Multiple sequence alignment - TraesCS5D01G420700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G420700 chr5D 100.000 3132 0 0 1 3132 481163256 481166387 0.000000e+00 5784.0
1 TraesCS5D01G420700 chr5D 86.207 290 31 7 1769 2053 481282631 481282916 3.920000e-79 305.0
2 TraesCS5D01G420700 chr5D 90.338 207 17 3 2634 2840 481283305 481283508 5.150000e-68 268.0
3 TraesCS5D01G420700 chr5D 87.293 181 13 7 2663 2840 481254186 481254359 6.850000e-47 198.0
4 TraesCS5D01G420700 chr5D 76.454 361 54 19 1173 1517 481185189 481185534 1.930000e-37 167.0
5 TraesCS5D01G420700 chr5D 82.203 118 16 5 1216 1330 481304376 481304491 2.570000e-16 97.1
6 TraesCS5D01G420700 chr5B 90.676 1523 91 26 1583 3080 589581071 589582567 0.000000e+00 1978.0
7 TraesCS5D01G420700 chr5B 87.565 579 41 20 4 563 589579085 589579651 2.630000e-180 641.0
8 TraesCS5D01G420700 chr5B 90.855 339 14 13 770 1100 589580208 589580537 3.710000e-119 438.0
9 TraesCS5D01G420700 chr5B 85.151 431 42 9 1137 1557 589580598 589581016 3.730000e-114 422.0
10 TraesCS5D01G420700 chr5B 90.826 218 13 1 2634 2851 589874875 589875085 5.110000e-73 285.0
11 TraesCS5D01G420700 chr5B 87.190 242 23 7 2600 2841 589683041 589683274 5.150000e-68 268.0
12 TraesCS5D01G420700 chr5B 82.203 118 16 5 1216 1330 589895731 589895846 2.570000e-16 97.1
13 TraesCS5D01G420700 chr5A 93.147 1255 57 14 1566 2805 600210382 600211622 0.000000e+00 1814.0
14 TraesCS5D01G420700 chr5A 89.452 730 45 14 846 1557 600209629 600210344 0.000000e+00 893.0
15 TraesCS5D01G420700 chr5A 90.672 461 26 9 22 475 600208803 600209253 5.780000e-167 597.0
16 TraesCS5D01G420700 chr5A 83.186 452 57 11 1834 2273 600346522 600346966 2.260000e-106 396.0
17 TraesCS5D01G420700 chr5A 88.406 207 10 5 2634 2840 600347208 600347400 1.450000e-58 237.0
18 TraesCS5D01G420700 chr5A 77.410 363 51 18 1173 1517 600238400 600238749 1.480000e-43 187.0
19 TraesCS5D01G420700 chr6D 83.239 352 33 7 789 1136 300648822 300649151 1.830000e-77 300.0
20 TraesCS5D01G420700 chr6D 87.547 265 22 3 1221 1474 300649279 300649543 2.360000e-76 296.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G420700 chr5D 481163256 481166387 3131 False 5784.000000 5784 100.000000 1 3132 1 chr5D.!!$F1 3131
1 TraesCS5D01G420700 chr5D 481282631 481283508 877 False 286.500000 305 88.272500 1769 2840 2 chr5D.!!$F5 1071
2 TraesCS5D01G420700 chr5B 589579085 589582567 3482 False 869.750000 1978 88.561750 4 3080 4 chr5B.!!$F4 3076
3 TraesCS5D01G420700 chr5A 600208803 600211622 2819 False 1101.333333 1814 91.090333 22 2805 3 chr5A.!!$F2 2783
4 TraesCS5D01G420700 chr5A 600346522 600347400 878 False 316.500000 396 85.796000 1834 2840 2 chr5A.!!$F3 1006
5 TraesCS5D01G420700 chr6D 300648822 300649543 721 False 298.000000 300 85.393000 789 1474 2 chr6D.!!$F1 685

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
735 770 0.03759 TCCCCAAGATGAACCAACCG 59.962 55.0 0.0 0.0 0.0 4.44 F
736 771 0.03759 CCCCAAGATGAACCAACCGA 59.962 55.0 0.0 0.0 0.0 4.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1557 2042 0.109132 GCTTGCGAATTGGACCCAAG 60.109 55.0 7.6 4.99 39.47 3.61 R
2584 3146 0.109723 CTTGGACGTTTTGGGGGAGA 59.890 55.0 0.0 0.00 0.00 3.71 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
91 92 2.362503 ATGGGTCGGCTCACTCGA 60.363 61.111 0.00 0.00 0.00 4.04
111 112 1.322936 ACACGTTTGCGCATTTTTGTG 59.677 42.857 12.75 17.78 42.83 3.33
157 159 4.676849 TTGCTCTTGGTTTTTGTTTTGC 57.323 36.364 0.00 0.00 0.00 3.68
172 185 8.856490 TTTTGTTTTGCTTTTGTTTGCTTTTA 57.144 23.077 0.00 0.00 0.00 1.52
175 188 8.038492 TGTTTTGCTTTTGTTTGCTTTTAGAT 57.962 26.923 0.00 0.00 0.00 1.98
176 189 8.510505 TGTTTTGCTTTTGTTTGCTTTTAGATT 58.489 25.926 0.00 0.00 0.00 2.40
179 192 8.892887 TTGCTTTTGTTTGCTTTTAGATTTTG 57.107 26.923 0.00 0.00 0.00 2.44
