0.00 3.06
560 561 5.415701 ACCTCGCATCACTAAAATTGTCATT 59.584 36.000 0.00 0.00 0.00 2.57
561 562 6.597672 ACCTCGCATCACTAAAATTGTCATTA 59.402 34.615 0.00 0.00 0.00 1.90
562 563 7.120579 ACCTCGCATCACTAAAATTGTCATTAA 59.879 33.333 0.00 0.00 0.00 1.40
563 564 7.967854 CCTCGCATCACTAAAATTGTCATTAAA 59.032 33.333 0.00 0.00 0.00 1.52
564 565 9.340695 CTCGCATCACTAAAATTGTCATTAAAA 57.659 29.630 0.00 0.00 0.00 1.52
565 566 9.684448 TCGCATCACTAAAATTGTCATTAAAAA 57.316 25.926 0.00 0.00 0.00 1.94
566 567 9.726034 CGCATCACTAAAATTGTCATTAAAAAC 57.274 29.630 0.00 0.00 0.00 2.43
567 568 9.726034 GCATCACTAAAATTGTCATTAAAAACG 57.274 29.630 0.00 0.00 0.00 3.60
577 578 8.986039 ATTGTCATTAAAAACGTTTGATTTGC 57.014 26.923 15.46 3.79 0.00 3.68
578 579 6.938542 TGTCATTAAAAACGTTTGATTTGCC 58.061 32.000 15.46 1.70 0.00 4.52
579 580 6.018669 TGTCATTAAAAACGTTTGATTTGCCC 60.019 34.615 15.46 5.81 0.00 5.36
580 581 6.201997 GTCATTAAAAACGTTTGATTTGCCCT 59.798 34.615 15.46 0.00 0.00 5.19
581 582 5.975410 TTAAAAACGTTTGATTTGCCCTG 57.025 34.783 15.46 0.00 0.00 4.45
582 583 3.810310 AAAACGTTTGATTTGCCCTGA 57.190 38.095 15.46 0.00 0.00 3.86
583 584 4.335400 AAAACGTTTGATTTGCCCTGAT 57.665 36.364 15.46 0.00 0.00 2.90
584 585 3.575965 AACGTTTGATTTGCCCTGATC 57.424 42.857 0.00 0.00 0.00 2.92
585 586 2.513753 ACGTTTGATTTGCCCTGATCA 58.486 42.857 0.00 0.00 0.00 2.92
586 587 2.890311 ACGTTTGATTTGCCCTGATCAA 59.110 40.909 0.00 0.00 39.71 2.57
587 588 3.320541 ACGTTTGATTTGCCCTGATCAAA 59.679 39.130 7.25 7.25 45.15 2.69
594 595 0.813610 TGCCCTGATCAAATACCGCG 60.814 55.000 0.00 0.00 0.00 6.46
599 600 0.250793 TGATCAAATACCGCGGGTGT 59.749 50.000 31.76 11.61 36.19 4.16
637 638 1.015607 GTCGCCCCGTGAACGTAAAT 61.016 55.000 1.75 0.00 37.74 1.40
841 845 1.821088 ATCACCTTATCCACTCCCCC 58.179 55.000 0.00 0.00 0.00 5.40
973 978 0.388659 CATCTCCTCTCTCGCCAAGG 59.611 60.000 0.00 0.00 0.00 3.61
1868 1876 1.254827 TGTTTGTTACACGCGTACACG 59.745 47.619 13.44 0.97 43.27 4.49
1933 1946 6.515272 AAACCATTCAACCTAGCACATAAG 57.485 37.500 0.00 0.00 0.00 1.73
2274 2673 6.774656 AGGATCCAAGCAGAAATACATTTAGG 59.225 38.462 15.82 0.00 0.00 2.69
2284 2683 8.286097 GCAGAAATACATTTAGGATTCTAGCAC 58.714 37.037 0.00 0.00 0.00 4.40
2322 2721 5.508200 TGGTTGAATGTGGTTTGTTCTAC 57.492 39.130 0.00 0.00 0.00 2.59
2327 2726 2.719531 TGTGGTTTGTTCTACTGGCA 57.280 45.000 0.00 0.00 0.00 4.92
2332 2731 2.956333 GGTTTGTTCTACTGGCAGGTTT 59.044 45.455 20.34 0.00 0.00 3.27
2359 2758 8.474025 TCTGAAAACCAAAAAGAAAAGCTCATA 58.526 29.630 0.00 0.00 0.00 2.15
2366 2765 7.386025 ACCAAAAAGAAAAGCTCATAGAAATGC 59.614 33.333 0.00 0.00 32.76 3.56
2387 2786 0.238289 GAGGCAAACACACCATCACG 59.762 55.000 0.00 0.00 0.00 4.35
2397 2796 1.140052 ACACCATCACGACCAACTGAA 59.860 47.619 0.00 0.00 0.00 3.02
2441 2841 7.785033 TCAGAATTGACTAAGCATCTGATGTA 58.215 34.615 18.19 4.00 38.59 2.29
2589 2989 0.730265 CCTCTCTCGAGACCTTGTCG 59.270 60.000 12.08 0.00 39.74 4.35
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 9.250624 GAATATAACAGTGTCACAATAGGTCTC 57.749 37.037 5.62 0.00 0.00 3.36
1 2 8.758829 TGAATATAACAGTGTCACAATAGGTCT 58.241 33.333 5.62 0.00 0.00 3.85
2 3 8.942338 TGAATATAACAGTGTCACAATAGGTC 57.058 34.615 5.62 1.61 0.00 3.85
3 4 8.758829 TCTGAATATAACAGTGTCACAATAGGT 58.241 33.333 5.62 0.00 36.81 3.08
4 5 9.599866 TTCTGAATATAACAGTGTCACAATAGG 57.400 33.333 5.62 0.00 36.81 2.57
32 33 9.624697 GCAAGTTTCTGAATATAACATGTCAAA 57.375 29.630 0.00 0.00 0.00 2.69
33 34 7.962373 CGCAAGTTTCTGAATATAACATGTCAA 59.038 33.333 0.00 0.00 0.00 3.18
34 35 7.333174 TCGCAAGTTTCTGAATATAACATGTCA 59.667 33.333 0.00 0.00 39.48 3.58
35 36 7.684670 TCGCAAGTTTCTGAATATAACATGTC 58.315 34.615 0.00 0.00 39.48 3.06
36 37 7.609760 TCGCAAGTTTCTGAATATAACATGT 57.390 32.000 0.00 0.00 39.48 3.21
37 38 9.507280 AATTCGCAAGTTTCTGAATATAACATG 57.493 29.630 0.00 0.00 39.48 3.21
38 39 9.507280 CAATTCGCAAGTTTCTGAATATAACAT 57.493 29.630 0.00 0.00 39.48 2.71
39 40 8.726068 TCAATTCGCAAGTTTCTGAATATAACA 58.274 29.630 0.00 0.00 39.48 2.41
40 41 9.214953 CTCAATTCGCAAGTTTCTGAATATAAC 57.785 33.333 0.00 0.00 39.48 1.89
41 42 7.910162 GCTCAATTCGCAAGTTTCTGAATATAA 59.090 33.333 0.00 0.00 39.48 0.98
42 43 7.409697 GCTCAATTCGCAAGTTTCTGAATATA 58.590 34.615 0.00 0.00 39.48 0.86
