Multiple sequence alignment - TraesCS5D01G450000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G450000 chr5D 100.000 2684 0 0 1 2684 498629125 498626442 0.000000e+00 4957
1 TraesCS5D01G450000 chr5D 96.694 121 4 0 1 121 498654183 498654063 4.530000e-48 202
2 TraesCS5D01G450000 chr5D 79.426 209 23 6 1544 1733 498712899 498712692 2.170000e-26 130
3 TraesCS5D01G450000 chr5D 92.045 88 4 2 35 121 498714292 498714207 1.310000e-23 121
4 TraesCS5D01G450000 chr5B 88.099 1168 80 27 601 1735 618126472 618125331 0.000000e+00 1332
5 TraesCS5D01G450000 chr5B 91.864 295 14 4 121 415 618126815 618126531 1.160000e-108 403
6 TraesCS5D01G450000 chr5B 90.254 236 12 6 2446 2672 618125118 618124885 5.620000e-77 298
7 TraesCS5D01G450000 chr5B 95.575 113 5 0 9 121 618126963 618126851 5.900000e-42 182
8 TraesCS5D01G450000 chr5B 78.571 266 25 21 6 240 618156267 618156003 2.150000e-31 147
9 TraesCS5D01G450000 chr5A 90.223 941 63 15 815 1733 622992565 622991632 0.000000e+00 1201
10 TraesCS5D01G450000 chr5A 81.448 221 21 10 1532 1733 623012184 623011965 2.140000e-36 163
11 TraesCS5D01G450000 chr5A 83.152 184 19 2 2258 2441 622991193 622991022 9.950000e-35 158
12 TraesCS5D01G450000 chr5A 89.474 95 9 1 1727 1821 623011922 623011829 4.690000e-23 119


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G450000 chr5D 498626442 498629125 2683 True 4957.00 4957 100.0000 1 2684 1 chr5D.!!$R1 2683
1 TraesCS5D01G450000 chr5B 618124885 618126963 2078 True 553.75 1332 91.4480 9 2672 4 chr5B.!!$R2 2663
2 TraesCS5D01G450000 chr5A 622991022 622992565 1543 True 679.50 1201 86.6875 815 2441 2 chr5A.!!$R1 1626

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
572 616 0.169009 GCAGATTTCGCCACTTGGAC 59.831 55.0 0.0 0.0 37.39 4.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2032 2205 0.036952 CAGTGACTCGTGCCCTGAAT 60.037 55.0 0.0 0.0 0.0 2.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 2.232696 TGTAAACTGGATGCAGTCGCTA 59.767 45.455 21.00 9.64 39.64 4.26
72 73 4.443394 GTGTCGACAAACTTTATCGTCACT 59.557 41.667 21.95 0.00 45.25 3.41
89 90 4.515432 GTCACTGAACGTTAAGCTTGTTC 58.485 43.478 12.88 17.09 41.75 3.18
149 186 1.913762 CCGAGGTTGGTCTGGTCCT 60.914 63.158 0.00 0.00 0.00 3.85
165 202 1.746615 CCTGTGCGGACTGGGATTG 60.747 63.158 22.79 0.00 37.50 2.67
202 239 2.491152 GCATGAATGGCACGGTGG 59.509 61.111 10.60 0.00 0.00 4.61
203 240 2.342650 GCATGAATGGCACGGTGGT 61.343 57.895 10.60 0.00 0.00 4.16
204 241 1.802636 CATGAATGGCACGGTGGTC 59.197 57.895 10.60 0.00 0.00 4.02
216 253 1.727467 GGTGGTCGTATGGCATTGC 59.273 57.895 4.78 0.00 0.00 3.56
258 295 1.095807 GCCCGGAGAATGTAACTGGC 61.096 60.000 0.73 0.00 0.00 4.85
280 317 4.675565 GCTCGTTAGCTTTTCCTTTTTGTC 59.324 41.667 0.00 0.00 45.85 3.18
290 327 1.953686 TCCTTTTTGTCTTGCGGGAAG 59.046 47.619 2.45 2.45 0.00 3.46
365 402 0.178975 AAGGTCGGTGAATTGGGCAA 60.179 50.000 0.00 0.00 0.00 4.52
412 456 3.513912 TCATATGTTCTGTGTCGTTCCCT 59.486 43.478 1.90 0.00 0.00 4.20
420 464 2.435059 GTCGTTCCCTGGAGCAGC 60.435 66.667 0.00 0.00 0.00 5.25
422 466 2.743928 CGTTCCCTGGAGCAGCAC 60.744 66.667 0.00 0.00 0.00 4.40
432 476 1.550524 TGGAGCAGCACTAGTAACCTG 59.449 52.381 0.00 4.10 0.00 4.00
433 477 1.134670 GGAGCAGCACTAGTAACCTGG 60.135 57.143 15.18 0.00 0.00 4.45
434 478 0.250513 AGCAGCACTAGTAACCTGGC 59.749 55.000 15.18 6.13 0.00 4.85
435 479 1.084370 GCAGCACTAGTAACCTGGCG 61.084 60.000 15.18 4.65 0.00 5.69
436 480 1.084370 CAGCACTAGTAACCTGGCGC 61.084 60.000 0.00 0.00 0.00 6.53
437 481 1.218316 GCACTAGTAACCTGGCGCT 59.782 57.895 7.64 0.00 0.00 5.92
438 482 0.391263 GCACTAGTAACCTGGCGCTT 60.391 55.000 7.64 0.00 0.00 4.68
439 483 1.359848 CACTAGTAACCTGGCGCTTG 58.640 55.000 7.64 0.00 0.00 4.01
440 484 0.391263 ACTAGTAACCTGGCGCTTGC 60.391 55.000 7.64 0.00 38.11 4.01
441 485 1.421410 CTAGTAACCTGGCGCTTGCG 61.421 60.000 7.64 10.90 40.46 4.85
442 486 2.845752 TAGTAACCTGGCGCTTGCGG 62.846 60.000 16.79 5.28 40.46 5.69
448 492 4.386951 TGGCGCTTGCGGCTTCTA 62.387 61.111 33.89 17.04 40.46 2.10
449 493 3.124921 GGCGCTTGCGGCTTCTAA 61.125 61.111 29.29 0.00 40.46 2.10
450 494 2.098489 GCGCTTGCGGCTTCTAAC 59.902 61.111 16.79 0.00 39.13 2.34
451 495 2.785258 CGCTTGCGGCTTCTAACC 59.215 61.111 7.16 0.00 39.13 2.85
452 496 2.032634 CGCTTGCGGCTTCTAACCA 61.033 57.895 7.16 0.00 39.13 3.67
453 497 1.573829 CGCTTGCGGCTTCTAACCAA 61.574 55.000 7.16 0.00 39.13 3.67
454 498 0.811281 GCTTGCGGCTTCTAACCAAT 59.189 50.000 0.00 0.00 38.06 3.16
455 499 1.202348 GCTTGCGGCTTCTAACCAATT 59.798 47.619 0.00 0.00 38.06 2.32
456 500 2.867429 CTTGCGGCTTCTAACCAATTG 58.133 47.619 0.00 0.00 0.00 2.32
457 501 0.525761 TGCGGCTTCTAACCAATTGC 59.474 50.000 0.00 0.00 0.00 3.56
458 502 0.811281 GCGGCTTCTAACCAATTGCT 59.189 50.000 0.00 0.00 0.00 3.91
459 503 1.468054 GCGGCTTCTAACCAATTGCTG 60.468 52.381 0.00 0.00 0.00 4.41
460 504 1.812571 CGGCTTCTAACCAATTGCTGT 59.187 47.619 0.00 0.00 0.00 4.40
461 505 2.228822 CGGCTTCTAACCAATTGCTGTT 59.771 45.455 0.00 2.64 0.00 3.16
462 506 3.305335 CGGCTTCTAACCAATTGCTGTTT 60.305 43.478 0.00 0.00 0.00 2.83
463 507 4.237724 GGCTTCTAACCAATTGCTGTTTC 58.762 43.478 0.00 0.00 0.00 2.78
464 508 4.021981 GGCTTCTAACCAATTGCTGTTTCT 60.022 41.667 0.00 0.00 0.00 2.52
465 509 5.183140 GGCTTCTAACCAATTGCTGTTTCTA 59.817 40.000 0.00 0.00 0.00 2.10
466 510 6.086871 GCTTCTAACCAATTGCTGTTTCTAC 58.913 40.000 0.00 0.00 0.00 2.59
467 511 6.569179 TTCTAACCAATTGCTGTTTCTACC 57.431 37.500 0.00 0.00 0.00 3.18
468 512 5.876357 TCTAACCAATTGCTGTTTCTACCT 58.124 37.500 0.00 0.00 0.00 3.08
469 513 4.853924 AACCAATTGCTGTTTCTACCTG 57.146 40.909 0.00 0.00 0.00 4.00
470 514 3.832527 ACCAATTGCTGTTTCTACCTGT 58.167 40.909 0.00 0.00 0.00 4.00
471 515 4.215109 ACCAATTGCTGTTTCTACCTGTT 58.785 39.130 0.00 0.00 0.00 3.16
472 516 5.381757 ACCAATTGCTGTTTCTACCTGTTA 58.618 37.500 0.00 0.00 0.00 2.41
473 517 6.010219 ACCAATTGCTGTTTCTACCTGTTAT 58.990 36.000 0.00 0.00 0.00 1.89
474 518 6.493458 ACCAATTGCTGTTTCTACCTGTTATT 59.507 34.615 0.00 0.00 0.00 1.40
475 519 7.668052 ACCAATTGCTGTTTCTACCTGTTATTA 59.332 33.333 0.00 0.00 0.00 0.98
476 520 8.686334 CCAATTGCTGTTTCTACCTGTTATTAT 58.314 33.333 0.00 0.00 0.00 1.28
479 523 7.083875 TGCTGTTTCTACCTGTTATTATTGC 57.916 36.000 0.00 0.00 0.00 3.56
480 524 6.884295 TGCTGTTTCTACCTGTTATTATTGCT 59.116 34.615 0.00 0.00 0.00 3.91
481 525 8.044309 TGCTGTTTCTACCTGTTATTATTGCTA 58.956 33.333 0.00 0.00 0.00 3.49
482 526 8.552034 GCTGTTTCTACCTGTTATTATTGCTAG 58.448 37.037 0.00 0.00 0.00 3.42
483 527 9.601217 CTGTTTCTACCTGTTATTATTGCTAGT 57.399 33.333 0.00 0.00 0.00 2.57
484 528 9.378551 TGTTTCTACCTGTTATTATTGCTAGTG 57.621 33.333 0.00 0.00 0.00 2.74
485 529 8.336080 GTTTCTACCTGTTATTATTGCTAGTGC 58.664 37.037 0.00 0.00 40.20 4.40
486 530 7.361457 TCTACCTGTTATTATTGCTAGTGCT 57.639 36.000 0.00 0.00 40.48 4.40
487 531 7.792032 TCTACCTGTTATTATTGCTAGTGCTT 58.208 34.615 0.00 0.00 40.48 3.91
488 532 8.265055 TCTACCTGTTATTATTGCTAGTGCTTT 58.735 33.333 0.00 0.00 40.48 3.51
489 533 7.088589 ACCTGTTATTATTGCTAGTGCTTTG 57.911 36.000 0.00 0.00 40.48 2.77
490 534 6.659242 ACCTGTTATTATTGCTAGTGCTTTGT 59.341 34.615 0.00 0.00 40.48 2.83
491 535 7.176690 ACCTGTTATTATTGCTAGTGCTTTGTT 59.823 33.333 0.00 0.00 40.48 2.83
492 536 8.028938 CCTGTTATTATTGCTAGTGCTTTGTTT 58.971 33.333 0.00 0.00 40.48 2.83
493 537 8.741101 TGTTATTATTGCTAGTGCTTTGTTTG 57.259 30.769 0.00 0.00 40.48 2.93
494 538 8.356657 TGTTATTATTGCTAGTGCTTTGTTTGT 58.643 29.630 0.00 0.00 40.48 2.83
495 539 9.834628 GTTATTATTGCTAGTGCTTTGTTTGTA 57.165 29.630 0.00 0.00 40.48 2.41
497 541 8.742554 ATTATTGCTAGTGCTTTGTTTGTAAC 57.257 30.769 0.00 0.00 40.48 2.50
498 542 5.568685 TTGCTAGTGCTTTGTTTGTAACA 57.431 34.783 0.00 0.00 38.80 2.41
499 543 5.766150 TGCTAGTGCTTTGTTTGTAACAT 57.234 34.783 0.00 0.00 39.65 2.71
500 544 5.757886 TGCTAGTGCTTTGTTTGTAACATC 58.242 37.500 0.00 0.00 39.65 3.06