414 437 6.554334 TCTTTATGTACACTGGACTTTTGC 57.446 37.500 0.00 0.00 0.00 3.68
419 442 3.751175 TGTACACTGGACTTTTGCATAGC 59.249 43.478 0.00 0.00 0.00 2.97
420 443 1.806542 ACACTGGACTTTTGCATAGCG 59.193 47.619 0.00 0.00 0.00 4.26
433 456 3.851098 TGCATAGCGTGTAACACATACA 58.149 40.909 0.00 0.00 42.22 2.29
439 462 5.530519 AGCGTGTAACACATACAGATTTG 57.469 39.130 0.00 0.00 45.00 2.32
511 544 2.030540 GGTGAAAGGCCGACTAAAAACC 60.031 50.000 0.00 0.00 0.00 3.27
573 606 1.285950 GCCCGTTTGAGTTGGCTTC 59.714 57.895 0.00 0.00 40.77 3.86
575 608 1.574428 CCGTTTGAGTTGGCTTCCG 59.426 57.895 0.00 0.00 0.00 4.30
578 611 2.258013 TTTGAGTTGGCTTCCGGCG 61.258 57.895 0.00 0.00 42.94 6.46
601 636 4.109877 AGGCTCCCATATTTCTTGATGG 57.890 45.455 0.00 0.00 42.06 3.51
605 640 3.825014 CTCCCATATTTCTTGATGGCCTG 59.175 47.826 3.32 0.00 41.22 4.85
651 686 2.383527 CGCGTGTTCCAGCCTTCTC 61.384 63.158 0.00 0.00 0.00 2.87
652 687 2.035442 GCGTGTTCCAGCCTTCTCC 61.035 63.158 0.00 0.00 0.00 3.71
659 694 2.510238 CAGCCTTCTCCGGAAGCG 60.510 66.667 5.23 0.00 45.44 4.68
661 696 2.509561 GCCTTCTCCGGAAGCGTC 60.510 66.667 5.23 0.00 45.44 5.19
662 697 2.184579 CCTTCTCCGGAAGCGTCC 59.815 66.667 5.23 8.86 45.44 4.79
663 698 2.184579 CTTCTCCGGAAGCGTCCC 59.815 66.667 13.43 0.00 41.80 4.46
664 699 3.701604 CTTCTCCGGAAGCGTCCCG 62.702 68.421 13.43 10.08 46.10 5.14
696 731 2.972505 CCGCCGCCGCATATTCTT 60.973 61.111 0.00 0.00 34.03 2.52
697 732 2.542907 CCGCCGCCGCATATTCTTT 61.543 57.895 0.00 0.00 34.03 2.52
698 733 1.355210 CGCCGCCGCATATTCTTTT 59.645 52.632 0.00 0.00 34.03 2.27
699 734 0.657368 CGCCGCCGCATATTCTTTTC 60.657 55.000 0.00 0.00 34.03 2.29
700 735 0.663153 GCCGCCGCATATTCTTTTCT 59.337 50.000 0.00 0.00 34.03 2.52
701 736 1.065551 GCCGCCGCATATTCTTTTCTT 59.934 47.619 0.00 0.00 34.03 2.52
702 737 2.854805 GCCGCCGCATATTCTTTTCTTC 60.855 50.000 0.00 0.00 34.03 2.87
703 738 2.614057 CCGCCGCATATTCTTTTCTTCT 59.386 45.455 0.00 0.00 0.00 2.85
704 739 3.065371 CCGCCGCATATTCTTTTCTTCTT 59.935 43.478 0.00 0.00 0.00 2.52
705 740 4.274865 CGCCGCATATTCTTTTCTTCTTC 58.725 43.478 0.00 0.00 0.00 2.87
706 741 4.034510 CGCCGCATATTCTTTTCTTCTTCT 59.965 41.667 0.00 0.00 0.00 2.85
707 742 5.447818 CGCCGCATATTCTTTTCTTCTTCTT 60.448 40.000 0.00 0.00 0.00 2.52
708 743 5.968261 GCCGCATATTCTTTTCTTCTTCTTC 59.032 40.000 0.00 0.00 0.00 2.87
709 744 6.183360 GCCGCATATTCTTTTCTTCTTCTTCT 60.183 38.462 0.00 0.00 0.00 2.85
710 745 7.627300 GCCGCATATTCTTTTCTTCTTCTTCTT 60.627 37.037 0.00 0.00 0.00 2.52
711 746 7.907563 CCGCATATTCTTTTCTTCTTCTTCTTC 59.092 37.037 0.00 0.00 0.00 2.87
712 747 8.663911 CGCATATTCTTTTCTTCTTCTTCTTCT 58.336 33.333 0.00 0.00 0.00 2.85
718 753 8.669946 TCTTTTCTTCTTCTTCTTCTTCTTCC 57.330 34.615 0.00 0.00 0.00 3.46
719 754 7.717436 TCTTTTCTTCTTCTTCTTCTTCTTCCC 59.283 37.037 0.00 0.00 0.00 3.97
720 755 5.491323 TCTTCTTCTTCTTCTTCTTCCCC 57.509 43.478 0.00 0.00 0.00 4.81
721 756 4.907875 TCTTCTTCTTCTTCTTCTTCCCCA 59.092 41.667 0.00 0.00 0.00 4.96
722 757 5.369699 TCTTCTTCTTCTTCTTCTTCCCCAA 59.630 40.000 0.00 0.00 0.00 4.12
723 758 5.234466 TCTTCTTCTTCTTCTTCCCCAAG 57.766 43.478 0.00 0.00 0.00 3.61
724 759 4.907875 TCTTCTTCTTCTTCTTCCCCAAGA 59.092 41.667 0.00 0.00 36.82 3.02
725 760 5.549619 TCTTCTTCTTCTTCTTCCCCAAGAT 59.450 40.000 0.00 0.00 38.50 2.40
726 761 5.171339 TCTTCTTCTTCTTCCCCAAGATG 57.829 43.478 0.00 0.00 38.50 2.90
727 762 4.846367 TCTTCTTCTTCTTCCCCAAGATGA 59.154 41.667 0.00 0.00 39.75 2.92
728 763 5.310594 TCTTCTTCTTCTTCCCCAAGATGAA 59.689 40.000 10.80 10.80 44.58 2.57
729 764 4.911390 TCTTCTTCTTCCCCAAGATGAAC 58.089 43.478 8.30 0.00 43.13 3.18
730 765 3.721087 TCTTCTTCCCCAAGATGAACC 57.279 47.619 0.00 0.00 38.98 3.62
731 766 2.986019 TCTTCTTCCCCAAGATGAACCA 59.014 45.455 0.00 0.00 38.98 3.67
