Multiple sequence alignment - TraesCS5D01G420400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G420400 chr5D 100.000 3299 0 0 1 3299 480980145 480976847 0.000000e+00 6093.0
1 TraesCS5D01G420400 chr5D 97.721 746 14 3 1 745 357374106 357373363 0.000000e+00 1280.0
2 TraesCS5D01G420400 chr5D 85.145 276 23 10 2485 2751 447627096 447626830 1.950000e-67 267.0
3 TraesCS5D01G420400 chr5D 88.194 144 12 5 2653 2791 313138341 313138198 2.040000e-37 167.0
4 TraesCS5D01G420400 chr5D 92.135 89 6 1 2483 2570 102366921 102366833 1.240000e-24 124.0
5 TraesCS5D01G420400 chr5B 94.435 1725 68 13 759 2466 589457243 589455530 0.000000e+00 2628.0
6 TraesCS5D01G420400 chr5B 85.618 744 76 22 1 742 378502984 378502270 0.000000e+00 752.0
7 TraesCS5D01G420400 chr5A 93.717 1719 69 18 759 2463 600141130 600139437 0.000000e+00 2540.0
8 TraesCS5D01G420400 chr5A 86.100 259 28 7 2872 3124 68796664 68796920 4.190000e-69 272.0
9 TraesCS5D01G420400 chr5A 100.000 46 0 0 3143 3188 600139318 600139273 5.870000e-13 86.1
10 TraesCS5D01G420400 chr5A 94.444 36 1 1 3264 3299 600139269 600139235 2.000000e-03 54.7
11 TraesCS5D01G420400 chr1D 89.528 487 44 7 1 485 83940825 83940344 7.830000e-171 610.0
12 TraesCS5D01G420400 chr1D 93.023 86 5 1 2569 2654 122836886 122836802 1.240000e-24 124.0
13 TraesCS5D01G420400 chr1D 95.000 60 2 1 3222 3280 254480934 254480875 3.510000e-15 93.5
14 TraesCS5D01G420400 chr1B 85.316 538 64 8 8 543 581694 581170 2.900000e-150 542.0
15 TraesCS5D01G420400 chr1B 86.458 192 15 2 533 724 136963113 136962933 2.010000e-47 200.0
16 TraesCS5D01G420400 chr1B 92.045 88 5 2 2567 2654 411560289 411560374 4.470000e-24 122.0
17 TraesCS5D01G420400 chr2D 89.297 327 28 7 1 323 643850054 643850377 1.430000e-108 403.0
18 TraesCS5D01G420400 chr2D 87.425 334 34 6 413 745 643850418 643850744 8.640000e-101 377.0
19 TraesCS5D01G420400 chr2D 89.781 137 11 2 2653 2789 557219182 557219049 4.380000e-39 172.0
20 TraesCS5D01G420400 chr2D 89.286 140 11 4 2653 2788 607701868 607701729 4.380000e-39 172.0
21 TraesCS5D01G420400 chr2D 90.909 110 9 1 2464 2572 107675796 107675687 2.650000e-31 147.0
22 TraesCS5D01G420400 chr2D 95.349 86 4 0 1596 1681 623330034 623329949 1.600000e-28 137.0
23 TraesCS5D01G420400 chr2D 91.209 91 7 1 2567 2657 638323167 638323078 4.470000e-24 122.0
24 TraesCS5D01G420400 chr2D 87.912 91 10 1 2483 2572 420983386 420983476 4.500000e-19 106.0
25 TraesCS5D01G420400 chr2D 96.610 59 1 1 3223 3280 628292556 628292614 2.710000e-16 97.1
26 TraesCS5D01G420400 chr2D 98.148 54 0 1 3222 3274 359630939 359630992 3.510000e-15 93.5
27 TraesCS5D01G420400 chr2D 95.000 60 2 1 3222 3280 643857298 643857239 3.510000e-15 93.5
28 TraesCS5D01G420400 chr2D 90.323 62 6 0 1256 1317 607600349 607600288 7.590000e-12 82.4
29 TraesCS5D01G420400 chr2D 97.619 42 1 0 1275 1316 623330380 623330339 4.570000e-09 73.1
30 TraesCS5D01G420400 chr2D 97.500 40 1 0 1538 1577 623330074 623330035 5.910000e-08 69.4
31 TraesCS5D01G420400 chr2D 97.222 36 1 0 2754 2789 107675554 107675519 9.880000e-06 62.1
32 TraesCS5D01G420400 chr2D 97.222 36 1 0 2754 2789 172735504 172735539 9.880000e-06 62.1
33 TraesCS5D01G420400 chr2D 97.222 36 1 0 2754 2789 358591851 358591886 9.880000e-06 62.1
34 TraesCS5D01G420400 chr2D 100.000 32 0 0 415 446 637437435 637437404 3.560000e-05 60.2
35 TraesCS5D01G420400 chr2A 94.505 182 10 0 2886 3067 548648461 548648280 6.970000e-72 281.0
36 TraesCS5D01G420400 chr2A 92.708 192 10 4 2878 3067 179798540 179798351 1.170000e-69 274.0
37 TraesCS5D01G420400 chr2A 86.345 249 24 8 2881 3124 57927716 57927959 2.520000e-66 263.0
38 TraesCS5D01G420400 chr2A 89.623 106 10 1 2466 2570 690534052 690533947 2.070000e-27 134.0
39 TraesCS5D01G420400 chr2A 94.186 86 4 1 2569 2654 568412790 568412706 2.670000e-26 130.0
40 TraesCS5D01G420400 chr2A 93.023 86 5 1 2569 2654 10843299 10843215 1.240000e-24 124.0
41 TraesCS5D01G420400 chr2A 92.135 89 6 1 2571 2659 750549828 750549741 1.240000e-24 124.0
42 TraesCS5D01G420400 chr2A 100.000 35 0 0 2754 2788 532074171 532074205 7.640000e-07 65.8
43 TraesCS5D01G420400 chr4A 94.475 181 10 0 2887 3067 125401629 125401809 2.510000e-71 279.0
44 TraesCS5D01G420400 chr4A 94.944 178 9 0 2890 3067 266937545 266937368 2.510000e-71 279.0
45 TraesCS5D01G420400 chr4A 78.662 314 55 8 340 651 583720447 583720144 7.220000e-47 198.0
46 TraesCS5D01G420400 chr1A 94.475 181 10 0 2887 3067 143496650 143496830 2.510000e-71 279.0
47 TraesCS5D01G420400 chr1A 93.011 186 13 0 2882 3067 60368036 60367851 4.190000e-69 272.0
48 TraesCS5D01G420400 chr1A 98.148 54 0 1 3222 3274 236559624 236559677 3.510000e-15 93.5
49 TraesCS5D01G420400 chr6A 93.478 184 12 0 2884 3067 548409550 548409733 1.170000e-69 274.0
50 TraesCS5D01G420400 chr6A 88.571 140 9 4 2656 2788 220375918 220375779 2.630000e-36 163.0
51 TraesCS5D01G420400 chr6A 92.035 113 7 2 2460 2570 448312761 448312649 1.230000e-34 158.0
52 TraesCS5D01G420400 chr3A 93.923 181 11 0 2887 3067 466507185 466507005 1.170000e-69 274.0
53 TraesCS5D01G420400 chr3A 86.792 106 13 1 2466 2570 204126186 204126081 2.080000e-22 117.0
54 TraesCS5D01G420400 chr6D 92.143 140 9 2 2651 2788 260045469 260045330 2.600000e-46 196.0
55 TraesCS5D01G420400 chr6D 90.977 133 9 2 2656 2786 67545152 67545021 3.380000e-40 176.0
56 TraesCS5D01G420400 chr6D 92.222 90 5 2 2569 2657 3274435 3274347 3.460000e-25 126.0
57 TraesCS5D01G420400 chr6D 90.909 88 8 0 2466 2553 457453474 457453387 5.780000e-23 119.0
58 TraesCS5D01G420400 chr7D 95.327 107 5 0 2645 2751 289256031 289256137 1.570000e-38 171.0
59 TraesCS5D01G420400 chr7D 93.103 116 5 1 2639 2751 49765880 49765765 2.040000e-37 167.0
60 TraesCS5D01G420400 chr7D 89.189 111 11 1 2462 2571 557084146 557084036 1.600000e-28 137.0
61 TraesCS5D01G420400 chr7D 98.148 54 0 1 3222 3274 105411203 105411256 3.510000e-15 93.5
62 TraesCS5D01G420400 chr7A 93.258 89 5 1 2483 2570 108822359 108822271 2.670000e-26 130.0
63 TraesCS5D01G420400 chr7A 97.297 37 1 0 2754 2790 336832535 336832571 2.750000e-06 63.9
64 TraesCS5D01G420400 chr3B 91.398 93 7 1 2562 2654 341224300 341224391 3.460000e-25 126.0
65 TraesCS5D01G420400 chr3B 94.915 59 2 1 3223 3280 201496957 201496899 1.260000e-14 91.6
66 TraesCS5D01G420400 chr3B 94.872 39 2 0 410 448 55402954 55402992 9.880000e-06 62.1
67 TraesCS5D01G420400 chr3D 92.135 89 6 1 2483 2570 539666303 539666215 1.240000e-24 124.0
68 TraesCS5D01G420400 chr3D 98.148 54 0 1 3222 3274 24150228 24150281 3.510000e-15 93.5
69 TraesCS5D01G420400 chr4B 84.071 113 12 5 2464 2570 623406173 623406285 1.620000e-18 104.0
70 TraesCS5D01G420400 chr2B 94.915 59 2 1 3223 3280 474938805 474938747 1.260000e-14 91.6
71 TraesCS5D01G420400 chr2B 91.111 45 3 1 2744 2788 675460941 675460898 3.560000e-05 60.2
72 TraesCS5D01G420400 chr4D 80.328 122 11 4 2461 2569 96052128 96052007 2.730000e-11 80.5
73 TraesCS5D01G420400 chr6B 85.294 68 6 2 415 478 515092994 515092927 2.120000e-07 67.6
74 TraesCS5D01G420400 chr7B 100.000 33 0 0 412 444 11099882 11099914 9.880000e-06 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G420400 chr5D 480976847 480980145 3298 True 6093.0 6093 100.000000 1 3299 1 chr5D.!!$R5 3298
1 TraesCS5D01G420400 chr5D 357373363 357374106 743 True 1280.0 1280 97.721000 1 745 1 chr5D.!!$R3 744
2 TraesCS5D01G420400 chr5B 589455530 589457243 1713 True 2628.0 2628 94.435000 759 2466 1 chr5B.!!$R2 1707
3 TraesCS5D01G420400 chr5B 378502270 378502984 714 True 752.0 752 85.618000 1 742 1 chr5B.!!$R1 741
4 TraesCS5D01G420400 chr5A 600139235 600141130 1895 True 893.6 2540 96.053667 759 3299 3 chr5A.!!$R1 2540
5 TraesCS5D01G420400 chr1B 581170 581694 524 True 542.0 542 85.316000 8 543 1 chr1B.!!$R1 535
6 TraesCS5D01G420400 chr2D 643850054 643850744 690 False 390.0 403 88.361000 1 745 2 chr2D.!!$F6 744

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
857 873 0.171903 TTTCTACGCTACCGGAGTGC 59.828 55.0 9.46 8.33 45.72 4.4 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2808 2838 0.096976 TTCCTACGCGCGTGTAGTAC 59.903 55.0 41.33 12.61 40.17 2.73 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
107 110 5.873164 AGTTAACAGCCCAGTACTTTAATCG 59.127 40.000 8.61 0.00 0.00 3.34
288 292 2.025727 CGACGCCCCGAGTCATAC 59.974 66.667 0.00 0.00 38.46 2.39
400 405 7.262048 TCAAATCTGTCCACACTTTAAAAACC 58.738 34.615 0.00 0.00 0.00 3.27
408 413 0.953727 ACTTTAAAAACCGTCCGGGC 59.046 50.000 10.91 0.00 40.62 6.13
419 424 1.067213 CCGTCCGGGCATTTTCAAAAT 60.067 47.619 6.96 0.00 0.00 1.82
687 694 8.330466 TCTAAATTCCTCGCTTTGTAAATGAA 57.670 30.769 0.00 0.00 0.00 2.57
724 731 2.037367 AGTGGTAGGAGCTGGCGA 59.963 61.111 0.00 0.00 0.00 5.54
745 753 4.927782 TGGGTGCGTGGTGCTGAC 62.928 66.667 0.00 0.00 46.63 3.51
746 754 4.927782 GGGTGCGTGGTGCTGACA 62.928 66.667 0.00 0.00 46.63 3.58
747 755 2.669569 GGTGCGTGGTGCTGACAT 60.670 61.111 0.00 0.00 46.63 3.06
748 756 1.375396 GGTGCGTGGTGCTGACATA 60.375 57.895 0.00 0.00 46.63 2.29