501 545 5.530915 TGCTAGTGCTTTGTTTGTAACATCT 59.469 36.000 0.00 0.00 39.65 2.90
502 546 6.039270 TGCTAGTGCTTTGTTTGTAACATCTT 59.961 34.615 0.00 0.00 39.65 2.40
503 547 6.360681 GCTAGTGCTTTGTTTGTAACATCTTG 59.639 38.462 0.00 0.00 37.46 3.02
504 548 6.207691 AGTGCTTTGTTTGTAACATCTTGT 57.792 33.333 0.00 0.00 41.79 3.16
505 549 7.328277 AGTGCTTTGTTTGTAACATCTTGTA 57.672 32.000 0.00 0.00 41.79 2.41
506 550 7.417612 AGTGCTTTGTTTGTAACATCTTGTAG 58.582 34.615 0.00 0.00 41.79 2.74
507 551 6.142320 GTGCTTTGTTTGTAACATCTTGTAGC 59.858 38.462 0.00 0.00 41.79 3.58
508 552 6.039270 TGCTTTGTTTGTAACATCTTGTAGCT 59.961 34.615 0.00 0.00 41.79 3.32
509 553 6.918022 GCTTTGTTTGTAACATCTTGTAGCTT 59.082 34.615 0.00 0.00 41.79 3.74
510 554 7.113544 GCTTTGTTTGTAACATCTTGTAGCTTC 59.886 37.037 0.00 0.00 41.79 3.86
511 555 7.561021 TTGTTTGTAACATCTTGTAGCTTCA 57.439 32.000 0.00 0.00 41.79 3.02
512 556 6.954944 TGTTTGTAACATCTTGTAGCTTCAC 58.045 36.000 0.00 0.00 36.25 3.18
513 557 6.765989 TGTTTGTAACATCTTGTAGCTTCACT 59.234 34.615 0.00 0.00 36.25 3.41
514 558 7.929245 TGTTTGTAACATCTTGTAGCTTCACTA 59.071 33.333 0.00 0.00 36.25 2.74
523 567 3.594603 GTAGCTTCACTACTCCAAGCA 57.405 47.619 0.00 0.00 46.65 3.91
524 568 2.464157 AGCTTCACTACTCCAAGCAC 57.536 50.000 5.73 0.00 44.24 4.40
525 569 1.002544 AGCTTCACTACTCCAAGCACC 59.997 52.381 5.73 0.00 44.24 5.01
526 570 1.002544 GCTTCACTACTCCAAGCACCT 59.997 52.381 0.00 0.00 41.87 4.00
527 571 2.233922 GCTTCACTACTCCAAGCACCTA 59.766 50.000 0.00 0.00 41.87 3.08
528 572 3.851098 CTTCACTACTCCAAGCACCTAC 58.149 50.000 0.00 0.00 0.00 3.18
529 573 3.170991 TCACTACTCCAAGCACCTACT 57.829 47.619 0.00 0.00 0.00 2.57
530 574 3.507411 TCACTACTCCAAGCACCTACTT 58.493 45.455 0.00 0.00 0.00 2.24
531 575 3.258372 TCACTACTCCAAGCACCTACTTG 59.742 47.826 0.00 0.00 45.42 3.16
542 586 6.949352 AAGCACCTACTTGAAATATCCATG 57.051 37.500 0.00 0.00 0.00 3.66
543 587 6.006275 AGCACCTACTTGAAATATCCATGT 57.994 37.500 0.00 0.00 0.00 3.21
544 588 6.426587 AGCACCTACTTGAAATATCCATGTT 58.573 36.000 0.00 0.00 0.00 2.71
545 589 6.891908 AGCACCTACTTGAAATATCCATGTTT 59.108 34.615 0.00 0.00 0.00 2.83
546 590 8.052748 AGCACCTACTTGAAATATCCATGTTTA 58.947 33.333 0.00 0.00 0.00 2.01
547 591 8.345565 GCACCTACTTGAAATATCCATGTTTAG 58.654 37.037 0.00 0.00 0.00 1.85
548 592 8.840321 CACCTACTTGAAATATCCATGTTTAGG 58.160 37.037 0.00 0.00 0.00 2.69
549 593 7.502561 ACCTACTTGAAATATCCATGTTTAGGC 59.497 37.037 0.00 0.00 0.00 3.93
550 594 7.502226 CCTACTTGAAATATCCATGTTTAGGCA 59.498 37.037 0.00 0.00 0.00 4.75
551 595 7.902920 ACTTGAAATATCCATGTTTAGGCAT 57.097 32.000 0.00 0.00 0.00 4.40
552 596 7.719483 ACTTGAAATATCCATGTTTAGGCATG 58.281 34.615 0.00 0.00 44.18 4.06
560 604 4.395959 CATGTTTAGGCATGGCAGATTT 57.604 40.909 22.64 2.29 41.70 2.17
561 605 4.365723 CATGTTTAGGCATGGCAGATTTC 58.634 43.478 22.64 7.08 41.70 2.17
562 606 2.423185 TGTTTAGGCATGGCAGATTTCG 59.577 45.455 22.64 0.00 0.00 3.46
563 607 1.024271 TTAGGCATGGCAGATTTCGC 58.976 50.000 22.64 0.00 0.00 4.70
571 615 2.555123 GCAGATTTCGCCACTTGGA 58.445 52.632 0.00 0.00 37.39 3.53
572 616 0.169009 GCAGATTTCGCCACTTGGAC 59.831 55.000 0.00 0.00 37.39 4.02
573 617 1.522668 CAGATTTCGCCACTTGGACA 58.477 50.000 0.00 0.00 37.39 4.02
574 618 1.879380 CAGATTTCGCCACTTGGACAA 59.121 47.619 0.00 0.00 37.39 3.18
575 619 2.095567 CAGATTTCGCCACTTGGACAAG 60.096 50.000 10.34 10.34 43.79 3.16
576 620 2.151202 GATTTCGCCACTTGGACAAGA 58.849 47.619 18.15 0.00 40.79 3.02
577 621 2.045561 TTTCGCCACTTGGACAAGAA 57.954 45.000 18.15 0.00 40.79 2.52
578 622 2.045561 TTCGCCACTTGGACAAGAAA 57.954 45.000 18.15 2.78 40.79 2.52
581 625 2.357637 TCGCCACTTGGACAAGAAAAAG 59.642 45.455 18.15 6.14 40.79 2.27
583 627 3.447742 GCCACTTGGACAAGAAAAAGTG 58.552 45.455 18.15 7.29 45.81 3.16
592 636 8.422973 TTGGACAAGAAAAAGTGATTTTGATG 57.577 30.769 0.00 0.00 41.27 3.07
593 637 6.479660 TGGACAAGAAAAAGTGATTTTGATGC 59.520 34.615 0.00 0.00 41.27 3.91
594 638 6.479660 GGACAAGAAAAAGTGATTTTGATGCA 59.520 34.615 0.00 0.00 41.27 3.96
601 645 8.586570 AAAAAGTGATTTTGATGCAAATACGA 57.413 26.923 0.00 0.00 39.73 3.43
602 646 7.801547 AAAGTGATTTTGATGCAAATACGAG 57.198 32.000 0.00 0.00 33.19 4.18
603 647 6.741992 AGTGATTTTGATGCAAATACGAGA 57.258 33.333 0.00 0.00 33.19 4.04
604 648 6.546395 AGTGATTTTGATGCAAATACGAGAC 58.454 36.000 0.00 0.00 33.19 3.36
639 694 5.285370 CAGTTTGATTTCATCATGAACAGCG 59.715 40.000 0.00 0.00 39.39 5.18
640 695 3.409851 TGATTTCATCATGAACAGCGC 57.590 42.857 0.00 0.00 35.89 5.92
652 707 0.869880 AACAGCGCGGCAAACTTTTC 60.870 50.000 8.83 0.00 0.00 2.29
658 713 2.008697 CGGCAAACTTTTCGCCACG 61.009 57.895 12.59 0.00 46.60 4.94
664 719 3.035942 CAAACTTTTCGCCACGAAGAAG 58.964 45.455 16.04 16.04 46.43 2.85
667 722 2.544267 ACTTTTCGCCACGAAGAAGAAG 59.456 45.455 20.66 15.59 46.43 2.85
668 723 0.865769 TTTCGCCACGAAGAAGAAGC 59.134 50.000 2.44 0.00 46.43 3.86
683 738 6.721704 AGAAGAAGCAAGAGGAAATGTTTT 57.278 33.333 0.00 0.00 0.00 2.43
684 739 6.743110 AGAAGAAGCAAGAGGAAATGTTTTC 58.257 36.000 0.00 0.00 0.00 2.29
685 740 6.548993 AGAAGAAGCAAGAGGAAATGTTTTCT 59.451 34.615 0.52 0.00 0.00 2.52
687 742 7.117285 AGAAGCAAGAGGAAATGTTTTCTTT 57.883 32.000 0.52 0.00 0.00 2.52
688 743 7.205992 AGAAGCAAGAGGAAATGTTTTCTTTC 58.794 34.615 0.52 0.00 32.92 2.62
689 744 5.523369 AGCAAGAGGAAATGTTTTCTTTCG 58.477 37.500 0.52 0.00 34.19 3.46
690 745 4.148871 GCAAGAGGAAATGTTTTCTTTCGC 59.851 41.667 0.52 0.00 34.19 4.70
693 748 5.901552 AGAGGAAATGTTTTCTTTCGCAAA 58.098 33.333 0.52 0.00 34.19 3.68
694 749 6.337356 AGAGGAAATGTTTTCTTTCGCAAAA 58.663 32.000 0.52 0.00 34.19 2.44
695 750 6.986231 AGAGGAAATGTTTTCTTTCGCAAAAT 59.014 30.769 0.52 0.00 34.19 1.82
696 751 7.495606 AGAGGAAATGTTTTCTTTCGCAAAATT 59.504 29.630 0.52 0.00 34.19 1.82
697 752 7.984391 AGGAAATGTTTTCTTTCGCAAAATTT 58.016 26.923 0.52 0.00 34.19 1.82
698 753 9.103861 AGGAAATGTTTTCTTTCGCAAAATTTA 57.896 25.926 0.00 0.00 34.19 1.40
699 754 9.877137 GGAAATGTTTTCTTTCGCAAAATTTAT 57.123 25.926 0.00 0.00 34.19 1.40
713 768 6.983474 CAAAATTTATTTTGCCCTACCTGG 57.017 37.500 13.25 0.00 46.66 4.45
719 774 2.286365 TTTGCCCTACCTGGTTCTTG 57.714 50.000 3.84 0.00 0.00 3.02
722 777 1.078426 CCCTACCTGGTTCTTGCCG 60.078 63.158 3.84 0.00 0.00 5.69
733 788 1.533731 GTTCTTGCCGAACCGAAATGA 59.466 47.619 5.02 0.00 45.00 2.57
740 795 1.328680 CCGAACCGAAATGAGCATGAG 59.671 52.381 0.00 0.00 0.00 2.90
745 800 4.425577 ACCGAAATGAGCATGAGAAAAC 57.574 40.909 0.00 0.00 0.00 2.43
746 801 3.820467 ACCGAAATGAGCATGAGAAAACA 59.180 39.130 0.00 0.00 0.00 2.83
747 802 4.161333 CCGAAATGAGCATGAGAAAACAC 58.839 43.478 0.00 0.00 0.00 3.32
748 803 4.083110 CCGAAATGAGCATGAGAAAACACT 60.083 41.667 0.00 0.00 0.00 3.55
749 804 5.455392 CGAAATGAGCATGAGAAAACACTT 58.545 37.500 0.00 0.00 0.00 3.16
752 807 7.473027 AAATGAGCATGAGAAAACACTTTTG 57.527 32.000 0.00 0.00 31.94 2.44
753 808 5.581126 TGAGCATGAGAAAACACTTTTGT 57.419 34.783 0.00 0.00 37.67 2.83
770 825 8.769891 ACACTTTTGTTTTAAAAAGGTTGTCTG 58.230 29.630 1.31 4.81 46.74 3.51
777 832 5.744666 TTAAAAAGGTTGTCTGAAGGTCG 57.255 39.130 0.00 0.00 0.00 4.79
785 840 3.485463 TGTCTGAAGGTCGGTGAATTT 57.515 42.857 0.00 0.00 0.00 1.82
802 857 2.692709 TTTGGCAAAAGATCCAGGGA 57.307 45.000 10.83 0.00 33.32 4.20
804 859 2.692709 TGGCAAAAGATCCAGGGAAA 57.307 45.000 0.00 0.00 0.00 3.13
832 889 8.512956 GTTTACTGTACTATCTGTTCTGTCTCA 58.487 37.037 0.00 0.00 32.40 3.27
843 900 1.649321 TCTGTCTCATGCCCTGAAGT 58.351 50.000 0.00 0.00 32.14 3.01
844 901 2.820178 TCTGTCTCATGCCCTGAAGTA 58.180 47.619 0.00 0.00 32.14 2.24
845 902 2.762887 TCTGTCTCATGCCCTGAAGTAG 59.237 50.000 0.00 0.00 32.14 2.57
846 903 2.499289 CTGTCTCATGCCCTGAAGTAGT 59.501 50.000 0.00 0.00 32.14 2.73
847 904 3.701542 CTGTCTCATGCCCTGAAGTAGTA 59.298 47.826 0.00 0.00 32.14 1.82
848 905 3.701542 TGTCTCATGCCCTGAAGTAGTAG 59.298 47.826 0.00 0.00 32.14 2.57