732 767 3.397618 TCTTCTTCCCCAAGATGAACCAA 59.602 43.478 0.00 0.00 38.98 3.67
733 768 3.154827 TCTTCCCCAAGATGAACCAAC 57.845 47.619 0.00 0.00 33.38 3.77
734 769 2.171003 CTTCCCCAAGATGAACCAACC 58.829 52.381 0.00 0.00 0.00 3.77
735 770 0.037590 TCCCCAAGATGAACCAACCG 59.962 55.000 0.00 0.00 0.00 4.44
736 771 0.037590 CCCCAAGATGAACCAACCGA 59.962 55.000 0.00 0.00 0.00 4.69
737 772 1.340991 CCCCAAGATGAACCAACCGAT 60.341 52.381 0.00 0.00 0.00 4.18
738 773 2.446435 CCCAAGATGAACCAACCGATT 58.554 47.619 0.00 0.00 0.00 3.34
739 774 2.825532 CCCAAGATGAACCAACCGATTT 59.174 45.455 0.00 0.00 0.00 2.17
740 775 3.119495 CCCAAGATGAACCAACCGATTTC 60.119 47.826 0.00 0.00 0.00 2.17
741 776 3.758554 CCAAGATGAACCAACCGATTTCT 59.241 43.478 0.00 0.00 0.00 2.52
742 777 4.142600 CCAAGATGAACCAACCGATTTCTC 60.143 45.833 0.00 0.00 0.00 2.87
743 778 4.286297 AGATGAACCAACCGATTTCTCA 57.714 40.909 0.00 0.00 0.00 3.27
744 779 4.848357 AGATGAACCAACCGATTTCTCAT 58.152 39.130 0.00 0.00 0.00 2.90
745 780 4.878397 AGATGAACCAACCGATTTCTCATC 59.122 41.667 0.00 0.00 38.52 2.92
746 781 4.286297 TGAACCAACCGATTTCTCATCT 57.714 40.909 0.00 0.00 0.00 2.90
747 782 4.651778 TGAACCAACCGATTTCTCATCTT 58.348 39.130 0.00 0.00 0.00 2.40
748 783 5.800296 TGAACCAACCGATTTCTCATCTTA 58.200 37.500 0.00 0.00 0.00 2.10
749 784 6.414732 TGAACCAACCGATTTCTCATCTTAT 58.585 36.000 0.00 0.00 0.00 1.73
750 785 7.561251 TGAACCAACCGATTTCTCATCTTATA 58.439 34.615 0.00 0.00 0.00 0.98
751 786 8.044309 TGAACCAACCGATTTCTCATCTTATAA 58.956 33.333 0.00 0.00 0.00 0.98
752 787 7.787725 ACCAACCGATTTCTCATCTTATAAC 57.212 36.000 0.00 0.00 0.00 1.89
753 788 6.479001 ACCAACCGATTTCTCATCTTATAACG 59.521 38.462 0.00 0.00 0.00 3.18
754 789 6.700081 CCAACCGATTTCTCATCTTATAACGA 59.300 38.462 0.00 0.00 0.00 3.85
755 790 7.223971 CCAACCGATTTCTCATCTTATAACGAA 59.776 37.037 0.00 0.00 0.00 3.85
756 791 8.600625 CAACCGATTTCTCATCTTATAACGAAA 58.399 33.333 0.00 0.00 0.00 3.46
757 792 8.712285 ACCGATTTCTCATCTTATAACGAAAA 57.288 30.769 0.00 0.00 0.00 2.29
758 793 8.818057 ACCGATTTCTCATCTTATAACGAAAAG 58.182 33.333 0.00 0.00 0.00 2.27
759 794 9.031360 CCGATTTCTCATCTTATAACGAAAAGA 57.969 33.333 0.00 0.00 36.24 2.52
1054 1453 1.736126 TCTCGCGTCGTTCTAGTGAAT 59.264 47.619 5.77 0.00 34.40 2.57
1067 1466 2.028484 TGAATATCCGGCGTCGCC 59.972 61.111 26.69 26.69 46.75 5.54
1191 1652 2.734723 CGGGACAGCGACAGTGTG 60.735 66.667 0.00 0.00 0.00 3.82
1194 1655 2.598632 GGACAGCGACAGTGTGTGC 61.599 63.158 0.00 4.52 0.00 4.57
1198 1659 2.237751 AGCGACAGTGTGTGCGAAC 61.238 57.895 0.00 0.00 32.41 3.95
1203 1664 0.814010 ACAGTGTGTGCGAACCTTCC 60.814 55.000 0.00 0.00 0.00 3.46
1204 1665 0.532862 CAGTGTGTGCGAACCTTCCT 60.533 55.000 0.00 0.00 0.00 3.36
1205 1666 0.532862 AGTGTGTGCGAACCTTCCTG 60.533 55.000 0.00 0.00 0.00 3.86
1206 1667 1.891919 TGTGTGCGAACCTTCCTGC 60.892 57.895 0.00 0.00 0.00 4.85
1207 1668 2.281484 TGTGCGAACCTTCCTGCC 60.281 61.111 0.00 0.00 0.00 4.85
1208 1669 3.423154 GTGCGAACCTTCCTGCCG 61.423 66.667 0.00 0.00 0.00 5.69
1209 1670 4.697756 TGCGAACCTTCCTGCCGG 62.698 66.667 0.00 0.00 0.00 6.13
1210 1671 4.699522 GCGAACCTTCCTGCCGGT 62.700 66.667 1.90 0.00 34.27 5.28
1211 1672 2.434359 CGAACCTTCCTGCCGGTC 60.434 66.667 1.90 0.00 31.87 4.79
1212 1673 2.046217 GAACCTTCCTGCCGGTCC 60.046 66.667 1.90 0.00 31.87 4.46
1213 1674 2.852075 AACCTTCCTGCCGGTCCA 60.852 61.111 1.90 0.00 31.87 4.02
1214 1675 2.198304 GAACCTTCCTGCCGGTCCAT 62.198 60.000 1.90 0.00 31.87 3.41
1238 1711 2.445682 CCAATTCGGGATGGGGTTTA 57.554 50.000 0.00 0.00 32.87 2.01
1276 1749 4.078516 GCGACCGGGCCAGTACTT 62.079 66.667 6.32 0.00 0.00 2.24
1445 1929 2.623889 AGTGCTAGACAACGACAGTCTT 59.376 45.455 12.69 0.00 43.47 3.01
1449 1933 3.671164 GCTAGACAACGACAGTCTTCCTC 60.671 52.174 12.69 0.00 43.47 3.71
