>input_sequence_71846
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----------------------------ATGGGATCCGTGGTGGGCACGGCGGCGAGCGGCGTGGGCACGCTGCTCGGCG
GCGCCGTCGCCGCGCCCTTCAGGGCCATCCTCAGCGCGTCCTGCGAGGGCGTCTGCTCGGGGACGTGGGACGTGGCCTGC
TTCCTGGAGCACCTCTGCGCCGCCAGTCTGGCCAGGCTCTTCATGGTCATCGTCCTCACCTACGTCGTGCTCTTCTTCGC
CTACCTCGTGTGCAAGGCAGGGATCGTCCGCTGCGTGGCCAAGAACGCCTGCAAGGTCGCCGGGGCGGCGTGCTCCGGCT
GCTGCCACGCGCTGAAGGGATCGTCGTGCTTCCTCTGGCGCAAGCTGCGGGACACCAAGCGCGTGTACCACG---GCCGC
CGCCGGC------------GGCATCCGGACGTGGAGACGGGAGTTGGAGATTGGAGCTC---CGACGAGGAGAGCGACGG
CGATGGTGGCCACGGGCATGGTACAAGGAGGTGGGGCAGGGCGAGGGAGGGGTCGTCGTCGTCG------GTGAGGGAGA
GGAGGAAGGACAGGCTGCGCCGGTCGCTGCGCCTGAGGAGATTCACCTCCCACAAGGAGCAGTACGCCACGGCGAGAAGC
CATGGGGGCGGAAGGCATCACCGCGGCAGGGTCGGGGTGC------CGTCCACGTCGCTGCGTGTCGACGCCGGGAGGAA
GTTCAAGCGCGTCCGTACATAA----------------------------------------------------------
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>chr5D_1_TraesCS5D01G450000
TTGTAAACTGGATGCAGTCGCTAACCGTAGTATCTTGATTCCAGTTCAAGTGTCGACAAACTTTATCGTCACTGAACGTT
AAGCTTGTTCTATCTTTGGTTGTTGGATCATGGAATTCAGT------------------------------------GGC
AGCCATTCCGAGGTTGGTCTGGTCCTGTGCGGACTGGGATTGGCCCTCGGTGGTTGCAATGGCATGAATGGCACGGTGGT
CGTATGGCATTGCCGGGTCGCCGAGTAGCGCCGGAGCCCGGAGAATGTAACTGGCTCGTTAGCTTTTCCTTTTTGTCTTG
CGGGAAGTGGTAAATGATGAAATTTGCACTTGAACCAACCTTAGTCTCAGGTTGGTTGCCCAAAGGTCGGTGAATTGGGC
AAAAGATCCAGGGAACTGTTTACTGTTCATATGTTCTGTGTCGT-------TCCCTGGAGCAGCACTAGTAACCTGGCGC
TTGCGGCTTCTAACCAATTGCTGTTTCTACCTGTTATTATTGCTAGTGCTTTGTTTGTAACATCTTGTAGCTTCACTACT
CCAAGCACCTACTTGAAATATCCATGTTTAGGCATGGCAGATTTCGCCACTTGGACAAGAAAAAGTGATTTTGATGCAAA
TACGAGACA-----------AAAAAACACCAGTTTGATTTCATCATGAACAGCGCGGCAAACTTTTCGCCACGAAGAAGA
AGCAAGAGGAAATGTTTTCTTTCGCAAAATTTATTTTGCCCTACCTGGTTCTTGCCGAACCGAAATGAGCATGAGAAAAC
ACTTTTGTTTTAAAAAGGTTGTCTGAAGGTCGGTGAATTTGGCAAAAGATCCAGGGAAATGTTTACTGTAC--TATCTGT
TCTGTCTCATGCCCTGAAGTAGTAGTAGTAGTAGTAGTAACCTGAC---GACGTGAGCCAACCAACGCGCACGTT-----
---GCCAAAGGCAACTGCCGACGGTTTGGTACAAAACGGATTAACAATCCAGACAGACGCCATCGATCAACCGCAGAGAG
GGAGGGAGTTACTTGA-CGACAGATCAGATGGGATCCGTGGTGGGCACGGCGGCGAGCGGCGTGGGCACGCTGCTCGGCG
GCGCCGTCGCCGCGCCCTTCAGGGCCATCCTCAGCGCGTCCTGCGAGGGCGTCTGCTCGGGGACGTGGGACGTGGCCTGC
TTCCTGGAGCACCTCTGCGCCGCCAGTCTGGCCAGGCTCTTCATGGTCATCGTCCTCACCTACGTCGTGCTCTTCTTCGC
CTACCTCGTGTGCAAGGCAGGGATCGTCCGCTGCGTGGCCAAGAACGCCTGCAAGGTCGCCGGGGCGGCGTGCTCCGGCT
GCTGCCACGCGCTGAAGGGATCGTCGTGCTTCCTCTGGCGCAAGCTGCGGGACACCAAGCGCGTGTACCACG---GCCGC
CGCCGGC------------GGCATCCGGACGTGGAGACGGGAGTTGGAGATTGGAGCTC---CGACGAGGAGAGCGACGG
CGATGGTGGCCACGGGCATGGTACAAGGAGGTGGGGCAGGGCGAGGGAGGGGTCGTCGTCGTCG------GTGAGGGAGA
GGAGGAAGGACAGGCTGCGCCGGTCGCTGCGCCTGAGGAGATTCACCTCCCACAAGGAGCAGTACGCCACGGCGAGAAGC
CATGGGGGCGGAAGGCATCACCGCGGCAGGGTCGGGGTGC------CGTCCACGTCGCTGCGTGTCGACGCCGGGAGGAA
GTTCAAGCGCGTCCGTACATAAACCGTCTTCAACT---TAGTTCAGATCATTTATCGGCTTTGGTAAAAAAAAT------