849 906 3.702045 GTCTCATGCCCTGAAGTAGTAGT 59.298 47.826 0.00 0.00 32.14 2.73
850 907 4.888239 GTCTCATGCCCTGAAGTAGTAGTA 59.112 45.833 0.00 0.00 32.14 1.82
851 908 5.009210 GTCTCATGCCCTGAAGTAGTAGTAG 59.991 48.000 0.00 0.00 32.14 2.57
852 909 4.868268 TCATGCCCTGAAGTAGTAGTAGT 58.132 43.478 0.00 0.00 0.00 2.73
874 934 3.931578 AGTAGTAGTAACCTGACGACGT 58.068 45.455 0.00 0.00 31.01 4.34
892 952 4.683334 GAGCCAACCAACGCGCAC 62.683 66.667 5.73 0.00 0.00 5.34
964 1032 0.460284 ACAGACGCCATCGATCAACC 60.460 55.000 0.00 0.00 39.41 3.77
970 1038 1.493950 GCCATCGATCAACCGCAGAG 61.494 60.000 0.00 0.00 0.00 3.35
973 1041 0.387202 ATCGATCAACCGCAGAGAGG 59.613 55.000 0.00 0.00 0.00 3.69
988 1056 2.655407 AGAGAGGGAGGGAGTTACTTGA 59.345 50.000 0.00 0.00 0.00 3.02
996 1065 3.432378 AGGGAGTTACTTGACGACAGAT 58.568 45.455 0.00 0.00 0.00 2.90
1084 1153 3.745546 CCTTCAGGGCCATCCTCA 58.254 61.111 6.18 0.00 46.12 3.86
1221 1290 0.809385 TCTTCTTCGCCTACCTCGTG 59.191 55.000 0.00 0.00 0.00 4.35
1227 1296 2.094659 CGCCTACCTCGTGTGCAAG 61.095 63.158 0.00 0.00 0.00 4.01
1230 1299 1.005037 CTACCTCGTGTGCAAGGCA 60.005 57.895 1.89 0.00 36.01 4.75
1314 1383 3.257561 CACGCGCTGAAGGGATCG 61.258 66.667 5.73 0.00 0.00 3.69
1411 1495 3.082619 ACGGGAGTTGGAGATTGGA 57.917 52.632 0.00 0.00 43.33 3.53
1549 1642 4.218578 CGCTGCGCCTGAGGAGAT 62.219 66.667 9.88 0.00 0.00 2.75
1552 1645 1.519246 CTGCGCCTGAGGAGATTCA 59.481 57.895 6.36 0.00 0.00 2.57
1553 1646 0.809241 CTGCGCCTGAGGAGATTCAC 60.809 60.000 6.36 0.00 0.00 3.18
1696 1795 4.022068 TCCGTACATAAACCGTCTTCAACT 60.022 41.667 0.00 0.00 0.00 3.16
1762 1917 5.300752 AGTAGTGTGAGGAGAAATGTGTTG 58.699 41.667 0.00 0.00 0.00 3.33
1774 1929 6.238897 GGAGAAATGTGTTGGATGTGTTGTAA 60.239 38.462 0.00 0.00 0.00 2.41
1785 1940 5.888724 TGGATGTGTTGTAAAAACTCCTTCA 59.111 36.000 0.00 0.00 34.29 3.02
1802 1957 1.133809 TCAAACCTGAGGGGGAGGTG 61.134 60.000 2.38 0.00 43.42 4.00
1871 2026 4.999950 CGAAGCCTAGCCAATAAAGATCAT 59.000 41.667 0.00 0.00 0.00 2.45
1908 2063 9.529325 TTTAATCAGTATCTTGATAACGGACTG 57.471 33.333 0.00 0.00 36.81 3.51
1909 2064 6.716934 ATCAGTATCTTGATAACGGACTGT 57.283 37.500 9.11 0.00 36.08 3.55
1910 2065 6.525578 TCAGTATCTTGATAACGGACTGTT 57.474 37.500 4.78 4.78 44.78 3.16
1911 2066 6.561614 TCAGTATCTTGATAACGGACTGTTC 58.438 40.000 2.07 0.00 42.09 3.18
1912 2067 5.455849 CAGTATCTTGATAACGGACTGTTCG 59.544 44.000 7.00 7.00 42.09 3.95
1913 2068 3.226346 TCTTGATAACGGACTGTTCGG 57.774 47.619 13.81 0.00 42.09 4.30
1914 2069 2.559668 TCTTGATAACGGACTGTTCGGT 59.440 45.455 13.81 9.15 42.09 4.69
1915 2070 3.758023 TCTTGATAACGGACTGTTCGGTA 59.242 43.478 8.95 8.95 42.09 4.02
1916 2071 3.770263 TGATAACGGACTGTTCGGTAG 57.230 47.619 12.34 0.00 42.09 3.18
1917 2072 3.084039 TGATAACGGACTGTTCGGTAGT 58.916 45.455 12.34 0.72 42.09 2.73
1918 2073 3.127548 TGATAACGGACTGTTCGGTAGTC 59.872 47.826 12.34 9.90 42.09 2.59
1919 2074 0.239347 AACGGACTGTTCGGTAGTCG 59.761 55.000 13.81 0.00 44.24 4.18
1921 2076 1.582968 GGACTGTTCGGTAGTCGCA 59.417 57.895 0.00 0.00 44.24 5.10
1922 2077 0.172803 GGACTGTTCGGTAGTCGCAT 59.827 55.000 0.00 0.00 44.24 4.73
1923 2078 1.546834 GACTGTTCGGTAGTCGCATC 58.453 55.000 0.00 0.00 35.68 3.91
1924 2079 1.132643 GACTGTTCGGTAGTCGCATCT 59.867 52.381 0.00 0.00 35.68 2.90
1925 2080 1.135373 ACTGTTCGGTAGTCGCATCTG 60.135 52.381 0.00 0.00 39.05 2.90
1926 2081 0.172578 TGTTCGGTAGTCGCATCTGG 59.827 55.000 0.00 0.00 39.05 3.86
1928 2083 1.320344 TTCGGTAGTCGCATCTGGCT 61.320 55.000 0.00 0.00 41.67 4.75
1929 2084 1.589993 CGGTAGTCGCATCTGGCTG 60.590 63.158 0.00 0.00 41.67 4.85
1934 2103 2.125391 TCGCATCTGGCTGTGCTC 60.125 61.111 13.65 0.00 41.67 4.26
1937 2106 1.453379 GCATCTGGCTGTGCTCCAT 60.453 57.895 10.17 0.00 40.25 3.41
1942 2111 1.934220 CTGGCTGTGCTCCATGCTTG 61.934 60.000 0.00 0.00 43.37 4.01
1945 2114 3.047718 CTGTGCTCCATGCTTGGCG 62.048 63.158 13.75 8.98 43.29 5.69
1946 2115 2.747460 GTGCTCCATGCTTGGCGA 60.747 61.111 13.75 0.00 43.29 5.54
1948 2117 2.042259 TGCTCCATGCTTGGCGAAG 61.042 57.895 13.75 3.77 43.29 3.79
1955 2124 1.589716 ATGCTTGGCGAAGAAGGCAC 61.590 55.000 13.20 0.00 46.56 5.01
1956 2125 2.982744 GCTTGGCGAAGAAGGCACC 61.983 63.158 13.20 0.00 46.56 5.01
1966 2135 0.962356 AGAAGGCACCAGCAAATCGG 60.962 55.000 0.00 0.00 44.61 4.18
1974 2143 1.003580 ACCAGCAAATCGGTGAGATGT 59.996 47.619 0.00 0.00 46.47 3.06
1975 2144 1.667724 CCAGCAAATCGGTGAGATGTC 59.332 52.381 0.00 0.00 46.47 3.06
1979 2152 2.352960 GCAAATCGGTGAGATGTCTTCC 59.647 50.000 0.00 0.00 40.02 3.46
1989 2162 5.453480 GGTGAGATGTCTTCCCACCTTATAC 60.453 48.000 11.01 0.00 42.82 1.47
1994 2167 2.112998 TCTTCCCACCTTATACCACCG 58.887 52.381 0.00 0.00 0.00 4.94
1998 2171 0.472471 CCACCTTATACCACCGCCAT 59.528 55.000 0.00 0.00 0.00 4.40
2000 2173 0.472471 ACCTTATACCACCGCCATGG 59.528 55.000 7.63 7.63 46.10 3.66
2010 2183 1.529948 CCGCCATGGCCATCAAGAT 60.530 57.895 30.79 0.00 37.98 2.40
2011 2184 0.250858 CCGCCATGGCCATCAAGATA 60.251 55.000 30.79 0.00 37.98 1.98
2014 2187 1.527034 CCATGGCCATCAAGATACCG 58.473 55.000 17.61 0.44 0.00 4.02
2017 2190 0.546122 TGGCCATCAAGATACCGCTT 59.454 50.000 0.00 0.00 0.00 4.68
2024 2197 4.926238 CCATCAAGATACCGCTTATGTCTC 59.074 45.833 0.00 0.00 0.00 3.36
2025 2198 5.509670 CCATCAAGATACCGCTTATGTCTCA 60.510 44.000 0.00 0.00 0.00 3.27
2026 2199 4.933330 TCAAGATACCGCTTATGTCTCAC 58.067 43.478 0.00 0.00 0.00 3.51
2027 2200 4.051922 CAAGATACCGCTTATGTCTCACC 58.948 47.826 0.00 0.00 0.00 4.02
2028 2201 3.567397 AGATACCGCTTATGTCTCACCT 58.433 45.455 0.00 0.00 0.00 4.00
2029 2202 4.726583 AGATACCGCTTATGTCTCACCTA 58.273 43.478 0.00 0.00 0.00 3.08
2030 2203 4.519730 AGATACCGCTTATGTCTCACCTAC 59.480 45.833 0.00 0.00 0.00 3.18
2031 2204 2.453521 ACCGCTTATGTCTCACCTACA 58.546 47.619 0.00 0.00 0.00 2.74
2032 2205 2.829720 ACCGCTTATGTCTCACCTACAA 59.170 45.455 0.00 0.00 0.00 2.41
2033 2206 3.451178 ACCGCTTATGTCTCACCTACAAT 59.549 43.478 0.00 0.00 0.00 2.71
2034 2207 4.081087 ACCGCTTATGTCTCACCTACAATT 60.081 41.667 0.00 0.00 0.00 2.32
2035 2208 4.508124 CCGCTTATGTCTCACCTACAATTC 59.492 45.833 0.00 0.00 0.00 2.17
2036 2209 5.109210 CGCTTATGTCTCACCTACAATTCA 58.891 41.667 0.00 0.00 0.00 2.57
2037 2210 5.233050 CGCTTATGTCTCACCTACAATTCAG 59.767 44.000 0.00 0.00 0.00 3.02
2038 2211 5.525378 GCTTATGTCTCACCTACAATTCAGG 59.475 44.000 1.69 1.69 39.25 3.86
2039 2212 3.981071 TGTCTCACCTACAATTCAGGG 57.019 47.619 7.40 0.00 37.51 4.45
2040 2213 2.027192 TGTCTCACCTACAATTCAGGGC 60.027 50.000 7.40 0.00 37.51 5.19
2041 2214 2.027192 GTCTCACCTACAATTCAGGGCA 60.027 50.000 7.40 0.00 37.51 5.36
2042 2215 2.027192 TCTCACCTACAATTCAGGGCAC 60.027 50.000 7.40 0.00 37.51 5.01
2043 2216 1.086696 CACCTACAATTCAGGGCACG 58.913 55.000 7.40 0.00 37.51 5.34
2044 2217 0.981183 ACCTACAATTCAGGGCACGA 59.019 50.000 7.40 0.00 37.51 4.35
2045 2218 1.066143 ACCTACAATTCAGGGCACGAG 60.066 52.381 7.40 0.00 37.51 4.18
2046 2219 1.066143 CCTACAATTCAGGGCACGAGT 60.066 52.381 0.00 0.00 0.00 4.18
2047 2220 2.271800 CTACAATTCAGGGCACGAGTC 58.728 52.381 0.00 0.00 0.00 3.36
2048 2221 0.396435 ACAATTCAGGGCACGAGTCA 59.604 50.000 0.00 0.00 0.00 3.41
2049 2222 0.798776 CAATTCAGGGCACGAGTCAC 59.201 55.000 0.00 0.00 0.00 3.67
2050 2223 0.687354 AATTCAGGGCACGAGTCACT 59.313 50.000 0.00 0.00 0.00 3.41
2051 2224 0.036952 ATTCAGGGCACGAGTCACTG 60.037 55.000 0.00 0.00 0.00 3.66
2052 2225 1.112916 TTCAGGGCACGAGTCACTGA 61.113 55.000 5.44 5.44 36.49 3.41
2053 2226 1.112916 TCAGGGCACGAGTCACTGAA 61.113 55.000 6.73 0.00 35.45 3.02
2054 2227 0.036952 CAGGGCACGAGTCACTGAAT 60.037 55.000 0.00 0.00 0.00 2.57
2055 2228 0.687354 AGGGCACGAGTCACTGAATT 59.313 50.000 0.00 0.00 0.00 2.17
2056 2229 0.798776 GGGCACGAGTCACTGAATTG 59.201 55.000 0.00 0.00 0.00 2.32
2057 2230 1.512926 GGCACGAGTCACTGAATTGT 58.487 50.000 0.00 0.00 0.00 2.71
2058 2231 2.611971 GGGCACGAGTCACTGAATTGTA 60.612 50.000 0.00 0.00 0.00 2.41