1464 1949 0.968901 TCCTCGCTGGGTTCGTGTAT 60.969 55.000 0.00 0.00 36.20 2.29
1493 1978 4.148838 TGGATTTAGGAACTTGTGGTTGG 58.851 43.478 0.00 0.00 41.75 3.77
1571 2085 4.654091 ATTATTGCTTGGGTCCAATTCG 57.346 40.909 2.59 0.00 35.20 3.34
1618 2132 9.671279 TCAGAGTATGATTCTGAATTTTTAGCA 57.329 29.630 4.11 0.00 45.87 3.49
1631 2145 5.741388 ATTTTTAGCACTGTCATCGATCC 57.259 39.130 0.00 0.00 0.00 3.36
1750 2276 2.124695 GCCTTTCGAATCCGGGCT 60.125 61.111 18.29 0.00 37.56 5.19
1783 2309 4.439057 GTGTGCGTAAATTCTATCCTGGA 58.561 43.478 0.00 0.00 0.00 3.86
1884 2410 9.614792 GTCCTTGTTAACCTGTATCTTGATAAT 57.385 33.333 2.48 0.00 0.00 1.28
1927 2454 4.436050 GCGACTGAAATGATGTACAGTTGG 60.436 45.833 0.33 0.00 42.45 3.77
1972 2499 6.142817 GCTGAAAATATGAAACTGTCGTTGT 58.857 36.000 0.00 0.00 32.65 3.32
2200 2739 3.798202 AGGTAGTGATTCGCTTTCCATC 58.202 45.455 17.34 0.00 0.00 3.51
2253 2792 3.684305 TGCATCTGAACAAAGATACACCG 59.316 43.478 0.00 0.00 35.09 4.94
2324 2865 4.081420 AGGCTCCAGATATTATGCTAACCG 60.081 45.833 0.00 0.00 0.00 4.44
2325 2866 4.322801 GGCTCCAGATATTATGCTAACCGT 60.323 45.833 0.00 0.00 0.00 4.83
2326 2867 4.865365 GCTCCAGATATTATGCTAACCGTC 59.135 45.833 0.00 0.00 0.00 4.79
2327 2868 5.055642 TCCAGATATTATGCTAACCGTCG 57.944 43.478 0.00 0.00 0.00 5.12
2402 2943 5.119694 TGTTGCTTACTGATGTGTGTGTAA 58.880 37.500 0.00 0.00 0.00 2.41
2404 2945 5.208463 TGCTTACTGATGTGTGTGTAAGA 57.792 39.130 13.69 0.18 42.36 2.10
2495 3057 7.224753 TCGTTAGAAAATCCTTCATACATCTGC 59.775 37.037 0.00 0.00 0.00 4.26
2533 3095 4.846779 TGTAACAATTGTCCAGCCTTTC 57.153 40.909 12.39 0.00 0.00 2.62
2553 3115 7.333672 GCCTTTCGTTTCTTCTATTCTAGGAAA 59.666 37.037 0.00 0.00 0.00 3.13
2603 3175 0.109723 TCTCCCCCAAAACGTCCAAG 59.890 55.000 0.00 0.00 0.00 3.61
2613 3185 0.178068 AACGTCCAAGTCAGCACACT 59.822 50.000 0.00 0.00 0.00 3.55
2812 3384 8.709386 AAGAAGCATATATATTGTAAGCCTCG 57.291 34.615 0.00 0.00 0.00 4.63
2816 3388 9.587772 AAGCATATATATTGTAAGCCTCGTTAG 57.412 33.333 0.00 0.00 0.00 2.34
2826 3398 3.180891 AGCCTCGTTAGCTATTTGACC 57.819 47.619 0.00 0.00 39.29 4.02
2881 3456 4.587262 TGCGGAGTTCAGGCTATATCTTAA 59.413 41.667 0.00 0.00 0.00 1.85
2891 3466 8.677148 TCAGGCTATATCTTAACAAAATGACC 57.323 34.615 0.00 0.00 0.00 4.02
2941 3516 6.753279 AGCGCGACTTGTAACAGTTAAATATA 59.247 34.615 12.10 0.00 0.00 0.86
2942 3517 7.437267 AGCGCGACTTGTAACAGTTAAATATAT 59.563 33.333 12.10 0.00 0.00 0.86
2960 3535 2.169832 ATGCGCTGTTTCACTACAGT 57.830 45.000 9.73 0.00 45.76 3.55
3004 3579 5.869579 TCAATTAATCTATCAGCCCCTGTC 58.130 41.667 0.00 0.00 32.61 3.51
3014 3589 0.252375 AGCCCCTGTCCATGCAAATT 60.252 50.000 0.00 0.00 0.00 1.82
3016 3591 0.538118 CCCCTGTCCATGCAAATTGG 59.462 55.000 0.00 0.00 35.45 3.16
3027 3602 5.479724 TCCATGCAAATTGGAAACACAGATA 59.520 36.000 5.01 0.00 40.29 1.98
3075 3650 3.766545 TCAGCCTGGCAGAAATAACTTT 58.233 40.909 22.65 0.00 0.00 2.66
3080 3655 4.559153 CCTGGCAGAAATAACTTTTGTGG 58.441 43.478 17.94 0.00 0.00 4.17
3081 3656 4.280677 CCTGGCAGAAATAACTTTTGTGGA 59.719 41.667 17.94 0.00 0.00 4.02
3082 3657 5.047092 CCTGGCAGAAATAACTTTTGTGGAT 60.047 40.000 17.94 0.00 0.00 3.41
3083 3658 5.782047 TGGCAGAAATAACTTTTGTGGATG 58.218 37.500 0.00 0.00 0.00 3.51
3084 3659 4.627035 GGCAGAAATAACTTTTGTGGATGC 59.373 41.667 0.00 0.00 0.00 3.91
3085 3660 5.229423 GCAGAAATAACTTTTGTGGATGCA 58.771 37.500 0.00 0.00 0.00 3.96
3086 3661 5.346822 GCAGAAATAACTTTTGTGGATGCAG 59.653 40.000 0.00 0.00 0.00 4.41
3087 3662 5.346822 CAGAAATAACTTTTGTGGATGCAGC 59.653 40.000 0.00 0.00 0.00 5.25
3088 3663 4.870123 AATAACTTTTGTGGATGCAGCA 57.130 36.364 3.51 0.00 0.00 4.41
3089 3664 4.870123 ATAACTTTTGTGGATGCAGCAA 57.130 36.364 3.51 0.00 0.00 3.91
3090 3665 2.806608 ACTTTTGTGGATGCAGCAAG 57.193 45.000 3.51 0.30 0.00 4.01