43 44 6.261118 GCTCAATTCGCAAGTTTCTGAATAT 58.739 36.000 0.00 0.00 39.48 1.28
44 45 5.391950 GGCTCAATTCGCAAGTTTCTGAATA 60.392 40.000 0.00 0.00 39.48 1.75
45 46 4.479619 GCTCAATTCGCAAGTTTCTGAAT 58.520 39.130 0.00 0.00 39.48 2.57
46 47 3.304659 GGCTCAATTCGCAAGTTTCTGAA 60.305 43.478 0.00 0.00 39.48 3.02
47 48 2.226437 GGCTCAATTCGCAAGTTTCTGA 59.774 45.455 0.00 0.00 39.48 3.27
48 49 2.227388 AGGCTCAATTCGCAAGTTTCTG 59.773 45.455 0.00 0.00 39.48 3.02
49 50 2.508526 AGGCTCAATTCGCAAGTTTCT 58.491 42.857 0.00 0.00 39.48 2.52
50 51 2.997485 AGGCTCAATTCGCAAGTTTC 57.003 45.000 0.00 0.00 39.48 2.78
51 52 4.265073 AGATAGGCTCAATTCGCAAGTTT 58.735 39.130 0.00 0.00 39.48 2.66
52 53 3.873952 GAGATAGGCTCAATTCGCAAGTT 59.126 43.478 0.00 0.00 43.38 2.66
53 54 3.462021 GAGATAGGCTCAATTCGCAAGT 58.538 45.455 0.00 0.00 43.38 3.16
64 65 5.799827 AACTAACCATCTGAGATAGGCTC 57.200 43.478 9.78 0.00 44.21 4.70
65 66 5.902431 AGAAACTAACCATCTGAGATAGGCT 59.098 40.000 9.78 0.00 0.00 4.58
66 67 6.168270 AGAAACTAACCATCTGAGATAGGC 57.832 41.667 9.78 0.00 0.00 3.93
67 68 8.043710 ACAAAGAAACTAACCATCTGAGATAGG 58.956 37.037 0.00 2.07 0.00 2.57
68 69 8.877779 CACAAAGAAACTAACCATCTGAGATAG 58.122 37.037 0.00 0.00 0.00 2.08
69 70 7.824289 CCACAAAGAAACTAACCATCTGAGATA 59.176 37.037 0.00 0.00 0.00 1.98
70 71 6.656693 CCACAAAGAAACTAACCATCTGAGAT 59.343 38.462 0.00 0.00 0.00 2.75
71 72 5.997746 CCACAAAGAAACTAACCATCTGAGA 59.002 40.000 0.00 0.00 0.00 3.27
72 73 5.765182 ACCACAAAGAAACTAACCATCTGAG 59.235 40.000 0.00 0.00 0.00 3.35
73 74 5.530915 CACCACAAAGAAACTAACCATCTGA 59.469 40.000 0.00 0.00 0.00 3.27
74 75 5.278463 CCACCACAAAGAAACTAACCATCTG 60.278 44.000 0.00 0.00 0.00 2.90
75 76 4.827284 CCACCACAAAGAAACTAACCATCT 59.173 41.667 0.00 0.00 0.00 2.90
76 77 4.825085 TCCACCACAAAGAAACTAACCATC 59.175 41.667 0.00 0.00 0.00 3.51
77 78 4.798882 TCCACCACAAAGAAACTAACCAT 58.201 39.130 0.00 0.00 0.00 3.55
78 79 4.237976 TCCACCACAAAGAAACTAACCA 57.762 40.909 0.00 0.00 0.00 3.67
79 80 4.202080 GGTTCCACCACAAAGAAACTAACC 60.202 45.833 0.00 0.00 38.42 2.85
80 81 4.399934 TGGTTCCACCACAAAGAAACTAAC 59.600 41.667 0.00 0.00 44.79 2.34
81 82 4.601084 TGGTTCCACCACAAAGAAACTAA 58.399 39.130 0.00 0.00 44.79 2.24
82 83 4.237976 TGGTTCCACCACAAAGAAACTA 57.762 40.909 0.00 0.00 44.79 2.24
83 84 3.094484 TGGTTCCACCACAAAGAAACT 57.906 42.857 0.00 0.00 44.79 2.66
96 97 3.506808 CCTGGTGGGATGGTTCCA 58.493 61.111 0.00 0.00 44.60 3.53
106 107 1.279271 CTAGGACTTGAACCCTGGTGG 59.721 57.143 0.00 0.00 41.37 4.61
107 108 2.028020 GTCTAGGACTTGAACCCTGGTG 60.028 54.545 0.00 0.00 33.38 4.17
108 109 2.158143 AGTCTAGGACTTGAACCCTGGT 60.158 50.000 0.00 0.00 40.28 4.00
109 110 2.541466 AGTCTAGGACTTGAACCCTGG 58.459 52.381 0.00 0.00 40.28 4.45
118 119 5.163195 AACACCAATGTCAAGTCTAGGACTT 60.163 40.000 7.06 7.06 45.23 3.01
119 120 3.904339 ACACCAATGTCAAGTCTAGGACT 59.096 43.478 6.25 0.00 38.58 3.85
120 121 4.273148 ACACCAATGTCAAGTCTAGGAC 57.727 45.455 0.00 0.00 31.55 3.85
121 122 4.560716 CGAACACCAATGTCAAGTCTAGGA 60.561 45.833 0.00 0.00 38.45 2.94
122 123 3.679980 CGAACACCAATGTCAAGTCTAGG 59.320 47.826 0.00 0.00 38.45 3.02
123 124 3.123621 GCGAACACCAATGTCAAGTCTAG 59.876 47.826 0.00 0.00 38.45 2.43
124 125 3.064207 GCGAACACCAATGTCAAGTCTA 58.936 45.455 0.00 0.00 38.45 2.59
125 126 1.873591 GCGAACACCAATGTCAAGTCT 59.126 47.619 0.00 0.00 38.45 3.24
126 127 1.601903 TGCGAACACCAATGTCAAGTC 59.398 47.619 0.00 0.00 38.45 3.01
127 128 1.674359 TGCGAACACCAATGTCAAGT 58.326 45.000 0.00 0.00 38.45 3.16
128 129 2.995466 ATGCGAACACCAATGTCAAG 57.005 45.000 0.00 0.00 38.45 3.02
129 130 2.884012 AGAATGCGAACACCAATGTCAA 59.116 40.909 0.00 0.00 38.45 3.18
130 131 2.503331 AGAATGCGAACACCAATGTCA 58.497 42.857 0.00 0.00 38.45 3.58
131 132 3.189287 AGAAGAATGCGAACACCAATGTC 59.811 43.478 0.00 0.00 38.45 3.06
132 133 3.058016 CAGAAGAATGCGAACACCAATGT 60.058 43.478 0.00 0.00 42.46 2.71
133 134 3.495193 CAGAAGAATGCGAACACCAATG 58.505 45.455 0.00 0.00 0.00 2.82
134 135 2.489329 CCAGAAGAATGCGAACACCAAT 59.511 45.455 0.00 0.00 0.00 3.16
135 136 1.879380 CCAGAAGAATGCGAACACCAA 59.121 47.619 0.00 0.00 0.00 3.67
136 137 1.071542 TCCAGAAGAATGCGAACACCA 59.928 47.619 0.00 0.00 0.00 4.17