2059 2232 2.668457 GGCACGAGTCACTGAATTGTAG 59.332 50.000 0.00 0.00 0.00 2.74
2060 2233 2.092838 GCACGAGTCACTGAATTGTAGC 59.907 50.000 0.00 3.17 0.00 3.58
2061 2234 3.317150 CACGAGTCACTGAATTGTAGCA 58.683 45.455 0.00 0.00 0.00 3.49
2062 2235 3.928992 CACGAGTCACTGAATTGTAGCAT 59.071 43.478 0.00 0.00 0.00 3.79
2063 2236 4.032217 CACGAGTCACTGAATTGTAGCATC 59.968 45.833 0.00 0.00 0.00 3.91
2064 2237 3.553511 CGAGTCACTGAATTGTAGCATCC 59.446 47.826 0.00 0.00 0.00 3.51
2065 2238 4.507710 GAGTCACTGAATTGTAGCATCCA 58.492 43.478 0.00 0.00 0.00 3.41
2066 2239 4.256920 AGTCACTGAATTGTAGCATCCAC 58.743 43.478 0.00 0.00 0.00 4.02
2067 2240 4.002982 GTCACTGAATTGTAGCATCCACA 58.997 43.478 0.00 0.00 0.00 4.17
2068 2241 4.455533 GTCACTGAATTGTAGCATCCACAA 59.544 41.667 0.00 0.00 40.01 3.33
2069 2242 5.124457 GTCACTGAATTGTAGCATCCACAAT 59.876 40.000 0.00 0.00 46.05 2.71
2070 2243 6.316140 GTCACTGAATTGTAGCATCCACAATA 59.684 38.462 1.46 0.00 43.94 1.90
2071 2244 7.012704 GTCACTGAATTGTAGCATCCACAATAT 59.987 37.037 1.46 0.00 43.94 1.28
2072 2245 7.012610 TCACTGAATTGTAGCATCCACAATATG 59.987 37.037 1.46 0.29 43.94 1.78
2073 2246 6.075762 TGAATTGTAGCATCCACAATATGC 57.924 37.500 1.46 0.00 43.94 3.14
2077 2250 3.879912 GCATCCACAATATGCTGCC 57.120 52.632 0.00 0.00 45.05 4.85
2078 2251 0.316204 GCATCCACAATATGCTGCCC 59.684 55.000 0.00 0.00 45.05 5.36
2079 2252 1.991121 CATCCACAATATGCTGCCCT 58.009 50.000 0.00 0.00 0.00 5.19
2080 2253 1.611977 CATCCACAATATGCTGCCCTG 59.388 52.381 0.00 0.00 0.00 4.45
2081 2254 0.106569 TCCACAATATGCTGCCCTGG 60.107 55.000 0.00 0.00 0.00 4.45
2082 2255 0.396139 CCACAATATGCTGCCCTGGT 60.396 55.000 0.00 0.00 0.00 4.00
2083 2256 0.742505 CACAATATGCTGCCCTGGTG 59.257 55.000 0.00 0.00 0.00 4.17
2084 2257 1.039233 ACAATATGCTGCCCTGGTGC 61.039 55.000 0.00 0.00 0.00 5.01
2085 2258 0.754217 CAATATGCTGCCCTGGTGCT 60.754 55.000 0.00 0.00 0.00 4.40
2086 2259 0.846015 AATATGCTGCCCTGGTGCTA 59.154 50.000 0.00 0.00 0.00 3.49
2087 2260 0.399454 ATATGCTGCCCTGGTGCTAG 59.601 55.000 0.00 0.00 0.00 3.42
2088 2261 0.690744 TATGCTGCCCTGGTGCTAGA 60.691 55.000 0.00 0.00 0.00 2.43
2089 2262 1.980784 ATGCTGCCCTGGTGCTAGAG 61.981 60.000 0.00 0.37 0.00 2.43
2090 2263 2.906458 CTGCCCTGGTGCTAGAGG 59.094 66.667 0.00 0.00 0.00 3.69
2091 2264 3.397613 CTGCCCTGGTGCTAGAGGC 62.398 68.421 0.00 7.66 44.13 4.70
2092 2265 4.537433 GCCCTGGTGCTAGAGGCG 62.537 72.222 0.00 0.00 45.43 5.52
2093 2266 2.759973 CCCTGGTGCTAGAGGCGA 60.760 66.667 0.00 0.00 45.43 5.54
2097 2270 4.874977 GGTGCTAGAGGCGACCGC 62.875 72.222 5.75 5.75 45.43 5.68
2126 2299 3.451894 GGCGCCATGAACCCCTTG 61.452 66.667 24.80 0.00 0.00 3.61
2127 2300 2.676471 GCGCCATGAACCCCTTGT 60.676 61.111 0.00 0.00 0.00 3.16
2128 2301 2.993471 GCGCCATGAACCCCTTGTG 61.993 63.158 0.00 0.00 0.00 3.33
2129 2302 1.603455 CGCCATGAACCCCTTGTGT 60.603 57.895 0.00 0.00 0.00 3.72
2130 2303 0.322098 CGCCATGAACCCCTTGTGTA 60.322 55.000 0.00 0.00 0.00 2.90
2131 2304 1.884497 CGCCATGAACCCCTTGTGTAA 60.884 52.381 0.00 0.00 0.00 2.41
2132 2305 2.243810 GCCATGAACCCCTTGTGTAAA 58.756 47.619 0.00 0.00 0.00 2.01
2133 2306 2.831526 GCCATGAACCCCTTGTGTAAAT 59.168 45.455 0.00 0.00 0.00 1.40
2134 2307 4.020543 GCCATGAACCCCTTGTGTAAATA 58.979 43.478 0.00 0.00 0.00 1.40
2135 2308 4.649218 GCCATGAACCCCTTGTGTAAATAT 59.351 41.667 0.00 0.00 0.00 1.28
2136 2309 5.221244 GCCATGAACCCCTTGTGTAAATATC 60.221 44.000 0.00 0.00 0.00 1.63
2137 2310 5.890985 CCATGAACCCCTTGTGTAAATATCA 59.109 40.000 0.00 0.00 0.00 2.15
2138 2311 6.039717 CCATGAACCCCTTGTGTAAATATCAG 59.960 42.308 0.00 0.00 0.00 2.90
2139 2312 4.947388 TGAACCCCTTGTGTAAATATCAGC 59.053 41.667 0.00 0.00 0.00 4.26
2140 2313 4.584638 ACCCCTTGTGTAAATATCAGCA 57.415 40.909 0.00 0.00 0.00 4.41
2141 2314 4.526970 ACCCCTTGTGTAAATATCAGCAG 58.473 43.478 0.00 0.00 0.00 4.24
2142 2315 4.227300 ACCCCTTGTGTAAATATCAGCAGA 59.773 41.667 0.00 0.00 0.00 4.26
2143 2316 5.192927 CCCCTTGTGTAAATATCAGCAGAA 58.807 41.667 0.00 0.00 0.00 3.02
2144 2317 5.066505 CCCCTTGTGTAAATATCAGCAGAAC 59.933 44.000 0.00 0.00 0.00 3.01
2145 2318 5.647658 CCCTTGTGTAAATATCAGCAGAACA 59.352 40.000 0.00 0.00 0.00 3.18
2146 2319 6.183360 CCCTTGTGTAAATATCAGCAGAACAG 60.183 42.308 0.00 0.00 0.00 3.16
2147 2320 6.595326 CCTTGTGTAAATATCAGCAGAACAGA 59.405 38.462 0.00 0.00 0.00 3.41
2148 2321 7.281774 CCTTGTGTAAATATCAGCAGAACAGAT 59.718 37.037 0.00 0.00 0.00 2.90
2149 2322 7.543947 TGTGTAAATATCAGCAGAACAGATG 57.456 36.000 0.00 0.00 0.00 2.90
2150 2323 6.037500 TGTGTAAATATCAGCAGAACAGATGC 59.962 38.462 0.00 0.00 44.18 3.91
2156 2329 3.920144 GCAGAACAGATGCTGATGC 57.080 52.632 0.82 5.14 40.59 3.91
2157 2330 1.380524 GCAGAACAGATGCTGATGCT 58.619 50.000 0.82 0.00 40.59 3.79
2158 2331 1.064208 GCAGAACAGATGCTGATGCTG 59.936 52.381 0.82 6.53 40.59 4.41
2159 2332 2.629051 CAGAACAGATGCTGATGCTGA 58.371 47.619 0.82 0.00 40.48 4.26
2160 2333 3.206964 CAGAACAGATGCTGATGCTGAT 58.793 45.455 0.82 0.00 40.48 2.90
2161 2334 3.002759 CAGAACAGATGCTGATGCTGATG 59.997 47.826 0.82 0.00 40.48 3.07
2162 2335 1.309950 ACAGATGCTGATGCTGATGC 58.690 50.000 0.82 0.00 40.48 3.91
2163 2336 1.134068 ACAGATGCTGATGCTGATGCT 60.134 47.619 0.82 0.00 40.48 3.79
2164 2337 1.265365 CAGATGCTGATGCTGATGCTG 59.735 52.381 0.00 0.00 40.48 4.41
2165 2338 1.141053 AGATGCTGATGCTGATGCTGA 59.859 47.619 0.00 0.00 40.48 4.26
2166 2339 2.155279 GATGCTGATGCTGATGCTGAT 58.845 47.619 0.00 0.00 40.48 2.90
2167 2340 2.922740 TGCTGATGCTGATGCTGATA 57.077 45.000 0.00 0.00 40.48 2.15
2168 2341 2.490991 TGCTGATGCTGATGCTGATAC 58.509 47.619 0.00 0.00 40.48 2.24
2169 2342 2.104281 TGCTGATGCTGATGCTGATACT 59.896 45.455 0.00 0.00 40.48 2.12
2170 2343 3.139850 GCTGATGCTGATGCTGATACTT 58.860 45.455 0.00 0.00 40.48 2.24
2171 2344 3.564644 GCTGATGCTGATGCTGATACTTT 59.435 43.478 0.00 0.00 40.48 2.66
2172 2345 4.036498 GCTGATGCTGATGCTGATACTTTT 59.964 41.667 0.00 0.00 40.48 2.27
2173 2346 5.237996 GCTGATGCTGATGCTGATACTTTTA 59.762 40.000 0.00 0.00 40.48 1.52
2174 2347 6.566187 GCTGATGCTGATGCTGATACTTTTAG 60.566 42.308 0.00 0.00 40.48 1.85
2175 2348 6.585416 TGATGCTGATGCTGATACTTTTAGA 58.415 36.000 0.00 0.00 40.48 2.10
2176 2349 7.049754 TGATGCTGATGCTGATACTTTTAGAA 58.950 34.615 0.00 0.00 40.48 2.10
2177 2350 7.553760 TGATGCTGATGCTGATACTTTTAGAAA 59.446 33.333 0.00 0.00 40.48 2.52
2178 2351 7.686438 TGCTGATGCTGATACTTTTAGAAAA 57.314 32.000 0.00 0.00 40.48 2.29
2179 2352 7.755591 TGCTGATGCTGATACTTTTAGAAAAG 58.244 34.615 12.20 12.20 43.98 2.27
2180 2353 7.148188 TGCTGATGCTGATACTTTTAGAAAAGG 60.148 37.037 16.89 0.00 43.39 3.11
2181 2354 7.148171 GCTGATGCTGATACTTTTAGAAAAGGT 60.148 37.037 16.89 7.04 41.65 3.50
2205 2378 3.505480 TTGGTACCACCGGTTTGTAAT 57.495 42.857 16.04 0.00 42.58 1.89
2207 2380 4.205065 TGGTACCACCGGTTTGTAATAG 57.795 45.455 11.60 0.00 42.58 1.73
2212 2385 5.440207 ACCACCGGTTTGTAATAGGTTAT 57.560 39.130 2.97 0.00 32.04 1.89
2213 2386 6.558488 ACCACCGGTTTGTAATAGGTTATA 57.442 37.500 2.97 0.00 32.04 0.98
2215 2388 5.463061 CCACCGGTTTGTAATAGGTTATACG 59.537 44.000 2.97 0.00 32.04 3.06
2232 2405 6.128742 GGTTATACGCGTAGGACCAAATATTG 60.129 42.308 32.31 0.00 0.00 1.90
2244 2425 7.945134 AGGACCAAATATTGATGCAGTTTATC 58.055 34.615 0.00 0.00 0.00 1.75
2245 2426 7.560991 AGGACCAAATATTGATGCAGTTTATCA 59.439 33.333 0.00 0.00 33.00 2.15
2246 2427 7.649306 GGACCAAATATTGATGCAGTTTATCAC 59.351 37.037 0.00 0.00 34.50 3.06
2248 2429 9.407380 ACCAAATATTGATGCAGTTTATCACTA 57.593 29.630 0.00 0.00 34.50 2.74
2256 2437 9.665719 TTGATGCAGTTTATCACTAAAGTATGA 57.334 29.630 0.00 0.00 34.50 2.15
2257 2438 9.836864 TGATGCAGTTTATCACTAAAGTATGAT 57.163 29.630 0.00 0.00 38.99 2.45
2329 2510 9.202545 GCTCAAAAATGAATATTCGAAAATTGC 57.797 29.630 10.80 5.65 0.00 3.56
2358 2539 9.498176 ACATTTTGTAGTATCTTCTAACGGTTT 57.502 29.630 0.00 0.00 0.00 3.27
2359 2540 9.968743 CATTTTGTAGTATCTTCTAACGGTTTC 57.031 33.333 0.00 0.00 0.00 2.78