749 757 1.361668 GGTGCGTGGTGCTGACATAG 61.362 60.000 0.00 0.00 46.63 2.23
750 758 0.670546 GTGCGTGGTGCTGACATAGT 60.671 55.000 0.00 0.00 46.63 2.12
751 759 0.389817 TGCGTGGTGCTGACATAGTC 60.390 55.000 0.00 0.00 46.63 2.59
752 760 0.389817 GCGTGGTGCTGACATAGTCA 60.390 55.000 0.00 0.00 40.50 3.41
753 761 1.350193 CGTGGTGCTGACATAGTCAC 58.650 55.000 0.00 0.00 37.67 3.67
754 762 1.336795 CGTGGTGCTGACATAGTCACA 60.337 52.381 0.00 0.00 37.67 3.58
755 763 2.069273 GTGGTGCTGACATAGTCACAC 58.931 52.381 16.97 16.97 40.36 3.82
756 764 1.726853 GGTGCTGACATAGTCACACC 58.273 55.000 23.11 23.11 46.21 4.16
757 765 1.676014 GGTGCTGACATAGTCACACCC 60.676 57.143 24.97 15.40 46.34 4.61
845 861 1.133790 AGAACCCGGTCGATTTCTACG 59.866 52.381 0.00 0.00 0.00 3.51
851 867 1.751552 GGTCGATTTCTACGCTACCG 58.248 55.000 0.00 0.00 41.14 4.02
852 868 1.598924 GGTCGATTTCTACGCTACCGG 60.599 57.143 0.00 0.00 39.22 5.28
853 869 1.331756 GTCGATTTCTACGCTACCGGA 59.668 52.381 9.46 0.00 39.22 5.14
854 870 1.600957 TCGATTTCTACGCTACCGGAG 59.399 52.381 9.46 1.84 46.96 4.63
855 871 1.332997 CGATTTCTACGCTACCGGAGT 59.667 52.381 9.46 5.07 45.72 3.85
857 873 0.171903 TTTCTACGCTACCGGAGTGC 59.828 55.000 9.46 8.33 45.72 4.40
858 874 0.961857 TTCTACGCTACCGGAGTGCA 60.962 55.000 9.46 0.00 45.72 4.57
859 875 0.750546 TCTACGCTACCGGAGTGCAT 60.751 55.000 9.46 0.00 45.72 3.96
931 947 0.811281 TTTCGATCTGCTCTGCTCGA 59.189 50.000 0.00 0.00 38.28 4.04
1035 1052 2.275748 TCGACCAGCGAGGATCCT 59.724 61.111 16.13 16.13 45.59 3.24
1919 1936 2.435059 GGAGCTGCTTCCACGTCC 60.435 66.667 2.53 0.00 37.20 4.79
1928 1945 1.284982 CTTCCACGTCCGCTGACAAG 61.285 60.000 9.06 0.92 41.85 3.16
1931 1948 3.923864 ACGTCCGCTGACAAGGCA 61.924 61.111 9.06 0.00 41.85 4.75
1934 1951 4.680237 TCCGCTGACAAGGCACGG 62.680 66.667 9.65 9.65 45.15 4.94
2142 2168 1.302511 GCCGGTGGCTCAAGAAGAA 60.303 57.895 1.90 0.00 46.69 2.52
2294 2320 4.946038 CGGAGGGGTCGCATTTTA 57.054 55.556 0.00 0.00 0.00 1.52
2300 2326 3.279434 GAGGGGTCGCATTTTATTGACT 58.721 45.455 0.00 0.00 0.00 3.41
2323 2349 0.102120 CTTTGGTTGGTTGCTCGCAA 59.898 50.000 0.00 0.00 0.00 4.85
2325 2351 1.034838 TTGGTTGGTTGCTCGCAAGT 61.035 50.000 4.31 0.00 36.52 3.16
2386 2413 6.274001 AGTCGTGTGAATGCTATTAATTCG 57.726 37.500 0.00 0.00 36.93 3.34
2388 2415 6.312918 AGTCGTGTGAATGCTATTAATTCGTT 59.687 34.615 0.00 0.00 36.93 3.85
2455 2485 2.118683 CAAATGTGTGTTGAACTGCCG 58.881 47.619 0.00 0.00 0.00 5.69
2466 2496 4.113354 GTTGAACTGCCGAGACCTATTAG 58.887 47.826 0.00 0.00 0.00 1.73
2467 2497 3.628008 TGAACTGCCGAGACCTATTAGA 58.372 45.455 0.00 0.00 0.00 2.10
2468 2498 3.380637 TGAACTGCCGAGACCTATTAGAC 59.619 47.826 0.00 0.00 0.00 2.59
2469 2499 3.300239 ACTGCCGAGACCTATTAGACT 57.700 47.619 0.00 0.00 0.00 3.24
2470 2500 4.434545 ACTGCCGAGACCTATTAGACTA 57.565 45.455 0.00 0.00 0.00 2.59
2471 2501 4.136051 ACTGCCGAGACCTATTAGACTAC 58.864 47.826 0.00 0.00 0.00 2.73
2472 2502 3.484407 TGCCGAGACCTATTAGACTACC 58.516 50.000 0.00 0.00 0.00 3.18
2473 2503 2.819019 GCCGAGACCTATTAGACTACCC 59.181 54.545 0.00 0.00 0.00 3.69
2474 2504 3.749954 GCCGAGACCTATTAGACTACCCA 60.750 52.174 0.00 0.00 0.00 4.51
2475 2505 3.819902 CCGAGACCTATTAGACTACCCAC 59.180 52.174 0.00 0.00 0.00 4.61
2476 2506 4.458397 CGAGACCTATTAGACTACCCACA 58.542 47.826 0.00 0.00 0.00 4.17
2477 2507 4.515944 CGAGACCTATTAGACTACCCACAG 59.484 50.000 0.00 0.00 0.00 3.66
2478 2508 5.447757 GAGACCTATTAGACTACCCACAGT 58.552 45.833 0.00 0.00 0.00 3.55
2479 2509 5.202004 AGACCTATTAGACTACCCACAGTG 58.798 45.833 0.00 0.00 0.00 3.66
2480 2510 4.287552 ACCTATTAGACTACCCACAGTGG 58.712 47.826 13.35 13.35 37.25 4.00
2492 2522 2.699954 CCACAGTGGGAGTAACATCAC 58.300 52.381 12.40 0.00 32.67 3.06
2493 2523 2.038426 CCACAGTGGGAGTAACATCACA 59.962 50.000 12.40 0.00 32.67 3.58
2499 2529 3.937814 TGGGAGTAACATCACACATGTC 58.062 45.455 0.00 0.00 0.00 3.06
2500 2530 3.582647 TGGGAGTAACATCACACATGTCT 59.417 43.478 0.00 0.00 0.00 3.41
2501 2531 4.775253 TGGGAGTAACATCACACATGTCTA 59.225 41.667 0.00 0.00 0.00 2.59
2502 2532 5.105351 TGGGAGTAACATCACACATGTCTAG 60.105 44.000 0.00 0.00 0.00 2.43
2503 2533 5.127194 GGGAGTAACATCACACATGTCTAGA 59.873 44.000 0.00 0.00 0.00 2.43
2504 2534 6.183360 GGGAGTAACATCACACATGTCTAGAT 60.183 42.308 0.00 0.00 0.00 1.98
2505 2535 7.014326 GGGAGTAACATCACACATGTCTAGATA 59.986 40.741 0.00 0.00 0.00 1.98
2506 2536 8.414003 GGAGTAACATCACACATGTCTAGATAA 58.586 37.037 0.00 0.00 0.00 1.75
2507 2537 9.803315 GAGTAACATCACACATGTCTAGATAAA 57.197 33.333 0.00 0.00 0.00 1.40
2521 2551 9.664332 ATGTCTAGATAAAATAGATGATGTGGC 57.336 33.333 0.00 0.00 32.15 5.01
2522 2552 8.650490 TGTCTAGATAAAATAGATGATGTGGCA 58.350 33.333 0.00 0.00 32.15 4.92
2523 2553 9.494271 GTCTAGATAAAATAGATGATGTGGCAA 57.506 33.333 0.00 0.00 32.15 4.52
2536 2566 9.976511 AGATGATGTGGCAAATAATAAATGAAG 57.023 29.630 0.00 0.00 0.00 3.02
2537 2567 9.970395 GATGATGTGGCAAATAATAAATGAAGA 57.030 29.630 0.00 0.00 0.00 2.87
2570 2600 9.866798 AAAAAGTGGTACATAGCTAGTTACTAC 57.133 33.333 17.00 17.00 44.52 2.73
2571 2601 8.820153 AAAGTGGTACATAGCTAGTTACTACT 57.180 34.615 19.72 19.72 44.52 2.57
2572 2602 8.449251 AAGTGGTACATAGCTAGTTACTACTC 57.551 38.462 23.01 7.00 44.52 2.59
2573 2603 6.997476 AGTGGTACATAGCTAGTTACTACTCC 59.003 42.308 19.72 5.10 44.52 3.85
2574 2604 6.206438 GTGGTACATAGCTAGTTACTACTCCC 59.794 46.154 17.26 3.26 44.52 4.30
2575 2605 6.102321 TGGTACATAGCTAGTTACTACTCCCT 59.898 42.308 12.15 0.00 35.78 4.20
2576 2606 6.654582 GGTACATAGCTAGTTACTACTCCCTC 59.345 46.154 12.15 0.00 35.78 4.30
2577 2607 5.633117 ACATAGCTAGTTACTACTCCCTCC 58.367 45.833 0.00 0.00 35.78 4.30
2578 2608 3.211718 AGCTAGTTACTACTCCCTCCG 57.788 52.381 0.00 0.00 35.78 4.63
2579 2609 2.509131 AGCTAGTTACTACTCCCTCCGT 59.491 50.000 0.00 0.00 35.78 4.69
2580 2610 2.877786 GCTAGTTACTACTCCCTCCGTC 59.122 54.545 0.00 0.00 35.78 4.79
2581 2611 3.433456 GCTAGTTACTACTCCCTCCGTCT 60.433 52.174 0.00 0.00 35.78 4.18
2582 2612 3.280197 AGTTACTACTCCCTCCGTCTC 57.720 52.381 0.00 0.00 0.00 3.36
2583 2613 2.575279 AGTTACTACTCCCTCCGTCTCA 59.425 50.000 0.00 0.00 0.00 3.27
2584 2614 3.202595 AGTTACTACTCCCTCCGTCTCAT 59.797 47.826 0.00 0.00 0.00 2.90
2585 2615 2.060050 ACTACTCCCTCCGTCTCATG 57.940 55.000 0.00 0.00 0.00 3.07
2586 2616 1.564818 ACTACTCCCTCCGTCTCATGA 59.435 52.381 0.00 0.00 0.00 3.07
2587 2617 2.175931 ACTACTCCCTCCGTCTCATGAT 59.824 50.000 0.00 0.00 0.00 2.45
2588 2618 1.407936 ACTCCCTCCGTCTCATGATG 58.592 55.000 0.00 0.00 0.00 3.07
2589 2619 1.342474 ACTCCCTCCGTCTCATGATGT 60.342 52.381 0.00 0.00 0.00 3.06
2590 2620 2.091830 ACTCCCTCCGTCTCATGATGTA 60.092 50.000 0.00 0.00 0.00 2.29
2591 2621 2.959030 CTCCCTCCGTCTCATGATGTAA 59.041 50.000 0.00 0.00 0.00 2.41
2592 2622 2.959030 TCCCTCCGTCTCATGATGTAAG 59.041 50.000 0.00 0.00 0.00 2.34
2593 2623 2.959030 CCCTCCGTCTCATGATGTAAGA 59.041 50.000 0.00 0.00 0.00 2.10
2594 2624 3.243569 CCCTCCGTCTCATGATGTAAGAC 60.244 52.174 0.00 4.65 36.82 3.01
2629 2659 7.768807 ACTAGACTAGTGTCAAAGAATGTCT 57.231 36.000 14.47 0.00 45.20 3.41
2630 2660 8.184304 ACTAGACTAGTGTCAAAGAATGTCTT 57.816 34.615 14.47 0.00 45.20 3.01
2631 2661 9.298250 ACTAGACTAGTGTCAAAGAATGTCTTA 57.702 33.333 14.47 0.00 45.20 2.10
2632 2662 9.562583 CTAGACTAGTGTCAAAGAATGTCTTAC 57.437 37.037 0.00 0.00 45.20 2.34
2633 2663 7.952671 AGACTAGTGTCAAAGAATGTCTTACA 58.047 34.615 0.00 0.00 45.20 2.41
2634 2664 8.589338 AGACTAGTGTCAAAGAATGTCTTACAT 58.411 33.333 0.00 0.00 45.20 2.29
2635 2665 9.209175 GACTAGTGTCAAAGAATGTCTTACATT 57.791 33.333 0.00 5.01 45.09 2.71
2646 2676 5.623956 ATGTCTTACATTTATGGGACGGA 57.376 39.130 0.00 0.00 34.67 4.69
2647 2677 5.018539 TGTCTTACATTTATGGGACGGAG 57.981 43.478 0.00 0.00 32.66 4.63
2648 2678 4.141801 TGTCTTACATTTATGGGACGGAGG 60.142 45.833 0.00 0.00 32.66 4.30
2649 2679 3.389983 TCTTACATTTATGGGACGGAGGG 59.610 47.826 0.00 0.00 0.00 4.30
2650 2680 1.887797 ACATTTATGGGACGGAGGGA 58.112 50.000 0.00 0.00 0.00 4.20
2651 2681 1.768870 ACATTTATGGGACGGAGGGAG 59.231 52.381 0.00 0.00 0.00 4.30
2652 2682 1.768870 CATTTATGGGACGGAGGGAGT 59.231 52.381 0.00 0.00 0.00 3.85
2653 2683 2.852714 TTTATGGGACGGAGGGAGTA 57.147 50.000 0.00 0.00 0.00 2.59
2654 2684 2.077687 TTATGGGACGGAGGGAGTAC 57.922 55.000 0.00 0.00 0.00 2.73
2655 2685 1.229131 TATGGGACGGAGGGAGTACT 58.771 55.000 0.00 0.00 0.00 2.73
2656 2686 1.229131 ATGGGACGGAGGGAGTACTA 58.771 55.000 0.00 0.00 0.00 1.82
2657 2687 0.549950 TGGGACGGAGGGAGTACTAG 59.450 60.000 0.00 0.00 0.00 2.57
2658 2688 0.550432 GGGACGGAGGGAGTACTAGT 59.450 60.000 0.00 0.00 0.00 2.57
2659 2689 1.771255 GGGACGGAGGGAGTACTAGTA 59.229 57.143 0.00 0.00 0.00 1.82
2660 2690 2.224499 GGGACGGAGGGAGTACTAGTAG 60.224 59.091 1.87 0.00 0.00 2.57
2661 2691 2.224499 GGACGGAGGGAGTACTAGTAGG 60.224 59.091 1.87 0.00 0.00 3.18
2662 2692 2.703007 GACGGAGGGAGTACTAGTAGGA 59.297 54.545 1.87 0.00 0.00 2.94
2663 2693 2.705127 ACGGAGGGAGTACTAGTAGGAG 59.295 54.545 1.87 0.00 0.00 3.69
2664 2694 2.705127 CGGAGGGAGTACTAGTAGGAGT 59.295 54.545 1.87 0.00 0.00 3.85
2665 2695 3.900601 CGGAGGGAGTACTAGTAGGAGTA 59.099 52.174 1.87 0.00 0.00 2.59