137 138 1.808411 TCCAGAAGAATGCGAACACC 58.192 50.000 0.00 0.00 0.00 4.16
138 139 4.425577 AAATCCAGAAGAATGCGAACAC 57.574 40.909 0.00 0.00 0.00 3.32
139 140 6.757897 AATAAATCCAGAAGAATGCGAACA 57.242 33.333 0.00 0.00 0.00 3.18
155 156 6.737254 TCGTTGGAAAGTCTGGAATAAATC 57.263 37.500 0.00 0.00 0.00 2.17
156 157 8.047310 AGTATCGTTGGAAAGTCTGGAATAAAT 58.953 33.333 0.00 0.00 0.00 1.40
157 158 7.391620 AGTATCGTTGGAAAGTCTGGAATAAA 58.608 34.615 0.00 0.00 0.00 1.40
158 159 6.942976 AGTATCGTTGGAAAGTCTGGAATAA 58.057 36.000 0.00 0.00 0.00 1.40
159 160 6.540438 AGTATCGTTGGAAAGTCTGGAATA 57.460 37.500 0.00 0.00 0.00 1.75
160 161 5.420409 GAGTATCGTTGGAAAGTCTGGAAT 58.580 41.667 0.00 0.00 0.00 3.01
161 162 4.817517 GAGTATCGTTGGAAAGTCTGGAA 58.182 43.478 0.00 0.00 0.00 3.53
162 163 4.451629 GAGTATCGTTGGAAAGTCTGGA 57.548 45.455 0.00 0.00 0.00 3.86
182 183 5.906097 GGAAATGTATCCTCTCGTTGAACGA 60.906 44.000 19.97 19.97 41.35 3.85
183 184 4.267928 GGAAATGTATCCTCTCGTTGAACG 59.732 45.833 12.12 12.12 38.55 3.95
184 185 4.267928 CGGAAATGTATCCTCTCGTTGAAC 59.732 45.833 0.00 0.00 37.34 3.18
185 186 4.081862 ACGGAAATGTATCCTCTCGTTGAA 60.082 41.667 0.00 0.00 37.34 2.69
186 187 3.446161 ACGGAAATGTATCCTCTCGTTGA 59.554 43.478 0.00 0.00 37.34 3.18
187 188 3.551890 CACGGAAATGTATCCTCTCGTTG 59.448 47.826 0.00 0.00 37.34 4.10
188 189 3.430374 CCACGGAAATGTATCCTCTCGTT 60.430 47.826 0.00 0.00 37.34 3.85
189 190 2.100916 CCACGGAAATGTATCCTCTCGT 59.899 50.000 0.00 0.00 37.34 4.18
190 191 2.361119 TCCACGGAAATGTATCCTCTCG 59.639 50.000 0.00 0.00 37.34 4.04
191 192 3.385111 AGTCCACGGAAATGTATCCTCTC 59.615 47.826 0.00 0.00 37.34 3.20
192 193 3.375699 AGTCCACGGAAATGTATCCTCT 58.624 45.455 0.00 0.00 37.34 3.69
193 194 3.821421 AGTCCACGGAAATGTATCCTC 57.179 47.619 0.00 0.00 37.34 3.71
194 195 4.040461 CCATAGTCCACGGAAATGTATCCT 59.960 45.833 8.22 0.00 37.34 3.24
195 196 4.039973 TCCATAGTCCACGGAAATGTATCC 59.960 45.833 8.22 0.00 36.05 2.59
196 197 5.209818 TCCATAGTCCACGGAAATGTATC 57.790 43.478 8.22 0.00 0.00 2.24
197 198 4.040461 CCTCCATAGTCCACGGAAATGTAT 59.960 45.833 8.22 0.00 0.00 2.29
198 199 3.386726 CCTCCATAGTCCACGGAAATGTA 59.613 47.826 8.22 0.00 0.00 2.29
199 200 2.170607 CCTCCATAGTCCACGGAAATGT 59.829 50.000 8.22 0.00 0.00 2.71
200 201 2.838736 CCTCCATAGTCCACGGAAATG 58.161 52.381 0.00 0.00 0.00 2.32
201 202 1.141053 GCCTCCATAGTCCACGGAAAT 59.859 52.381 0.00 0.00 0.00 2.17
202 203 0.539986 GCCTCCATAGTCCACGGAAA 59.460 55.000 0.00 0.00 0.00 3.13
203 204 1.672854 CGCCTCCATAGTCCACGGAA 61.673 60.000 0.00 0.00 0.00 4.30
204 205 2.125326 CGCCTCCATAGTCCACGGA 61.125 63.158 0.00 0.00 0.00 4.69
205 206 2.417516 CGCCTCCATAGTCCACGG 59.582 66.667 0.00 0.00 0.00 4.94
206 207 2.279517 GCGCCTCCATAGTCCACG 60.280 66.667 0.00 0.00 0.00 4.94
207 208 1.113517 TAGGCGCCTCCATAGTCCAC 61.114 60.000 36.73 0.00 37.29 4.02
208 209 0.178932 ATAGGCGCCTCCATAGTCCA 60.179 55.000 36.73 13.13 37.29 4.02
209 210 0.533032 GATAGGCGCCTCCATAGTCC 59.467 60.000 36.73 6.02 37.29 3.85
210 211 1.203523 CAGATAGGCGCCTCCATAGTC 59.796 57.143 36.73 20.86 37.29 2.59
211 212 1.203063 TCAGATAGGCGCCTCCATAGT 60.203 52.381 36.73 10.36 37.29 2.12
212 213 1.550327 TCAGATAGGCGCCTCCATAG 58.450 55.000 36.73 20.18 37.29 2.23
213 214 2.238084 ATCAGATAGGCGCCTCCATA 57.762 50.000 36.73 17.27 37.29 2.74
214 215 1.356124 AATCAGATAGGCGCCTCCAT 58.644 50.000 36.73 23.35 37.29 3.41
215 216 1.070758 GAAATCAGATAGGCGCCTCCA 59.929 52.381 36.73 18.67 37.29 3.86
216 217 1.802069 GAAATCAGATAGGCGCCTCC 58.198 55.000 36.73 25.75 0.00 4.30
217 218 1.269831 ACGAAATCAGATAGGCGCCTC 60.270 52.381 36.73 21.08 0.00 4.70
218 219 0.753262 ACGAAATCAGATAGGCGCCT 59.247 50.000 34.85 34.85 0.00 5.52
219 220 1.140816 GACGAAATCAGATAGGCGCC 58.859 55.000 21.89 21.89 0.00 6.53
220 221 1.523095 GTGACGAAATCAGATAGGCGC 59.477 52.381 0.00 0.00 38.28 6.53
221 222 3.046390 GAGTGACGAAATCAGATAGGCG 58.954 50.000 0.00 0.00 38.28 5.52
222 223 4.202060 TGAGAGTGACGAAATCAGATAGGC 60.202 45.833 0.00 0.00 38.28 3.93
223 224 5.506686 TGAGAGTGACGAAATCAGATAGG 57.493 43.478 0.00 0.00 38.28 2.57
224 225 6.790282 TCTTGAGAGTGACGAAATCAGATAG 58.210 40.000 0.00 0.00 38.28 2.08
225 226 6.759497 TCTTGAGAGTGACGAAATCAGATA 57.241 37.500 0.00 0.00 38.28 1.98