-----------------------------------------------TGCGGAAGTAGTGTGAGGAGAAATGTGTTGGAT
GTGTTGTAAAAACTCCTTCAAACCTGAGGGGGAGGTGTGTAAGAAGAAAGTGATACAGCATGTAATGGTAAGTTCGTCGC
AGCGAAGCCTAGCCAATAAAGATCATCACAAGAGTTTTTAATCAGTATCTTGATAACGGACTGTTCGGTAGTCGCATCTG
GCTG--------------TGCTCCATGCTTGGCGAAGAAGGCACCAGCAAATCGGTGAGATGTCT----TCCCACCTTAT
ACCACCGCCATGGCCATCAAGATACCGCTTATGTCTCACCTACAATTCAGGGCACGAGTCACTGAATTGTAGCATCCACA
ATATGCTGCCCTGGTGCTAGAGGCGACCGCACGCTGTTGCTGGCGCCATGAACCCCTTGTGTAAATATCAGCAGAACAGA
TGCTGATGCTGATGCTGATACTTTTAGAAAAGGTTTTTTGGTACCACCGGTTTGTAATAGGTTATACGCGTAGGACCAAA
TATTGA--------TGCAGTTTATCACTAAAGTATGATTTATTTATTTTTAATTTACTGTTCATACGGTGCAGATGAGCT
CGGGCTCAAAAATGAATATTCGAAAATTGCTTACATTTTGTAGTATCTTCTAACGGTTTCCTATGTCCTCTGCTTATTTC
AAATGGAAACAAGGCTGCCGCTGTGTACCAAGTCGTTCAATACTTATGATTTGTTCGTGGCATACCTGCGTTTGGCTGTA
ATTGCTGCCACTTGATGTTGACCGGACGCATTTCACTTGTGCAATTGCCAAAACCTGA-----GTTGATCATGTTTATAC
CTTGCCAAAATGCCG-AAGTTGGGTGGGAGGTTTTGCTGGAAACATGACACCATGCATGCAAA-TAAGCAAGGCGAGTAT
TTTCTCAAGATGGGCTCCTGAC--GTAACACAATGTTGATCAAACAGTAATAGATACCGTACATTAGTACAGT
>chr5B_9
--------TGGGTGCACTCGCTGACCGTAGTATCTTGATTCCAGTTCAAGTGTCGACAAACTTTATCGTCACAGAACGTT
AAGCTTGTTATATCTTTGGTTGTTGGATCATGGAATTCAGTAGTGAGGTTTCTCGTTGAACTTGGCATTGTGACCATGGC
AGCCATTCCGAGGTTGGTCTGGTCCAGTGCGGATTGGGATTTGCCCTCGGTGGTTGCAATGGCATGAAGGGC--------
-GTATGACATTGTCGGGTCGCCGAGTAGCGCCGGAGCCTGGAGAATGTAACTGGATCGTTAGCTTTCCCTTTTGTT-TTG
CGGGAATTGGTAAATGATGAAATTTGCACTTGAACCAACCTTAGTCTCAGGTTGGTTGCCCAAAGGTCGGTGAATTGGGC
AGAAGATCCAGGGAACTGTTTACTGTTCCTAGGTTCAGTGTCGTTCCCTGGTCCCCGGAGCAGTAGTAGTAACCTC----
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--------------------------------------------------------------AAATCATTTTGATATGAA
TACGGTTAAAATGGAGAGACAAAAAACACCAGTTTG-TTTCGTCATGAACAGCATGGCAAACTTTTTGCCACAAAGAACA
AATAAGAGGAAATGTTTATGTAGCAAAC------TTCGCCCTAGCAGATTCTTTCCAAATCGAAATGCGCATGAAAAAAA
C---TTTGTTTTAAAATGCTGTCTAAAGGTCAGTGAATTGGGCAAAAGATCCAGGGGACTGTTTACTGTCTAGTAACTAT
TCTGTCTCGTGCCCTGAAGC---------AGTAGTAGTAACCTGAC---GACGCGAGCCAACCAACGCGCAT----GCAT
GTCGCCAAAGGCAACTGCCGACGGTTTGGTACAAAATGGATTAACGATCCAAACCGACGCCATCGATCAACTGCAGA---
-GAGGGAGTTGCTTGC-CGACAGA-CAGATGGGGTCCGTGGTGGGCACGGCGGCGAGCGGCGTGGGCACGCTGCTCGGCG
ACGCCATCACCGCGCCGTTCAGGGCCATCCTCGGCGCGTCCTGCGAGGGCGTCTGCTCGGGGACGTGGGACGTGGCCTGC
TTCCTGGAGCACCTCTGCACCGCCAGCCTGGCCAGGCTCTTCATGGTCATCGTCCTCACCTACGTCGTGCTCTTCTTCGG
CTACCTCGTCTGCAAAGCGGGAATCGTCCGCTGCGTCGCCAAGAACGCCTGCAAGGTCGCCGGGGCGGCGTGCTCCGGCT
GCTGCCACGCGCTCAAGGGATCCTCGTGCTTCCTCTGGCGCAAGCTGCGGGACACCAAGCGCGTCTACCACG---GCCGC
CGCGGCCGCCGGCGGCGGTGGCCTCGGGACGTGGAGACGGGGGCGGGAGACTGGGGCTCCGACGACGAGGAGAGCGATGG
CTATGGTGGCCACGGCCATGGTGCGAGGAGGTGGGGCAGGGCGAGAGAGGGGTCGTCGTCGTCGTCGTCGGTGAGGGAGA
GGAGGAAGGACAGGCTGCGCCGGTCGCTGCGCCTGAGGAGACTCGTCTCCCACAAGGAGCAGTACGCCACGGCGAGGAGC
CATGGGGGCGGAAGGCATCACCGCGGCAGGGTCGTCGGGGTGCCGTCGTCCACGTCGCTGCGCGTCGACGCCGGGAGGAA
GTTCAAGCGCGTCCGTACATAAACCGTCTTCAAA----TAATTCAGATCATTTATCGGCTTTGGTTAAAAAAAGTGATTG