2666 2696 4.346418 CGGAGGGAGTACTAGTAGGAGTAA 59.654 50.000 1.87 0.00 33.74 2.24
2667 2697 5.620206 GGAGGGAGTACTAGTAGGAGTAAC 58.380 50.000 1.87 0.00 33.74 2.50
2668 2698 5.131809 GGAGGGAGTACTAGTAGGAGTAACA 59.868 48.000 1.87 0.00 33.74 2.41
2669 2699 6.183361 GGAGGGAGTACTAGTAGGAGTAACAT 60.183 46.154 1.87 0.00 33.74 2.71
2670 2700 6.840527 AGGGAGTACTAGTAGGAGTAACATC 58.159 44.000 1.87 0.00 33.74 3.06
2671 2701 6.389278 AGGGAGTACTAGTAGGAGTAACATCA 59.611 42.308 1.87 0.00 33.74 3.07
2672 2702 6.486320 GGGAGTACTAGTAGGAGTAACATCAC 59.514 46.154 1.87 0.00 33.74 3.06
2673 2703 7.052873 GGAGTACTAGTAGGAGTAACATCACA 58.947 42.308 1.87 0.00 33.74 3.58
2674 2704 7.012232 GGAGTACTAGTAGGAGTAACATCACAC 59.988 44.444 1.87 0.00 33.74 3.82
2675 2705 7.400439 AGTACTAGTAGGAGTAACATCACACA 58.600 38.462 1.87 0.00 33.74 3.72
2676 2706 8.053963 AGTACTAGTAGGAGTAACATCACACAT 58.946 37.037 1.87 0.00 33.74 3.21
2677 2707 9.334947 GTACTAGTAGGAGTAACATCACACATA 57.665 37.037 1.87 0.00 33.74 2.29
2678 2708 8.223177 ACTAGTAGGAGTAACATCACACATAC 57.777 38.462 1.45 0.00 29.90 2.39
2679 2709 6.466885 AGTAGGAGTAACATCACACATACC 57.533 41.667 0.00 0.00 29.99 2.73
2680 2710 5.955959 AGTAGGAGTAACATCACACATACCA 59.044 40.000 0.00 0.00 29.99 3.25
2681 2711 5.755409 AGGAGTAACATCACACATACCAA 57.245 39.130 0.00 0.00 0.00 3.67
2682 2712 6.121776 AGGAGTAACATCACACATACCAAA 57.878 37.500 0.00 0.00 0.00 3.28
2683 2713 6.173339 AGGAGTAACATCACACATACCAAAG 58.827 40.000 0.00 0.00 0.00 2.77
2684 2714 5.163754 GGAGTAACATCACACATACCAAAGC 60.164 44.000 0.00 0.00 0.00 3.51
2685 2715 5.312895 AGTAACATCACACATACCAAAGCA 58.687 37.500 0.00 0.00 0.00 3.91
2686 2716 5.767665 AGTAACATCACACATACCAAAGCAA 59.232 36.000 0.00 0.00 0.00 3.91
2687 2717 4.771590 ACATCACACATACCAAAGCAAG 57.228 40.909 0.00 0.00 0.00 4.01
2688 2718 4.397420 ACATCACACATACCAAAGCAAGA 58.603 39.130 0.00 0.00 0.00 3.02
2689 2719 5.012239 ACATCACACATACCAAAGCAAGAT 58.988 37.500 0.00 0.00 0.00 2.40
2690 2720 5.106038 ACATCACACATACCAAAGCAAGATG 60.106 40.000 0.00 0.00 36.24 2.90
2691 2721 4.650734 TCACACATACCAAAGCAAGATGA 58.349 39.130 0.00 0.00 0.00 2.92
2692 2722 4.696877 TCACACATACCAAAGCAAGATGAG 59.303 41.667 0.00 0.00 0.00 2.90
2693 2723 4.456911 CACACATACCAAAGCAAGATGAGT 59.543 41.667 0.00 0.00 0.00 3.41
2694 2724 4.697352 ACACATACCAAAGCAAGATGAGTC 59.303 41.667 0.00 0.00 0.00 3.36
2695 2725 4.940046 CACATACCAAAGCAAGATGAGTCT 59.060 41.667 0.00 0.00 35.82 3.24
2696 2726 6.108687 CACATACCAAAGCAAGATGAGTCTA 58.891 40.000 0.00 0.00 33.30 2.59
2697 2727 6.765036 CACATACCAAAGCAAGATGAGTCTAT 59.235 38.462 0.00 0.00 33.30 1.98
2698 2728 7.928167 CACATACCAAAGCAAGATGAGTCTATA 59.072 37.037 0.00 0.00 33.30 1.31
2699 2729 8.486210 ACATACCAAAGCAAGATGAGTCTATAA 58.514 33.333 0.00 0.00 33.30 0.98
2700 2730 8.768955 CATACCAAAGCAAGATGAGTCTATAAC 58.231 37.037 0.00 0.00 33.30 1.89
2701 2731 6.116126 ACCAAAGCAAGATGAGTCTATAACC 58.884 40.000 0.00 0.00 33.30 2.85
2702 2732 6.069963 ACCAAAGCAAGATGAGTCTATAACCT 60.070 38.462 0.00 0.00 33.30 3.50
2703 2733 7.125811 ACCAAAGCAAGATGAGTCTATAACCTA 59.874 37.037 0.00 0.00 33.30 3.08
2704 2734 7.987458 CCAAAGCAAGATGAGTCTATAACCTAA 59.013 37.037 0.00 0.00 33.30 2.69
2705 2735 9.553064 CAAAGCAAGATGAGTCTATAACCTAAT 57.447 33.333 0.00 0.00 33.30 1.73
2731 2761 5.493133 TGAAGTGTTTCATGTTACCACAC 57.507 39.130 0.00 0.52 38.37 3.82
2732 2762 4.944317 TGAAGTGTTTCATGTTACCACACA 59.056 37.500 13.87 9.13 40.23 3.72
2733 2763 5.592282 TGAAGTGTTTCATGTTACCACACAT 59.408 36.000 13.87 6.03 40.23 3.21
2734 2764 6.768381 TGAAGTGTTTCATGTTACCACACATA 59.232 34.615 13.87 2.80 40.23 2.29
2735 2765 7.446931 TGAAGTGTTTCATGTTACCACACATAT 59.553 33.333 13.87 4.61 40.23 1.78
2736 2766 7.144722 AGTGTTTCATGTTACCACACATATG 57.855 36.000 0.00 0.00 40.23 1.78
2737 2767 6.714810 AGTGTTTCATGTTACCACACATATGT 59.285 34.615 1.41 1.41 40.23 2.29
2738 2768 7.230510 AGTGTTTCATGTTACCACACATATGTT 59.769 33.333 5.37 0.00 40.23 2.71
2739 2769 8.508062 GTGTTTCATGTTACCACACATATGTTA 58.492 33.333 5.37 0.00 36.72 2.41
2740 2770 8.508062 TGTTTCATGTTACCACACATATGTTAC 58.492 33.333 5.37 0.00 36.72 2.50
2741 2771 8.726988 GTTTCATGTTACCACACATATGTTACT 58.273 33.333 5.37 0.00 36.72 2.24
2742 2772 8.487313 TTCATGTTACCACACATATGTTACTC 57.513 34.615 5.37 0.00 36.72 2.59
2743 2773 7.045416 TCATGTTACCACACATATGTTACTCC 58.955 38.462 5.37 0.00 36.72 3.85
2744 2774 5.736813 TGTTACCACACATATGTTACTCCC 58.263 41.667 5.37 0.00 36.72 4.30
2745 2775 3.926058 ACCACACATATGTTACTCCCC 57.074 47.619 5.37 0.00 36.72 4.81
2746 2776 3.186283 ACCACACATATGTTACTCCCCA 58.814 45.455 5.37 0.00 36.72 4.96
2747 2777 3.054655 ACCACACATATGTTACTCCCCAC 60.055 47.826 5.37 0.00 36.72 4.61
2748 2778 3.199946 CCACACATATGTTACTCCCCACT 59.800 47.826 5.37 0.00 36.72 4.00
2749 2779 4.407621 CCACACATATGTTACTCCCCACTA 59.592 45.833 5.37 0.00 36.72 2.74
2750 2780 5.071788 CCACACATATGTTACTCCCCACTAT 59.928 44.000 5.37 0.00 36.72 2.12
2751 2781 5.991606 CACACATATGTTACTCCCCACTATG 59.008 44.000 5.37 0.00 36.72 2.23
2752 2782 5.071788 ACACATATGTTACTCCCCACTATGG 59.928 44.000 5.37 0.00 34.46 2.74
2753 2783 4.041691 ACATATGTTACTCCCCACTATGGC 59.958 45.833 1.41 0.00 35.79 4.40
2754 2784 2.263895 TGTTACTCCCCACTATGGCT 57.736 50.000 0.00 0.00 35.79 4.75
2755 2785 3.408157 TGTTACTCCCCACTATGGCTA 57.592 47.619 0.00 0.00 35.79 3.93
2756 2786 3.305720 TGTTACTCCCCACTATGGCTAG 58.694 50.000 0.00 0.00 35.79 3.42
2757 2787 3.306613 GTTACTCCCCACTATGGCTAGT 58.693 50.000 0.00 5.85 38.79 2.57
2758 2788 2.089600 ACTCCCCACTATGGCTAGTC 57.910 55.000 0.00 0.00 35.99 2.59
2759 2789 1.343069 CTCCCCACTATGGCTAGTCC 58.657 60.000 0.00 0.00 35.99 3.85
2771 2801 3.036091 TGGCTAGTCCATGTTACTACCC 58.964 50.000 8.77 8.77 40.72 3.69
2772 2802 3.036091 GGCTAGTCCATGTTACTACCCA 58.964 50.000 10.09 0.00 29.18 4.51
2773 2803 3.646637 GGCTAGTCCATGTTACTACCCAT 59.353 47.826 10.09 0.00 29.18 4.00
2774 2804 4.102681 GGCTAGTCCATGTTACTACCCATT 59.897 45.833 10.09 0.00 29.18 3.16
2775 2805 5.057149 GCTAGTCCATGTTACTACCCATTG 58.943 45.833 1.96 0.00 0.00 2.82
2776 2806 5.396436 GCTAGTCCATGTTACTACCCATTGT 60.396 44.000 1.96 0.00 0.00 2.71
2777 2807 4.843728 AGTCCATGTTACTACCCATTGTG 58.156 43.478 0.00 0.00 0.00 3.33
2778 2808 3.945285 GTCCATGTTACTACCCATTGTGG 59.055 47.826 0.00 0.00 37.25 4.17
2779 2809 2.687935 CCATGTTACTACCCATTGTGGC 59.312 50.000 0.00 0.00 35.79 5.01
2780 2810 3.620488 CATGTTACTACCCATTGTGGCT 58.380 45.455 0.00 0.00 35.79 4.75
2781 2811 4.384757 CCATGTTACTACCCATTGTGGCTA 60.385 45.833 0.00 0.00 35.79 3.93
2782 2812 4.481368 TGTTACTACCCATTGTGGCTAG 57.519 45.455 0.00 0.00 35.79 3.42
2783 2813 3.841845 TGTTACTACCCATTGTGGCTAGT 59.158 43.478 8.55 8.55 35.79 2.57
2784 2814 4.081309 TGTTACTACCCATTGTGGCTAGTC 60.081 45.833 7.13 0.00 35.79 2.59
2808 2838 6.934645 TCTTACATTTAGAAACAGAGGGTGTG 59.065 38.462 0.00 0.00 40.26 3.82
2809 2839 5.048846 ACATTTAGAAACAGAGGGTGTGT 57.951 39.130 0.00 0.00 40.26 3.72
2810 2840 6.182507 ACATTTAGAAACAGAGGGTGTGTA 57.817 37.500 0.00 0.00 40.26 2.90
2811 2841 5.995897 ACATTTAGAAACAGAGGGTGTGTAC 59.004 40.000 0.00 0.00 40.26 2.90
2812 2842 5.881923 TTTAGAAACAGAGGGTGTGTACT 57.118 39.130 0.00 0.00 40.26 2.73
2813 2843 6.982160 TTTAGAAACAGAGGGTGTGTACTA 57.018 37.500 0.00 0.00 40.26 1.82
2815 2845 4.220724 AGAAACAGAGGGTGTGTACTACA 58.779 43.478 0.00 0.00 40.26 2.74
2823 2853 4.743558 GTGTACTACACGCGCGTA 57.256 55.556 37.24 20.97 39.53 4.42
2840 2870 0.812811 GTAGGAACGGCCGATTTCCC 60.813 60.000 32.70 23.69 42.14 3.97
2852 2882 2.364002 CCGATTTCCCACAGGTTGTTTT 59.636 45.455 0.00 0.00 0.00 2.43
2853 2883 3.181470 CCGATTTCCCACAGGTTGTTTTT 60.181 43.478 0.00 0.00 0.00 1.94
2873 2903 3.094484 TGTTCCTGGTTTGGAAAGTGT 57.906 42.857 0.00 0.00 46.34 3.55
2889 2919 8.786826 TGGAAAGTGTGTAGGATTACTTATTG 57.213 34.615 0.00 0.00 33.37 1.90
2890 2920 8.598916 TGGAAAGTGTGTAGGATTACTTATTGA 58.401 33.333 0.00 0.00 33.37 2.57
2891 2921 9.099454 GGAAAGTGTGTAGGATTACTTATTGAG 57.901 37.037 0.00 0.00 33.37 3.02
2927 2957 8.814038 ATTTGACACTATCTTAAAATCAGCCT 57.186 30.769 0.00 0.00 0.00 4.58
2928 2958 7.849804 TTGACACTATCTTAAAATCAGCCTC 57.150 36.000 0.00 0.00 0.00 4.70
2929 2959 6.349300 TGACACTATCTTAAAATCAGCCTCC 58.651 40.000 0.00 0.00 0.00 4.30
2930 2960 6.156949 TGACACTATCTTAAAATCAGCCTCCT 59.843 38.462 0.00 0.00 0.00 3.69
2931 2961 6.963322 ACACTATCTTAAAATCAGCCTCCTT 58.037 36.000 0.00 0.00 0.00 3.36
2932 2962 8.090788 ACACTATCTTAAAATCAGCCTCCTTA 57.909 34.615 0.00 0.00 0.00 2.69
2933 2963 8.718656 ACACTATCTTAAAATCAGCCTCCTTAT 58.281 33.333 0.00 0.00 0.00 1.73
2934 2964 9.566432 CACTATCTTAAAATCAGCCTCCTTATT 57.434 33.333 0.00 0.00 0.00 1.40
2938 2968 8.281212 TCTTAAAATCAGCCTCCTTATTTGAC 57.719 34.615 0.00 0.00 28.21 3.18
2939 2969 7.888021 TCTTAAAATCAGCCTCCTTATTTGACA 59.112 33.333 0.00 0.00 28.21 3.58
2940 2970 6.521151 AAAATCAGCCTCCTTATTTGACAG 57.479 37.500 0.00 0.00 28.21 3.51
2941 2971 4.851639 ATCAGCCTCCTTATTTGACAGT 57.148 40.909 0.00 0.00 0.00 3.55
2942 2972 3.942829 TCAGCCTCCTTATTTGACAGTG 58.057 45.455 0.00 0.00 0.00 3.66