226 227 5.651387 TCTTGAGAGTGACGAAATCAGAT 57.349 39.130 0.00 0.00 38.28 2.90
227 228 5.183904 TCATCTTGAGAGTGACGAAATCAGA 59.816 40.000 0.00 0.00 38.28 3.27
228 229 5.405797 TCATCTTGAGAGTGACGAAATCAG 58.594 41.667 0.00 0.00 38.28 2.90
229 230 5.391312 TCATCTTGAGAGTGACGAAATCA 57.609 39.130 0.00 0.00 33.79 2.57
230 231 5.809562 ACATCATCTTGAGAGTGACGAAATC 59.190 40.000 0.00 0.00 0.00 2.17
231 232 5.579904 CACATCATCTTGAGAGTGACGAAAT 59.420 40.000 0.00 0.00 38.08 2.17
232 233 4.925646 CACATCATCTTGAGAGTGACGAAA 59.074 41.667 0.00 0.00 38.08 3.46
233 234 4.488879 CACATCATCTTGAGAGTGACGAA 58.511 43.478 0.00 0.00 38.08 3.85
234 235 3.674410 GCACATCATCTTGAGAGTGACGA 60.674 47.826 13.70 0.00 38.08 4.20
235 236 2.602211 GCACATCATCTTGAGAGTGACG 59.398 50.000 13.70 0.00 38.08 4.35
236 237 2.935201 GGCACATCATCTTGAGAGTGAC 59.065 50.000 13.70 9.06 38.08 3.67
237 238 2.836372 AGGCACATCATCTTGAGAGTGA 59.164 45.455 13.70 1.95 38.08 3.41
238 239 3.263489 AGGCACATCATCTTGAGAGTG 57.737 47.619 7.93 7.93 38.54 3.51
239 240 4.029520 AGTAGGCACATCATCTTGAGAGT 58.970 43.478 0.00 0.00 0.00 3.24
240 241 4.099113 TGAGTAGGCACATCATCTTGAGAG 59.901 45.833 0.00 0.00 0.00 3.20
241 242 4.026052 TGAGTAGGCACATCATCTTGAGA 58.974 43.478 0.00 0.00 0.00 3.27
242 243 4.141981 ACTGAGTAGGCACATCATCTTGAG 60.142 45.833 0.00 0.00 0.00 3.02
243 244 3.771479 ACTGAGTAGGCACATCATCTTGA 59.229 43.478 0.00 0.00 0.00 3.02
244 245 4.118410 GACTGAGTAGGCACATCATCTTG 58.882 47.826 0.00 0.00 0.00 3.02
245 246 4.029520 AGACTGAGTAGGCACATCATCTT 58.970 43.478 0.00 0.00 32.87 2.40
246 247 3.636300 GAGACTGAGTAGGCACATCATCT 59.364 47.826 0.00 0.00 32.87 2.90
247 248 3.636300 AGAGACTGAGTAGGCACATCATC 59.364 47.826 0.00 0.00 32.87 2.92
248 249 3.641046 AGAGACTGAGTAGGCACATCAT 58.359 45.455 0.00 0.00 32.87 2.45
249 250 3.093057 AGAGACTGAGTAGGCACATCA 57.907 47.619 0.00 0.00 32.87 3.07
250 251 3.002862 CGTAGAGACTGAGTAGGCACATC 59.997 52.174 0.00 0.00 32.87 3.06
251 252 2.946329 CGTAGAGACTGAGTAGGCACAT 59.054 50.000 0.00 0.00 32.87 3.21
252 253 2.027469 TCGTAGAGACTGAGTAGGCACA 60.027 50.000 0.00 0.00 32.87 4.57
253 254 2.630158 TCGTAGAGACTGAGTAGGCAC 58.370 52.381 0.00 0.00 32.87 5.01
267 268 1.478837 CCCCTATGAGCACCTCGTAGA 60.479 57.143 18.42 0.00 46.99 2.59
268 269 0.962489 CCCCTATGAGCACCTCGTAG 59.038 60.000 12.42 12.42 44.93 3.51
269 270 0.260816 ACCCCTATGAGCACCTCGTA 59.739 55.000 0.00 0.00 32.35 3.43
270 271 0.260816 TACCCCTATGAGCACCTCGT 59.739 55.000 0.00 0.00 32.35 4.18
271 272 0.962489 CTACCCCTATGAGCACCTCG 59.038 60.000 0.00 0.00 32.35 4.63
272 273 1.133136 TCCTACCCCTATGAGCACCTC 60.133 57.143 0.00 0.00 0.00 3.85
273 274 0.941963 TCCTACCCCTATGAGCACCT 59.058 55.000 0.00 0.00 0.00 4.00
274 275 1.625818 CATCCTACCCCTATGAGCACC 59.374 57.143 0.00 0.00 0.00 5.01
275 276 2.037772 CACATCCTACCCCTATGAGCAC 59.962 54.545 0.00 0.00 0.00 4.40
276 277 2.329267 CACATCCTACCCCTATGAGCA 58.671 52.381 0.00 0.00 0.00 4.26
277 278 1.002544 GCACATCCTACCCCTATGAGC 59.997 57.143 0.00 0.00 31.75 4.26
278 279 2.329267 TGCACATCCTACCCCTATGAG 58.671 52.381 0.00 0.00 0.00 2.90
279 280 2.487746 TGCACATCCTACCCCTATGA 57.512 50.000 0.00 0.00 0.00 2.15
280 281 3.368427 CGTATGCACATCCTACCCCTATG 60.368 52.174 0.00 0.00 0.00 2.23
281 282 2.832129 CGTATGCACATCCTACCCCTAT 59.168 50.000 0.00 0.00 0.00 2.57
282 283 2.244695 CGTATGCACATCCTACCCCTA 58.755 52.381 0.00 0.00 0.00 3.53
283 284 1.048601 CGTATGCACATCCTACCCCT 58.951 55.000 0.00 0.00 0.00 4.79
284 285 0.756903 ACGTATGCACATCCTACCCC 59.243 55.000 0.00 0.00 0.00 4.95
285 286 1.865865 CACGTATGCACATCCTACCC 58.134 55.000 0.00 0.00 0.00 3.69
297 298 4.041723 TCACTCATATGAACGCACGTATG 58.958 43.478 6.90 12.50 39.62 2.39
298 299 4.202020 ACTCACTCATATGAACGCACGTAT 60.202 41.667 6.90 0.00 0.00 3.06
299 300 3.128068 ACTCACTCATATGAACGCACGTA 59.872 43.478 6.90 0.00 0.00 3.57
300 301 2.094700 ACTCACTCATATGAACGCACGT 60.095 45.455 6.90 0.00 0.00 4.49
301 302 2.279921 CACTCACTCATATGAACGCACG 59.720 50.000 6.90 0.00 0.00 5.34
302 303 3.254060 ACACTCACTCATATGAACGCAC 58.746 45.455 6.90 0.00 0.00 5.34
303 304 3.592898 ACACTCACTCATATGAACGCA 57.407 42.857 6.90 0.00 0.00 5.24