ATATTGCCAGCAAACTTCATCTTTGATCAAGATTCCTCAAAAAAAAATGCGGAAATAGTGCGAGGAGAAATGTGTTTGAT
GTGTTGTAGAAACTCCTTCGAACCTGAGGGGGAGGTCTGTAAGAAGAAAGTGATATAGCATGTGATAGTAAGTTCGTCGC
AGCGAAGCCCAGCCAATAAAGATCAGCACAAGAGTTTTTAATCGGTAT--------------------------------
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-----------------------------------------------------------------CTGCGTTTGGCTGTA
ATCGCTGCCACTTGATGTTGACCGGACGCATTTCACTTGTGCAATTGCCAAAACCTGACCTGAGTTGAACATGTT--TAC
CTTGCCAAAATGCGGCAAGTTGGGTGGGAGGTTCTGCTGAAAACATGACGCCATGCATGCCAACTAAGCAAGGCGAGTAT
TTTCTGAAGACAGACTCCTGACGTGTAACACAATGTTGATCAAACAGTAATAGATACTGTA------------
>chr5A_815
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--------------------------------------------------------------------TAC--TTTCTGT
TCTGTCTCGTGCCCTGAAGC---------AGCAGTAGTAGCCTGACCCTGACGCGAGCCAACCAGAGGTCCAGAGCGCAT
GCCACCAAAGGCAACCGCCGACGGTTTTGTACGAAATGGATTGACAATCCAAACAACCGTCGTCGATCAACTGCAGACAG
AGAGGGAGTTACTTCGACGACAGG-CAGATGGGATCCGTGGTGGGCACGGCGGCGAGCGGCGTGGGCACGCTGCTCGGCG
GCGCCGTCGCCGCGCCCTTCAGGGCCATCCTCGGCGCGTCCTGCGAGGGCGTCTGCTCGGGGACGTGGGACGTTGCCTGC
TTCCTGGAGCACCTCTGCGCCGCCAGCCTGGCCAGGCTCTTCATGGTCATCGTCCTCACCTACGTCGTGCTCTTCTTCGC
CTACCTCGTCTGCAAAGCCGGGATCGTCCGCTGCGTCGCCAAGAACGCCTGCAAGGTCGCCGGCGCCGCGTGCTCCGGCT
GCTGCCACGCACTGAAGGGATCCTCGTGCTTCCTCTGGCGCAAGCTGCGGGACACCAAGCGCGTGTACCATGGCCGCCGC
CGCCGGC------------GGCATCCGGACGTGGAGACGGGAGCGGGAGATTGGGGCTCCGACGAGGAGGAGAGCGACGG
CGATGGTGGCCACGGTCATGGTACAAGGAGGTGGGGCAGAGCTAGAGAGGGGTCGTCGTCGTCGT---CGGTGAGGGAGA
GGAGGAAGGACAGGCTGCGCCGGTCGCTGCGCCTCAGGAGACTCGTCTCGCACAAGGAGCAGTATGCTACGGCGAGGAGC
CATGGGGCCGGAAGGCACCACCGCGGCAGGGGCGGGGTGC------CGTCCACGTCGCTGCGTGTTGACGACGGGAGGAA
GTTTAAGCGCGTCCGTAGATAAACTGTCTTCAACGGAGTAGTTCAATTCATTTATCGGCTTTGGTAAAAGAAAATGCTTG
ATATCGTCAGCAAACTTCATCTTGGATGAAGATTCCTCAAAAAAAAGTGTGAAAATAGTGGAAGGAGAAATGTGTTTGAT
GTGTTGCTGAAACTTCTTCGAACCTGGGGTAAGGAGA---------------ATGCAACATATAATGGTAAGTTCGTCGT
AACGAAGCCCGATCTATAAAGGTCAGTACAAGAGTTTTCACCTCACTCAGAAAGCGGTGTTTTAATAAGGAGTACTCGCA
TCCACGAATGCTCATGCTTGCTTCACGCTTTGCCGAAAAGGCATTAGCAAATCGATGGGATGGGTTGTCTCACACCTTAT
ATCACCACCACGACCATCAAGAGGCCACTCATGTCTGCTGG---------------------------------------
--------------------------CCGAACGCTGTTGTTGGTGCCATGAACCCCTT----------------------
--------------------------------------------CACCGGTTTGTAACAAGTTACGCTCGTAGGACCAAA
TATTCAAAAATTGGTGCAGTTTATTTTTTA------------------TTAGTTTACTGTTCAAATGATGCAGATGAGCT
CGGGCTCGGAAACAAATATTCGAAAATTGTTTACCTTTTGTAGTATCTTCT----------TATGTCTTTTGCTTATTTC
AAATGGAAACAAGGCTGCCGCTGTGAACGAAGTCGATCAATACTTATGGTCTGTGTGGC---------------------
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>SNPs
SSSSSSSS---S----S-----S-------------------------------------------------S-------
---------S----------------------------------------------------------------------
-------------------------S-------S-------S--------------------------S---SSSSSSSS
S-----S-----S-------------------------S---------------S-----------S------SS-S---