2360 2541 8.538409 TTTTGTAGTATCTTCTAACGGTTTCC 57.462 34.615 0.00 0.00 0.00 3.13
2367 2548 5.334724 TCTTCTAACGGTTTCCTATGTCC 57.665 43.478 0.00 0.00 0.00 4.02
2369 2550 4.996788 TCTAACGGTTTCCTATGTCCTC 57.003 45.455 0.00 0.00 0.00 3.71
2405 2586 4.569180 ACAAGGCTGCCGCTGTGT 62.569 61.111 23.16 17.81 36.09 3.72
2408 2589 3.901797 AAGGCTGCCGCTGTGTACC 62.902 63.158 13.96 0.00 36.09 3.34
2415 2596 1.006571 CCGCTGTGTACCAAGTCGT 60.007 57.895 0.00 0.00 0.00 4.34
2428 2609 7.543172 GTGTACCAAGTCGTTCAATACTTATGA 59.457 37.037 0.00 0.00 34.23 2.15
2430 2611 9.095065 GTACCAAGTCGTTCAATACTTATGATT 57.905 33.333 0.00 0.00 34.23 2.57
2434 2615 9.825972 CAAGTCGTTCAATACTTATGATTTGTT 57.174 29.630 0.00 0.00 34.23 2.83
2437 2618 8.166706 GTCGTTCAATACTTATGATTTGTTCGT 58.833 33.333 0.00 0.00 0.00 3.85
2438 2619 8.166066 TCGTTCAATACTTATGATTTGTTCGTG 58.834 33.333 0.00 0.00 0.00 4.35
2439 2620 7.425309 CGTTCAATACTTATGATTTGTTCGTGG 59.575 37.037 0.00 0.00 0.00 4.94
2440 2621 6.781138 TCAATACTTATGATTTGTTCGTGGC 58.219 36.000 0.00 0.00 0.00 5.01
2441 2622 6.372937 TCAATACTTATGATTTGTTCGTGGCA 59.627 34.615 0.00 0.00 0.00 4.92
2442 2623 6.942532 ATACTTATGATTTGTTCGTGGCAT 57.057 33.333 0.00 0.00 0.00 4.40
2443 2624 8.341903 CAATACTTATGATTTGTTCGTGGCATA 58.658 33.333 0.00 0.00 0.00 3.14
2444 2625 6.119144 ACTTATGATTTGTTCGTGGCATAC 57.881 37.500 0.00 0.00 0.00 2.39
2462 2643 1.616159 ACCTGCGTTTGGCTGTAATT 58.384 45.000 0.00 0.00 44.05 1.40
2523 2709 4.634199 CAATTGCCAAAACCTGAGTTGAT 58.366 39.130 0.00 0.00 35.97 2.57
2548 2734 4.826556 TGTTTATACCTTGCCAAAATGCC 58.173 39.130 0.00 0.00 0.00 4.40
2567 2754 0.179001 CGAAGTTGGGTGGGAGGTTT 60.179 55.000 0.00 0.00 0.00 3.27
2573 2760 1.908299 GGGTGGGAGGTTTTGCTGG 60.908 63.158 0.00 0.00 0.00 4.85
2583 2770 3.030291 AGGTTTTGCTGGAAACATGACA 58.970 40.909 0.00 0.00 40.44 3.58
2618 2806 5.993106 ATAAGCAAGGCGAGTATTTTCTC 57.007 39.130 0.00 0.00 0.00 2.87
2623 2811 4.333926 GCAAGGCGAGTATTTTCTCAAGAT 59.666 41.667 0.00 0.00 34.46 2.40
2624 2812 5.728898 GCAAGGCGAGTATTTTCTCAAGATG 60.729 44.000 0.00 0.00 34.46 2.90
2626 2814 3.561725 GGCGAGTATTTTCTCAAGATGGG 59.438 47.826 0.00 0.00 34.46 4.00
2672 2862 9.740239 TTGATCAAACAGTAATAGATACCGTAC 57.260 33.333 5.45 0.00 34.89 3.67
2673 2863 8.905850 TGATCAAACAGTAATAGATACCGTACA 58.094 33.333 0.00 0.00 34.89 2.90
2674 2864 9.909644 GATCAAACAGTAATAGATACCGTACAT 57.090 33.333 0.00 0.00 34.89 2.29
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
7 8 1.148157 CGGTTAGCGACTGCATCCAG 61.148 60.000 0.00 0.00 46.23 3.86
11 12 0.815734 ACTACGGTTAGCGACTGCAT 59.184 50.000 11.70 0.00 46.23 3.96
16 17 4.542662 TCAAGATACTACGGTTAGCGAC 57.457 45.455 11.70 0.00 0.00 5.19
22 23 5.934402 ACTGGAATCAAGATACTACGGTT 57.066 39.130 0.00 0.00 0.00 4.44
72 73 7.307751 CCAAAGATAGAACAAGCTTAACGTTCA 60.308 37.037 22.82 13.23 41.17 3.18
89 90 5.887598 TCCATGATCCAACAACCAAAGATAG 59.112 40.000 0.00 0.00 0.00 2.08
149 186 2.350895 CCAATCCCAGTCCGCACA 59.649 61.111 0.00 0.00 0.00 4.57
165 202 4.966787 TTGCAACCACCGAGGGCC 62.967 66.667 0.00 0.00 43.89 5.80
197 234 2.013807 CAATGCCATACGACCACCG 58.986 57.895 0.00 0.00 45.44 4.94
198 235 1.727467 GCAATGCCATACGACCACC 59.273 57.895 0.00 0.00 0.00 4.61
242 279 1.135083 ACGAGCCAGTTACATTCTCCG 60.135 52.381 0.00 0.00 0.00 4.63
258 295 6.061231 AGACAAAAAGGAAAAGCTAACGAG 57.939 37.500 0.00 0.00 0.00 4.18
270 307 1.953686 CTTCCCGCAAGACAAAAAGGA 59.046 47.619 0.00 0.00 43.02 3.36
277 314 0.759959 TTACCACTTCCCGCAAGACA 59.240 50.000 0.00 0.00 43.02 3.41
278 315 1.886886 TTTACCACTTCCCGCAAGAC 58.113 50.000 0.00 0.00 43.02 3.01
280 317 2.432444 TCATTTACCACTTCCCGCAAG 58.568 47.619 0.00 0.00 38.21 4.01
290 327 7.384660 TCAAGTGCAAATTTCATCATTTACCAC 59.615 33.333 0.00 0.00 32.73 4.16
365 402 5.163088 ACAGTAAACAGTTCCCTGGATCTTT 60.163 40.000 13.82 0.00 43.36 2.52
392 429 3.369471 CCAGGGAACGACACAGAACATAT 60.369 47.826 0.00 0.00 0.00 1.78
395 432 0.105964 CCAGGGAACGACACAGAACA 59.894 55.000 0.00 0.00 0.00 3.18
400 437 2.099652 CTGCTCCAGGGAACGACACA 62.100 60.000 0.00 0.00 0.00 3.72
412 456 1.550524 CAGGTTACTAGTGCTGCTCCA 59.449 52.381 5.39 0.00 0.00 3.86
420 464 1.359848 CAAGCGCCAGGTTACTAGTG 58.640 55.000 2.29 0.00 36.15 2.74
422 466 1.421410 CGCAAGCGCCAGGTTACTAG 61.421 60.000 2.29 0.00 36.15 2.57
435 479 0.811281 ATTGGTTAGAAGCCGCAAGC 59.189 50.000 0.00 0.00 44.25 4.01
436 480 2.867429 CAATTGGTTAGAAGCCGCAAG 58.133 47.619 0.00 0.00 0.00 4.01
437 481 1.067915 GCAATTGGTTAGAAGCCGCAA 60.068 47.619 7.72 0.00 0.00 4.85
438 482 0.525761 GCAATTGGTTAGAAGCCGCA 59.474 50.000 7.72 0.00 0.00 5.69
439 483 0.811281 AGCAATTGGTTAGAAGCCGC 59.189 50.000 3.82 0.00 0.00 6.53
440 484 1.812571 ACAGCAATTGGTTAGAAGCCG 59.187 47.619 7.57 0.00 0.00 5.52
441 485 3.942130 AACAGCAATTGGTTAGAAGCC 57.058 42.857 7.57 0.00 0.00 4.35
442 486 5.126396 AGAAACAGCAATTGGTTAGAAGC 57.874 39.130 7.57 0.00 36.66 3.86
443 487 6.431234 AGGTAGAAACAGCAATTGGTTAGAAG 59.569 38.462 7.57 0.00 36.66 2.85
444 488 6.206634 CAGGTAGAAACAGCAATTGGTTAGAA 59.793 38.462 7.57 0.00 36.66 2.10
445 489 5.705441 CAGGTAGAAACAGCAATTGGTTAGA 59.295 40.000 7.57 0.00 36.66 2.10
446 490 5.473504 ACAGGTAGAAACAGCAATTGGTTAG 59.526 40.000 7.57 0.02 36.66 2.34
447 491 5.381757 ACAGGTAGAAACAGCAATTGGTTA 58.618 37.500 7.57 0.00 36.66 2.85
448 492 4.215109 ACAGGTAGAAACAGCAATTGGTT 58.785 39.130 7.57 0.54 40.13 3.67
449 493 3.832527 ACAGGTAGAAACAGCAATTGGT 58.167 40.909 3.82 3.82 0.00 3.67
450 494 4.853924 AACAGGTAGAAACAGCAATTGG 57.146 40.909 7.72 0.00 0.00 3.16
453 497 8.190784 GCAATAATAACAGGTAGAAACAGCAAT 58.809 33.333 0.00 0.00 0.00 3.56
454 498 7.393234 AGCAATAATAACAGGTAGAAACAGCAA 59.607 33.333 0.00 0.00 0.00 3.91
455 499 6.884295 AGCAATAATAACAGGTAGAAACAGCA 59.116 34.615 0.00 0.00 0.00 4.41
456 500 7.321745 AGCAATAATAACAGGTAGAAACAGC 57.678 36.000 0.00 0.00 0.00 4.40
457 501 9.601217 ACTAGCAATAATAACAGGTAGAAACAG 57.399 33.333 0.00 0.00 36.30 3.16
458 502 9.378551 CACTAGCAATAATAACAGGTAGAAACA 57.621 33.333 0.00 0.00 36.30 2.83
459 503 8.336080 GCACTAGCAATAATAACAGGTAGAAAC 58.664 37.037 0.00 0.00 41.58 2.78
460 504 8.265055 AGCACTAGCAATAATAACAGGTAGAAA 58.735 33.333 0.00 0.00 45.49 2.52
461 505 7.792032 AGCACTAGCAATAATAACAGGTAGAA 58.208 34.615 0.00 0.00 45.49 2.10
462 506 7.361457 AGCACTAGCAATAATAACAGGTAGA 57.639 36.000 0.00 0.00 45.49 2.59
463 507 8.338259 CAAAGCACTAGCAATAATAACAGGTAG 58.662 37.037 0.00 0.00 45.49 3.18
464 508 7.827236 ACAAAGCACTAGCAATAATAACAGGTA 59.173 33.333 0.00 0.00 45.49 3.08
465 509 6.659242 ACAAAGCACTAGCAATAATAACAGGT 59.341 34.615 0.00 0.00 45.49 4.00
466 510 7.088589 ACAAAGCACTAGCAATAATAACAGG 57.911 36.000 0.00 0.00 45.49 4.00
467 511 8.853345 CAAACAAAGCACTAGCAATAATAACAG 58.147 33.333 0.00 0.00 45.49 3.16
468 512 8.356657 ACAAACAAAGCACTAGCAATAATAACA 58.643 29.630 0.00 0.00 45.49 2.41
469 513 8.742554 ACAAACAAAGCACTAGCAATAATAAC 57.257 30.769 0.00 0.00 45.49 1.89
471 515 9.834628 GTTACAAACAAAGCACTAGCAATAATA 57.165 29.630 0.00 0.00 45.49 0.98
472 516 8.356657 TGTTACAAACAAAGCACTAGCAATAAT 58.643 29.630 0.00 0.00 40.21 1.28
473 517 7.708051 TGTTACAAACAAAGCACTAGCAATAA 58.292 30.769 0.00 0.00 40.21 1.40
474 518 7.265647 TGTTACAAACAAAGCACTAGCAATA 57.734 32.000 0.00 0.00 40.21 1.90
475 519 6.142818 TGTTACAAACAAAGCACTAGCAAT 57.857 33.333 0.00 0.00 40.21 3.56
476 520 5.568685 TGTTACAAACAAAGCACTAGCAA 57.431 34.783 0.00 0.00 40.21 3.91
477 521 5.530915 AGATGTTACAAACAAAGCACTAGCA 59.469 36.000 0.00 0.00 45.86 3.49
478 522 6.002062 AGATGTTACAAACAAAGCACTAGC 57.998 37.500 0.00 0.00 45.86 3.42
479 523 7.417612 ACAAGATGTTACAAACAAAGCACTAG 58.582 34.615 0.00 0.00 45.86 2.57
480 524 7.328277 ACAAGATGTTACAAACAAAGCACTA 57.672 32.000 0.00 0.00 45.86 2.74
481 525 6.207691 ACAAGATGTTACAAACAAAGCACT 57.792 33.333 0.00 0.00 45.86 4.40
482 526 6.142320 GCTACAAGATGTTACAAACAAAGCAC 59.858 38.462 0.00 0.00 45.86 4.40