304 305 5.043903 ACATACACTCACTCATATGAACGC 58.956 41.667 6.90 0.00 0.00 4.84
305 306 6.357240 CGTACATACACTCACTCATATGAACG 59.643 42.308 6.90 5.23 0.00 3.95
306 307 7.194278 ACGTACATACACTCACTCATATGAAC 58.806 38.462 6.90 0.00 0.00 3.18
307 308 7.329588 ACGTACATACACTCACTCATATGAA 57.670 36.000 6.90 0.00 0.00 2.57
308 309 6.937436 ACGTACATACACTCACTCATATGA 57.063 37.500 5.07 5.07 0.00 2.15
309 310 8.290325 ACATACGTACATACACTCACTCATATG 58.710 37.037 0.00 0.00 0.00 1.78
310 311 8.392372 ACATACGTACATACACTCACTCATAT 57.608 34.615 0.00 0.00 0.00 1.78
311 312 7.797038 ACATACGTACATACACTCACTCATA 57.203 36.000 0.00 0.00 0.00 2.15
312 313 6.694877 ACATACGTACATACACTCACTCAT 57.305 37.500 0.00 0.00 0.00 2.90
313 314 7.496591 TCATACATACGTACATACACTCACTCA 59.503 37.037 0.00 0.00 0.00 3.41
314 315 7.858583 TCATACATACGTACATACACTCACTC 58.141 38.462 0.00 0.00 0.00 3.51
315 316 7.797038 TCATACATACGTACATACACTCACT 57.203 36.000 0.00 0.00 0.00 3.41
316 317 7.911727 TGTTCATACATACGTACATACACTCAC 59.088 37.037 0.00 0.00 0.00 3.51
317 318 7.987649 TGTTCATACATACGTACATACACTCA 58.012 34.615 0.00 0.00 0.00 3.41
318 319 9.459640 AATGTTCATACATACGTACATACACTC 57.540 33.333 0.00 0.00 44.14 3.51
319 320 9.811995 AAATGTTCATACATACGTACATACACT 57.188 29.630 0.00 0.00 44.14 3.55
320 321 9.843874 CAAATGTTCATACATACGTACATACAC 57.156 33.333 0.00 0.00 44.14 2.90
321 322 8.544597 GCAAATGTTCATACATACGTACATACA 58.455 33.333 0.00 0.00 44.14 2.29
322 323 7.734297 CGCAAATGTTCATACATACGTACATAC 59.266 37.037 0.00 0.00 44.14 2.39
323 324 7.435784 ACGCAAATGTTCATACATACGTACATA 59.564 33.333 0.00 0.00 44.14 2.29
324 325 6.256975 ACGCAAATGTTCATACATACGTACAT 59.743 34.615 0.00 0.00 44.14 2.29
325 326 5.577554 ACGCAAATGTTCATACATACGTACA 59.422 36.000 0.00 0.00 44.14 2.90
326 327 6.020121 AGACGCAAATGTTCATACATACGTAC 60.020 38.462 0.00 0.00 44.14 3.67
327 328 6.020201 CAGACGCAAATGTTCATACATACGTA 60.020 38.462 0.00 0.00 44.14 3.57
328 329 4.868171 AGACGCAAATGTTCATACATACGT 59.132 37.500 11.24 11.24 44.14 3.57
329 330 5.190342 CAGACGCAAATGTTCATACATACG 58.810 41.667 0.00 0.00 44.14 3.06
330 331 6.106877 ACAGACGCAAATGTTCATACATAC 57.893 37.500 0.00 0.00 44.14 2.39
331 332 7.039270 AGTACAGACGCAAATGTTCATACATA 58.961 34.615 0.00 0.00 44.14 2.29
332 333 5.874810 AGTACAGACGCAAATGTTCATACAT 59.125 36.000 0.00 0.00 46.85 2.29
333 334 5.234752 AGTACAGACGCAAATGTTCATACA 58.765 37.500 0.00 0.00 38.95 2.29
334 335 5.779806 AGTACAGACGCAAATGTTCATAC 57.220 39.130 0.00 0.00 0.00 2.39
335 336 7.039270 ACATAGTACAGACGCAAATGTTCATA 58.961 34.615 0.00 0.00 0.00 2.15
336 337 5.874810 ACATAGTACAGACGCAAATGTTCAT 59.125 36.000 0.00 0.00 0.00 2.57
337 338 5.234752 ACATAGTACAGACGCAAATGTTCA 58.765 37.500 0.00 0.00 0.00 3.18
338 339 5.779806 ACATAGTACAGACGCAAATGTTC 57.220 39.130 0.00 0.00 0.00 3.18
339 340 7.661127 TTAACATAGTACAGACGCAAATGTT 57.339 32.000 0.00 0.00 34.61 2.71
340 341 7.661127 TTTAACATAGTACAGACGCAAATGT 57.339 32.000 0.00 0.00 0.00 2.71
341 342 8.942669 TTTTTAACATAGTACAGACGCAAATG 57.057 30.769 0.00 0.00 0.00 2.32
342 343 8.234546 CCTTTTTAACATAGTACAGACGCAAAT 58.765 33.333 0.00 0.00 0.00 2.32
343 344 7.441760 TCCTTTTTAACATAGTACAGACGCAAA 59.558 33.333 0.00 0.00 0.00 3.68
344 345 6.930164 TCCTTTTTAACATAGTACAGACGCAA 59.070 34.615 0.00 0.00 0.00 4.85
345 346 6.366877 GTCCTTTTTAACATAGTACAGACGCA 59.633 38.462 0.00 0.00 0.00 5.24
346 347 6.183360 GGTCCTTTTTAACATAGTACAGACGC 60.183 42.308 0.00 0.00 0.00 5.19
347 348 6.312180 GGGTCCTTTTTAACATAGTACAGACG 59.688 42.308 0.00 0.00 0.00 4.18
348 349 6.596888 GGGGTCCTTTTTAACATAGTACAGAC 59.403 42.308 0.00 0.00 0.00 3.51
349 350 6.574859 CGGGGTCCTTTTTAACATAGTACAGA 60.575 42.308 0.00 0.00 0.00 3.41
350 351 5.583457 CGGGGTCCTTTTTAACATAGTACAG 59.417 44.000 0.00 0.00 0.00 2.74
351 352 5.248020 TCGGGGTCCTTTTTAACATAGTACA 59.752 40.000 0.00 0.00 0.00 2.90
352 353 5.733676 TCGGGGTCCTTTTTAACATAGTAC 58.266 41.667 0.00 0.00 0.00 2.73
353 354 6.564557 ATCGGGGTCCTTTTTAACATAGTA 57.435 37.500 0.00 0.00 0.00 1.82
354 355 4.914177 TCGGGGTCCTTTTTAACATAGT 57.086 40.909 0.00 0.00 0.00 2.12
355 356 6.018507 CGTTATCGGGGTCCTTTTTAACATAG 60.019 42.308 0.00 0.00 0.00 2.23
356 357 5.816777 CGTTATCGGGGTCCTTTTTAACATA 59.183 40.000 0.00 0.00 0.00 2.29