3091 3666 2.034124 ACTTTTGTGGATGCAGCAAGT 58.966 42.857 3.51 1.03 0.00 3.16
3092 3667 2.431782 ACTTTTGTGGATGCAGCAAGTT 59.568 40.909 3.51 0.00 0.00 2.66
3093 3668 3.118665 ACTTTTGTGGATGCAGCAAGTTT 60.119 39.130 3.51 0.00 0.00 2.66
3094 3669 2.512485 TTGTGGATGCAGCAAGTTTG 57.488 45.000 3.51 0.00 0.00 2.93
3095 3670 1.689984 TGTGGATGCAGCAAGTTTGA 58.310 45.000 3.51 0.00 0.00 2.69
3096 3671 2.030371 TGTGGATGCAGCAAGTTTGAA 58.970 42.857 3.51 0.00 0.00 2.69
3097 3672 2.429971 TGTGGATGCAGCAAGTTTGAAA 59.570 40.909 3.51 0.00 0.00 2.69
3098 3673 3.118847 TGTGGATGCAGCAAGTTTGAAAA 60.119 39.130 3.51 0.00 0.00 2.29
3099 3674 4.060205 GTGGATGCAGCAAGTTTGAAAAT 58.940 39.130 3.51 0.00 0.00 1.82
3100 3675 4.512571 GTGGATGCAGCAAGTTTGAAAATT 59.487 37.500 3.51 0.00 0.00 1.82
3101 3676 5.007921 GTGGATGCAGCAAGTTTGAAAATTT 59.992 36.000 3.51 0.00 0.00 1.82
3102 3677 5.236911 TGGATGCAGCAAGTTTGAAAATTTC 59.763 36.000 3.51 0.00 0.00 2.17
3103 3678 5.236911 GGATGCAGCAAGTTTGAAAATTTCA 59.763 36.000 3.51 4.03 38.04 2.69
3104 3679 5.721876 TGCAGCAAGTTTGAAAATTTCAG 57.278 34.783 8.51 0.00 41.38 3.02
3105 3680 5.177326 TGCAGCAAGTTTGAAAATTTCAGT 58.823 33.333 8.51 0.00 41.38 3.41
3106 3681 5.063691 TGCAGCAAGTTTGAAAATTTCAGTG 59.936 36.000 8.51 7.29 41.38 3.66
3107 3682 5.291614 GCAGCAAGTTTGAAAATTTCAGTGA 59.708 36.000 8.51 0.00 41.38 3.41
3108 3683 6.183360 GCAGCAAGTTTGAAAATTTCAGTGAA 60.183 34.615 8.51 0.08 41.38 3.18
3109 3684 7.175410 CAGCAAGTTTGAAAATTTCAGTGAAC 58.825 34.615 4.68 10.35 41.38 3.18
3110 3685 6.873076 AGCAAGTTTGAAAATTTCAGTGAACA 59.127 30.769 18.31 0.00 41.38 3.18
3111 3686 7.387397 AGCAAGTTTGAAAATTTCAGTGAACAA 59.613 29.630 18.31 3.44 41.38 2.83
3112 3687 8.177013 GCAAGTTTGAAAATTTCAGTGAACAAT 58.823 29.630 18.31 8.45 41.38 2.71
3115 3690 9.434420 AGTTTGAAAATTTCAGTGAACAATTCA 57.566 25.926 18.31 16.54 41.38 2.57
3122 3697 9.528018 AAATTTCAGTGAACAATTCAATTACGT 57.472 25.926 4.68 0.00 42.15 3.57
3123 3698 7.906611 TTTCAGTGAACAATTCAATTACGTG 57.093 32.000 4.68 0.00 42.15 4.49
3124 3699 5.996219 TCAGTGAACAATTCAATTACGTGG 58.004 37.500 0.00 0.00 42.15 4.94
3125 3700 5.049060 TCAGTGAACAATTCAATTACGTGGG 60.049 40.000 0.00 0.00 42.15 4.61
3126 3701 3.917985 GTGAACAATTCAATTACGTGGGC 59.082 43.478 0.00 0.00 42.15 5.36
3127 3702 3.570125 TGAACAATTCAATTACGTGGGCA 59.430 39.130 0.00 0.00 36.59 5.36
3128 3703 4.219507 TGAACAATTCAATTACGTGGGCAT 59.780 37.500 0.00 0.00 36.59 4.40
3129 3704 4.370364 ACAATTCAATTACGTGGGCATC 57.630 40.909 0.00 0.00 0.00 3.91
3130 3705 3.181501 ACAATTCAATTACGTGGGCATCG 60.182 43.478 0.00 0.00 0.00 3.84
3131 3706 2.388310 TTCAATTACGTGGGCATCGA 57.612 45.000 0.00 0.00 0.00 3.59
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 7.237209 AGGATTTTCCAAGATTCTTTTCAGG 57.763 36.000 0.00 0.00 39.61 3.86
1 2 9.798994 CATAGGATTTTCCAAGATTCTTTTCAG 57.201 33.333 0.00 0.00 39.61 3.02
2 3 8.752187 CCATAGGATTTTCCAAGATTCTTTTCA 58.248 33.333 0.00 0.00 39.61 2.69
91 92 1.322936 CACAAAAATGCGCAAACGTGT 59.677 42.857 17.11 14.25 42.83 4.49
157 159 7.984391 ACCCAAAATCTAAAAGCAAACAAAAG 58.016 30.769 0.00 0.00 0.00 2.27
414 437 6.828502 AATCTGTATGTGTTACACGCTATG 57.171 37.500 11.07 1.68 35.86 2.23
419 442 8.555166 AAAAACAAATCTGTATGTGTTACACG 57.445 30.769 11.07 0.00 41.77 4.49
511 544 4.272748 ACGGGTTTCTCTTTTTCTTCTTCG 59.727 41.667 0.00 0.00 0.00 3.79
573 606 2.397413 AATATGGGAGCCTTCGCCGG 62.397 60.000 0.00 0.00 35.52 6.13
575 608 1.202818 AGAAATATGGGAGCCTTCGCC 60.203 52.381 0.00 0.00 35.52 5.54
578 611 4.522022 CCATCAAGAAATATGGGAGCCTTC 59.478 45.833 0.00 0.00 39.23 3.46
588 623 3.569491 CCACCAGGCCATCAAGAAATAT 58.431 45.455 5.01 0.00 0.00 1.28
605 640 2.434359 CGTTCGAGAAGGCCCACC 60.434 66.667 0.00 0.00 0.00 4.61