483 527 6.039270 AGCTACAAGATGTTACAAACAAAGCA 59.961 34.615 10.08 0.00 45.86 3.91
484 528 6.438763 AGCTACAAGATGTTACAAACAAAGC 58.561 36.000 0.00 0.00 45.86 3.51
485 529 8.128582 TGAAGCTACAAGATGTTACAAACAAAG 58.871 33.333 0.00 0.00 45.86 2.77
486 530 7.913297 GTGAAGCTACAAGATGTTACAAACAAA 59.087 33.333 0.00 0.00 45.86 2.83
487 531 7.282224 AGTGAAGCTACAAGATGTTACAAACAA 59.718 33.333 0.00 0.00 45.86 2.83
488 532 6.765989 AGTGAAGCTACAAGATGTTACAAACA 59.234 34.615 0.00 0.00 46.94 2.83
489 533 7.190920 AGTGAAGCTACAAGATGTTACAAAC 57.809 36.000 0.00 0.00 0.00 2.93
504 548 2.233922 GGTGCTTGGAGTAGTGAAGCTA 59.766 50.000 0.00 0.00 42.19 3.32
505 549 1.002544 GGTGCTTGGAGTAGTGAAGCT 59.997 52.381 0.00 0.00 42.19 3.74
506 550 1.002544 AGGTGCTTGGAGTAGTGAAGC 59.997 52.381 0.00 0.00 42.07 3.86
507 551 3.511934 AGTAGGTGCTTGGAGTAGTGAAG 59.488 47.826 0.00 0.00 0.00 3.02
508 552 3.507411 AGTAGGTGCTTGGAGTAGTGAA 58.493 45.455 0.00 0.00 0.00 3.18
509 553 3.170991 AGTAGGTGCTTGGAGTAGTGA 57.829 47.619 0.00 0.00 0.00 3.41
510 554 3.258372 TCAAGTAGGTGCTTGGAGTAGTG 59.742 47.826 7.81 0.00 44.26 2.74
511 555 3.507411 TCAAGTAGGTGCTTGGAGTAGT 58.493 45.455 7.81 0.00 44.26 2.73
512 556 4.537135 TTCAAGTAGGTGCTTGGAGTAG 57.463 45.455 7.81 0.00 44.26 2.57
513 557 4.967084 TTTCAAGTAGGTGCTTGGAGTA 57.033 40.909 7.81 0.00 44.26 2.59
514 558 3.857157 TTTCAAGTAGGTGCTTGGAGT 57.143 42.857 7.81 0.00 44.26 3.85
515 559 5.529060 GGATATTTCAAGTAGGTGCTTGGAG 59.471 44.000 7.81 0.00 44.26 3.86
516 560 5.045213 TGGATATTTCAAGTAGGTGCTTGGA 60.045 40.000 7.81 0.00 44.26 3.53
517 561 5.192927 TGGATATTTCAAGTAGGTGCTTGG 58.807 41.667 7.81 0.00 44.26 3.61
518 562 6.319658 ACATGGATATTTCAAGTAGGTGCTTG 59.680 38.462 0.00 1.67 45.18 4.01
519 563 6.426587 ACATGGATATTTCAAGTAGGTGCTT 58.573 36.000 0.00 0.00 0.00 3.91
520 564 6.006275 ACATGGATATTTCAAGTAGGTGCT 57.994 37.500 0.00 0.00 0.00 4.40
521 565 6.699575 AACATGGATATTTCAAGTAGGTGC 57.300 37.500 0.00 0.00 0.00 5.01
522 566 8.840321 CCTAAACATGGATATTTCAAGTAGGTG 58.160 37.037 0.00 0.00 0.00 4.00
523 567 7.502561 GCCTAAACATGGATATTTCAAGTAGGT 59.497 37.037 0.00 0.00 0.00 3.08
524 568 7.502226 TGCCTAAACATGGATATTTCAAGTAGG 59.498 37.037 0.00 0.00 0.00 3.18
525 569 8.450578 TGCCTAAACATGGATATTTCAAGTAG 57.549 34.615 0.00 0.00 0.00 2.57
526 570 8.849168 CATGCCTAAACATGGATATTTCAAGTA 58.151 33.333 0.00 0.00 43.05 2.24
527 571 7.719483 CATGCCTAAACATGGATATTTCAAGT 58.281 34.615 0.00 0.00 43.05 3.16
539 583 4.365723 GAAATCTGCCATGCCTAAACATG 58.634 43.478 0.00 0.00 45.74 3.21
540 584 3.067180 CGAAATCTGCCATGCCTAAACAT 59.933 43.478 0.00 0.00 0.00 2.71
541 585 2.423185 CGAAATCTGCCATGCCTAAACA 59.577 45.455 0.00 0.00 0.00 2.83
542 586 2.796032 GCGAAATCTGCCATGCCTAAAC 60.796 50.000 0.00 0.00 0.00 2.01
543 587 1.405105 GCGAAATCTGCCATGCCTAAA 59.595 47.619 0.00 0.00 0.00 1.85
544 588 1.024271 GCGAAATCTGCCATGCCTAA 58.976 50.000 0.00 0.00 0.00 2.69
545 589 2.706636 GCGAAATCTGCCATGCCTA 58.293 52.632 0.00 0.00 0.00 3.93
546 590 3.518003 GCGAAATCTGCCATGCCT 58.482 55.556 0.00 0.00 0.00 4.75
553 597 0.169009 GTCCAAGTGGCGAAATCTGC 59.831 55.000 0.00 0.00 34.44 4.26
554 598 1.522668 TGTCCAAGTGGCGAAATCTG 58.477 50.000 0.00 0.00 34.44 2.90
555 599 2.154462 CTTGTCCAAGTGGCGAAATCT 58.846 47.619 0.00 0.00 33.87 2.40
556 600 2.151202 TCTTGTCCAAGTGGCGAAATC 58.849 47.619 6.90 0.00 39.38 2.17
557 601 2.270352 TCTTGTCCAAGTGGCGAAAT 57.730 45.000 6.90 0.00 39.38 2.17
558 602 2.045561 TTCTTGTCCAAGTGGCGAAA 57.954 45.000 6.90 0.00 39.38 3.46
559 603 2.045561 TTTCTTGTCCAAGTGGCGAA 57.954 45.000 6.90 0.00 39.38 4.70
560 604 2.045561 TTTTCTTGTCCAAGTGGCGA 57.954 45.000 6.90 0.00 39.38 5.54
561 605 2.099098 ACTTTTTCTTGTCCAAGTGGCG 59.901 45.455 6.90 0.00 39.38 5.69
562 606 3.130340 TCACTTTTTCTTGTCCAAGTGGC 59.870 43.478 10.23 0.00 44.20 5.01
563 607 4.981806 TCACTTTTTCTTGTCCAAGTGG 57.018 40.909 10.23 0.00 44.20 4.00
564 608 7.545265 TCAAAATCACTTTTTCTTGTCCAAGTG 59.455 33.333 6.90 4.80 45.04 3.16
565 609 7.610865 TCAAAATCACTTTTTCTTGTCCAAGT 58.389 30.769 6.90 0.00 35.31 3.16
566 610 8.545420 CATCAAAATCACTTTTTCTTGTCCAAG 58.455 33.333 0.47 0.47 35.31 3.61
567 611 7.011295 GCATCAAAATCACTTTTTCTTGTCCAA 59.989 33.333 0.00 0.00 35.31 3.53
568 612 6.479660 GCATCAAAATCACTTTTTCTTGTCCA 59.520 34.615 0.00 0.00 35.31 4.02
569 613 6.479660 TGCATCAAAATCACTTTTTCTTGTCC 59.520 34.615 0.00 0.00 35.31 4.02
570 614 7.467557 TGCATCAAAATCACTTTTTCTTGTC 57.532 32.000 0.00 0.00 35.31 3.18
571 615 7.846644 TTGCATCAAAATCACTTTTTCTTGT 57.153 28.000 0.00 0.00 35.31 3.16
574 618 8.702438 CGTATTTGCATCAAAATCACTTTTTCT 58.298 29.630 0.00 0.00 36.90 2.52
575 619 8.698854 TCGTATTTGCATCAAAATCACTTTTTC 58.301 29.630 0.00 0.00 36.90 2.29
576 620 8.586570 TCGTATTTGCATCAAAATCACTTTTT 57.413 26.923 0.00 0.00 36.90 1.94
577 621 8.081633 TCTCGTATTTGCATCAAAATCACTTTT 58.918 29.630 0.00 0.00 36.90 2.27
578 622 7.538678 GTCTCGTATTTGCATCAAAATCACTTT 59.461 33.333 0.00 0.00 36.90 2.66
581 625 6.314018 TGTCTCGTATTTGCATCAAAATCAC 58.686 36.000 0.00 0.00 36.90 3.06
583 627 7.795431 TTTGTCTCGTATTTGCATCAAAATC 57.205 32.000 0.00 0.00 36.90 2.17
622 677 1.064505 CCGCGCTGTTCATGATGAAAT 59.935 47.619 9.78 0.00 38.22 2.17
627 682 1.585267 TTTGCCGCGCTGTTCATGAT 61.585 50.000 5.56 0.00 0.00 2.45
652 707 0.164647 CTTGCTTCTTCTTCGTGGCG 59.835 55.000 0.00 0.00 0.00 5.69
658 713 5.956068 ACATTTCCTCTTGCTTCTTCTTC 57.044 39.130 0.00 0.00 0.00 2.87
664 719 6.142958 CGAAAGAAAACATTTCCTCTTGCTTC 59.857 38.462 0.00 0.00 33.92 3.86
667 722 4.148871 GCGAAAGAAAACATTTCCTCTTGC 59.851 41.667 0.00 0.00 33.92 4.01
668 723 5.280945 TGCGAAAGAAAACATTTCCTCTTG 58.719 37.500 0.00 0.00 33.92 3.02
693 748 6.022958 AGAACCAGGTAGGGCAAAATAAATT 58.977 36.000 0.00 0.00 43.89 1.82
694 749 5.589831 AGAACCAGGTAGGGCAAAATAAAT 58.410 37.500 0.00 0.00 43.89 1.40
695 750 5.005628 AGAACCAGGTAGGGCAAAATAAA 57.994 39.130 0.00 0.00 43.89 1.40
696 751 4.668138 AGAACCAGGTAGGGCAAAATAA 57.332 40.909 0.00 0.00 43.89 1.40
697 752 4.340617 CAAGAACCAGGTAGGGCAAAATA 58.659 43.478 0.00 0.00 43.89 1.40
698 753 3.165071 CAAGAACCAGGTAGGGCAAAAT 58.835 45.455 0.00 0.00 43.89 1.82
699 754 2.593026 CAAGAACCAGGTAGGGCAAAA 58.407 47.619 0.00 0.00 43.89 2.44
702 757 1.378762 GCAAGAACCAGGTAGGGCA 59.621 57.895 0.00 0.00 43.89 5.36
719 774 0.248215 CATGCTCATTTCGGTTCGGC 60.248 55.000 0.00 0.00 0.00 5.54
722 777 4.685169 TTTCTCATGCTCATTTCGGTTC 57.315 40.909 0.00 0.00 0.00 3.62
725 780 4.083110 AGTGTTTTCTCATGCTCATTTCGG 60.083 41.667 0.00 0.00 0.00 4.30
745 800 8.983724 TCAGACAACCTTTTTAAAACAAAAGTG 58.016 29.630 0.00 0.00 40.71 3.16
746 801 9.549078 TTCAGACAACCTTTTTAAAACAAAAGT 57.451 25.926 0.00 0.00 40.71 2.66
748 803 8.994170 CCTTCAGACAACCTTTTTAAAACAAAA 58.006 29.630 0.00 0.00 0.00 2.44
749 804 8.151596 ACCTTCAGACAACCTTTTTAAAACAAA 58.848 29.630 0.00 0.00 0.00 2.83
752 807 6.471198 CGACCTTCAGACAACCTTTTTAAAAC 59.529 38.462 0.00 0.00 0.00 2.43
753 808 6.404954 CCGACCTTCAGACAACCTTTTTAAAA 60.405 38.462 0.00 0.00 0.00 1.52
757 812 2.949644 CCGACCTTCAGACAACCTTTTT 59.050 45.455 0.00 0.00 0.00 1.94
762 817 0.391597 TCACCGACCTTCAGACAACC 59.608 55.000 0.00 0.00 0.00 3.77
764 819 3.485463 AATTCACCGACCTTCAGACAA 57.515 42.857 0.00 0.00 0.00 3.18
770 825 1.243902 TGCCAAATTCACCGACCTTC 58.756 50.000 0.00 0.00 0.00 3.46
777 832 4.248058 CTGGATCTTTTGCCAAATTCACC 58.752 43.478 0.00 0.00 32.95 4.02
785 840 2.692709 TTTCCCTGGATCTTTTGCCA 57.307 45.000 0.00 0.00 0.00 4.92
802 857 9.998106 ACAGAACAGATAGTACAGTAAACATTT 57.002 29.630 0.00 0.00 0.00 2.32
804 859 9.026121 AGACAGAACAGATAGTACAGTAAACAT 57.974 33.333 0.00 0.00 0.00 2.71
832 889 6.015991 ACTACTACTACTACTTCAGGGCAT 57.984 41.667 0.00 0.00 0.00 4.40
844 901 8.410141 CGTCAGGTTACTACTACTACTACTACT 58.590 40.741 0.00 0.00 0.00 2.57
845 902 8.407064 TCGTCAGGTTACTACTACTACTACTAC 58.593 40.741 0.00 0.00 0.00 2.73