2943 2973 3.582647 TCAGCCTCCTTATTTGACAGTGA 59.417 43.478 0.00 0.00 0.00 3.41
2944 2974 4.041567 TCAGCCTCCTTATTTGACAGTGAA 59.958 41.667 0.00 0.00 0.00 3.18
2945 2975 4.761739 CAGCCTCCTTATTTGACAGTGAAA 59.238 41.667 0.00 0.00 0.00 2.69
2946 2976 5.241506 CAGCCTCCTTATTTGACAGTGAAAA 59.758 40.000 0.00 0.00 0.00 2.29
2947 2977 5.833131 AGCCTCCTTATTTGACAGTGAAAAA 59.167 36.000 0.00 0.00 0.00 1.94
2969 2999 8.887036 AAAAATTGTTCTTCCCTATTTGACAC 57.113 30.769 0.00 0.00 0.00 3.67
2970 3000 7.595819 AAATTGTTCTTCCCTATTTGACACA 57.404 32.000 0.00 0.00 0.00 3.72
2971 3001 7.595819 AATTGTTCTTCCCTATTTGACACAA 57.404 32.000 0.00 0.00 0.00 3.33
2972 3002 6.633500 TTGTTCTTCCCTATTTGACACAAG 57.367 37.500 0.00 0.00 0.00 3.16
2973 3003 5.690865 TGTTCTTCCCTATTTGACACAAGT 58.309 37.500 0.00 0.00 0.00 3.16
2974 3004 6.126409 TGTTCTTCCCTATTTGACACAAGTT 58.874 36.000 0.00 0.00 0.00 2.66
2975 3005 6.262273 TGTTCTTCCCTATTTGACACAAGTTC 59.738 38.462 0.00 0.00 0.00 3.01
2976 3006 6.187727 TCTTCCCTATTTGACACAAGTTCT 57.812 37.500 0.00 0.00 0.00 3.01
2977 3007 7.311092 TCTTCCCTATTTGACACAAGTTCTA 57.689 36.000 0.00 0.00 0.00 2.10
2978 3008 7.741785 TCTTCCCTATTTGACACAAGTTCTAA 58.258 34.615 0.00 0.00 0.00 2.10
2979 3009 8.215050 TCTTCCCTATTTGACACAAGTTCTAAA 58.785 33.333 0.00 0.00 0.00 1.85
2980 3010 8.934023 TTCCCTATTTGACACAAGTTCTAAAT 57.066 30.769 0.00 0.00 0.00 1.40
2981 3011 8.934023 TCCCTATTTGACACAAGTTCTAAATT 57.066 30.769 0.00 0.00 0.00 1.82
2982 3012 9.362151 TCCCTATTTGACACAAGTTCTAAATTT 57.638 29.630 0.00 0.00 0.00 1.82
2983 3013 9.981114 CCCTATTTGACACAAGTTCTAAATTTT 57.019 29.630 0.00 0.00 0.00 1.82
2989 3019 9.974980 TTGACACAAGTTCTAAATTTTATTCCC 57.025 29.630 0.00 0.00 0.00 3.97
2990 3020 9.362151 TGACACAAGTTCTAAATTTTATTCCCT 57.638 29.630 0.00 0.00 0.00 4.20
3016 3046 5.664870 CGACATTTTCGTCCATTTTAAGC 57.335 39.130 0.00 0.00 43.24 3.09
3017 3047 4.557301 CGACATTTTCGTCCATTTTAAGCC 59.443 41.667 0.00 0.00 43.24 4.35
3018 3048 5.619086 CGACATTTTCGTCCATTTTAAGCCT 60.619 40.000 0.00 0.00 43.24 4.58
3019 3049 6.402766 CGACATTTTCGTCCATTTTAAGCCTA 60.403 38.462 0.00 0.00 43.24 3.93
3020 3050 7.222000 ACATTTTCGTCCATTTTAAGCCTAA 57.778 32.000 0.00 0.00 0.00 2.69
3021 3051 7.662897 ACATTTTCGTCCATTTTAAGCCTAAA 58.337 30.769 0.00 0.00 0.00 1.85
3022 3052 8.311109 ACATTTTCGTCCATTTTAAGCCTAAAT 58.689 29.630 0.00 0.00 0.00 1.40
3023 3053 8.594687 CATTTTCGTCCATTTTAAGCCTAAATG 58.405 33.333 8.17 8.17 40.81 2.32
3024 3054 7.455641 TTTCGTCCATTTTAAGCCTAAATGA 57.544 32.000 14.08 0.00 42.72 2.57
3025 3055 6.431198 TCGTCCATTTTAAGCCTAAATGAC 57.569 37.500 14.08 8.84 42.72 3.06
3026 3056 5.941058 TCGTCCATTTTAAGCCTAAATGACA 59.059 36.000 14.08 0.00 42.72 3.58
3027 3057 6.027749 CGTCCATTTTAAGCCTAAATGACAC 58.972 40.000 14.08 10.26 42.72 3.67
3028 3058 6.330278 GTCCATTTTAAGCCTAAATGACACC 58.670 40.000 14.08 0.83 42.72 4.16
3029 3059 6.152831 GTCCATTTTAAGCCTAAATGACACCT 59.847 38.462 14.08 0.00 42.72 4.00
3030 3060 6.152661 TCCATTTTAAGCCTAAATGACACCTG 59.847 38.462 14.08 1.57 42.72 4.00
3031 3061 6.152661 CCATTTTAAGCCTAAATGACACCTGA 59.847 38.462 14.08 0.00 42.72 3.86
3032 3062 7.309744 CCATTTTAAGCCTAAATGACACCTGAA 60.310 37.037 14.08 0.00 42.72 3.02
3033 3063 7.589958 TTTTAAGCCTAAATGACACCTGAAA 57.410 32.000 0.00 0.00 0.00 2.69
3034 3064 7.589958 TTTAAGCCTAAATGACACCTGAAAA 57.410 32.000 0.00 0.00 0.00 2.29
3035 3065 5.712152 AAGCCTAAATGACACCTGAAAAG 57.288 39.130 0.00 0.00 0.00 2.27
3036 3066 4.985538 AGCCTAAATGACACCTGAAAAGA 58.014 39.130 0.00 0.00 0.00 2.52
3037 3067 4.762251 AGCCTAAATGACACCTGAAAAGAC 59.238 41.667 0.00 0.00 0.00 3.01
3038 3068 4.762251 GCCTAAATGACACCTGAAAAGACT 59.238 41.667 0.00 0.00 0.00 3.24
3039 3069 5.106515 GCCTAAATGACACCTGAAAAGACTC 60.107 44.000 0.00 0.00 0.00 3.36
3040 3070 6.234177 CCTAAATGACACCTGAAAAGACTCT 58.766 40.000 0.00 0.00 0.00 3.24
3041 3071 6.712547 CCTAAATGACACCTGAAAAGACTCTT 59.287 38.462 0.00 0.00 0.00 2.85
3042 3072 7.229506 CCTAAATGACACCTGAAAAGACTCTTT 59.770 37.037 0.00 0.00 0.00 2.52
3043 3073 7.410120 AAATGACACCTGAAAAGACTCTTTT 57.590 32.000 15.33 15.33 0.00 2.27
3044 3074 5.818136 TGACACCTGAAAAGACTCTTTTG 57.182 39.130 19.43 9.40 0.00 2.44
3045 3075 4.096382 TGACACCTGAAAAGACTCTTTTGC 59.904 41.667 19.43 12.06 0.00 3.68
3046 3076 3.381590 ACACCTGAAAAGACTCTTTTGCC 59.618 43.478 19.43 8.34 0.00 4.52
3047 3077 2.959030 ACCTGAAAAGACTCTTTTGCCC 59.041 45.455 19.43 7.73 0.00 5.36
3048 3078 2.297315 CCTGAAAAGACTCTTTTGCCCC 59.703 50.000 19.43 7.42 0.00 5.80
3049 3079 3.225940 CTGAAAAGACTCTTTTGCCCCT 58.774 45.455 19.43 0.00 0.00 4.79
3050 3080 3.222603 TGAAAAGACTCTTTTGCCCCTC 58.777 45.455 19.43 6.60 0.00 4.30
3051 3081 3.222603 GAAAAGACTCTTTTGCCCCTCA 58.777 45.455 19.43 0.00 0.00 3.86
3052 3082 3.532641 AAAGACTCTTTTGCCCCTCAT 57.467 42.857 0.00 0.00 0.00 2.90
3053 3083 2.503895 AGACTCTTTTGCCCCTCATG 57.496 50.000 0.00 0.00 0.00 3.07
3054 3084 1.707427 AGACTCTTTTGCCCCTCATGT 59.293 47.619 0.00 0.00 0.00 3.21
3055 3085 1.815003 GACTCTTTTGCCCCTCATGTG 59.185 52.381 0.00 0.00 0.00 3.21
3056 3086 1.180029 CTCTTTTGCCCCTCATGTGG 58.820 55.000 6.84 6.84 0.00 4.17
3057 3087 0.482446 TCTTTTGCCCCTCATGTGGT 59.518 50.000 12.65 0.00 0.00 4.16
3058 3088 1.707989 TCTTTTGCCCCTCATGTGGTA 59.292 47.619 12.65 0.00 0.00 3.25
3059 3089 2.311542 TCTTTTGCCCCTCATGTGGTAT 59.688 45.455 12.65 0.00 0.00 2.73
3060 3090 2.142356 TTTGCCCCTCATGTGGTATG 57.858 50.000 12.65 2.55 0.00 2.39
3061 3091 0.998928 TTGCCCCTCATGTGGTATGT 59.001 50.000 12.65 0.00 0.00 2.29
3062 3092 0.255604 TGCCCCTCATGTGGTATGTG 59.744 55.000 12.65 0.00 0.00 3.21
3063 3093 1.103398 GCCCCTCATGTGGTATGTGC 61.103 60.000 12.65 3.96 0.00 4.57
3064 3094 0.815213 CCCCTCATGTGGTATGTGCG 60.815 60.000 12.65 0.00 0.00 5.34
3065 3095 0.107703 CCCTCATGTGGTATGTGCGT 60.108 55.000 12.65 0.00 0.00 5.24
3066 3096 1.009078 CCTCATGTGGTATGTGCGTG 58.991 55.000 5.61 0.00 0.00 5.34
3067 3097 0.374758 CTCATGTGGTATGTGCGTGC 59.625 55.000 0.00 0.00 0.00 5.34
3068 3098 0.321122 TCATGTGGTATGTGCGTGCA 60.321 50.000 0.00 0.00 0.00 4.57
3069 3099 0.097499 CATGTGGTATGTGCGTGCAG 59.903 55.000 0.00 0.00 0.00 4.41
3081 3111 3.366392 CGTGCAGCAACACATACAC 57.634 52.632 0.00 0.00 40.73 2.90
3082 3112 0.585838 CGTGCAGCAACACATACACA 59.414 50.000 0.00 0.00 40.73 3.72
3083 3113 1.197492 CGTGCAGCAACACATACACAT 59.803 47.619 0.00 0.00 40.73 3.21
3084 3114 2.587956 GTGCAGCAACACATACACATG 58.412 47.619 0.00 0.00 40.40 3.21
3085 3115 1.068402 TGCAGCAACACATACACATGC 60.068 47.619 0.00 0.00 35.39 4.06
3086 3116 1.068402 GCAGCAACACATACACATGCA 60.068 47.619 0.00 0.00 39.42 3.96
3087 3117 2.587956 CAGCAACACATACACATGCAC 58.412 47.619 0.00 0.00 39.42 4.57
3088 3118 1.541147 AGCAACACATACACATGCACC 59.459 47.619 0.00 0.00 39.42 5.01
3089 3119 1.269174 GCAACACATACACATGCACCA 59.731 47.619 0.00 0.00 37.00 4.17
3090 3120 2.288091 GCAACACATACACATGCACCAA 60.288 45.455 0.00 0.00 37.00 3.67
3091 3121 3.307674 CAACACATACACATGCACCAAC 58.692 45.455 0.00 0.00 35.39 3.77
3092 3122 2.580962 ACACATACACATGCACCAACA 58.419 42.857 0.00 0.00 35.39 3.33
3093 3123 2.293122 ACACATACACATGCACCAACAC 59.707 45.455 0.00 0.00 35.39 3.32
3094 3124 2.292845 CACATACACATGCACCAACACA 59.707 45.455 0.00 0.00 35.39 3.72
3095 3125 2.293122 ACATACACATGCACCAACACAC 59.707 45.455 0.00 0.00 35.39 3.82
3096 3126 2.044123 TACACATGCACCAACACACA 57.956 45.000 0.00 0.00 0.00 3.72
3097 3127 0.455410 ACACATGCACCAACACACAC 59.545 50.000 0.00 0.00 0.00 3.82
3098 3128 0.591994 CACATGCACCAACACACACG 60.592 55.000 0.00 0.00 0.00 4.49
3099 3129 1.658102 CATGCACCAACACACACGC 60.658 57.895 0.00 0.00 0.00 5.34
3100 3130 2.117779 ATGCACCAACACACACGCA 61.118 52.632 0.00 0.00 0.00 5.24
3101 3131 2.277884 GCACCAACACACACGCAC 60.278 61.111 0.00 0.00 0.00 5.34
3102 3132 2.022623 CACCAACACACACGCACG 59.977 61.111 0.00 0.00 0.00 5.34
3103 3133 3.871574 ACCAACACACACGCACGC 61.872 61.111 0.00 0.00 0.00 5.34
3104 3134 4.936248 CCAACACACACGCACGCG 62.936 66.667 10.36 10.36 46.03 6.01
3120 3150 2.099254 CGCACACACACGCAACAA 59.901 55.556 0.00 0.00 0.00 2.83
3121 3151 2.214292 CGCACACACACGCAACAAC 61.214 57.895 0.00 0.00 0.00 3.32
3122 3152 1.154131 GCACACACACGCAACAACA 60.154 52.632 0.00 0.00 0.00 3.33
3123 3153 1.402479 GCACACACACGCAACAACAC 61.402 55.000 0.00 0.00 0.00 3.32
3124 3154 1.125274 CACACACACGCAACAACACG 61.125 55.000 0.00 0.00 0.00 4.49
3125 3155 2.099446 ACACACGCAACAACACGC 59.901 55.556 0.00 0.00 0.00 5.34
3126 3156 2.099254 CACACGCAACAACACGCA 59.901 55.556 0.00 0.00 0.00 5.24
3127 3157 2.099446 ACACGCAACAACACGCAC 59.901 55.556 0.00 0.00 0.00 5.34
3128 3158 3.010692 CACGCAACAACACGCACG 61.011 61.111 0.00 0.00 0.00 5.34
3129 3159 4.879686 ACGCAACAACACGCACGC 62.880 61.111 0.00 0.00 0.00 5.34
3185 3215 7.179269 AGTAGATTTGCAATAAGTGGGGTTTA 58.821 34.615 0.00 0.00 0.00 2.01
3186 3216 6.926630 AGATTTGCAATAAGTGGGGTTTAA 57.073 33.333 0.00 0.00 0.00 1.52
3187 3217 7.309770 AGATTTGCAATAAGTGGGGTTTAAA 57.690 32.000 0.00 0.00 0.00 1.52
3188 3218 7.740805 AGATTTGCAATAAGTGGGGTTTAAAA 58.259 30.769 0.00 0.00 0.00 1.52