633 668 2.357517 AGAAGGCTGGAACACGCG 60.358 61.111 3.53 3.53 34.27 6.01
679 714 2.058829 AAAAGAATATGCGGCGGCGG 62.059 55.000 33.02 14.77 44.10 6.13
680 715 0.657368 GAAAAGAATATGCGGCGGCG 60.657 55.000 28.70 28.70 44.10 6.46
681 716 0.663153 AGAAAAGAATATGCGGCGGC 59.337 50.000 9.78 9.68 40.52 6.53
682 717 2.614057 AGAAGAAAAGAATATGCGGCGG 59.386 45.455 9.78 0.00 0.00 6.13
683 718 3.951979 AGAAGAAAAGAATATGCGGCG 57.048 42.857 0.51 0.51 0.00 6.46
684 719 5.491635 AGAAGAAGAAAAGAATATGCGGC 57.508 39.130 0.00 0.00 0.00 6.53
685 720 7.313951 AGAAGAAGAAGAAAAGAATATGCGG 57.686 36.000 0.00 0.00 0.00 5.69
686 721 8.663911 AGAAGAAGAAGAAGAAAAGAATATGCG 58.336 33.333 0.00 0.00 0.00 4.73
692 727 9.114952 GGAAGAAGAAGAAGAAGAAGAAAAGAA 57.885 33.333 0.00 0.00 0.00 2.52
693 728 7.717436 GGGAAGAAGAAGAAGAAGAAGAAAAGA 59.283 37.037 0.00 0.00 0.00 2.52
694 729 7.040755 GGGGAAGAAGAAGAAGAAGAAGAAAAG 60.041 40.741 0.00 0.00 0.00 2.27
695 730 6.773200 GGGGAAGAAGAAGAAGAAGAAGAAAA 59.227 38.462 0.00 0.00 0.00 2.29
696 731 6.126478 TGGGGAAGAAGAAGAAGAAGAAGAAA 60.126 38.462 0.00 0.00 0.00 2.52
697 732 5.369699 TGGGGAAGAAGAAGAAGAAGAAGAA 59.630 40.000 0.00 0.00 0.00 2.52
698 733 4.907875 TGGGGAAGAAGAAGAAGAAGAAGA 59.092 41.667 0.00 0.00 0.00 2.87
699 734 5.234466 TGGGGAAGAAGAAGAAGAAGAAG 57.766 43.478 0.00 0.00 0.00 2.85
700 735 5.369699 TCTTGGGGAAGAAGAAGAAGAAGAA 59.630 40.000 0.00 0.00 0.00 2.52
701 736 4.907875 TCTTGGGGAAGAAGAAGAAGAAGA 59.092 41.667 0.00 0.00 0.00 2.87
702 737 5.234466 TCTTGGGGAAGAAGAAGAAGAAG 57.766 43.478 0.00 0.00 0.00 2.85
703 738 5.310594 TCATCTTGGGGAAGAAGAAGAAGAA 59.689 40.000 0.00 0.00 33.22 2.52
704 739 4.846367 TCATCTTGGGGAAGAAGAAGAAGA 59.154 41.667 0.00 0.00 33.22 2.87
705 740 5.171339 TCATCTTGGGGAAGAAGAAGAAG 57.829 43.478 0.00 0.00 33.22 2.85
706 741 5.316987 GTTCATCTTGGGGAAGAAGAAGAA 58.683 41.667 0.00 0.00 37.24 2.52
707 742 4.263506 GGTTCATCTTGGGGAAGAAGAAGA 60.264 45.833 0.00 0.00 37.24 2.87
708 743 4.013050 GGTTCATCTTGGGGAAGAAGAAG 58.987 47.826 0.00 0.00 37.24 2.85
709 744 3.397618 TGGTTCATCTTGGGGAAGAAGAA 59.602 43.478 0.00 0.00 35.08 2.52
710 745 2.986019 TGGTTCATCTTGGGGAAGAAGA 59.014 45.455 0.00 0.00 33.18 2.87
711 746 3.439857 TGGTTCATCTTGGGGAAGAAG 57.560 47.619 0.00 0.00 33.18 2.85
712 747 3.496331 GTTGGTTCATCTTGGGGAAGAA 58.504 45.455 0.00 0.00 31.77 2.52
713 748 2.225017 GGTTGGTTCATCTTGGGGAAGA 60.225 50.000 0.00 0.00 0.00 2.87
714 749 2.171003 GGTTGGTTCATCTTGGGGAAG 58.829 52.381 0.00 0.00 0.00 3.46
715 750 1.546773 CGGTTGGTTCATCTTGGGGAA 60.547 52.381 0.00 0.00 0.00 3.97
716 751 0.037590 CGGTTGGTTCATCTTGGGGA 59.962 55.000 0.00 0.00 0.00 4.81
717 752 0.037590 TCGGTTGGTTCATCTTGGGG 59.962 55.000 0.00 0.00 0.00 4.96
718 753 2.128771 ATCGGTTGGTTCATCTTGGG 57.871 50.000 0.00 0.00 0.00 4.12
719 754 3.758554 AGAAATCGGTTGGTTCATCTTGG 59.241 43.478 0.00 0.00 0.00 3.61
720 755 4.455533 TGAGAAATCGGTTGGTTCATCTTG 59.544 41.667 0.00 0.00 0.00 3.02
721 756 4.651778 TGAGAAATCGGTTGGTTCATCTT 58.348 39.130 0.00 0.00 0.00 2.40
722 757 4.286297 TGAGAAATCGGTTGGTTCATCT 57.714 40.909 0.00 0.00 0.00 2.90
723 758 4.878397 AGATGAGAAATCGGTTGGTTCATC 59.122 41.667 16.37 16.37 39.61 2.92
724 759 4.848357 AGATGAGAAATCGGTTGGTTCAT 58.152 39.130 3.13 3.13 0.00 2.57
725 760 4.286297 AGATGAGAAATCGGTTGGTTCA 57.714 40.909 0.00 0.00 0.00 3.18
726 761 6.927294 ATAAGATGAGAAATCGGTTGGTTC 57.073 37.500 0.00 0.00 0.00 3.62
727 762 7.011109 CGTTATAAGATGAGAAATCGGTTGGTT 59.989 37.037 0.00 0.00 0.00 3.67
728 763 6.479001 CGTTATAAGATGAGAAATCGGTTGGT 59.521 38.462 0.00 0.00 0.00 3.67
729 764 6.700081 TCGTTATAAGATGAGAAATCGGTTGG 59.300 38.462 0.00 0.00 0.00 3.77
730 765 7.694388 TCGTTATAAGATGAGAAATCGGTTG 57.306 36.000 0.00 0.00 0.00 3.77
731 766 8.712285 TTTCGTTATAAGATGAGAAATCGGTT 57.288 30.769 0.00 0.00 0.00 4.44