357 358 4.637091 CGTTATCGGGGTCCTTTTTAACAT 59.363 41.667 0.00 0.00 0.00 2.71
358 359 4.002316 CGTTATCGGGGTCCTTTTTAACA 58.998 43.478 0.00 0.00 0.00 2.41
359 360 3.181507 GCGTTATCGGGGTCCTTTTTAAC 60.182 47.826 0.00 0.00 37.56 2.01
360 361 3.009026 GCGTTATCGGGGTCCTTTTTAA 58.991 45.455 0.00 0.00 37.56 1.52
361 362 2.631267 GCGTTATCGGGGTCCTTTTTA 58.369 47.619 0.00 0.00 37.56 1.52
362 363 1.456296 GCGTTATCGGGGTCCTTTTT 58.544 50.000 0.00 0.00 37.56 1.94
363 364 0.393402 GGCGTTATCGGGGTCCTTTT 60.393 55.000 0.00 0.00 37.56 2.27
364 365 1.222661 GGCGTTATCGGGGTCCTTT 59.777 57.895 0.00 0.00 37.56 3.11
365 366 2.738938 GGGCGTTATCGGGGTCCTT 61.739 63.158 0.00 0.00 37.56 3.36
366 367 3.159347 GGGCGTTATCGGGGTCCT 61.159 66.667 0.00 0.00 37.56 3.85
367 368 2.540028 TTTGGGCGTTATCGGGGTCC 62.540 60.000 0.00 0.00 37.56 4.46
368 369 1.078285 TTTGGGCGTTATCGGGGTC 60.078 57.895 0.00 0.00 37.56 4.46
369 370 1.377594 GTTTGGGCGTTATCGGGGT 60.378 57.895 0.00 0.00 37.56 4.95
370 371 2.466140 CGTTTGGGCGTTATCGGGG 61.466 63.158 0.00 0.00 37.56 5.73
371 372 1.742510 ACGTTTGGGCGTTATCGGG 60.743 57.895 0.00 0.00 43.04 5.14
372 373 3.879159 ACGTTTGGGCGTTATCGG 58.121 55.556 0.00 0.00 43.04 4.18
401 402 9.332301 GCCATAAAAATGTTTGATTTGTCATTG 57.668 29.630 0.00 0.00 32.05 2.82
402 403 9.064706 TGCCATAAAAATGTTTGATTTGTCATT 57.935 25.926 0.00 0.00 32.86 2.57
403 404 8.618702 TGCCATAAAAATGTTTGATTTGTCAT 57.381 26.923 0.00 0.00 0.00 3.06
404 405 8.442632 TTGCCATAAAAATGTTTGATTTGTCA 57.557 26.923 0.00 0.00 0.00 3.58
405 406 9.896263 AATTGCCATAAAAATGTTTGATTTGTC 57.104 25.926 0.00 0.00 0.00 3.18
419 420 9.360093 CCTCACGTTATTAAAATTGCCATAAAA 57.640 29.630 0.00 0.00 0.00 1.52
420 421 8.740906 TCCTCACGTTATTAAAATTGCCATAAA 58.259 29.630 0.00 0.00 0.00 1.40
421 422 8.282455 TCCTCACGTTATTAAAATTGCCATAA 57.718 30.769 0.00 0.00 0.00 1.90
422 423 7.867305 TCCTCACGTTATTAAAATTGCCATA 57.133 32.000 0.00 0.00 0.00 2.74
423 424 6.767524 TCCTCACGTTATTAAAATTGCCAT 57.232 33.333 0.00 0.00 0.00 4.40
424 425 6.559810 CATCCTCACGTTATTAAAATTGCCA 58.440 36.000 0.00 0.00 0.00 4.92
425 426 5.458779 GCATCCTCACGTTATTAAAATTGCC 59.541 40.000 0.00 0.00 0.00 4.52
426 427 5.458779 GGCATCCTCACGTTATTAAAATTGC 59.541 40.000 0.00 0.00 0.00 3.56
427 428 6.559810 TGGCATCCTCACGTTATTAAAATTG 58.440 36.000 0.00 0.00 0.00 2.32
428 429 6.767524 TGGCATCCTCACGTTATTAAAATT 57.232 33.333 0.00 0.00 0.00 1.82
429 430 6.377146 ACTTGGCATCCTCACGTTATTAAAAT 59.623 34.615 0.00 0.00 0.00 1.82
430 431 5.708230 ACTTGGCATCCTCACGTTATTAAAA 59.292 36.000 0.00 0.00 0.00 1.52
431 432 5.250200 ACTTGGCATCCTCACGTTATTAAA 58.750 37.500 0.00 0.00 0.00 1.52
432 433 4.839121 ACTTGGCATCCTCACGTTATTAA 58.161 39.130 0.00 0.00 0.00 1.40
433 434 4.481368 ACTTGGCATCCTCACGTTATTA 57.519 40.909 0.00 0.00 0.00 0.98
434 435 3.350219 ACTTGGCATCCTCACGTTATT 57.650 42.857 0.00 0.00 0.00 1.40
435 436 3.350219 AACTTGGCATCCTCACGTTAT 57.650 42.857 0.00 0.00 0.00 1.89
436 437 2.851263 AACTTGGCATCCTCACGTTA 57.149 45.000 0.00 0.00 0.00 3.18
437 438 1.981256 AAACTTGGCATCCTCACGTT 58.019 45.000 0.00 0.00 0.00 3.99
438 439 2.851263 TAAACTTGGCATCCTCACGT 57.149 45.000 0.00 0.00 0.00 4.49
439 440 4.414852 CAATTAAACTTGGCATCCTCACG 58.585 43.478 0.00 0.00 0.00 4.35
440 441 4.747810 CCAATTAAACTTGGCATCCTCAC 58.252 43.478 0.00 0.00 39.32 3.51
450 451 3.125658 GCCATGCTTGCCAATTAAACTTG 59.874 43.478 0.00 0.00 0.00 3.16
451 452 3.244491 TGCCATGCTTGCCAATTAAACTT 60.244 39.130 0.00 0.00 0.00 2.66
452 453 2.302445 TGCCATGCTTGCCAATTAAACT 59.698 40.909 0.00 0.00 0.00 2.66
453 454 2.697654 TGCCATGCTTGCCAATTAAAC 58.302 42.857 0.00 0.00 0.00 2.01
454 455 3.413846 TTGCCATGCTTGCCAATTAAA 57.586 38.095 0.00 0.00 0.00 1.52
455 456 3.413846 TTTGCCATGCTTGCCAATTAA 57.586 38.095 0.00 0.00 0.00 1.40
456 457 3.630892 ATTTGCCATGCTTGCCAATTA 57.369 38.095 0.00 0.00 0.00 1.40
457 458 2.500392 ATTTGCCATGCTTGCCAATT 57.500 40.000 0.00 0.00 0.00 2.32
458 459 2.290387 TGAATTTGCCATGCTTGCCAAT 60.290 40.909 0.00 0.00 0.00 3.16
459 460 1.071857 TGAATTTGCCATGCTTGCCAA 59.928 42.857 0.00 0.00 0.00 4.52
460 461 0.685660 TGAATTTGCCATGCTTGCCA 59.314 45.000 0.00 0.00 0.00 4.92
461 462 1.668751 CATGAATTTGCCATGCTTGCC 59.331 47.619 0.00 0.00 35.55 4.52