------S-------------------------------------------------------------------------
-S--------------------------S--S----S------------------S-------S-S---------SSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--S-S--------SSS--
----SSSS----------------------------S----S-----------SS-----------S-----S-----S-
-SS--------------SSS-SSSS--SSSSSSS--S------S-S-S-----S--S--S-------S------S----S
SSSS--SS---S----S-S-----S------S-------S----------------S-S---------------------
--------S----------SSSSSSSSSS------------------------S-----------------S-SS-----
------------------------------------S--------------S-------------------S-----S--
S--------------S--------S-------------------------------------------------------
--------------------------------S-----------------------------------------------
--------------------------S-----------------------------------------------------
---------S-----S--S-----------------S-------------------------------------------
----------------------S---------------------------------------------------------
-------------------------------------------SS---------S-------------------------
---------------S-----------------------------S----------------------------------
-----------------------------------------S--SS------------------------------S---
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----------------------------------S--------------------------------------S------
------------------------------------------------------S-----S---------------S---
--------S----------S----------------S-------------------------------------------
---------S---------------S-----------------S----SSSS-SSSSS-SS-SSSSSSSSSSSS-SSSSS
S-SS------------------S--S----S--SS-S------SS---------S--S----SS-------S--------
-S----S---S-S---------SS--S--S------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSS---S---------S---S--------------SSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-------------S-S----SS-S------------
----S-------------------SSS-S-SSSSSSSSSSSSSSSSSS---S-----------S-S-S------------
-------SS---SS---------------S----S----------------SSSSSSSSSS------S-S----------
-------------------------S--S------S------------S-S---SS-SSSSSSSS---------------
--S-----------------------------------------------------------------S------SS---
-------------S-------------------S-----S---------S----------S-------------------
-----S----SS-S-------------------------------------------S---SSSSSSSSSSSS
>forward_616
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------------------------------------GCAGATTTCGCCACTTGGAC------------------------
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>reverse_2205
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--------------------------------------------ATTCAGGGCACGAGTCACTG----------------
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