846 903 8.407064 GTCGTCAGGTTACTACTACTACTACTA 58.593 40.741 0.00 0.00 0.00 1.82
847 904 7.262048 GTCGTCAGGTTACTACTACTACTACT 58.738 42.308 0.00 0.00 0.00 2.57
848 905 6.197468 CGTCGTCAGGTTACTACTACTACTAC 59.803 46.154 0.00 0.00 0.00 2.73
849 906 6.127703 ACGTCGTCAGGTTACTACTACTACTA 60.128 42.308 0.00 0.00 0.00 1.82
850 907 5.105752 CGTCGTCAGGTTACTACTACTACT 58.894 45.833 0.00 0.00 0.00 2.57
851 908 4.865365 ACGTCGTCAGGTTACTACTACTAC 59.135 45.833 0.00 0.00 0.00 2.73
852 909 4.864806 CACGTCGTCAGGTTACTACTACTA 59.135 45.833 0.00 0.00 0.00 1.82
944 1012 0.924090 GTTGATCGATGGCGTCTGTC 59.076 55.000 0.54 3.48 38.98 3.51
964 1032 0.395862 TAACTCCCTCCCTCTCTGCG 60.396 60.000 0.00 0.00 0.00 5.18
970 1038 1.477295 CGTCAAGTAACTCCCTCCCTC 59.523 57.143 0.00 0.00 0.00 4.30
973 1041 1.891150 TGTCGTCAAGTAACTCCCTCC 59.109 52.381 0.00 0.00 0.00 4.30
988 1056 1.967066 GGATCCCATCTGATCTGTCGT 59.033 52.381 0.00 0.00 40.80 4.34
996 1065 1.337384 CCACCACGGATCCCATCTGA 61.337 60.000 6.06 0.00 39.01 3.27
1158 1227 1.605992 CATGAAGAGCCTGGCCAGA 59.394 57.895 34.91 12.81 0.00 3.86
1221 1290 2.045926 ACGATCCCTGCCTTGCAC 60.046 61.111 0.00 0.00 33.79 4.57
1227 1296 4.899239 CAGCGGACGATCCCTGCC 62.899 72.222 9.28 0.00 31.44 4.85
1314 1383 2.811317 CGCCAGAGGAAGCACGAC 60.811 66.667 0.00 0.00 0.00 4.34
1449 1536 0.394352 CCCACCTCCTTGTACCATGC 60.394 60.000 0.00 0.00 0.00 4.06
1479 1566 3.808656 GACGACGACGACCCCTCC 61.809 72.222 15.32 0.00 42.66 4.30
1696 1795 7.012327 CCAAAGCCGATAAATGATCTGAACTAA 59.988 37.037 0.00 0.00 31.70 2.24
1732 1834 1.272490 CTCCTCACACTACTTCCGCAA 59.728 52.381 0.00 0.00 0.00 4.85
1740 1895 4.452455 CCAACACATTTCTCCTCACACTAC 59.548 45.833 0.00 0.00 0.00 2.73
1746 1901 4.074259 CACATCCAACACATTTCTCCTCA 58.926 43.478 0.00 0.00 0.00 3.86
1762 1917 6.385649 TGAAGGAGTTTTTACAACACATCC 57.614 37.500 0.00 0.00 0.00 3.51
1774 1929 3.566351 CCCTCAGGTTTGAAGGAGTTTT 58.434 45.455 0.00 0.00 37.12 2.43
1785 1940 1.072930 ACACCTCCCCCTCAGGTTT 60.073 57.895 0.00 0.00 41.95 3.27
1802 1957 7.118390 ACATGCTGTATCACTTTCTTCTTACAC 59.882 37.037 0.00 0.00 0.00 2.90
1855 2010 7.568349 ACTCTTGTGATGATCTTTATTGGCTA 58.432 34.615 0.00 0.00 0.00 3.93
1889 2044 5.450137 CCGAACAGTCCGTTATCAAGATACT 60.450 44.000 0.00 0.00 38.19 2.12
1894 2049 2.955614 ACCGAACAGTCCGTTATCAAG 58.044 47.619 0.00 0.00 38.19 3.02
1895 2050 3.507233 ACTACCGAACAGTCCGTTATCAA 59.493 43.478 0.00 0.00 38.19 2.57
1896 2051 3.084039 ACTACCGAACAGTCCGTTATCA 58.916 45.455 0.00 0.00 38.19 2.15
1897 2052 3.689346 GACTACCGAACAGTCCGTTATC 58.311 50.000 0.00 0.00 38.19 1.75
1899 2054 1.464608 CGACTACCGAACAGTCCGTTA 59.535 52.381 5.73 0.00 39.43 3.18
1900 2055 0.239347 CGACTACCGAACAGTCCGTT 59.761 55.000 5.73 0.00 39.43 4.44
1901 2056 1.871772 CGACTACCGAACAGTCCGT 59.128 57.895 5.73 0.00 39.43 4.69
1902 2057 1.513586 GCGACTACCGAACAGTCCG 60.514 63.158 0.00 0.00 39.43 4.79
1903 2058 0.172803 ATGCGACTACCGAACAGTCC 59.827 55.000 0.00 1.32 39.43 3.85
1905 2060 1.135373 CAGATGCGACTACCGAACAGT 60.135 52.381 0.00 0.00 41.76 3.55
1906 2061 1.550065 CAGATGCGACTACCGAACAG 58.450 55.000 0.00 0.00 41.76 3.16
1908 2063 1.146358 GCCAGATGCGACTACCGAAC 61.146 60.000 0.00 0.00 41.76 3.95
1909 2064 1.141019 GCCAGATGCGACTACCGAA 59.859 57.895 0.00 0.00 41.76 4.30
1910 2065 2.805546 GCCAGATGCGACTACCGA 59.194 61.111 0.00 0.00 41.76 4.69
1913 2068 3.753179 AGCACAGCCAGATGCGACTAC 62.753 57.143 0.00 0.00 46.74 2.73
1914 2069 1.607801 AGCACAGCCAGATGCGACTA 61.608 55.000 0.00 0.00 46.74 2.59
1915 2070 2.849120 GAGCACAGCCAGATGCGACT 62.849 60.000 0.00 0.00 46.74 4.18
1916 2071 2.435586 AGCACAGCCAGATGCGAC 60.436 61.111 0.00 0.00 46.74 5.19
1917 2072 2.125391 GAGCACAGCCAGATGCGA 60.125 61.111 0.00 0.00 46.74 5.10
1918 2073 3.200593 GGAGCACAGCCAGATGCG 61.201 66.667 0.00 0.00 46.74 4.73
1919 2074 1.453379 ATGGAGCACAGCCAGATGC 60.453 57.895 0.00 0.00 39.11 3.91
1921 2076 1.453379 GCATGGAGCACAGCCAGAT 60.453 57.895 0.00 0.00 44.79 2.90
1922 2077 2.045634 GCATGGAGCACAGCCAGA 60.046 61.111 0.00 0.00 44.79 3.86
1937 2106 2.112928 TGCCTTCTTCGCCAAGCA 59.887 55.556 0.00 0.00 0.00 3.91
1942 2111 3.435186 GCTGGTGCCTTCTTCGCC 61.435 66.667 0.00 0.00 34.79 5.54
1945 2114 1.135575 CGATTTGCTGGTGCCTTCTTC 60.136 52.381 0.00 0.00 38.71 2.87
1946 2115 0.883833 CGATTTGCTGGTGCCTTCTT 59.116 50.000 0.00 0.00 38.71 2.52
1948 2117 1.244019 ACCGATTTGCTGGTGCCTTC 61.244 55.000 0.00 0.00 37.02 3.46
1955 2124 1.667724 GACATCTCACCGATTTGCTGG 59.332 52.381 0.00 0.00 0.00 4.85
1956 2125 2.625737 AGACATCTCACCGATTTGCTG 58.374 47.619 0.00 0.00 0.00 4.41
1969 2138 4.409247 GTGGTATAAGGTGGGAAGACATCT 59.591 45.833 0.00 0.00 31.91 2.90
1974 2143 2.112998 CGGTGGTATAAGGTGGGAAGA 58.887 52.381 0.00 0.00 0.00 2.87
1975 2144 1.474498 GCGGTGGTATAAGGTGGGAAG 60.474 57.143 0.00 0.00 0.00 3.46
1979 2152 0.472471 ATGGCGGTGGTATAAGGTGG 59.528 55.000 0.00 0.00 0.00 4.61
1989 2162 4.818863 TGATGGCCATGGCGGTGG 62.819 66.667 29.90 4.50 43.06 4.61
1994 2167 1.251251 GGTATCTTGATGGCCATGGC 58.749 55.000 29.47 29.47 41.06 4.40
1998 2171 0.546122 AAGCGGTATCTTGATGGCCA 59.454 50.000 8.56 8.56 0.00 5.36
2000 2173 3.403038 ACATAAGCGGTATCTTGATGGC 58.597 45.455 0.00 0.00 0.00 4.40
2010 2183 3.623703 TGTAGGTGAGACATAAGCGGTA 58.376 45.455 0.00 0.00 0.00 4.02
2011 2184 2.453521 TGTAGGTGAGACATAAGCGGT 58.546 47.619 0.00 0.00 0.00 5.68
2014 2187 5.525378 CCTGAATTGTAGGTGAGACATAAGC 59.475 44.000 0.00 0.00 0.00 3.09
2017 2190 4.141711 GCCCTGAATTGTAGGTGAGACATA 60.142 45.833 5.00 0.00 33.31 2.29
2024 2197 1.086696 CGTGCCCTGAATTGTAGGTG 58.913 55.000 5.00 0.00 33.31 4.00
2025 2198 0.981183 TCGTGCCCTGAATTGTAGGT 59.019 50.000 5.00 0.00 33.31 3.08
2026 2199 1.066143 ACTCGTGCCCTGAATTGTAGG 60.066 52.381 0.00 0.00 35.01 3.18
2027 2200 2.271800 GACTCGTGCCCTGAATTGTAG 58.728 52.381 0.00 0.00 0.00 2.74
2028 2201 1.621317 TGACTCGTGCCCTGAATTGTA 59.379 47.619 0.00 0.00 0.00 2.41
2029 2202 0.396435 TGACTCGTGCCCTGAATTGT 59.604 50.000 0.00 0.00 0.00 2.71
2030 2203 0.798776 GTGACTCGTGCCCTGAATTG 59.201 55.000 0.00 0.00 0.00 2.32
2031 2204 0.687354 AGTGACTCGTGCCCTGAATT 59.313 50.000 0.00 0.00 0.00 2.17
2032 2205 0.036952 CAGTGACTCGTGCCCTGAAT 60.037 55.000 0.00 0.00 0.00 2.57
2033 2206 1.112916 TCAGTGACTCGTGCCCTGAA 61.113 55.000 0.00 0.00 0.00 3.02
2034 2207 1.112916 TTCAGTGACTCGTGCCCTGA 61.113 55.000 0.00 0.00 0.00 3.86
2035 2208 0.036952 ATTCAGTGACTCGTGCCCTG 60.037 55.000 0.00 0.00 0.00 4.45
2036 2209 0.687354 AATTCAGTGACTCGTGCCCT 59.313 50.000 0.00 0.00 0.00 5.19
2037 2210 0.798776 CAATTCAGTGACTCGTGCCC 59.201 55.000 0.00 0.00 0.00 5.36
2038 2211 1.512926 ACAATTCAGTGACTCGTGCC 58.487 50.000 0.00 0.00 0.00 5.01
2039 2212 2.092838 GCTACAATTCAGTGACTCGTGC 59.907 50.000 0.00 0.00 0.00 5.34
2040 2213 3.317150 TGCTACAATTCAGTGACTCGTG 58.683 45.455 0.00 0.00 0.00 4.35
2041 2214 3.660501 TGCTACAATTCAGTGACTCGT 57.339 42.857 0.00 0.00 0.00 4.18
2042 2215 3.553511 GGATGCTACAATTCAGTGACTCG 59.446 47.826 0.00 0.00 0.00 4.18
2043 2216 4.331168 GTGGATGCTACAATTCAGTGACTC 59.669 45.833 0.00 0.00 0.00 3.36
2044 2217 4.256920 GTGGATGCTACAATTCAGTGACT 58.743 43.478 0.00 0.00 0.00 3.41
2045 2218 4.002982 TGTGGATGCTACAATTCAGTGAC 58.997 43.478 0.00 0.00 0.00 3.67
2046 2219 4.284829 TGTGGATGCTACAATTCAGTGA 57.715 40.909 0.00 0.00 0.00 3.41
2047 2220 5.571784 ATTGTGGATGCTACAATTCAGTG 57.428 39.130 3.71 0.00 44.04 3.66
2048 2221 6.238842 GCATATTGTGGATGCTACAATTCAGT 60.239 38.462 13.10 0.00 44.04 3.41
2049 2222 6.147581 GCATATTGTGGATGCTACAATTCAG 58.852 40.000 13.10 6.45 44.04 3.02
2050 2223 6.075762 GCATATTGTGGATGCTACAATTCA 57.924 37.500 13.10 0.00 44.04 2.57
2060 2233 1.611977 CAGGGCAGCATATTGTGGATG 59.388 52.381 0.00 0.00 0.00 3.51
2061 2234 1.479942 CCAGGGCAGCATATTGTGGAT 60.480 52.381 0.00 0.00 0.00 3.41
2062 2235 0.106569 CCAGGGCAGCATATTGTGGA 60.107 55.000 0.00 0.00 0.00 4.02