3189 3219 7.659799 AGATTTGCAATAAGTGGGGTTTAAAAC 59.340 33.333 0.00 0.00 0.00 2.43
3190 3220 5.871396 TGCAATAAGTGGGGTTTAAAACA 57.129 34.783 5.45 0.00 0.00 2.83
3191 3221 6.235231 TGCAATAAGTGGGGTTTAAAACAA 57.765 33.333 5.45 0.00 0.00 2.83
3192 3222 6.049790 TGCAATAAGTGGGGTTTAAAACAAC 58.950 36.000 5.45 2.99 0.00 3.32
3193 3223 5.176039 GCAATAAGTGGGGTTTAAAACAACG 59.824 40.000 5.45 0.00 0.00 4.10
3194 3224 3.804786 AAGTGGGGTTTAAAACAACGG 57.195 42.857 5.45 0.00 0.00 4.44
3195 3225 2.737544 AGTGGGGTTTAAAACAACGGT 58.262 42.857 5.45 0.00 0.00 4.83
3196 3226 2.427812 AGTGGGGTTTAAAACAACGGTG 59.572 45.455 5.45 0.00 0.00 4.94
3197 3227 1.755380 TGGGGTTTAAAACAACGGTGG 59.245 47.619 4.97 0.00 0.00 4.61
3198 3228 1.068895 GGGGTTTAAAACAACGGTGGG 59.931 52.381 4.97 0.00 0.00 4.61
3199 3229 2.030371 GGGTTTAAAACAACGGTGGGA 58.970 47.619 4.97 0.00 0.00 4.37
3200 3230 2.223782 GGGTTTAAAACAACGGTGGGAC 60.224 50.000 4.97 0.00 0.00 4.46
3201 3231 2.223782 GGTTTAAAACAACGGTGGGACC 60.224 50.000 4.97 0.00 34.05 4.46
3202 3232 1.689984 TTAAAACAACGGTGGGACCC 58.310 50.000 4.97 2.45 33.75 4.46
3203 3233 0.549950 TAAAACAACGGTGGGACCCA 59.450 50.000 9.95 9.95 33.75 4.51
3223 3253 2.124151 CTGAAATCAGGGGGCCGG 60.124 66.667 0.00 0.00 40.20 6.13
3224 3254 2.612430 TGAAATCAGGGGGCCGGA 60.612 61.111 5.05 0.00 31.46 5.14
3225 3255 2.124278 GAAATCAGGGGGCCGGAC 60.124 66.667 5.05 0.00 29.31 4.79
3226 3256 4.109675 AAATCAGGGGGCCGGACG 62.110 66.667 5.05 0.00 29.31 4.79
3230 3260 4.109675 CAGGGGGCCGGACGAATT 62.110 66.667 5.05 0.00 0.00 2.17
3231 3261 3.335729 AGGGGGCCGGACGAATTT 61.336 61.111 5.05 0.00 0.00 1.82
3232 3262 2.361992 GGGGGCCGGACGAATTTT 60.362 61.111 5.05 0.00 0.00 1.82
3233 3263 2.412323 GGGGGCCGGACGAATTTTC 61.412 63.158 5.05 0.00 0.00 2.29
3234 3264 1.676303 GGGGCCGGACGAATTTTCA 60.676 57.895 5.05 0.00 0.00 2.69
3235 3265 1.245376 GGGGCCGGACGAATTTTCAA 61.245 55.000 5.05 0.00 0.00 2.69
3236 3266 0.109458 GGGCCGGACGAATTTTCAAC 60.109 55.000 5.05 0.00 0.00 3.18
3237 3267 0.453782 GGCCGGACGAATTTTCAACG 60.454 55.000 5.05 0.00 0.00 4.10
3238 3268 0.236449 GCCGGACGAATTTTCAACGT 59.764 50.000 5.05 0.00 42.84 3.99
3239 3269 1.334329 GCCGGACGAATTTTCAACGTT 60.334 47.619 5.05 0.00 40.29 3.99
3240 3270 2.567067 CCGGACGAATTTTCAACGTTC 58.433 47.619 0.00 0.00 40.29 3.95
3241 3271 2.222445 CCGGACGAATTTTCAACGTTCT 59.778 45.455 0.00 0.00 40.29 3.01
3242 3272 3.303526 CCGGACGAATTTTCAACGTTCTT 60.304 43.478 0.00 0.00 40.29 2.52
3243 3273 3.657625 CGGACGAATTTTCAACGTTCTTG 59.342 43.478 0.00 0.00 40.29 3.02
3244 3274 3.972502 GGACGAATTTTCAACGTTCTTGG 59.027 43.478 0.00 0.00 40.29 3.61
3245 3275 3.959943 ACGAATTTTCAACGTTCTTGGG 58.040 40.909 0.00 0.00 36.91 4.12
3246 3276 3.243267 ACGAATTTTCAACGTTCTTGGGG 60.243 43.478 0.00 0.00 36.91 4.96
3247 3277 3.003897 CGAATTTTCAACGTTCTTGGGGA 59.996 43.478 0.00 0.00 0.00 4.81
3248 3278 4.546570 GAATTTTCAACGTTCTTGGGGAG 58.453 43.478 0.00 0.00 0.00 4.30
3249 3279 1.314730 TTTCAACGTTCTTGGGGAGC 58.685 50.000 0.00 0.00 0.00 4.70
3250 3280 0.536460 TTCAACGTTCTTGGGGAGCC 60.536 55.000 0.00 0.00 0.00 4.70
3251 3281 1.073199 CAACGTTCTTGGGGAGCCT 59.927 57.895 0.00 0.00 0.00 4.58
3252 3282 1.073199 AACGTTCTTGGGGAGCCTG 59.927 57.895 0.00 0.00 0.00 4.85
3253 3283 1.705997 AACGTTCTTGGGGAGCCTGT 61.706 55.000 0.00 0.00 0.00 4.00
3254 3284 1.073199 CGTTCTTGGGGAGCCTGTT 59.927 57.895 0.00 0.00 0.00 3.16
3255 3285 1.237285 CGTTCTTGGGGAGCCTGTTG 61.237 60.000 0.00 0.00 0.00 3.33
3256 3286 0.110486 GTTCTTGGGGAGCCTGTTGA 59.890 55.000 0.00 0.00 0.00 3.18
3257 3287 0.110486 TTCTTGGGGAGCCTGTTGAC 59.890 55.000 0.00 0.00 0.00 3.18
3258 3288 1.059584 TCTTGGGGAGCCTGTTGACA 61.060 55.000 0.00 0.00 0.00 3.58
3259 3289 0.178992 CTTGGGGAGCCTGTTGACAA 60.179 55.000 0.00 0.00 0.00 3.18
3260 3290 0.482446 TTGGGGAGCCTGTTGACAAT 59.518 50.000 0.00 0.00 0.00 2.71
3261 3291 0.482446 TGGGGAGCCTGTTGACAATT 59.518 50.000 0.00 0.00 0.00 2.32
3262 3292 1.133199 TGGGGAGCCTGTTGACAATTT 60.133 47.619 0.00 0.00 0.00 1.82
3263 3293 1.273327 GGGGAGCCTGTTGACAATTTG 59.727 52.381 0.00 0.00 0.00 2.32
3264 3294 1.273327 GGGAGCCTGTTGACAATTTGG 59.727 52.381 0.78 0.00 0.00 3.28
3265 3295 1.273327 GGAGCCTGTTGACAATTTGGG 59.727 52.381 0.78 0.00 0.00 4.12
3266 3296 1.963515 GAGCCTGTTGACAATTTGGGT 59.036 47.619 0.78 7.99 0.00 4.51
3267 3297 1.963515 AGCCTGTTGACAATTTGGGTC 59.036 47.619 0.78 0.00 35.83 4.46
3268 3298 1.000843 GCCTGTTGACAATTTGGGTCC 59.999 52.381 0.78 0.00 34.36 4.46
3269 3299 2.597455 CCTGTTGACAATTTGGGTCCT 58.403 47.619 0.78 0.00 34.36 3.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
50 52 7.180051 TGGTGGGATATTGCTAAATCAGTTTTT 59.820 33.333 0.00 0.00 0.00 1.94
107 110 1.592081 GACAAGTGAGATGCATCGAGC 59.408 52.381 20.67 14.35 45.96 5.03
381 386 4.496840 GGACGGTTTTTAAAGTGTGGACAG 60.497 45.833 0.00 0.00 0.00 3.51
400 405 2.362169 ATTTTGAAAATGCCCGGACG 57.638 45.000 0.73 0.00 0.00 4.79
687 694 2.548178 CAGCCGATGACTGCTGTTT 58.452 52.632 0.00 0.00 45.00 2.83
724 731 1.832167 AGCACCACGCACCCAAAAT 60.832 52.632 0.00 0.00 46.13 1.82
745 753 8.184192 GTCAATTTTTCATAGGGTGTGACTATG 58.816 37.037 6.19 6.19 45.75 2.23
746 754 7.888021 TGTCAATTTTTCATAGGGTGTGACTAT 59.112 33.333 0.00 0.00 35.14 2.12
747 755 7.174253 GTGTCAATTTTTCATAGGGTGTGACTA 59.826 37.037 0.00 0.00 35.14 2.59
748 756 6.016276 GTGTCAATTTTTCATAGGGTGTGACT 60.016 38.462 0.00 0.00 35.14 3.41
749 757 6.149633 GTGTCAATTTTTCATAGGGTGTGAC 58.850 40.000 0.00 0.00 34.76 3.67
750 758 5.049060 CGTGTCAATTTTTCATAGGGTGTGA 60.049 40.000 0.00 0.00 0.00 3.58
751 759 5.049060 TCGTGTCAATTTTTCATAGGGTGTG 60.049 40.000 0.00 0.00 0.00 3.82
752 760 5.048991 GTCGTGTCAATTTTTCATAGGGTGT 60.049 40.000 0.00 0.00 0.00 4.16
753 761 5.390613 GTCGTGTCAATTTTTCATAGGGTG 58.609 41.667 0.00 0.00 0.00 4.61
754 762 4.457949 GGTCGTGTCAATTTTTCATAGGGT 59.542 41.667 0.00 0.00 0.00 4.34
755 763 4.700213 AGGTCGTGTCAATTTTTCATAGGG 59.300 41.667 0.00 0.00 0.00 3.53
756 764 5.631026 CAGGTCGTGTCAATTTTTCATAGG 58.369 41.667 0.00 0.00 0.00 2.57
757 765 5.088739 GCAGGTCGTGTCAATTTTTCATAG 58.911 41.667 0.00 0.00 0.00 2.23
845 861 0.882042 CATCCATGCACTCCGGTAGC 60.882 60.000 0.00 4.85 0.00 3.58
870 886 0.515564 AATTTCACTTTCGTCGCGGG 59.484 50.000 6.13 0.00 0.00 6.13
1482 1499 1.428219 GAAGAGGACGACGATCGCA 59.572 57.895 16.60 0.00 45.12 5.10
1919 1936 4.680237 TCCCGTGCCTTGTCAGCG 62.680 66.667 0.00 0.00 0.00 5.18
2137 2163 5.993748 TCCTCTTCCTCTTCTTCTTCTTC 57.006 43.478 0.00 0.00 0.00 2.87
2138 2164 6.755542 TTTCCTCTTCCTCTTCTTCTTCTT 57.244 37.500 0.00 0.00 0.00 2.52
2139 2165 6.239858 CCTTTTCCTCTTCCTCTTCTTCTTCT 60.240 42.308 0.00 0.00 0.00 2.85
2142 2168 5.158889 TCCTTTTCCTCTTCCTCTTCTTCT 58.841 41.667 0.00 0.00 0.00 2.85
2282 2308 3.013921 TCCAGTCAATAAAATGCGACCC 58.986 45.455 0.00 0.00 0.00 4.46
2294 2320 3.312736 ACCAACCAAAGTCCAGTCAAT 57.687 42.857 0.00 0.00 0.00 2.57
2300 2326 1.398692 GAGCAACCAACCAAAGTCCA 58.601 50.000 0.00 0.00 0.00 4.02
2323 2349 2.054799 TCTAGTGTCCCCAGCAAAACT 58.945 47.619 0.00 0.00 0.00 2.66
2325 2351 2.814097 GCTTCTAGTGTCCCCAGCAAAA 60.814 50.000 0.00 0.00 0.00 2.44
2333 2359 2.605823 CGATCGATGCTTCTAGTGTCCC 60.606 54.545 10.26 0.00 0.00 4.46
2336 2362 3.206964 TCTCGATCGATGCTTCTAGTGT 58.793 45.455 19.78 0.00 0.00 3.55
2414 2441 3.449737 TGGGAATACAGGTAGTAGCACAC 59.550 47.826 1.58 0.00 35.85 3.82
2455 2485 5.299782 CACTGTGGGTAGTCTAATAGGTCTC 59.700 48.000 0.00 0.00 0.00 3.36
2472 2502 2.038426 TGTGATGTTACTCCCACTGTGG 59.962 50.000 20.01 20.01 37.25 4.17
2473 2503 3.067106 GTGTGATGTTACTCCCACTGTG 58.933 50.000 0.00 0.00 0.00 3.66
2474 2504 2.703536 TGTGTGATGTTACTCCCACTGT 59.296 45.455 0.00 0.00 0.00 3.55
2475 2505 3.401033 TGTGTGATGTTACTCCCACTG 57.599 47.619 0.00 0.00 0.00 3.66
2476 2506 3.327757 ACATGTGTGATGTTACTCCCACT 59.672 43.478 0.00 0.00 0.00 4.00
2477 2507 3.674997 ACATGTGTGATGTTACTCCCAC 58.325 45.455 0.00 0.00 0.00 4.61
2478 2508 3.582647 AGACATGTGTGATGTTACTCCCA 59.417 43.478 1.15 0.00 31.52 4.37
2479 2509 4.207891 AGACATGTGTGATGTTACTCCC 57.792 45.455 1.15 0.00 31.52 4.30
2480 2510 6.208988 TCTAGACATGTGTGATGTTACTCC 57.791 41.667 1.15 0.00 31.52 3.85
2481 2511 9.803315 TTTATCTAGACATGTGTGATGTTACTC 57.197 33.333 1.15 0.00 31.52 2.59
2495 2525 9.664332 GCCACATCATCTATTTTATCTAGACAT 57.336 33.333 0.00 0.00 0.00 3.06
2496 2526 8.650490 TGCCACATCATCTATTTTATCTAGACA 58.350 33.333 0.00 0.00 0.00 3.41
2497 2527 9.494271 TTGCCACATCATCTATTTTATCTAGAC 57.506 33.333 0.00 0.00 0.00 2.59
2510 2540 9.976511 CTTCATTTATTATTTGCCACATCATCT 57.023 29.630 0.00 0.00 0.00 2.90
2511 2541 9.970395 TCTTCATTTATTATTTGCCACATCATC 57.030 29.630 0.00 0.00 0.00 2.92
2544 2574 9.866798 GTAGTAACTAGCTATGTACCACTTTTT 57.133 33.333 0.00 0.00 0.00 1.94
2545 2575 9.252635 AGTAGTAACTAGCTATGTACCACTTTT 57.747 33.333 8.37 0.00 32.84 2.27
2546 2576 8.820153 AGTAGTAACTAGCTATGTACCACTTT 57.180 34.615 8.37 0.00 32.84 2.66
2547 2577 7.501892 GGAGTAGTAACTAGCTATGTACCACTT 59.498 40.741 12.89 2.69 35.56 3.16