732 767 8.712285 TTTTCGTTATAAGATGAGAAATCGGT 57.288 30.769 0.00 0.00 0.00 4.69
733 768 9.031360 TCTTTTCGTTATAAGATGAGAAATCGG 57.969 33.333 0.00 0.00 0.00 4.18
775 1158 0.691332 GAGGGGTCGGTTTCCTTCTT 59.309 55.000 0.00 0.00 0.00 2.52
997 1396 2.768344 AGGAGGGCGTACCATGGG 60.768 66.667 18.09 0.00 43.89 4.00
1067 1466 4.052229 ACGGCAGGAGGAACGACG 62.052 66.667 0.00 0.00 0.00 5.12
1191 1652 3.423154 CGGCAGGAAGGTTCGCAC 61.423 66.667 0.00 0.00 0.00 5.34
1194 1655 2.434359 GACCGGCAGGAAGGTTCG 60.434 66.667 10.86 0.00 41.51 3.95
1198 1659 2.190578 GATGGACCGGCAGGAAGG 59.809 66.667 10.86 0.00 41.02 3.46
1203 1664 4.864334 GGGCAGATGGACCGGCAG 62.864 72.222 0.00 0.00 32.42 4.85
1209 1670 2.408333 CCGAATTGGGCAGATGGAC 58.592 57.895 0.00 0.00 0.00 4.02
1210 1671 4.984194 CCGAATTGGGCAGATGGA 57.016 55.556 0.00 0.00 0.00 3.41
1238 1711 4.695231 CGTCGACGGCGGAACAGT 62.695 66.667 29.70 0.00 38.28 3.55
1270 1743 1.961180 CTAGCAGCCCCGCAAGTACT 61.961 60.000 0.00 0.00 0.00 2.73
1445 1929 0.968901 ATACACGAACCCAGCGAGGA 60.969 55.000 1.68 0.00 41.22 3.71
1449 1933 0.172578 TCAGATACACGAACCCAGCG 59.827 55.000 0.00 0.00 0.00 5.18
1464 1949 5.939883 CACAAGTTCCTAAATCCATGTCAGA 59.060 40.000 0.00 0.00 0.00 3.27
1493 1978 4.770010 TGGACCCAACCAAATGATTTAGTC 59.230 41.667 0.00 0.00 36.96 2.59
1542 2027 6.252995 TGGACCCAAGCAATAATAAAGAAGT 58.747 36.000 0.00 0.00 0.00 3.01
1557 2042 0.109132 GCTTGCGAATTGGACCCAAG 60.109 55.000 7.60 4.99 39.47 3.61
1558 2043 1.531739 GGCTTGCGAATTGGACCCAA 61.532 55.000 3.70 3.70 40.47 4.12
1562 2047 1.666189 GAGTAGGCTTGCGAATTGGAC 59.334 52.381 0.00 0.00 0.00 4.02
1564 2049 1.737838 TGAGTAGGCTTGCGAATTGG 58.262 50.000 0.00 0.00 0.00 3.16
1571 2085 2.636830 ACATGACATGAGTAGGCTTGC 58.363 47.619 22.19 0.00 0.00 4.01
1618 2132 2.670939 TCCAGATGGATCGATGACAGT 58.329 47.619 0.54 0.00 39.78 3.55
1631 2145 4.080919 TGGTACCAGAGAATGTTCCAGATG 60.081 45.833 11.60 0.00 0.00 2.90
1705 2231 3.211865 TGCCTGAATCATGAATCTGCTC 58.788 45.455 19.63 11.54 0.00 4.26
1783 2309 2.705127 GCTCATCTCCCTCTCAAATCCT 59.295 50.000 0.00 0.00 0.00 3.24
1884 2410 2.677836 GCACAGGATTTCAGCGACATTA 59.322 45.455 0.00 0.00 0.00 1.90
1885 2411 1.470098 GCACAGGATTTCAGCGACATT 59.530 47.619 0.00 0.00 0.00 2.71
1886 2412 1.089920 GCACAGGATTTCAGCGACAT 58.910 50.000 0.00 0.00 0.00 3.06
1927 2454 7.362662 TCAGCATCTCAATGTAACTCAAAAAC 58.637 34.615 0.00 0.00 35.18 2.43
1972 2499 0.937304 GTGCAGCACGTTCTCTGAAA 59.063 50.000 10.47 0.00 32.26 2.69
2132 2671 4.470602 TCCATCTCGTATGTATCCACTGT 58.529 43.478 1.02 0.00 0.00 3.55
2136 2675 7.776618 ATAACTTCCATCTCGTATGTATCCA 57.223 36.000 1.02 0.00 0.00 3.41
2137 2676 9.490379 AAAATAACTTCCATCTCGTATGTATCC 57.510 33.333 1.02 0.00 0.00 2.59
2139 2678 8.774586 GCAAAATAACTTCCATCTCGTATGTAT 58.225 33.333 1.02 0.00 0.00 2.29
2141 2680 6.597672 TGCAAAATAACTTCCATCTCGTATGT 59.402 34.615 0.00 0.00 0.00 2.29
2200 2739 4.083855 AGCACAACACTGTTAATGATGTCG 60.084 41.667 8.79 0.00 31.39 4.35
2253 2792 7.819900 ACATCTCAAGTTACTCTGTTTCCATAC 59.180 37.037 0.00 0.00 0.00 2.39
2275 2815 4.335594 GGGTAAACTTACATCAGCCACATC 59.664 45.833 2.25 0.00 35.37 3.06
2324 2865 1.531149 CCAATGGTCACAACAGACGAC 59.469 52.381 0.00 0.00 39.42 4.34
2325 2866 1.542328 CCCAATGGTCACAACAGACGA 60.542 52.381 0.00 0.00 39.42 4.20
2326 2867 0.874390 CCCAATGGTCACAACAGACG 59.126 55.000 0.00 0.00 39.42 4.18
2327 2868 0.598065 GCCCAATGGTCACAACAGAC 59.402 55.000 0.00 0.00 37.80 3.51
2473 3033 8.267183 TCAAGCAGATGTATGAAGGATTTTCTA 58.733 33.333 0.00 0.00 0.00 2.10
2481 3041 8.095792 AGATAAGATCAAGCAGATGTATGAAGG 58.904 37.037 0.00 0.00 37.00 3.46
2482 3042 9.142515 GAGATAAGATCAAGCAGATGTATGAAG 57.857 37.037 0.00 0.00 37.00 3.02
2493 3055 7.386059 TGTTACAACAGAGATAAGATCAAGCA 58.614 34.615 0.00 0.00 34.30 3.91