2063 2236 0.396139 ACCAGGGCAGCATATTGTGG 60.396 55.000 0.00 0.00 0.00 4.17
2064 2237 0.742505 CACCAGGGCAGCATATTGTG 59.257 55.000 0.00 0.00 0.00 3.33
2065 2238 1.039233 GCACCAGGGCAGCATATTGT 61.039 55.000 0.00 0.00 0.00 2.71
2066 2239 0.754217 AGCACCAGGGCAGCATATTG 60.754 55.000 0.00 0.00 35.83 1.90
2067 2240 0.846015 TAGCACCAGGGCAGCATATT 59.154 50.000 0.00 0.00 35.83 1.28
2068 2241 0.399454 CTAGCACCAGGGCAGCATAT 59.601 55.000 0.00 0.00 35.83 1.78
2069 2242 0.690744 TCTAGCACCAGGGCAGCATA 60.691 55.000 0.00 0.00 35.83 3.14
2070 2243 1.980784 CTCTAGCACCAGGGCAGCAT 61.981 60.000 0.00 0.00 35.83 3.79
2071 2244 2.607442 TCTAGCACCAGGGCAGCA 60.607 61.111 0.00 0.00 35.83 4.41
2072 2245 2.188994 CTCTAGCACCAGGGCAGC 59.811 66.667 0.00 0.00 35.83 5.25
2073 2246 2.906458 CCTCTAGCACCAGGGCAG 59.094 66.667 0.00 0.00 35.83 4.85
2074 2247 3.402681 GCCTCTAGCACCAGGGCA 61.403 66.667 0.00 0.00 42.97 5.36
2075 2248 4.537433 CGCCTCTAGCACCAGGGC 62.537 72.222 0.00 0.00 44.04 5.19
2076 2249 2.759973 TCGCCTCTAGCACCAGGG 60.760 66.667 0.00 0.00 44.04 4.45
2077 2250 2.496817 GTCGCCTCTAGCACCAGG 59.503 66.667 0.00 0.00 44.04 4.45
2078 2251 2.496817 GGTCGCCTCTAGCACCAG 59.503 66.667 0.00 0.00 44.04 4.00
2079 2252 3.449227 CGGTCGCCTCTAGCACCA 61.449 66.667 0.00 0.00 44.04 4.17
2080 2253 4.874977 GCGGTCGCCTCTAGCACC 62.875 72.222 3.73 0.00 44.04 5.01
2081 2254 4.129737 TGCGGTCGCCTCTAGCAC 62.130 66.667 12.94 0.00 44.04 4.40
2082 2255 4.129737 GTGCGGTCGCCTCTAGCA 62.130 66.667 12.94 0.00 44.04 3.49
2107 2280 3.944250 AAGGGGTTCATGGCGCCAG 62.944 63.158 35.36 25.00 40.86 4.85
2111 2284 0.322098 TACACAAGGGGTTCATGGCG 60.322 55.000 0.00 0.00 0.00 5.69
2126 2299 6.425504 GCATCTGTTCTGCTGATATTTACAC 58.574 40.000 0.00 0.00 36.68 2.90
2127 2300 6.609237 GCATCTGTTCTGCTGATATTTACA 57.391 37.500 0.00 0.00 36.68 2.41
2138 2311 1.064208 CAGCATCAGCATCTGTTCTGC 59.936 52.381 9.18 9.18 45.49 4.26
2139 2312 2.629051 TCAGCATCAGCATCTGTTCTG 58.371 47.619 0.00 1.51 45.49 3.02
2140 2313 3.206964 CATCAGCATCAGCATCTGTTCT 58.793 45.455 0.00 0.00 45.49 3.01
2141 2314 2.287069 GCATCAGCATCAGCATCTGTTC 60.287 50.000 0.00 0.00 45.49 3.18
2142 2315 1.676529 GCATCAGCATCAGCATCTGTT 59.323 47.619 0.00 0.00 45.49 3.16
2143 2316 1.134068 AGCATCAGCATCAGCATCTGT 60.134 47.619 0.00 0.00 45.49 3.41
2144 2317 1.265365 CAGCATCAGCATCAGCATCTG 59.735 52.381 0.00 0.00 45.49 2.90
2145 2318 1.141053 TCAGCATCAGCATCAGCATCT 59.859 47.619 0.00 0.00 45.49 2.90
2146 2319 1.594331 TCAGCATCAGCATCAGCATC 58.406 50.000 0.00 0.00 45.49 3.91
2147 2320 2.278332 ATCAGCATCAGCATCAGCAT 57.722 45.000 0.00 0.00 45.49 3.79
2148 2321 2.104281 AGTATCAGCATCAGCATCAGCA 59.896 45.455 0.00 0.00 45.49 4.41
2149 2322 2.768698 AGTATCAGCATCAGCATCAGC 58.231 47.619 0.00 0.00 45.49 4.26
2150 2323 5.752892 AAAAGTATCAGCATCAGCATCAG 57.247 39.130 0.00 0.00 45.49 2.90
2151 2324 6.585416 TCTAAAAGTATCAGCATCAGCATCA 58.415 36.000 0.00 0.00 45.49 3.07
2152 2325 7.488187 TTCTAAAAGTATCAGCATCAGCATC 57.512 36.000 0.00 0.00 45.49 3.91
2153 2326 7.870509 TTTCTAAAAGTATCAGCATCAGCAT 57.129 32.000 0.00 0.00 45.49 3.79
2154 2327 7.148188 CCTTTTCTAAAAGTATCAGCATCAGCA 60.148 37.037 12.80 0.00 42.92 4.41
2155 2328 7.148171 ACCTTTTCTAAAAGTATCAGCATCAGC 60.148 37.037 12.80 0.00 42.92 4.26
2156 2329 8.273780 ACCTTTTCTAAAAGTATCAGCATCAG 57.726 34.615 12.80 0.00 42.92 2.90
2157 2330 8.635765 AACCTTTTCTAAAAGTATCAGCATCA 57.364 30.769 12.80 0.00 42.92 3.07
2158 2331 9.914131 AAAACCTTTTCTAAAAGTATCAGCATC 57.086 29.630 12.80 0.00 42.92 3.91
2182 2355 2.454538 ACAAACCGGTGGTACCAAAAA 58.545 42.857 18.31 0.00 38.47 1.94
2183 2356 2.140839 ACAAACCGGTGGTACCAAAA 57.859 45.000 18.31 0.00 38.47 2.44
2184 2357 3.287867 TTACAAACCGGTGGTACCAAA 57.712 42.857 18.31 0.31 38.47 3.28
2185 2358 3.505480 ATTACAAACCGGTGGTACCAA 57.495 42.857 18.31 1.64 38.47 3.67
2186 2359 3.055240 CCTATTACAAACCGGTGGTACCA 60.055 47.826 11.60 11.60 38.47 3.25
2187 2360 3.055167 ACCTATTACAAACCGGTGGTACC 60.055 47.826 8.52 4.43 33.12 3.34
2188 2361 4.206477 ACCTATTACAAACCGGTGGTAC 57.794 45.455 8.52 0.00 33.12 3.34
2189 2362 4.906747 AACCTATTACAAACCGGTGGTA 57.093 40.909 8.52 11.90 33.12 3.25
2190 2363 3.793819 AACCTATTACAAACCGGTGGT 57.206 42.857 8.52 13.09 37.65 4.16
2191 2364 5.463061 CGTATAACCTATTACAAACCGGTGG 59.537 44.000 8.52 6.38 0.00 4.61
2205 2378 3.207265 TGGTCCTACGCGTATAACCTA 57.793 47.619 32.69 22.99 0.00 3.08
2207 2380 2.869233 TTGGTCCTACGCGTATAACC 57.131 50.000 29.45 29.45 0.00 2.85
2212 2385 4.652421 TCAATATTTGGTCCTACGCGTA 57.348 40.909 19.40 19.40 0.00 4.42
2213 2386 3.530265 TCAATATTTGGTCCTACGCGT 57.470 42.857 19.17 19.17 0.00 6.01
2215 2388 3.563808 TGCATCAATATTTGGTCCTACGC 59.436 43.478 0.00 0.00 0.00 4.42
2264 2445 9.349145 GCACCGTATGAACAGTAAATTAAAAAT 57.651 29.630 0.00 0.00 0.00 1.82
2265 2446 8.350722 TGCACCGTATGAACAGTAAATTAAAAA 58.649 29.630 0.00 0.00 0.00 1.94
2266 2447 7.872881 TGCACCGTATGAACAGTAAATTAAAA 58.127 30.769 0.00 0.00 0.00 1.52
2267 2448 7.388224 TCTGCACCGTATGAACAGTAAATTAAA 59.612 33.333 0.00 0.00 0.00 1.52
2271 2452 4.827692 TCTGCACCGTATGAACAGTAAAT 58.172 39.130 0.00 0.00 0.00 1.40
2283 2464 1.433471 CGAGCTCATCTGCACCGTA 59.567 57.895 15.40 0.00 34.99 4.02
2285 2466 2.584418 CCGAGCTCATCTGCACCG 60.584 66.667 15.40 0.00 34.99 4.94
2287 2468 2.894387 GCCCGAGCTCATCTGCAC 60.894 66.667 15.40 0.00 35.50 4.57
2334 2515 9.159364 GGAAACCGTTAGAAGATACTACAAAAT 57.841 33.333 0.00 0.00 0.00 1.82
2351 2532 2.354805 GCAGAGGACATAGGAAACCGTT 60.355 50.000 0.00 0.00 0.00 4.44
2352 2533 1.207329 GCAGAGGACATAGGAAACCGT 59.793 52.381 0.00 0.00 0.00 4.83
2353 2534 1.482593 AGCAGAGGACATAGGAAACCG 59.517 52.381 0.00 0.00 0.00 4.44
2354 2535 3.636153 AAGCAGAGGACATAGGAAACC 57.364 47.619 0.00 0.00 0.00 3.27
2355 2536 6.823689 TGAAATAAGCAGAGGACATAGGAAAC 59.176 38.462 0.00 0.00 0.00 2.78
2356 2537 6.957631 TGAAATAAGCAGAGGACATAGGAAA 58.042 36.000 0.00 0.00 0.00 3.13
2357 2538 6.560003 TGAAATAAGCAGAGGACATAGGAA 57.440 37.500 0.00 0.00 0.00 3.36
2358 2539 6.560003 TTGAAATAAGCAGAGGACATAGGA 57.440 37.500 0.00 0.00 0.00 2.94
2359 2540 7.255381 CCATTTGAAATAAGCAGAGGACATAGG 60.255 40.741 0.00 0.00 0.00 2.57
2360 2541 7.500227 TCCATTTGAAATAAGCAGAGGACATAG 59.500 37.037 0.00 0.00 0.00 2.23
2405 2586 9.661563 AAATCATAAGTATTGAACGACTTGGTA 57.338 29.630 4.95 0.00 36.58 3.25
2408 2589 9.825972 AACAAATCATAAGTATTGAACGACTTG 57.174 29.630 4.95 0.00 36.58 3.16
2415 2596 7.094592 TGCCACGAACAAATCATAAGTATTGAA 60.095 33.333 0.00 0.00 0.00 2.69
2440 2621 1.732941 TACAGCCAAACGCAGGTATG 58.267 50.000 0.00 0.00 41.38 2.39
2441 2622 2.483014 TTACAGCCAAACGCAGGTAT 57.517 45.000 0.00 0.00 41.38 2.73
2442 2623 2.483014 ATTACAGCCAAACGCAGGTA 57.517 45.000 0.00 0.00 41.38 3.08
2443 2624 1.269448 CAATTACAGCCAAACGCAGGT 59.731 47.619 0.00 0.00 41.38 4.00
2444 2625 1.981254 CAATTACAGCCAAACGCAGG 58.019 50.000 0.00 0.00 41.38 4.85
2462 2643 0.953727 GTCAACATCAAGTGGCAGCA 59.046 50.000 0.00 0.00 0.00 4.41
2523 2709 6.105333 GCATTTTGGCAAGGTATAAACATGA 58.895 36.000 0.00 0.00 0.00 3.07
2530 2716 3.006112 TCGGCATTTTGGCAAGGTATA 57.994 42.857 0.00 0.00 43.94 1.47
2531 2717 1.846007 TCGGCATTTTGGCAAGGTAT 58.154 45.000 0.00 0.00 43.94 2.73
2548 2734 0.179001 AAACCTCCCACCCAACTTCG 60.179 55.000 0.00 0.00 0.00 3.79
2567 2754 2.064434 TGGTGTCATGTTTCCAGCAA 57.936 45.000 0.00 0.00 34.04 3.91
2583 2770 3.527533 CTTGCTTATTTGCATGCATGGT 58.472 40.909 27.34 12.86 42.96 3.55
2594 2781 6.374333 TGAGAAAATACTCGCCTTGCTTATTT 59.626 34.615 0.00 0.00 39.49 1.40
2618 2806 0.824109 TACGTCAGGAGCCCATCTTG 59.176 55.000 0.00 0.00 36.37 3.02
2623 2811 1.116536 TGTGTTACGTCAGGAGCCCA 61.117 55.000 0.00 0.00 0.00 5.36
2624 2812 0.034337 TTGTGTTACGTCAGGAGCCC 59.966 55.000 0.00 0.00 0.00 5.19
2626 2814 2.413837 ACATTGTGTTACGTCAGGAGC 58.586 47.619 0.00 0.00 0.00 4.70


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.