2548 2578 6.997476 GGAGTAGTAACTAGCTATGTACCACT 59.003 42.308 12.02 12.02 35.56 4.00
2549 2579 6.206438 GGGAGTAGTAACTAGCTATGTACCAC 59.794 46.154 0.00 0.00 35.56 4.16
2550 2580 6.102321 AGGGAGTAGTAACTAGCTATGTACCA 59.898 42.308 0.00 0.00 35.56 3.25
2551 2581 6.541907 AGGGAGTAGTAACTAGCTATGTACC 58.458 44.000 0.00 0.00 35.56 3.34
2552 2582 6.654582 GGAGGGAGTAGTAACTAGCTATGTAC 59.345 46.154 0.00 0.00 35.56 2.90
2553 2583 6.519721 CGGAGGGAGTAGTAACTAGCTATGTA 60.520 46.154 0.00 0.00 35.56 2.29
2554 2584 5.633117 GGAGGGAGTAGTAACTAGCTATGT 58.367 45.833 0.00 0.00 35.56 2.29
2555 2585 4.696402 CGGAGGGAGTAGTAACTAGCTATG 59.304 50.000 0.00 0.00 35.56 2.23
2556 2586 4.350520 ACGGAGGGAGTAGTAACTAGCTAT 59.649 45.833 0.00 0.00 35.56 2.97
2557 2587 3.713764 ACGGAGGGAGTAGTAACTAGCTA 59.286 47.826 0.00 0.00 35.56 3.32
2558 2588 2.509131 ACGGAGGGAGTAGTAACTAGCT 59.491 50.000 0.00 0.00 35.56 3.32
2559 2589 2.877786 GACGGAGGGAGTAGTAACTAGC 59.122 54.545 0.00 0.00 35.56 3.42
2560 2590 4.141756 TGAGACGGAGGGAGTAGTAACTAG 60.142 50.000 0.00 0.00 35.56 2.57
2561 2591 3.776969 TGAGACGGAGGGAGTAGTAACTA 59.223 47.826 0.00 0.00 35.56 2.24
2562 2592 2.575279 TGAGACGGAGGGAGTAGTAACT 59.425 50.000 0.00 0.00 39.21 2.24
2563 2593 2.996631 TGAGACGGAGGGAGTAGTAAC 58.003 52.381 0.00 0.00 0.00 2.50
2564 2594 3.201487 TCATGAGACGGAGGGAGTAGTAA 59.799 47.826 0.00 0.00 0.00 2.24
2565 2595 2.775960 TCATGAGACGGAGGGAGTAGTA 59.224 50.000 0.00 0.00 0.00 1.82
2566 2596 1.564818 TCATGAGACGGAGGGAGTAGT 59.435 52.381 0.00 0.00 0.00 2.73
2567 2597 2.350057 TCATGAGACGGAGGGAGTAG 57.650 55.000 0.00 0.00 0.00 2.57
2568 2598 2.091830 ACATCATGAGACGGAGGGAGTA 60.092 50.000 0.09 0.00 0.00 2.59
2569 2599 1.342474 ACATCATGAGACGGAGGGAGT 60.342 52.381 0.09 0.00 0.00 3.85
2570 2600 1.407936 ACATCATGAGACGGAGGGAG 58.592 55.000 0.09 0.00 0.00 4.30
2571 2601 2.748209 TACATCATGAGACGGAGGGA 57.252 50.000 0.09 0.00 0.00 4.20
2572 2602 2.959030 TCTTACATCATGAGACGGAGGG 59.041 50.000 0.09 0.00 0.00 4.30
2573 2603 3.971150 GTCTTACATCATGAGACGGAGG 58.029 50.000 0.09 0.00 34.53 4.30
2604 2634 8.085296 AAGACATTCTTTGACACTAGTCTAGTG 58.915 37.037 30.33 30.33 46.58 2.74
2605 2635 7.768807 AGACATTCTTTGACACTAGTCTAGT 57.231 36.000 6.71 6.71 45.20 2.57
2606 2636 9.562583 GTAAGACATTCTTTGACACTAGTCTAG 57.437 37.037 5.27 5.27 40.32 2.43
2607 2637 9.074576 TGTAAGACATTCTTTGACACTAGTCTA 57.925 33.333 0.00 0.00 40.32 2.59
2608 2638 7.952671 TGTAAGACATTCTTTGACACTAGTCT 58.047 34.615 0.00 0.00 40.32 3.24
2609 2639 8.764524 ATGTAAGACATTCTTTGACACTAGTC 57.235 34.615 0.00 0.00 39.42 2.59
2624 2654 5.454755 CCTCCGTCCCATAAATGTAAGACAT 60.455 44.000 0.00 0.00 41.31 3.06
2625 2655 4.141801 CCTCCGTCCCATAAATGTAAGACA 60.142 45.833 0.00 0.00 0.00 3.41
2626 2656 4.377897 CCTCCGTCCCATAAATGTAAGAC 58.622 47.826 0.00 0.00 0.00 3.01
2627 2657 3.389983 CCCTCCGTCCCATAAATGTAAGA 59.610 47.826 0.00 0.00 0.00 2.10
2628 2658 3.389983 TCCCTCCGTCCCATAAATGTAAG 59.610 47.826 0.00 0.00 0.00 2.34
2629 2659 3.386063 TCCCTCCGTCCCATAAATGTAA 58.614 45.455 0.00 0.00 0.00 2.41
2630 2660 2.969950 CTCCCTCCGTCCCATAAATGTA 59.030 50.000 0.00 0.00 0.00 2.29
2631 2661 1.768870 CTCCCTCCGTCCCATAAATGT 59.231 52.381 0.00 0.00 0.00 2.71
2632 2662 1.768870 ACTCCCTCCGTCCCATAAATG 59.231 52.381 0.00 0.00 0.00 2.32
2633 2663 2.191981 ACTCCCTCCGTCCCATAAAT 57.808 50.000 0.00 0.00 0.00 1.40
2634 2664 2.023695 AGTACTCCCTCCGTCCCATAAA 60.024 50.000 0.00 0.00 0.00 1.40
2635 2665 1.572415 AGTACTCCCTCCGTCCCATAA 59.428 52.381 0.00 0.00 0.00 1.90
2636 2666 1.229131 AGTACTCCCTCCGTCCCATA 58.771 55.000 0.00 0.00 0.00 2.74
2637 2667 1.145325 CTAGTACTCCCTCCGTCCCAT 59.855 57.143 0.00 0.00 0.00 4.00
2638 2668 0.549950 CTAGTACTCCCTCCGTCCCA 59.450 60.000 0.00 0.00 0.00 4.37
2639 2669 0.550432 ACTAGTACTCCCTCCGTCCC 59.450 60.000 0.00 0.00 0.00 4.46
2640 2670 2.224499 CCTACTAGTACTCCCTCCGTCC 60.224 59.091 0.00 0.00 0.00 4.79
2641 2671 2.703007 TCCTACTAGTACTCCCTCCGTC 59.297 54.545 0.00 0.00 0.00 4.79
2642 2672 2.705127 CTCCTACTAGTACTCCCTCCGT 59.295 54.545 0.00 0.00 0.00 4.69
2643 2673 2.705127 ACTCCTACTAGTACTCCCTCCG 59.295 54.545 0.00 0.00 0.00 4.63
2644 2674 5.131809 TGTTACTCCTACTAGTACTCCCTCC 59.868 48.000 0.00 0.00 31.73 4.30
2645 2675 6.245890 TGTTACTCCTACTAGTACTCCCTC 57.754 45.833 0.00 0.00 31.73 4.30
2646 2676 6.389278 TGATGTTACTCCTACTAGTACTCCCT 59.611 42.308 0.00 0.00 31.73 4.20
2647 2677 6.486320 GTGATGTTACTCCTACTAGTACTCCC 59.514 46.154 0.00 0.00 31.73 4.30
2648 2678 7.012232 GTGTGATGTTACTCCTACTAGTACTCC 59.988 44.444 0.00 0.00 31.73 3.85
2649 2679 7.551974 TGTGTGATGTTACTCCTACTAGTACTC 59.448 40.741 0.00 0.00 31.73 2.59
2650 2680 7.400439 TGTGTGATGTTACTCCTACTAGTACT 58.600 38.462 0.00 0.00 31.73 2.73
2651 2681 7.621428 TGTGTGATGTTACTCCTACTAGTAC 57.379 40.000 0.00 0.00 31.73 2.73
2652 2682 9.334947 GTATGTGTGATGTTACTCCTACTAGTA 57.665 37.037 1.89 1.89 0.00 1.82
2653 2683 7.284944 GGTATGTGTGATGTTACTCCTACTAGT 59.715 40.741 0.00 0.00 0.00 2.57
2654 2684 7.284716 TGGTATGTGTGATGTTACTCCTACTAG 59.715 40.741 0.00 0.00 0.00 2.57
2655 2685 7.120716 TGGTATGTGTGATGTTACTCCTACTA 58.879 38.462 0.00 0.00 0.00 1.82
2656 2686 5.955959 TGGTATGTGTGATGTTACTCCTACT 59.044 40.000 0.00 0.00 0.00 2.57
2657 2687 6.216801 TGGTATGTGTGATGTTACTCCTAC 57.783 41.667 0.00 0.00 0.00 3.18
2658 2688 6.860790 TTGGTATGTGTGATGTTACTCCTA 57.139 37.500 0.00 0.00 0.00 2.94
2659 2689 5.755409 TTGGTATGTGTGATGTTACTCCT 57.245 39.130 0.00 0.00 0.00 3.69
2660 2690 5.163754 GCTTTGGTATGTGTGATGTTACTCC 60.164 44.000 0.00 0.00 0.00 3.85
2661 2691 5.411361 TGCTTTGGTATGTGTGATGTTACTC 59.589 40.000 0.00 0.00 0.00 2.59
2662 2692 5.312895 TGCTTTGGTATGTGTGATGTTACT 58.687 37.500 0.00 0.00 0.00 2.24
2663 2693 5.621197 TGCTTTGGTATGTGTGATGTTAC 57.379 39.130 0.00 0.00 0.00 2.50
2664 2694 6.000840 TCTTGCTTTGGTATGTGTGATGTTA 58.999 36.000 0.00 0.00 0.00 2.41
2665 2695 4.826733 TCTTGCTTTGGTATGTGTGATGTT 59.173 37.500 0.00 0.00 0.00 2.71
2666 2696 4.397420 TCTTGCTTTGGTATGTGTGATGT 58.603 39.130 0.00 0.00 0.00 3.06
2667 2697 5.124297 TCATCTTGCTTTGGTATGTGTGATG 59.876 40.000 0.00 0.00 0.00 3.07
2668 2698 5.255687 TCATCTTGCTTTGGTATGTGTGAT 58.744 37.500 0.00 0.00 0.00 3.06
2669 2699 4.650734 TCATCTTGCTTTGGTATGTGTGA 58.349 39.130 0.00 0.00 0.00 3.58
2670 2700 4.456911 ACTCATCTTGCTTTGGTATGTGTG 59.543 41.667 0.00 0.00 0.00 3.82
2671 2701 4.655963 ACTCATCTTGCTTTGGTATGTGT 58.344 39.130 0.00 0.00 0.00 3.72
2672 2702 4.940046 AGACTCATCTTGCTTTGGTATGTG 59.060 41.667 0.00 0.00 0.00 3.21
2673 2703 5.171339 AGACTCATCTTGCTTTGGTATGT 57.829 39.130 0.00 0.00 0.00 2.29
2674 2704 8.768955 GTTATAGACTCATCTTGCTTTGGTATG 58.231 37.037 0.00 0.00 36.29 2.39
2675 2705 7.934120 GGTTATAGACTCATCTTGCTTTGGTAT 59.066 37.037 0.00 0.00 36.29 2.73
2676 2706 7.125811 AGGTTATAGACTCATCTTGCTTTGGTA 59.874 37.037 0.00 0.00 36.29 3.25
2677 2707 6.069963 AGGTTATAGACTCATCTTGCTTTGGT 60.070 38.462 0.00 0.00 36.29 3.67
2678 2708 6.352516 AGGTTATAGACTCATCTTGCTTTGG 58.647 40.000 0.00 0.00 36.29 3.28
2679 2709 8.948631 TTAGGTTATAGACTCATCTTGCTTTG 57.051 34.615 0.00 0.00 36.29 2.77
2722 2752 5.121105 GGGGAGTAACATATGTGTGGTAAC 58.879 45.833 9.63 1.91 38.92 2.50
2723 2753 4.783763 TGGGGAGTAACATATGTGTGGTAA 59.216 41.667 9.63 0.00 38.92 2.85
2724 2754 4.162698 GTGGGGAGTAACATATGTGTGGTA 59.837 45.833 9.63 0.00 38.92 3.25
2725 2755 3.054655 GTGGGGAGTAACATATGTGTGGT 60.055 47.826 9.63 0.00 38.92 4.16
2726 2756 3.199946 AGTGGGGAGTAACATATGTGTGG 59.800 47.826 9.63 0.00 38.92 4.17
2727 2757 4.487714 AGTGGGGAGTAACATATGTGTG 57.512 45.455 9.63 0.00 38.92 3.82
2728 2758 5.071788 CCATAGTGGGGAGTAACATATGTGT 59.928 44.000 9.63 2.63 35.14 3.72
2729 2759 5.551233 CCATAGTGGGGAGTAACATATGTG 58.449 45.833 9.63 0.00 32.67 3.21
2730 2760 4.041691 GCCATAGTGGGGAGTAACATATGT 59.958 45.833 1.41 1.41 38.19 2.29
2731 2761 4.287067 AGCCATAGTGGGGAGTAACATATG 59.713 45.833 0.00 0.00 38.19 1.78
2732 2762 4.503398 AGCCATAGTGGGGAGTAACATAT 58.497 43.478 0.00 0.00 38.19 1.78
2733 2763 3.936461 AGCCATAGTGGGGAGTAACATA 58.064 45.455 0.00 0.00 38.19 2.29
2734 2764 2.776665 AGCCATAGTGGGGAGTAACAT 58.223 47.619 0.00 0.00 38.19 2.71
2735 2765 2.263895 AGCCATAGTGGGGAGTAACA 57.736 50.000 0.00 0.00 38.19 2.41
2736 2766 3.306613 ACTAGCCATAGTGGGGAGTAAC 58.693 50.000 0.00 0.00 40.84 2.50
2737 2767 3.573695 GACTAGCCATAGTGGGGAGTAA 58.426 50.000 0.00 0.00 42.46 2.24
2738 2768 2.158355 GGACTAGCCATAGTGGGGAGTA 60.158 54.545 0.00 0.00 42.46 2.59
2739 2769 1.413227 GGACTAGCCATAGTGGGGAGT 60.413 57.143 0.00 0.00 42.46 3.85
2740 2770 1.343069 GGACTAGCCATAGTGGGGAG 58.657 60.000 0.00 0.00 42.46 4.30
2741 2771 0.639943 TGGACTAGCCATAGTGGGGA 59.360 55.000 2.19 0.00 42.46 4.81
2742 2772 3.240670 TGGACTAGCCATAGTGGGG 57.759 57.895 2.19 0.00 42.46 4.96
2752 2782 4.957684 ATGGGTAGTAACATGGACTAGC 57.042 45.455 21.86 21.86 43.85 3.42
2753 2783 6.049149 CACAATGGGTAGTAACATGGACTAG 58.951 44.000 9.37 0.00 30.08 2.57
2754 2784 5.104693 CCACAATGGGTAGTAACATGGACTA 60.105 44.000 0.00 1.43 32.67 2.59
2755 2785 4.324254 CCACAATGGGTAGTAACATGGACT 60.324 45.833 7.58 7.58 32.67 3.85