2533 3095 7.758613 GGAGTTTCCTAGAATAGAAGAAACG 57.241 40.000 10.76 0.00 45.88 3.60
2578 3140 4.227754 TGGACGTTTTGGGGGAGATTTATA 59.772 41.667 0.00 0.00 0.00 0.98
2584 3146 0.109723 CTTGGACGTTTTGGGGGAGA 59.890 55.000 0.00 0.00 0.00 3.71
2603 3175 5.808042 ATAAATCATCACAGTGTGCTGAC 57.192 39.130 27.21 0.00 40.61 3.51
2613 3185 8.054152 ACACTGCAACAATATAAATCATCACA 57.946 30.769 0.00 0.00 0.00 3.58
2812 3384 3.538634 ACGGGAGGTCAAATAGCTAAC 57.461 47.619 0.00 0.00 35.60 2.34
2826 3398 1.376037 GCCTGAACTGGAACGGGAG 60.376 63.158 0.00 0.00 40.47 4.30
2858 3430 2.598565 AGATATAGCCTGAACTCCGCA 58.401 47.619 0.00 0.00 0.00 5.69
2891 3466 9.726232 CTGTGGATGAATATTTGATAAACAGTG 57.274 33.333 0.00 0.00 0.00 3.66
2899 3474 3.058708 CGCGCTGTGGATGAATATTTGAT 60.059 43.478 5.56 0.00 0.00 2.57
2908 3483 1.737735 CAAGTCGCGCTGTGGATGA 60.738 57.895 5.56 0.00 0.00 2.92
2909 3484 0.735978 TACAAGTCGCGCTGTGGATG 60.736 55.000 15.65 7.73 0.00 3.51
2984 3559 4.242811 TGGACAGGGGCTGATAGATTAAT 58.757 43.478 0.00 0.00 35.18 1.40
3004 3579 3.992643 TCTGTGTTTCCAATTTGCATGG 58.007 40.909 0.00 0.00 39.41 3.66
3014 3589 5.781210 TGCACAAAATATCTGTGTTTCCA 57.219 34.783 15.59 6.06 44.92 3.53
3027 3602 8.143193 TGACAAGAGTTCATATTTGCACAAAAT 58.857 29.630 0.00 0.00 41.47 1.82
3034 3609 5.970023 GCTGATGACAAGAGTTCATATTTGC 59.030 40.000 0.00 0.00 0.00 3.68
3036 3611 6.318144 CAGGCTGATGACAAGAGTTCATATTT 59.682 38.462 9.42 0.00 0.00 1.40
3039 3614 4.383444 CCAGGCTGATGACAAGAGTTCATA 60.383 45.833 17.94 0.00 0.00 2.15
3041 3616 2.289882 CCAGGCTGATGACAAGAGTTCA 60.290 50.000 17.94 0.00 0.00 3.18
3075 3650 2.030371 TCAAACTTGCTGCATCCACAA 58.970 42.857 1.84 0.00 0.00 3.33
3080 3655 6.018507 ACTGAAATTTTCAAACTTGCTGCATC 60.019 34.615 12.62 0.00 39.58 3.91
3081 3656 5.818857 ACTGAAATTTTCAAACTTGCTGCAT 59.181 32.000 12.62 0.00 39.58 3.96
3082 3657 5.063691 CACTGAAATTTTCAAACTTGCTGCA 59.936 36.000 12.62 0.00 39.58 4.41
3083 3658 5.291614 TCACTGAAATTTTCAAACTTGCTGC 59.708 36.000 12.62 0.00 39.58 5.25
3084 3659 6.890663 TCACTGAAATTTTCAAACTTGCTG 57.109 33.333 12.62 2.07 39.58 4.41
3085 3660 6.873076 TGTTCACTGAAATTTTCAAACTTGCT 59.127 30.769 18.75 0.00 39.58 3.91
3086 3661 7.059448 TGTTCACTGAAATTTTCAAACTTGC 57.941 32.000 18.75 8.46 39.58 4.01
3089 3664 9.434420 TGAATTGTTCACTGAAATTTTCAAACT 57.566 25.926 18.75 6.17 35.34 2.66
3096 3671 9.528018 ACGTAATTGAATTGTTCACTGAAATTT 57.472 25.926 0.00 0.00 39.87 1.82
3097 3672 8.967218 CACGTAATTGAATTGTTCACTGAAATT 58.033 29.630 0.00 0.00 39.87 1.82
3098 3673 7.594758 CCACGTAATTGAATTGTTCACTGAAAT 59.405 33.333 0.00 0.00 39.87 2.17
3099 3674 6.915300 CCACGTAATTGAATTGTTCACTGAAA 59.085 34.615 0.00 0.00 39.87 2.69
3100 3675 6.434596 CCACGTAATTGAATTGTTCACTGAA 58.565 36.000 0.00 0.00 39.87 3.02
3101 3676 5.049060 CCCACGTAATTGAATTGTTCACTGA 60.049 40.000 0.00 0.00 39.87 3.41
3102 3677 5.153513 CCCACGTAATTGAATTGTTCACTG 58.846 41.667 0.00 0.00 39.87 3.66
3103 3678 4.320935 GCCCACGTAATTGAATTGTTCACT 60.321 41.667 0.00 0.00 39.87 3.41
3104 3679 3.917985 GCCCACGTAATTGAATTGTTCAC 59.082 43.478 0.00 0.00 39.87 3.18
3105 3680 3.570125 TGCCCACGTAATTGAATTGTTCA 59.430 39.130 0.00 0.00 38.04 3.18
3106 3681 4.167554 TGCCCACGTAATTGAATTGTTC 57.832 40.909 0.00 0.00 0.00 3.18
3107 3682 4.674101 CGATGCCCACGTAATTGAATTGTT 60.674 41.667 0.00 0.00 0.00 2.83
3108 3683 3.181501 CGATGCCCACGTAATTGAATTGT 60.182 43.478 0.00 0.00 0.00 2.71
3109 3684 3.064682 TCGATGCCCACGTAATTGAATTG 59.935 43.478 0.00 0.00 0.00 2.32
3110 3685 3.275143 TCGATGCCCACGTAATTGAATT 58.725 40.909 0.00 0.00 0.00 2.17
3111 3686 2.912771 TCGATGCCCACGTAATTGAAT 58.087 42.857 0.00 0.00 0.00 2.57
3112 3687 2.388310 TCGATGCCCACGTAATTGAA 57.612 45.000 0.00 0.00 0.00 2.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.