467 468 4.751060 ACACTAAGCATGAATTTGCCATG 58.249 39.130 0.00 0.00 43.83 3.66
468 469 6.720112 ATACACTAAGCATGAATTTGCCAT 57.280 33.333 0.00 0.00 43.83 4.40
469 470 6.528537 AATACACTAAGCATGAATTTGCCA 57.471 33.333 0.00 0.00 43.83 4.92
470 471 7.832503 AAAATACACTAAGCATGAATTTGCC 57.167 32.000 0.00 0.00 43.83 4.52
493 494 3.376546 GCACAACAATTTCCTGGCAAAAA 59.623 39.130 0.00 0.00 0.00 1.94
494 495 2.941720 GCACAACAATTTCCTGGCAAAA 59.058 40.909 0.00 0.00 0.00 2.44
495 496 2.093288 TGCACAACAATTTCCTGGCAAA 60.093 40.909 0.00 0.00 0.00 3.68
496 497 1.483827 TGCACAACAATTTCCTGGCAA 59.516 42.857 0.00 0.00 0.00 4.52
497 498 1.117994 TGCACAACAATTTCCTGGCA 58.882 45.000 0.00 0.00 0.00 4.92
498 499 2.070783 CATGCACAACAATTTCCTGGC 58.929 47.619 0.00 0.00 0.00 4.85
499 500 3.006110 AGACATGCACAACAATTTCCTGG 59.994 43.478 0.00 0.00 0.00 4.45
500 501 4.247267 AGACATGCACAACAATTTCCTG 57.753 40.909 0.00 0.00 0.00 3.86
501 502 5.536161 AGTTAGACATGCACAACAATTTCCT 59.464 36.000 0.00 0.00 0.00 3.36
502 503 5.772521 AGTTAGACATGCACAACAATTTCC 58.227 37.500 0.00 0.00 0.00 3.13
503 504 8.690840 GTTTAGTTAGACATGCACAACAATTTC 58.309 33.333 0.00 0.00 0.00 2.17
504 505 8.413229 AGTTTAGTTAGACATGCACAACAATTT 58.587 29.630 0.00 0.00 0.00 1.82
505 506 7.940850 AGTTTAGTTAGACATGCACAACAATT 58.059 30.769 0.00 0.00 0.00 2.32
506 507 7.510549 AGTTTAGTTAGACATGCACAACAAT 57.489 32.000 0.00 0.00 0.00 2.71
507 508 6.935741 AGTTTAGTTAGACATGCACAACAA 57.064 33.333 0.00 0.00 0.00 2.83
508 509 6.724263 CAAGTTTAGTTAGACATGCACAACA 58.276 36.000 0.00 0.00 0.00 3.33
509 510 5.625311 GCAAGTTTAGTTAGACATGCACAAC 59.375 40.000 0.00 0.00 39.51 3.32
510 511 5.278266 GGCAAGTTTAGTTAGACATGCACAA 60.278 40.000 10.73 0.00 40.96 3.33
511 512 4.215399 GGCAAGTTTAGTTAGACATGCACA 59.785 41.667 10.73 0.00 40.96 4.57
512 513 4.215399 TGGCAAGTTTAGTTAGACATGCAC 59.785 41.667 10.73 3.47 40.96 4.57
513 514 4.393834 TGGCAAGTTTAGTTAGACATGCA 58.606 39.130 10.73 0.00 40.96 3.96
514 515 5.154222 GTTGGCAAGTTTAGTTAGACATGC 58.846 41.667 0.00 2.53 39.13 4.06
515 516 5.473504 AGGTTGGCAAGTTTAGTTAGACATG 59.526 40.000 0.00 0.00 0.00 3.21
516 517 5.631119 AGGTTGGCAAGTTTAGTTAGACAT 58.369 37.500 0.00 0.00 0.00 3.06
517 518 5.043737 AGGTTGGCAAGTTTAGTTAGACA 57.956 39.130 0.00 0.00 0.00 3.41
518 519 4.151867 CGAGGTTGGCAAGTTTAGTTAGAC 59.848 45.833 0.00 0.00 0.00 2.59
519 520 4.312443 CGAGGTTGGCAAGTTTAGTTAGA 58.688 43.478 0.00 0.00 0.00 2.10
520 521 3.120304 GCGAGGTTGGCAAGTTTAGTTAG 60.120 47.826 0.00 0.00 0.00 2.34
521 522 2.809696 GCGAGGTTGGCAAGTTTAGTTA 59.190 45.455 0.00 0.00 0.00 2.24
522 523 1.607148 GCGAGGTTGGCAAGTTTAGTT 59.393 47.619 0.00 0.00 0.00 2.24
523 524 1.235724 GCGAGGTTGGCAAGTTTAGT 58.764 50.000 0.00 0.00 0.00 2.24
524 525 1.234821 TGCGAGGTTGGCAAGTTTAG 58.765 50.000 0.00 0.00 37.49 1.85
525 526 1.810151 GATGCGAGGTTGGCAAGTTTA 59.190 47.619 0.00 0.00 44.66 2.01
526 527 0.598065 GATGCGAGGTTGGCAAGTTT 59.402 50.000 0.00 0.00 44.66 2.66
527 528 0.537143 TGATGCGAGGTTGGCAAGTT 60.537 50.000 0.00 0.00 44.66 2.66
528 529 1.073025 TGATGCGAGGTTGGCAAGT 59.927 52.632 0.00 0.00 44.66 3.16
529 530 0.957395 AGTGATGCGAGGTTGGCAAG 60.957 55.000 0.00 0.00 44.66 4.01
530 531 0.323302 TAGTGATGCGAGGTTGGCAA 59.677 50.000 0.00 0.00 44.66 4.52
531 532 0.323302 TTAGTGATGCGAGGTTGGCA 59.677 50.000 0.00 0.00 45.71 4.92
532 533 1.448985 TTTAGTGATGCGAGGTTGGC 58.551 50.000 0.00 0.00 0.00 4.52
533 534 4.082787 ACAATTTTAGTGATGCGAGGTTGG 60.083 41.667 0.00 0.00 0.00 3.77
534 535 5.046910 ACAATTTTAGTGATGCGAGGTTG 57.953 39.130 0.00 0.00 0.00 3.77
535 536 4.759693 TGACAATTTTAGTGATGCGAGGTT 59.240 37.500 0.00 0.00 0.00 3.50
536 537 4.323417 TGACAATTTTAGTGATGCGAGGT 58.677 39.130 0.00 0.00 0.00 3.85
537 538 4.944962 TGACAATTTTAGTGATGCGAGG 57.055 40.909 0.00 0.00 0.00 4.63
538 539 8.894409 TTTAATGACAATTTTAGTGATGCGAG 57.106 30.769 0.00 0.00 0.00 5.03
539 540 9.684448 TTTTTAATGACAATTTTAGTGATGCGA 57.316 25.926 0.00 0.00 0.00 5.10
540 541 9.726034 GTTTTTAATGACAATTTTAGTGATGCG 57.274 29.630 0.00 0.00 0.00 4.73
541 542 9.726034 CGTTTTTAATGACAATTTTAGTGATGC 57.274 29.630 0.00 0.00 0.00 3.91
551 552 9.432077 GCAAATCAAACGTTTTTAATGACAATT 57.568 25.926 11.66 0.45 0.00 2.32
552 553 8.067189 GGCAAATCAAACGTTTTTAATGACAAT 58.933 29.630 11.66 0.00 0.00 2.71