2756 2786 3.945285 CCACAATGGGTAGTAACATGGAC 59.055 47.826 0.00 0.00 32.67 4.02
2757 2787 3.623703 GCCACAATGGGTAGTAACATGGA 60.624 47.826 0.00 0.00 38.19 3.41
2758 2788 2.687935 GCCACAATGGGTAGTAACATGG 59.312 50.000 0.00 0.00 38.19 3.66
2769 2799 3.627395 TGTAAGACTAGCCACAATGGG 57.373 47.619 0.00 0.00 38.19 4.00
2770 2800 7.047891 TCTAAATGTAAGACTAGCCACAATGG 58.952 38.462 0.00 0.00 41.55 3.16
2771 2801 8.492673 TTCTAAATGTAAGACTAGCCACAATG 57.507 34.615 0.00 0.00 0.00 2.82
2772 2802 8.947115 GTTTCTAAATGTAAGACTAGCCACAAT 58.053 33.333 0.00 0.00 0.00 2.71
2773 2803 7.934665 TGTTTCTAAATGTAAGACTAGCCACAA 59.065 33.333 0.00 0.00 0.00 3.33
2774 2804 7.446769 TGTTTCTAAATGTAAGACTAGCCACA 58.553 34.615 0.00 0.00 0.00 4.17
2775 2805 7.817962 TCTGTTTCTAAATGTAAGACTAGCCAC 59.182 37.037 0.00 0.00 0.00 5.01
2776 2806 7.903145 TCTGTTTCTAAATGTAAGACTAGCCA 58.097 34.615 0.00 0.00 0.00 4.75
2777 2807 7.492994 CCTCTGTTTCTAAATGTAAGACTAGCC 59.507 40.741 0.00 0.00 0.00 3.93
2778 2808 7.492994 CCCTCTGTTTCTAAATGTAAGACTAGC 59.507 40.741 0.00 0.00 0.00 3.42
2779 2809 8.532819 ACCCTCTGTTTCTAAATGTAAGACTAG 58.467 37.037 0.00 0.00 0.00 2.57
2780 2810 8.311836 CACCCTCTGTTTCTAAATGTAAGACTA 58.688 37.037 0.00 0.00 0.00 2.59
2781 2811 7.162082 CACCCTCTGTTTCTAAATGTAAGACT 58.838 38.462 0.00 0.00 0.00 3.24
2782 2812 6.935208 ACACCCTCTGTTTCTAAATGTAAGAC 59.065 38.462 0.00 0.00 0.00 3.01
2783 2813 6.934645 CACACCCTCTGTTTCTAAATGTAAGA 59.065 38.462 0.00 0.00 0.00 2.10
2784 2814 6.710744 ACACACCCTCTGTTTCTAAATGTAAG 59.289 38.462 0.00 0.00 0.00 2.34
2808 2838 0.096976 TTCCTACGCGCGTGTAGTAC 59.903 55.000 41.33 12.61 40.17 2.73
2809 2839 0.096976 GTTCCTACGCGCGTGTAGTA 59.903 55.000 41.33 32.02 40.17 1.82
2810 2840 1.154150 GTTCCTACGCGCGTGTAGT 60.154 57.895 41.33 24.74 40.17 2.73
2811 2841 2.212983 CGTTCCTACGCGCGTGTAG 61.213 63.158 39.63 39.63 41.41 2.74
2812 2842 2.202336 CGTTCCTACGCGCGTGTA 60.202 61.111 42.78 28.76 41.41 2.90
2823 2853 2.271173 GGGAAATCGGCCGTTCCT 59.729 61.111 33.83 16.45 42.57 3.36
2840 2870 3.056179 ACCAGGAACAAAAACAACCTGTG 60.056 43.478 0.00 0.00 44.33 3.66
2852 2882 3.194542 CACACTTTCCAAACCAGGAACAA 59.805 43.478 0.00 0.00 46.85 2.83
2853 2883 2.757868 CACACTTTCCAAACCAGGAACA 59.242 45.455 0.00 0.00 46.85 3.18
2901 2931 9.905713 AGGCTGATTTTAAGATAGTGTCAAATA 57.094 29.630 0.00 0.00 0.00 1.40
2902 2932 8.814038 AGGCTGATTTTAAGATAGTGTCAAAT 57.186 30.769 0.00 0.00 0.00 2.32
2903 2933 7.336931 GGAGGCTGATTTTAAGATAGTGTCAAA 59.663 37.037 0.00 0.00 0.00 2.69
2904 2934 6.823689 GGAGGCTGATTTTAAGATAGTGTCAA 59.176 38.462 0.00 0.00 0.00 3.18
2905 2935 6.156949 AGGAGGCTGATTTTAAGATAGTGTCA 59.843 38.462 0.00 0.00 0.00 3.58
2906 2936 6.587273 AGGAGGCTGATTTTAAGATAGTGTC 58.413 40.000 0.00 0.00 0.00 3.67
2907 2937 6.567602 AGGAGGCTGATTTTAAGATAGTGT 57.432 37.500 0.00 0.00 0.00 3.55
2908 2938 9.566432 AATAAGGAGGCTGATTTTAAGATAGTG 57.434 33.333 0.00 0.00 0.00 2.74
2912 2942 8.907885 GTCAAATAAGGAGGCTGATTTTAAGAT 58.092 33.333 0.00 0.00 0.00 2.40
2913 2943 7.888021 TGTCAAATAAGGAGGCTGATTTTAAGA 59.112 33.333 0.00 0.00 0.00 2.10
2914 2944 8.055279 TGTCAAATAAGGAGGCTGATTTTAAG 57.945 34.615 0.00 0.00 0.00 1.85
2915 2945 7.669722 ACTGTCAAATAAGGAGGCTGATTTTAA 59.330 33.333 0.00 0.00 0.00 1.52
2916 2946 7.121168 CACTGTCAAATAAGGAGGCTGATTTTA 59.879 37.037 0.00 0.00 0.00 1.52
2917 2947 6.012745 ACTGTCAAATAAGGAGGCTGATTTT 58.987 36.000 0.00 0.00 0.00 1.82
2918 2948 5.416952 CACTGTCAAATAAGGAGGCTGATTT 59.583 40.000 0.00 0.00 0.00 2.17
2919 2949 4.946157 CACTGTCAAATAAGGAGGCTGATT 59.054 41.667 0.00 0.00 0.00 2.57
2920 2950 4.225942 TCACTGTCAAATAAGGAGGCTGAT 59.774 41.667 0.00 0.00 0.00 2.90
2921 2951 3.582647 TCACTGTCAAATAAGGAGGCTGA 59.417 43.478 0.00 0.00 0.00 4.26
2922 2952 3.942829 TCACTGTCAAATAAGGAGGCTG 58.057 45.455 0.00 0.00 0.00 4.85
2923 2953 4.640771 TTCACTGTCAAATAAGGAGGCT 57.359 40.909 0.00 0.00 0.00 4.58
2924 2954 5.705609 TTTTCACTGTCAAATAAGGAGGC 57.294 39.130 0.00 0.00 0.00 4.70
2944 2974 8.482128 TGTGTCAAATAGGGAAGAACAATTTTT 58.518 29.630 0.00 0.00 0.00 1.94
2945 2975 8.017418 TGTGTCAAATAGGGAAGAACAATTTT 57.983 30.769 0.00 0.00 0.00 1.82
2946 2976 7.595819 TGTGTCAAATAGGGAAGAACAATTT 57.404 32.000 0.00 0.00 0.00 1.82
2947 2977 7.287696 ACTTGTGTCAAATAGGGAAGAACAATT 59.712 33.333 0.00 0.00 0.00 2.32
2948 2978 6.777580 ACTTGTGTCAAATAGGGAAGAACAAT 59.222 34.615 0.00 0.00 0.00 2.71
2949 2979 6.126409 ACTTGTGTCAAATAGGGAAGAACAA 58.874 36.000 0.00 0.00 0.00 2.83
2950 2980 5.690865 ACTTGTGTCAAATAGGGAAGAACA 58.309 37.500 0.00 0.00 0.00 3.18
2951 2981 6.486993 AGAACTTGTGTCAAATAGGGAAGAAC 59.513 38.462 0.00 0.00 0.00 3.01
2952 2982 6.601332 AGAACTTGTGTCAAATAGGGAAGAA 58.399 36.000 0.00 0.00 0.00 2.52
2953 2983 6.187727 AGAACTTGTGTCAAATAGGGAAGA 57.812 37.500 0.00 0.00 0.00 2.87
2954 2984 7.979444 TTAGAACTTGTGTCAAATAGGGAAG 57.021 36.000 0.00 0.00 0.00 3.46
2955 2985 8.934023 ATTTAGAACTTGTGTCAAATAGGGAA 57.066 30.769 0.00 0.00 0.00 3.97
2956 2986 8.934023 AATTTAGAACTTGTGTCAAATAGGGA 57.066 30.769 0.00 0.00 0.00 4.20
2957 2987 9.981114 AAAATTTAGAACTTGTGTCAAATAGGG 57.019 29.630 0.00 0.00 0.00 3.53
2963 2993 9.974980 GGGAATAAAATTTAGAACTTGTGTCAA 57.025 29.630 0.00 0.00 0.00 3.18
2964 2994 9.362151 AGGGAATAAAATTTAGAACTTGTGTCA 57.638 29.630 0.00 0.00 0.00 3.58
2995 3025 5.709966 AGGCTTAAAATGGACGAAAATGTC 58.290 37.500 0.00 0.00 38.17 3.06
2996 3026 5.722021 AGGCTTAAAATGGACGAAAATGT 57.278 34.783 0.00 0.00 0.00 2.71
2997 3027 8.594687 CATTTAGGCTTAAAATGGACGAAAATG 58.405 33.333 12.82 5.75 39.55 2.32
2998 3028 8.527810 TCATTTAGGCTTAAAATGGACGAAAAT 58.472 29.630 18.10 1.22 42.17 1.82
2999 3029 7.810759 GTCATTTAGGCTTAAAATGGACGAAAA 59.189 33.333 18.10 0.00 42.17 2.29
3000 3030 7.040340 TGTCATTTAGGCTTAAAATGGACGAAA 60.040 33.333 18.10 0.00 42.17 3.46
3001 3031 6.431543 TGTCATTTAGGCTTAAAATGGACGAA 59.568 34.615 18.10 1.52 42.17 3.85
3002 3032 5.941058 TGTCATTTAGGCTTAAAATGGACGA 59.059 36.000 18.10 1.82 42.17 4.20
3003 3033 6.027749 GTGTCATTTAGGCTTAAAATGGACG 58.972 40.000 18.10 0.00 42.17 4.79
3004 3034 6.152831 AGGTGTCATTTAGGCTTAAAATGGAC 59.847 38.462 18.10 16.98 42.17 4.02
3005 3035 6.152661 CAGGTGTCATTTAGGCTTAAAATGGA 59.847 38.462 18.10 1.53 42.17 3.41
3006 3036 6.152661 TCAGGTGTCATTTAGGCTTAAAATGG 59.847 38.462 18.10 5.82 42.17 3.16
3007 3037 7.156876 TCAGGTGTCATTTAGGCTTAAAATG 57.843 36.000 14.02 14.02 42.89 2.32
3008 3038 7.775053 TTCAGGTGTCATTTAGGCTTAAAAT 57.225 32.000 5.01 0.00 32.80 1.82
3009 3039 7.589958 TTTCAGGTGTCATTTAGGCTTAAAA 57.410 32.000 5.01 0.00 32.80 1.52
3010 3040 7.504238 TCTTTTCAGGTGTCATTTAGGCTTAAA 59.496 33.333 3.24 3.24 33.54 1.52
3011 3041 7.001674 TCTTTTCAGGTGTCATTTAGGCTTAA 58.998 34.615 0.00 0.00 0.00 1.85
3012 3042 6.430000 GTCTTTTCAGGTGTCATTTAGGCTTA 59.570 38.462 0.00 0.00 0.00 3.09
3013 3043 5.241728 GTCTTTTCAGGTGTCATTTAGGCTT 59.758 40.000 0.00 0.00 0.00 4.35
3014 3044 4.762251 GTCTTTTCAGGTGTCATTTAGGCT 59.238 41.667 0.00 0.00 0.00 4.58
3015 3045 4.762251 AGTCTTTTCAGGTGTCATTTAGGC 59.238 41.667 0.00 0.00 0.00 3.93
3016 3046 6.234177 AGAGTCTTTTCAGGTGTCATTTAGG 58.766 40.000 0.00 0.00 0.00 2.69
3017 3047 7.736447 AAGAGTCTTTTCAGGTGTCATTTAG 57.264 36.000 0.00 0.00 0.00 1.85
3018 3048 8.405531 CAAAAGAGTCTTTTCAGGTGTCATTTA 58.594 33.333 24.77 0.00 0.00 1.40
3019 3049 7.260603 CAAAAGAGTCTTTTCAGGTGTCATTT 58.739 34.615 24.77 0.31 0.00 2.32
3020 3050 6.681368 GCAAAAGAGTCTTTTCAGGTGTCATT 60.681 38.462 24.77 0.50 0.00 2.57
3021 3051 5.221126 GCAAAAGAGTCTTTTCAGGTGTCAT 60.221 40.000 24.77 1.00 0.00 3.06
3022 3052 4.096382 GCAAAAGAGTCTTTTCAGGTGTCA 59.904 41.667 24.77 0.00 0.00 3.58
3023 3053 4.498177 GGCAAAAGAGTCTTTTCAGGTGTC 60.498 45.833 24.77 14.02 0.00 3.67
3024 3054 3.381590 GGCAAAAGAGTCTTTTCAGGTGT 59.618 43.478 24.77 3.12 0.00 4.16
3025 3055 3.243535 GGGCAAAAGAGTCTTTTCAGGTG 60.244 47.826 24.77 16.46 0.00 4.00
3026 3056 2.959030 GGGCAAAAGAGTCTTTTCAGGT 59.041 45.455 24.77 4.53 0.00 4.00
3027 3057 2.297315 GGGGCAAAAGAGTCTTTTCAGG 59.703 50.000 24.77 16.24 0.00 3.86
3028 3058 3.225940 AGGGGCAAAAGAGTCTTTTCAG 58.774 45.455 24.77 16.86 0.00 3.02
3029 3059 3.222603 GAGGGGCAAAAGAGTCTTTTCA 58.777 45.455 24.77 0.00 0.00 2.69
3030 3060 3.222603 TGAGGGGCAAAAGAGTCTTTTC 58.777 45.455 24.77 18.79 0.00 2.29
3031 3061 3.312736 TGAGGGGCAAAAGAGTCTTTT 57.687 42.857 22.49 22.49 0.00 2.27
3032 3062 3.160269 CATGAGGGGCAAAAGAGTCTTT 58.840 45.455 12.50 12.50 0.00 2.52
3033 3063 2.108952 ACATGAGGGGCAAAAGAGTCTT 59.891 45.455 0.00 0.00 0.00 3.01
3034 3064 1.707427 ACATGAGGGGCAAAAGAGTCT 59.293 47.619 0.00 0.00 0.00 3.24
3035 3065 1.815003 CACATGAGGGGCAAAAGAGTC 59.185 52.381 0.00 0.00 0.00 3.36
3036 3066 1.548582 CCACATGAGGGGCAAAAGAGT 60.549 52.381 0.00 0.00 0.00 3.24
3037 3067 1.180029 CCACATGAGGGGCAAAAGAG 58.820 55.000 0.00 0.00 0.00 2.85
3038 3068 0.482446 ACCACATGAGGGGCAAAAGA 59.518 50.000 14.11 0.00 0.00 2.52
3039 3069 2.214376 TACCACATGAGGGGCAAAAG 57.786 50.000 14.11 0.00 0.00 2.27
3040 3070 2.225242 ACATACCACATGAGGGGCAAAA 60.225 45.455 14.11 0.00 0.00 2.44
3041 3071 1.357420 ACATACCACATGAGGGGCAAA 59.643 47.619 14.11 0.00 0.00 3.68
3042 3072 0.998928 ACATACCACATGAGGGGCAA 59.001 50.000 14.11 0.00 0.00 4.52
3043 3073 0.255604 CACATACCACATGAGGGGCA 59.744 55.000 14.11 0.00 0.00 5.36
3044 3074 1.103398 GCACATACCACATGAGGGGC 61.103 60.000 14.11 5.40 0.00 5.80
3045 3075 0.815213 CGCACATACCACATGAGGGG 60.815 60.000 14.11 7.61 0.00 4.79
3046 3076 0.107703 ACGCACATACCACATGAGGG 60.108 55.000 14.11 10.10 0.00 4.30
3047 3077 1.009078 CACGCACATACCACATGAGG 58.991 55.000 7.74 7.74 0.00 3.86
3048 3078 0.374758 GCACGCACATACCACATGAG 59.625 55.000 0.00 0.00 0.00 2.90
3049 3079 0.321122 TGCACGCACATACCACATGA 60.321 50.000 0.00 0.00 0.00 3.07
3050 3080 0.097499 CTGCACGCACATACCACATG 59.903 55.000 0.00 0.00 0.00 3.21
3051 3081 1.647545 GCTGCACGCACATACCACAT 61.648 55.000 0.00 0.00 38.92 3.21
3052 3082 2.324330 GCTGCACGCACATACCACA 61.324 57.895 0.00 0.00 38.92 4.17
3053 3083 2.324330 TGCTGCACGCACATACCAC 61.324 57.895 0.00 0.00 45.47 4.16
3054 3084 2.031768 TGCTGCACGCACATACCA 59.968 55.556 0.00 0.00 45.47 3.25
3062 3092 0.725784 GTGTATGTGTTGCTGCACGC 60.726 55.000 0.00 5.35 41.94 5.34
3063 3093 0.585838 TGTGTATGTGTTGCTGCACG 59.414 50.000 0.00 0.00 41.94 5.34
3064 3094 2.587956 CATGTGTATGTGTTGCTGCAC 58.412 47.619 0.00 0.00 39.65 4.57
3065 3095 1.068402 GCATGTGTATGTGTTGCTGCA 60.068 47.619 0.00 0.00 36.65 4.41
3066 3096 1.068402 TGCATGTGTATGTGTTGCTGC 60.068 47.619 0.00 0.00 36.65 5.25
3067 3097 2.587956 GTGCATGTGTATGTGTTGCTG 58.412 47.619 0.00 0.00 36.65 4.41
3068 3098 1.541147 GGTGCATGTGTATGTGTTGCT 59.459 47.619 0.00 0.00 36.65 3.91
3069 3099 1.269174 TGGTGCATGTGTATGTGTTGC 59.731 47.619 0.00 0.00 36.65 4.17
3070 3100 3.243334 TGTTGGTGCATGTGTATGTGTTG 60.243 43.478 0.00 0.00 36.65 3.33
3071 3101 2.954989 TGTTGGTGCATGTGTATGTGTT 59.045 40.909 0.00 0.00 36.65 3.32
3072 3102 2.293122 GTGTTGGTGCATGTGTATGTGT 59.707 45.455 0.00 0.00 36.65 3.72
3073 3103 2.292845 TGTGTTGGTGCATGTGTATGTG 59.707 45.455 0.00 0.00 36.65 3.21
3074 3104 2.293122 GTGTGTTGGTGCATGTGTATGT 59.707 45.455 0.00 0.00 36.65 2.29
3075 3105 2.292845 TGTGTGTTGGTGCATGTGTATG 59.707 45.455 0.00 0.00 37.36 2.39
3076 3106 2.293122 GTGTGTGTTGGTGCATGTGTAT 59.707 45.455 0.00 0.00 0.00 2.29
3077 3107 1.673400 GTGTGTGTTGGTGCATGTGTA 59.327 47.619 0.00 0.00 0.00 2.90
3078 3108 0.455410 GTGTGTGTTGGTGCATGTGT 59.545 50.000 0.00 0.00 0.00 3.72
3079 3109 0.591994 CGTGTGTGTTGGTGCATGTG 60.592 55.000 0.00 0.00 0.00 3.21
3080 3110 1.726865 CGTGTGTGTTGGTGCATGT 59.273 52.632 0.00 0.00 0.00 3.21
3081 3111 1.658102 GCGTGTGTGTTGGTGCATG 60.658 57.895 0.00 0.00 0.00 4.06
3082 3112 2.117779 TGCGTGTGTGTTGGTGCAT 61.118 52.632 0.00 0.00 0.00 3.96
3083 3113 2.747855 TGCGTGTGTGTTGGTGCA 60.748 55.556 0.00 0.00 0.00 4.57
3084 3114 2.277884 GTGCGTGTGTGTTGGTGC 60.278 61.111 0.00 0.00 0.00 5.01
3085 3115 2.022623 CGTGCGTGTGTGTTGGTG 59.977 61.111 0.00 0.00 0.00 4.17
3086 3116 3.871574 GCGTGCGTGTGTGTTGGT 61.872 61.111 0.00 0.00 0.00 3.67
3087 3117 4.936248 CGCGTGCGTGTGTGTTGG 62.936 66.667 6.00 0.00 34.35 3.77
3103 3133 2.099254 TTGTTGCGTGTGTGTGCG 59.901 55.556 0.00 0.00 0.00 5.34
3104 3134 1.154131 TGTTGTTGCGTGTGTGTGC 60.154 52.632 0.00 0.00 0.00 4.57
3105 3135 1.125274 CGTGTTGTTGCGTGTGTGTG 61.125 55.000 0.00 0.00 0.00 3.82
3106 3136 1.133664 CGTGTTGTTGCGTGTGTGT 59.866 52.632 0.00 0.00 0.00 3.72
3107 3137 2.214292 GCGTGTTGTTGCGTGTGTG 61.214 57.895 0.00 0.00 0.00 3.82
3108 3138 2.099446 GCGTGTTGTTGCGTGTGT 59.901 55.556 0.00 0.00 0.00 3.72
3109 3139 2.099254 TGCGTGTTGTTGCGTGTG 59.901 55.556 0.00 0.00 0.00 3.82
3110 3140 2.099446 GTGCGTGTTGTTGCGTGT 59.901 55.556 0.00 0.00 0.00 4.49
3111 3141 3.010692 CGTGCGTGTTGTTGCGTG 61.011 61.111 0.00 0.00 0.00 5.34
3112 3142 4.879686 GCGTGCGTGTTGTTGCGT 62.880 61.111 0.00 0.00 0.00 5.24
3130 3160 1.795170 ATTTCAGGGTGTGCACGCAC 61.795 55.000 29.97 27.72 45.43 5.34
3131 3161 1.514678 GATTTCAGGGTGTGCACGCA 61.515 55.000 29.97 10.42 45.43 5.24
3132 3162 1.210155 GATTTCAGGGTGTGCACGC 59.790 57.895 22.19 22.19 43.63 5.34
3133 3163 0.518636 CTGATTTCAGGGTGTGCACG 59.481 55.000 13.13 0.00 40.20 5.34
3134 3164 3.965119 CCACTGATTTCAGGGTGTGCAC 61.965 54.545 10.75 10.75 45.69 4.57
3135 3165 1.818913 CCACTGATTTCAGGGTGTGCA 60.819 52.381 11.99 0.00 45.69 4.57
3136 3166 0.883833 CCACTGATTTCAGGGTGTGC 59.116 55.000 11.99 0.00 45.69 4.57
3137 3167 2.566833 TCCACTGATTTCAGGGTGTG 57.433 50.000 11.99 2.28 45.69 3.82
3138 3168 3.074390 TCAATCCACTGATTTCAGGGTGT 59.926 43.478 11.99 0.00 45.69 4.16
3139 3169 3.689347 TCAATCCACTGATTTCAGGGTG 58.311 45.455 11.99 3.05 45.69 4.61
3140 3170 3.331889 ACTCAATCCACTGATTTCAGGGT 59.668 43.478 11.99 0.00 45.69 4.34
3185 3215 1.306970 TGGGTCCCACCGTTGTTTT 59.693 52.632 6.47 0.00 39.83 2.43
3186 3216 3.008408 TGGGTCCCACCGTTGTTT 58.992 55.556 6.47 0.00 39.83 2.83
3197 3227 3.577389 CTGATTTCAGGGTGGGTCC 57.423 57.895 0.00 0.00 40.20 4.46
3206 3236 2.124151 CCGGCCCCCTGATTTCAG 60.124 66.667 0.00 0.39 43.40 3.02
3207 3237 2.612430 TCCGGCCCCCTGATTTCA 60.612 61.111 0.00 0.00 0.00 2.69
3208 3238 2.124278 GTCCGGCCCCCTGATTTC 60.124 66.667 0.00 0.00 0.00 2.17
3209 3239 4.109675 CGTCCGGCCCCCTGATTT 62.110 66.667 0.00 0.00 0.00 2.17
3222 3252 3.972502 CCAAGAACGTTGAAAATTCGTCC 59.027 43.478 5.00 0.00 36.80 4.79
3223 3253 3.972502 CCCAAGAACGTTGAAAATTCGTC 59.027 43.478 5.00 0.00 36.80 4.20
3224 3254 3.243267 CCCCAAGAACGTTGAAAATTCGT 60.243 43.478 5.00 0.00 39.49 3.85
3225 3255 3.003897 TCCCCAAGAACGTTGAAAATTCG 59.996 43.478 5.00 0.00 0.00 3.34
3226 3256 4.546570 CTCCCCAAGAACGTTGAAAATTC 58.453 43.478 5.00 0.00 0.00 2.17
3227 3257 3.243737 GCTCCCCAAGAACGTTGAAAATT 60.244 43.478 5.00 0.00 0.00 1.82
3228 3258 2.296190 GCTCCCCAAGAACGTTGAAAAT 59.704 45.455 5.00 0.00 0.00 1.82
3229 3259 1.679153 GCTCCCCAAGAACGTTGAAAA 59.321 47.619 5.00 0.00 0.00 2.29
3230 3260 1.314730 GCTCCCCAAGAACGTTGAAA 58.685 50.000 5.00 0.00 0.00 2.69
3231 3261 0.536460 GGCTCCCCAAGAACGTTGAA 60.536 55.000 5.00 0.00 0.00 2.69
3232 3262 1.072505 GGCTCCCCAAGAACGTTGA 59.927 57.895 5.00 0.00 0.00 3.18
3233 3263 1.073199 AGGCTCCCCAAGAACGTTG 59.927 57.895 5.00 0.00 0.00 4.10
3234 3264 1.073199 CAGGCTCCCCAAGAACGTT 59.927 57.895 0.00 0.00 0.00 3.99
3235 3265 1.705997 AACAGGCTCCCCAAGAACGT 61.706 55.000 0.00 0.00 0.00 3.99
3236 3266 1.073199 AACAGGCTCCCCAAGAACG 59.927 57.895 0.00 0.00 0.00 3.95
3237 3267 0.110486 TCAACAGGCTCCCCAAGAAC 59.890 55.000 0.00 0.00 0.00 3.01
3238 3268 0.110486 GTCAACAGGCTCCCCAAGAA 59.890 55.000 0.00 0.00 0.00 2.52
3239 3269 1.059584 TGTCAACAGGCTCCCCAAGA 61.060 55.000 0.00 0.00 0.00 3.02
3240 3270 0.178992 TTGTCAACAGGCTCCCCAAG 60.179 55.000 0.00 0.00 0.00 3.61
3241 3271 0.482446 ATTGTCAACAGGCTCCCCAA 59.518 50.000 0.00 0.00 0.00 4.12
3242 3272 0.482446 AATTGTCAACAGGCTCCCCA 59.518 50.000 0.00 0.00 0.00 4.96
3243 3273 1.273327 CAAATTGTCAACAGGCTCCCC 59.727 52.381 0.00 0.00 0.00 4.81
3244 3274 1.273327 CCAAATTGTCAACAGGCTCCC 59.727 52.381 0.00 0.00 0.00 4.30
3245 3275 1.273327 CCCAAATTGTCAACAGGCTCC 59.727 52.381 0.00 0.00 0.00 4.70
3246 3276 1.963515 ACCCAAATTGTCAACAGGCTC 59.036 47.619 0.00 0.00 0.00 4.70
3247 3277 1.963515 GACCCAAATTGTCAACAGGCT 59.036 47.619 0.00 0.00 32.91 4.58
3248 3278 1.000843 GGACCCAAATTGTCAACAGGC 59.999 52.381 0.00 0.00 34.36 4.85
3249 3279 2.297033 CAGGACCCAAATTGTCAACAGG 59.703 50.000 0.00 0.00 34.36 4.00
3250 3280 3.221771 TCAGGACCCAAATTGTCAACAG 58.778 45.455 0.00 0.00 34.36 3.16
3251 3281 3.117701 TCTCAGGACCCAAATTGTCAACA 60.118 43.478 0.00 0.00 34.36 3.33
3252 3282 3.486383 TCTCAGGACCCAAATTGTCAAC 58.514 45.455 0.00 0.00 34.36 3.18
3253 3283 3.394274 TCTCTCAGGACCCAAATTGTCAA 59.606 43.478 0.00 0.00 34.36 3.18
3254 3284 2.978978 TCTCTCAGGACCCAAATTGTCA 59.021 45.455 0.00 0.00 34.36 3.58
3255 3285 3.703001 TCTCTCAGGACCCAAATTGTC 57.297 47.619 0.00 0.00 0.00 3.18
3256 3286 4.664688 AATCTCTCAGGACCCAAATTGT 57.335 40.909 0.00 0.00 0.00 2.71
3257 3287 5.128919 CCTAATCTCTCAGGACCCAAATTG 58.871 45.833 0.00 0.00 33.42 2.32
3258 3288 4.385754 GCCTAATCTCTCAGGACCCAAATT 60.386 45.833 0.00 0.00 33.42 1.82
3259 3289 3.137360 GCCTAATCTCTCAGGACCCAAAT 59.863 47.826 0.00 0.00 33.42 2.32
3260 3290 2.505819 GCCTAATCTCTCAGGACCCAAA 59.494 50.000 0.00 0.00 33.42 3.28
3261 3291 2.119495 GCCTAATCTCTCAGGACCCAA 58.881 52.381 0.00 0.00 33.42 4.12
3262 3292 1.794714 GCCTAATCTCTCAGGACCCA 58.205 55.000 0.00 0.00 33.42 4.51
3263 3293 0.676736 CGCCTAATCTCTCAGGACCC 59.323 60.000 0.00 0.00 33.42 4.46
3264 3294 1.067821 CACGCCTAATCTCTCAGGACC 59.932 57.143 0.00 0.00 33.42 4.46
3265 3295 1.067821 CCACGCCTAATCTCTCAGGAC 59.932 57.143 0.00 0.00 33.42 3.85
3266 3296 1.403814 CCACGCCTAATCTCTCAGGA 58.596 55.000 0.00 0.00 33.42 3.86
3267 3297 0.390860 CCCACGCCTAATCTCTCAGG 59.609 60.000 0.00 0.00 34.85 3.86
3268 3298 1.067821 GACCCACGCCTAATCTCTCAG 59.932 57.143 0.00 0.00 0.00 3.35
3269 3299 1.112113 GACCCACGCCTAATCTCTCA 58.888 55.000 0.00 0.00 0.00 3.27


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.