553 554 7.402640 GGCAAATCAAACGTTTTTAATGACAA 58.597 30.769 11.66 0.00 0.00 3.18
554 555 6.018669 GGGCAAATCAAACGTTTTTAATGACA 60.019 34.615 11.66 0.00 0.00 3.58
555 556 6.201997 AGGGCAAATCAAACGTTTTTAATGAC 59.798 34.615 11.66 10.48 0.00 3.06
556 557 6.201806 CAGGGCAAATCAAACGTTTTTAATGA 59.798 34.615 11.66 6.43 0.00 2.57
557 558 6.201806 TCAGGGCAAATCAAACGTTTTTAATG 59.798 34.615 11.66 9.67 0.00 1.90
558 559 6.284459 TCAGGGCAAATCAAACGTTTTTAAT 58.716 32.000 11.66 2.68 0.00 1.40
559 560 5.661458 TCAGGGCAAATCAAACGTTTTTAA 58.339 33.333 11.66 0.08 0.00 1.52
560 561 5.263968 TCAGGGCAAATCAAACGTTTTTA 57.736 34.783 11.66 2.82 0.00 1.52
561 562 4.130286 TCAGGGCAAATCAAACGTTTTT 57.870 36.364 11.66 0.93 0.00 1.94
562 563 3.810310 TCAGGGCAAATCAAACGTTTT 57.190 38.095 11.66 0.00 0.00 2.43
563 564 3.320541 TGATCAGGGCAAATCAAACGTTT 59.679 39.130 7.96 7.96 0.00 3.60
564 565 2.890311 TGATCAGGGCAAATCAAACGTT 59.110 40.909 0.00 0.00 0.00 3.99
565 566 2.513753 TGATCAGGGCAAATCAAACGT 58.486 42.857 0.00 0.00 0.00 3.99
566 567 3.574284 TTGATCAGGGCAAATCAAACG 57.426 42.857 0.00 0.00 38.57 3.60
569 570 4.097741 CGGTATTTGATCAGGGCAAATCAA 59.902 41.667 0.00 4.83 42.95 2.57
570 571 3.631686 CGGTATTTGATCAGGGCAAATCA 59.368 43.478 0.00 0.00 42.95 2.57
571 572 3.550842 GCGGTATTTGATCAGGGCAAATC 60.551 47.826 0.00 0.00 42.95 2.17
572 573 2.362077 GCGGTATTTGATCAGGGCAAAT 59.638 45.455 0.00 0.00 45.15 2.32
573 574 1.748493 GCGGTATTTGATCAGGGCAAA 59.252 47.619 0.00 0.00 39.31 3.68
574 575 1.388547 GCGGTATTTGATCAGGGCAA 58.611 50.000 0.00 0.00 0.00 4.52
575 576 0.813610 CGCGGTATTTGATCAGGGCA 60.814 55.000 0.00 0.00 0.00 5.36
576 577 1.507141 CCGCGGTATTTGATCAGGGC 61.507 60.000 19.50 0.00 0.00 5.19
577 578 0.884704 CCCGCGGTATTTGATCAGGG 60.885 60.000 26.12 0.00 0.00 4.45
578 579 0.179056 ACCCGCGGTATTTGATCAGG 60.179 55.000 26.12 6.21 32.11 3.86
579 580 0.937304 CACCCGCGGTATTTGATCAG 59.063 55.000 26.12 6.79 32.11 2.90
580 581 0.250793 ACACCCGCGGTATTTGATCA 59.749 50.000 26.12 0.00 32.11 2.92
581 582 2.228138 TACACCCGCGGTATTTGATC 57.772 50.000 26.12 0.00 32.11 2.92
582 583 2.922740 ATACACCCGCGGTATTTGAT 57.077 45.000 26.12 6.54 32.11 2.57
583 584 2.695127 AATACACCCGCGGTATTTGA 57.305 45.000 26.12 4.12 38.02 2.69
584 585 3.768468 AAAATACACCCGCGGTATTTG 57.232 42.857 24.58 18.18 45.69 2.32
586 587 3.613030 AGAAAAATACACCCGCGGTATT 58.387 40.909 26.12 18.24 41.80 1.89
587 588 3.271055 AGAAAAATACACCCGCGGTAT 57.729 42.857 26.12 12.84 32.11 2.73
588 589 2.743126 CAAGAAAAATACACCCGCGGTA 59.257 45.455 26.12 10.76 32.11 4.02
626 627 4.201744 CGGGTATGTTCCATTTACGTTCAC 60.202 45.833 0.00 0.00 0.00 3.18
637 638 0.899720 GAGTCCACGGGTATGTTCCA 59.100 55.000 0.00 0.00 0.00 3.53
733 737 1.958579 ACACACACATGCAAAGCAGAT 59.041 42.857 0.00 0.00 43.65 2.90
746 750 3.582120 CACCGCCACCACACACAC 61.582 66.667 0.00 0.00 0.00 3.82
770 774 1.652563 GATTTTGATACGGCCGGGC 59.347 57.895 31.76 20.04 0.00 6.13
841 845 3.661648 CTTGGGTGGAGGGGGTGG 61.662 72.222 0.00 0.00 0.00 4.61
973 978 2.435059 GCTCCAAGCTCGGTGGTC 60.435 66.667 2.88 0.00 38.45 4.02
1879 1890 1.888512 TGCTTCATCTCTGGCCAAAAC 59.111 47.619 7.01 0.00 0.00 2.43
2097 2492 5.049612 GGGCAACTTACTAGTCAACTTCAAC 60.050 44.000 0.00 0.00 31.99 3.18
2274 2673 3.560503 CTCGATTCCTCGTGCTAGAATC 58.439 50.000 0.00 0.00 45.25 2.52
2284 2683 2.604046 ACCATTTCCTCGATTCCTCG 57.396 50.000 0.00 0.00 46.41 4.63
2332 2731 7.158021 TGAGCTTTTCTTTTTGGTTTTCAGAA 58.842 30.769 0.00 0.00 0.00 3.02
2343 2742 8.362639 TCTGCATTTCTATGAGCTTTTCTTTTT 58.637 29.630 0.00 0.00 33.37 1.94
2348 2747 5.732810 GCCTCTGCATTTCTATGAGCTTTTC 60.733 44.000 0.00 0.00 37.47 2.29
2366 2765 1.267806 GTGATGGTGTGTTTGCCTCTG 59.732 52.381 0.00 0.00 0.00 3.35
2380 2779 4.503741 AAAATTCAGTTGGTCGTGATGG 57.496 40.909 0.00 0.00 0.00 3.51
2387 2786 9.886132 TCTACTCCTATAAAAATTCAGTTGGTC 57.114 33.333 0.00 0.00 0.00 4.02
2478 2878 6.934645 TCCTTTCATTCACTCGTGAGTTTATT 59.065 34.615 0.00 0.00 40.20 1.40
2479 2879 6.464222 TCCTTTCATTCACTCGTGAGTTTAT 58.536 36.000 0.00 0.00 40.20 1.40
2589 2989 4.881920 ACTGATATTTGTGTTGTTTGCCC 58.118 39.130 0.00 0.00 0.00 5.36


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.